[Swift-user] cannot find R executable on WNs

[Jing Tie]

Hi,

When running SID application on GROW-UNI-P site, the WN got the wrong R
directory. Here is the detail:

site: GROW-UNI-P
gatekeeper: grow.cs.uni.edu
app_dir: /mnt/nfs/user/worker/app
data_dir: /mnt/nfs/user/worker/data
pbs_dir: /usr/local/bin

output:
-----------------------
Application exception: Job cwtsmall failed with an exit code of 1
        sys:throw @ vdl-int.k , line: 109
        vdl:checkexitcode @ vdl-int.k, line: 370
        vdl:execute2 @ execute-default.k, line: 22
        vdl:execute @ sid-wf1.kml, line: 20
        wavelettransf @ sid-wf1.kml, line: 362
        batchtrials @ sid-wf1.kml, line: 402
        vdl:mains @ sid-wf1.kml, line: 399
cwtsmall failed
Provenance graph saved in sid-wf1-9cs3c2egp8fi1.dot
The following errors have occurred:
1. Application "cwtsmall" failed (Job cwtsmall failed with an exit code of
1)
        Arguments: "scripts/runWaveletsAvg.R, 101, FB"
        Host: GROW-UNI-P
        Directory: sid-wf1-9cs3c2egp8fi1/cwtsmall-33i5bqfi
        STDERR:
        STDOUT:
Errors detected. Cleanup not done.
Execution completed with errors
...
----------------------
globus-job-run cat
/mnt/nfs/user/worker/data/sid-wf1-9cs3c2egp8fi1/cwtsmall-33i5bqfi/runWaveletsAvg.Rout:
/mnt/nfs/user/worker/app/R-2.5.1/lib64/R/bin/R: line 199:
/mnt/nfs/user/worker/app/R- 2.5.1/lib64/R/bin/exec/R: cannot execute binary
file
/mnt/nfs/user/worker/app/R-2.5.1/lib64/R/bin/R: line 199:
/mnt/nfs/user/worker/app/R-2.5.1/lib64/R/bin/exec/R: Success
----------------------

OSG admin has confirmed that there are two different clusters on the back of
this CE. So this might be the reason not finding R execute binary file on
WNs. Should I do some mappings on the CE/WN?

Many thanks,
Jing
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