[Swift-user] Argument list to long

[Jonathan Monette]

  Is _swiftseq the wrapper that actually executes the app?  The app in 
Swift eventually has to be executed in the shell correct?  What I am 
trying to see is what is that command line that is submitted to the shell.

On 10/10/10 7:26 PM, Mihael Hategan wrote:
> The arguments are in a parameter file in
> <swift_workdir>/parameters/<jobprefix>/param-<jobid>
>
> The contents looks something like this:
> -scratch
> -e /bin/cat
> -out 0653-out0937.txt
> -err stderr.txt
> -i
> -d
> -if 0653-in.txt
> -of 0653-out0937.txt
> -k
> -cdmfile
> -status files
> -a 0653-in.txt
>
>
> On Sun, 2010-10-10 at 18:42 -0500, Jonathan Monette wrote:
>> correct.  I am getting an error coming from my app.  The arguments
>> that are "supposedly" passed to the app are correct but still get an
>> error.  I wanted to see what the command line to my app actually looks
>> like.  It should be mProject -X "in image" "out image" "header file" but
>> I can't find if Swift is actually calling it like this.
>>
>> On 10/10/10 6:38 PM, Justin M Wozniak wrote:
>>> I put that in there in an attempt to connect the Task id with the
>>> command line.  It's just a logging message, right?
>>>
>>> On Sun, 10 Oct 2010, Jonathan Monette wrote:
>>>
>>>> GridExec TASK_DEFINITION: Task(type=JOB_SUBMISSION,
>>>> identity=urn:0-2-1-1513-3-1-1286751458281) is /bin/bash
>>>> shared/_swiftwrap mProject-23r0czzj\
>>>> -p 2
>>>>
>>>> What does this line mean? I cannot find the portion of code in
>>>> _swiftwrap that process this.
>>>>
>>>> On 10/10/10 5:12 PM, Mihael Hategan wrote:
>>>>> I'm good. Try now.
>>>>>
>>>>> On Sun, 2010-10-10 at 17:09 -0500, Jonathan Monette wrote:
>>>>>> Ok.  If you need anymore of my log files I can gather some up for you.
>>>>>>
>>>>>> On 10/10/10 5:05 PM, Mihael Hategan wrote:
>>>>>>> Ok. I can reproduce this.
>>>>>>>
>>>>>>> It means it wasn't the previous problem.
>>>>>>>
>>>>>>> On Sun, 2010-10-10 at 15:51 -0500, Jonathan Monette wrote:
>>>>>>>> cog is at revision 2910 and swift is at revision 3676.  I have added
>>>>>>>> "wrapper.parameter.mode=files" into my swift.properties.  Here is
>>>>>>>> the
>>>>>>>> output to the screen:
>>>>>>>> RunID: 20101010-1548-ky63yf59
>>>>>>>> Progress:
>>>>>>>> Progress:Progress:Progress:  uninitialized:4
>>>>>>>>       uninitialized:3  uninitialized:4
>>>>>>>>
>>>>>>>> Progress:  Selecting site:4118  Initializing site shared directory:1
>>>>>>>> Progress:  Selecting site:4017  Stage in:101  Submitting:1
>>>>>>>> original callback URI is http://169.254.95.119:37936
>>>>>>>> callback URI has been overridden to http://192.5.86.6:37936
>>>>>>>> Progress:  Selecting site:4017  Submitted:101  Active:1
>>>>>>>> Failed to transfer wrapper log from
>>>>>>>> unrectified-20101010-1548-ky63yf59/info/k on pads
>>>>>>>> Failed to transfer wrapper log from
>>>>>>>> unrectified-20101010-1548-ky63yf59/info/7 on pads
>>>>>>>> Failed to transfer wrapper log from
>>>>>>>> unrectified-20101010-1548-ky63yf59/info/6 on pads
>>>>>>>> Execution failed:
>>>>>>>>         Failed to transfer wrapper log from
>>>>>>>> unrectified-20101010-1548-ky63yf59/info/g on pads
>>>>>>>> Failed to transfer wrapper log from
>>>>>>>> unrectified-20101010-1548-ky63yf59/info/j on pads
>>>>>>>> Failed to transfer wrapper log from
>>>>>>>> unrectified-20101010-1548-ky63yf59/info/t on pads
>>>>>>>> Exception in mProject:
>>>>>>>> Arguments: [-X, raw_dir/2mass-atlas-000218s-j0150091.fits,
>>>>>>>> proj_dir/proj_2mass-atlas-000218s-j0150091.fits, header.hdr]
>>>>>>>> Host: pads
>>>>>>>> Directory:
>>>>>>>> unrectified-20101010-1548-ky63yf59/jobs/6/mProject-6g4u6zzj
>>>>>>>> stderr.txt:
>>>>>>>>
>>>>>>>> stdout.txt:
>>>>>>>>
>>>>>>>> ----
>>>>>>>>
>>>>>>>> Caused by:
>>>>>>>>         Job failed with an exit code of 254
>>>>>>>> Cleaning up...
>>>>>>>>
>>>>>>>> After that coasters just cancels the other jobs.
>>>>>>>>
>>>>>>>> On 10/10/10 3:26 PM, Mihael Hategan wrote:
>>>>>>>>> Can you re-try the current thing with parameter.mode=files and the
>>>>>>>>> latest trunk first?
>>>>>>>>>
>>>>>>>>> On Sun, 2010-10-10 at 15:09 -0500, Jonathan Monette wrote:
>>>>>>>>>> Also, how do I declare the image list as an external type?
>>>>>>>>>>
>>>>>>>>>> On 10/9/10 3:02 PM, Mihael Hategan wrote:
>>>>>>>>>>> On Sat, 2010-10-09 at 20:00 +0000, jon.monette at gmail.com wrote:
>>>>>>>>>>>> What do you mean by manage them independently?
>>>>>>>>>>> I'm not sure. I guess it's whether swift can skip staging them
>>>>>>>>>>> in and
>>>>>>>>>>> stop keeping track of them. But that's pretty much the same as
>>>>>>>>>>> saying
>>>>>>>>>>> they are "external", so it seems circular.
>>>>>>>>>>>
>>>>>>>>>>>
>>>>
>

-- 
Jon

Computers are incredibly fast, accurate, and stupid. Human beings are incredibly slow, inaccurate, and brilliant. Together they are powerful beyond imagination.
- Albert Einstein