[Swift-user] Exception in getFile
Mihael Hategan
hategan at mcs.anl.gov
Mon Aug 20 12:52:34 CDT 2007
But those are not from the same job.
On Mon, 2007-08-20 at 12:28 -0500, Jing Tie wrote:
> Yes. I saw 101-FBchannel1_cwt-avgResults.Rdata to
> 101-FBchannel28_cwt-avgResults.Rdata 28 output files on the swift
> client, but all the files were empty.
>
> Jing
>
>
> On 8/20/07, Mihael Hategan <hategan at mcs.anl.gov> wrote:
> On Mon, 2007-08-20 at 12:21 -0500, Jing Tie wrote:
> > Yes. There is no *avgResults.Rdata under shared directory,
> only input
> > file, scripts, wrapper.sh and seq.sh.
>
> Did the job actually run?
>
> >
> > Jing
> >
> > On 8/20/07, Mihael Hategan < hategan at mcs.anl.gov> wrote:
> > Not much we can do if the filesystem is broken.
> > Did you check to confirm that the file is not
> there?
> >
> > Mihael
> >
> > On Mon, 2007-08-20 at 12:07 -0500, Jing Tie wrote:
> > > Hi,
> > >
> > > Here is another problem. It seems like something
> wrong with
> > GFS
> > > system.
> > >
> > > site: MIT_CMS
> > > gatekeeper: ce01.cmsaf.mit.edu
> > > app_dir: /osg/app
> > > data_dir: /osg/data
> > > condor_dir: /usr/local/condor/bin
> > > R_dir: /osg/app/R- 2.5.1/bin/R
> > >
> > > output:
> > > Application exception: Exception in getFile
> > > task:transfer @ vdl-int.k, line: 235
> > > vdl:dostageout @ vdl-int.k, line: 378
> > > vdl:execute2 @ execute-default.k, line: 22
> > > vdl:execute @ sid-wf1.kml, line: 20
> > > wavelettransf @ sid-wf1.kml, line: 362
> > > batchtrials @ sid-wf1.kml, line: 402
> > > vdl:mains @ sid-wf1.kml , line: 399
> > > Caused by:
> >
> org.globus.cog.abstraction.impl.file.FileResourceException:
> > > Exception in getFile
> > > Caused by:
> org.globus.ftp.exception.ServerException: Server
> > refused
> > > performing the request. Custom message: (error
> code
> > 1) cwtsmall
> > > failed
> > > Provenance graph saved in
> sid-wf1-7thy5mbfh09e1.dot
> > > The following errors have occurred:
> > > 1. Application "cwtsmall" failed (Exception in
> getFile
> > > Caused by:
> > > Server refused performing the request. Custom
> > message: (error code
> > > 1)
> > > [Nested exception message: Nested exception is
> > >
> org.globus.ftp.exception.UnexpectedReplyCodeException :
> > > Custom message: Unexpected reply:
> > > 500-Command failed. :
> > >
> globus_gridftp_server_file.c:globus_l_gfs_file_send:2190:
> > > 500-globus_l_gfs_file_open failed.
> > >
> >
> 500-globus_gridftp_server_file.c:globus_l_gfs_file_open:1694:
> > > 500-globus_xio_register_open failed.
> > >
> 500-globus_xio_file_driver.c:globus_l_xio_file_open:438:
> > > 500-Unable to open
> > >
> >
> file /osgfs/data/sid-wf1-7thy5mbfh09e1/shared//101-FBchannel16_cwt- avgResults.Rdata
> > >
> 500-globus_xio_file_driver.c:globus_l_xio_file_open:381:
> > > 500-System error in open: No such file or
> directory
> > > 500-globus_xio: A system call failed: No such file
> or
> > directory
> > > 500 End.])
> > > Arguments: "scripts/runWaveletsAvg.R, 101,
> FB"
> > > Host: UCSDT2
> > > Directory:
> sid-wf1-7thy5mbfh09e1/cwtsmall-mb3l3rfi
> > > STDERR:
> > > STDOUT:
> > > Errors detected. Cleanup not done.
> > > Execution completed with errors
> > > sys:throw @ vdl.k, line: 140
> > > vdl:mains @ sid-wf1.kml, line: 399
> > > at
> > >
> >
> org.globus.cog.karajan.workflow.nodes.FlowNode.fail(FlowNode.java:413)
> > > at
> > >
> >
> org.globus.cog.karajan.workflow.nodes.FlowNode.fail(FlowNode.java:417)
> > > at
> > >
> org.globus.cog.karajan.workflow.nodes.GenerateErrorNode.post
> > > (GenerateErrorNode.java:28)
> > > at
> > >
> >
> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted
> > > at
> > >
> >
> org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java :33)
> > > at
> > >
> > org.globus.cog.karajan.workflow.nodes.FlowNode.event
> (FlowNode.java:334)
> > > at
> > >
> >
> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:123)
> > > at
> >
> org.globus.cog.karajan.workflow.events.EventBus.sendHooked
> > > (EventBus.java:97)
> > > at
> > >
> >
> org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent (FlowNode.java:172)
> > > at
> > >
> >
> org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:298)
> > > at
> > >
> >
> org.globus.cog.karajan.workflow.nodes.functions.AbstractFunction.executeChildren (AbstractFunction.java:37)
> > > at
> > >
> >
> org.globus.cog.karajan.workflow.nodes.FlowContainer.execute(FlowContainer.java:63)
> > > at
> >
> org.globus.cog.karajan.workflow.nodes.FlowNode.restart
> > > (FlowNode.java :239)
> > > at
> > >
> >
> org.globus.cog.karajan.workflow.nodes.FlowNode.start(FlowNode.java :280)
> > > at
> > >
> >
> org.globus.cog.karajan.workflow.nodes.FlowNode.controlEvent(FlowNode.java:392)
> > > at
> >
> org.globus.cog.karajan.workflow.nodes.FlowNode.event
> > > (FlowNode.java:331)
> > > at
> > >
> >
> org.globus.cog.karajan.workflow.FlowElementWrapper.event(FlowElementWrapper.java:227)
> > > at
> > >
> >
> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:123)
> > > at
> >
> org.globus.cog.karajan.workflow.events.EventBus.sendHooked
> > > ( EventBus.java:97)
> > > at
> > >
> org.globus.cog.karajan.workflow.events.EventWorker.run
> > (EventWorker.java:69)
> > >
> > > Many thanks,
> > > Jing
> > > _______________________________________________
> > > Swift-user mailing list
> > > Swift-user at ci.uchicago.edu
> > >
> http://mail.ci.uchicago.edu/mailman/listinfo/swift-user
> >
> >
>
>
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