[Swift-devel] Trunk failing with provenance.log=true

[Luiz Gadelha]

Hi,

I'm getting the error message below when setting the provenance.log 
parameter to true in the latest trunk version. Both scripts I tested 
work with provenance.log disabled.

Regards,

Luiz

$ swift -sites.file sites-vortex.xml -tc.file tc-vortex.data blast.swift 
-d=genes.pep -i=seq3.seq -n=64
Swift trunk swift-r7023 cog-r3768
RunID: 20130903-0731-gg3aup4d
Warning: The @ syntax for function invocation is deprecated
[Error] sites-vortex.xml, line 1, col 9: cvc-elt.1: Cannot find the 
declaration of element 'config'.

Execution failed:
java.lang.UnsupportedOperationException
	k:concat @ swift.k, line: 29
Caused by: java.lang.UnsupportedOperationException
	at k.rt.Sink.getAll(Sink.java:45)
	at org.globus.cog.karajan.util.TypeUtil.toString(TypeUtil.java:201)
	at 
org.globus.cog.karajan.compiled.nodes.functions.Misc$Concat.function(Misc.java:448)
	at 
org.globus.cog.karajan.compiled.nodes.functions.AbstractFunction.runBody(AbstractFunction.java:38)
	at 
org.globus.cog.karajan.compiled.nodes.InternalFunction.run(InternalFunction.java:154)
	at 
org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
	at 
org.globus.cog.karajan.compiled.nodes.InternalFunction.run(InternalFunction.java:147)
	at 
org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
	at org.globus.cog.karajan.compiled.nodes.Sequential.run(Sequential.java:22)
	at 
org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
	at org.globus.cog.karajan.compiled.nodes.Sequential.run(Sequential.java:22)
	at 
org.globus.cog.karajan.compiled.nodes.user.Function.runBody(Function.java:99)
	at 
org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.runBody(InvocationWrapper.java:245)
	at 
org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.run(InvocationWrapper.java:69)
	at 
org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
	at 
org.globus.cog.karajan.compiled.nodes.FramedInternalFunction.run(FramedInternalFunction.java:63)
	at org.globus.cog.karajan.compiled.nodes.Main.run(Main.java:79)
	at k.thr.LWThread.run(LWThread.java:228)
	at 
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
	at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at java.lang.Thread.run(Thread.java:679)


$ swift foreach.swift
Swift trunk swift-r7023 cog-r3768
RunID: 20130903-0755-r4lxbb67
Warning: The @ syntax for function invocation is deprecated
[Error] sites.xml, line 1, col 9: cvc-elt.1: Cannot find the declaration 
of element 'config'.

Execution failed:
java.lang.UnsupportedOperationException
	k:concat @ swift.k, line: 29
Caused by: java.lang.UnsupportedOperationException
	at k.rt.Sink.getAll(Sink.java:45)
	at org.globus.cog.karajan.util.TypeUtil.toString(TypeUtil.java:201)
	at 
org.globus.cog.karajan.compiled.nodes.functions.Misc$Concat.function(Misc.java:448)
	at 
org.globus.cog.karajan.compiled.nodes.functions.AbstractFunction.runBody(AbstractFunction.java:38)
	at 
org.globus.cog.karajan.compiled.nodes.InternalFunction.run(InternalFunction.java:154)
	at 
org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
	at 
org.globus.cog.karajan.compiled.nodes.InternalFunction.run(InternalFunction.java:147)
	at 
org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
	at org.globus.cog.karajan.compiled.nodes.Sequential.run(Sequential.java:22)
	at 
org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
	at org.globus.cog.karajan.compiled.nodes.Sequential.run(Sequential.java:22)
	at 
org.globus.cog.karajan.compiled.nodes.user.Function.runBody(Function.java:99)
	at 
org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.runBody(InvocationWrapper.java:245)
	at 
org.globus.cog.karajan.compiled.nodes.user.InvocationWrapper.run(InvocationWrapper.java:69)
	at 
org.globus.cog.karajan.compiled.nodes.CompoundNode.runChild(CompoundNode.java:87)
	at 
org.globus.cog.karajan.compiled.nodes.FramedInternalFunction.run(FramedInternalFunction.java:63)
	at org.globus.cog.karajan.compiled.nodes.Main.run(Main.java:79)
	at k.thr.LWThread.run(LWThread.java:228)
	at 
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1146)
	at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at java.lang.Thread.run(Thread.java:679)

-- 
Luiz Gadelha
http://www.lncc.br/~lgadelha