[Swift-user] Re: [beagle-users] [SWIFT on Beagle]Cannot Execute Correctly After Submitting Job

[Weiyang Wang]

The fact is I changed the compiler to ftn and make them again, it's saying
"DSSAT040.EXE is up to date"

On Wed, Apr 27, 2011 at 2:33 AM, Ti Leggett <leggett at ci.uchicago.edu> wrote:

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> But make sure you use the Cray compiler wrappers  - cc, CC and ftn - and
> not the gnu compilers (gcc, g++, gfortran) directly.
>
> On Apr 26, 2011, at 1:26 PM, Weiyang Wang wrote:
>
> > In fact I switched to PrgEnv-gnu to compile it again on Beagle, and it
> works if I run it plainly on login.beagle
> >
> > On Tue, Apr 26, 2011 at 10:53 PM, Ti Leggett <leggett at ci.uchicago.edu>
> wrote:
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> > Was the code you're trying to run compiled on Beagle. IT looks to me like
> it was compiled on PADS. You must recompile your code on Beagle using the
> Cray compiler wrappers. Please refer to the Beagle FAQ on how to do this:
> >
> > http://www.ci.uchicago.edu/wiki/bin/view/Beagle/DevelopOnBeagle
> >
> > On Apr 26, 2011, at 9:34 AM, Weiyang Wang wrote:
> >
> > > Hello,
> > >
> > > I've meet problems when submitting jobs using Swift.
> > >
> > > My Command Line is like:
> > >
> > > swift -sites.file ./mysites.xml  -tc.file ./tc.data largescale.swift
> > >
> > > My mysites.xml is like
> > > <config>
> > > <pool handle="pbs">
> > >     <execution provider="pbs" url="none" jobManager="local:pbs"/>
> > >     <profile namespace="globus" key="maxwalltime">0:20:00</profile>
> > >     <profile namespace="globus" key="workersPerNode">8</profile>
> > >     <profile namespace="globus" key="ppn">8</profile>
> > >     <!-- <profile namespace="globus"
> key="internalHostname">172.5.86.6</profile>-->
> > >     <profile namespace="globus" key="nodeGranularity">1</profile>
> > >     <profile namespace="globus" key="maxNodes">5</profile>
> > >     <profile namespace="karajan" key="jobThrottle">1.99</profile>
> > >     <profile namespace="karajan" key="initialScore">10000</profile>
> > >     <profile namespace="globus" key="project">CI-SES000031</profile>
> > >     <!--gridftp  url="local://localhost" />-->
> > >     <filesystem provider="local"/>
> > >     <!--scratch>/home/frankwang/tmp</scratch>-->
> > >
> <workdirectory>/gpfs/pads/projects/CI-SES000031/csm/tempswiftwork</workdirectory>
> > > </pool>
> > > </config>
> > >
> > > My tc.data is like,
> > > pbs             echo    /bin/echo       INSTALLED       INTEL32::LINUX
>  null
> > > pbs             sh      /bin/bash       INSTALLED       INTEL32::LINUX
>  null
> > >
> > >
> > > In my swift script I'm running some gfortran compiled programs(I wrap
> my fortran programs in sh files), and in my error log file, it shows that
> > >
> > > /gpfs/pads/projects/CI-SES000031/csm/DSSAT040.EXE: error while loading
> shared libraries: libgfortran.so.3: cannot open shared object file: No such
> file or directory
> > >
> > > I didn't meet the same problem when I run these on PADS, and after I
> swap the module to PrgEnv-gnu when logging onto Beagle I can also run this
> DSSAT040.EXE.
> > > My guess is,  I submit the jobs to a Non-GNU Environment in Beagle.
> > >
> > > How can I correct this?
> > >
> > > Thank you.
> > >
> > > Weiyang
> > > _______________________________________________
> > > beagle-users mailing list
> > > beagle-users at ci.uchicago.edu
> > > http://mail.ci.uchicago.edu/mailman/listinfo/beagle-users
> >
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