[Swift-user] could not initialized shared directory on pbs

[Mihael Hategan]

It may be a good idea to CC the list so that if others run into the same
problem, they can see what the solution is.

On Mon, 2010-01-18 at 17:53 -0600, Antonius Sardjito wrote:
> I tried editing the file but when I run it I encountered a long erros
> at the top there was:
> 
[...]
> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:
> Cannot submit job: Cannot run program "qsub": java.io.IOException:
> error=2, No such file or directory

[...]

Qsub is the standard PBS/Torque (queuing system) submit command. You
should generally have it in your path. If not, edit your ~/.soft file
and make sure the following lines are there:
+maui
+torque

Then save, run "resoft" and try running qsub. Pay attention to errors
that may appear when running "resoft".

> 
> Also the Modis folder is still inaccessible so.. so far I could on
> test what I've done with the data in the sample folder only.

That directory is a symbolic link. If you follow it, you'll see that it
points to /gpfs/pads/projects/see/data/raw/mcd12q1/2002/lct1. Looking
at /etc/fstab, it appears that /gpfs/pads is a mount point, and it
doesn't seem to be mounted.

I would send an email to support at ci.uchicago.edu asking for things to be
restored to their proper state (e.g. "please mount /gpfs/pads on the
pads login nodes").