[Swift-user] Re: [beagle-users] [SWIFT on Beagle]Cannot Execute Correctly After Submitting Job

[Ketan Maheshwari]

Hello Weiyang,

I notice that your workdirectory on your sites.xml is /gpfs/.. which would not work as Beagle nodes can not write to any external filesystem. I suggest you to correct it to point to somewhere on your home on /lustre filesystem.

--Ketan


On Apr 26, 2011, at 9:34 AM, Weiyang Wang wrote:

> Hello,
> 
> I've meet problems when submitting jobs using Swift.
> 
> My Command Line is like: 
> 
> swift -sites.file ./mysites.xml  -tc.file ./tc.data largescale.swift
> 
> My mysites.xml is like
> <config>
> <pool handle="pbs">
>     <execution provider="pbs" url="none" jobManager="local:pbs"/>
>     <profile namespace="globus" key="maxwalltime">0:20:00</profile>
>     <profile namespace="globus" key="workersPerNode">8</profile>
>     <profile namespace="globus" key="ppn">8</profile>
>     <!-- <profile namespace="globus" key="internalHostname">172.5.86.6</profile>-->
>     <profile namespace="globus" key="nodeGranularity">1</profile>
>     <profile namespace="globus" key="maxNodes">5</profile>
>     <profile namespace="karajan" key="jobThrottle">1.99</profile>
>     <profile namespace="karajan" key="initialScore">10000</profile>
>     <profile namespace="globus" key="project">CI-SES000031</profile>
>     <!--gridftp  url="local://localhost" />-->
>     <filesystem provider="local"/>
>     <!--scratch>/home/frankwang/tmp</scratch>-->
>     <workdirectory>/gpfs/pads/projects/CI-SES000031/csm/tempswiftwork</workdirectory>
> </pool>
> </config>
> 
> My tc.data is like, 
> pbs             echo    /bin/echo       INSTALLED       INTEL32::LINUX  null
> pbs             sh      /bin/bash       INSTALLED       INTEL32::LINUX  null
> 
> 
> In my swift script I'm running some gfortran compiled programs(I wrap my fortran programs in sh files), and in my error log file, it shows that
> 
> /gpfs/pads/projects/CI-SES000031/csm/DSSAT040.EXE: error while loading shared libraries: libgfortran.so.3: cannot open shared object file: No such file or directory
> 
> I didn't meet the same problem when I run these on PADS, and after I swap the module to PrgEnv-gnu when logging onto Beagle I can also run this DSSAT040.EXE.
> My guess is,  I submit the jobs to a Non-GNU Environment in Beagle.
> 
> How can I correct this?
> 
> Thank you.
> 
> Weiyang
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