[Swift-user] Does SWIFT_JOBDIR_PATH work for output?

[Michael Wilde]

Im still unable to get this to work.

For the test case of specifying in sites.xml I have:

<config>
   <pool handle="localhost" sysinfo="INTEL32::LINUX">
     <gridftp url="local://localhost" />
     <execution provider="local" url="none" />
     <workdirectory>/home/wilde/swiftwork/</workdirectory>
   </pool>
<pool handle="bgp000">
    <execution provider="deef" 
url="http://172.16.8.122:50001/wsrf/services/GenericPortal/core/WS/GPFactoryService"/>
    <gridftp url="local://localhost"/>
 
<workdirectory>/intrepid-fs0/users/wilde/persistent/oops/swift/work</workdirectory>
    <profile namespace="karajan" key="jobThrottle">8</profile>
    <profile namespace="karajan" key="initialScore">1000</profile>
    <profile namespace="env" key="SWIFT_JOBDIR_PATH">/dev/shm</profile>
</pool>
</config>

and in the info file I see whats pasted below.

I *thought* this info file is a full wrapper.sh log and includes a 
section listing all the environment vars, so I could verify if 
SWIFT_JOBDIR_PATH made it into the environment.  Can you remind me how 
to turn that on? Cant find it in swift.properties, will check the 
wrapper.sh code.

- Mike


int$ cat ./info/1/runrama-1in2318j-info
Progress  2009-03-16 08:24:53.%N-0500  LOG_START

_____________________________________________________________________________

         Wrapper
_____________________________________________________________________________

Job directory mode is: link on shared filesystem
DIR=jobs/1/runrama-1in2318j
EXEC=/intrepid-fs0/users/wilde/persistent/oops/oops-r055/bin/runrama.sh
STDIN=
STDOUT=output/T1af7/0000_0001.log
STDERR=stderr.txt
DIRS=input/secseq^input/native^input/fasta^secseq/T1af7^input/rama^output/T1af7
INF=input/secseq/T1af7.secseq^input/native/T1af7.pdb^input/fasta/T1af7.fasta^secseq/T1af7/T1af7.0000.secseq^input/rama/T1af7.rama_index^input/rama/T1af7.rama_map
OUTF=output/T1af7/0000_0001.log^output/T1af7/0000_0001.rmsd^output/T1af7/0000_0001.pdt
KICKSTART=
ARGS=input/fasta/T1af7.fasta secseq/T1af7/T1af7.0000.secseq 
input/native/T1af7.pdb input/rama/T1af7.rama_map 
output/T1af7/0000_0001.pdt output/T1af7/0000_0001.rmsd 1 KILL_TIME_=_1
ARGC=8
Progress  2009-03-16 08:24:54.%N-0500  CREATE_JOBDIR
Created job directory: jobs/1/runrama-1in2318j

---



On 3/16/09 8:03 AM, Michael Wilde wrote:
> I discovered I misspelled the var name, and am retesting specifying it 
> from both tc.data and sites.xml.
> 
> On 3/16/09 7:43 AM, Ben Clifford wrote:
>> On Mon, 16 Mar 2009, Michael Wilde wrote:
>>
>>> But for the tests Im doing now this is not a problem.
>>
>> Please indicate what you discover anyway.
>>
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