[Swift-devel] MODIS freezes on Midway

[Michael Wilde]

Also the code is now in svn:

  https://svn.ci.uchicago.edu/svn/vdl2/SwiftTutorials/OSG_2013-03-11/MODIS

- Mike

----- Original Message -----
> From: "David Kelly" <davidk at ci.uchicago.edu>
> To: "Yadu Nand" <yadudoc1729 at gmail.com>
> Cc: "swift-devel" <swift-devel at ci.uchicago.edu>, "Michael Wilde" <wilde at mcs.anl.gov>
> Sent: Wednesday, March 20, 2013 2:05:56 PM
> Subject: Re: [Swift-devel] MODIS freezes on Midway
> 
> 
> Yadu,
> 
> 
> As a test, I just untarred swiftdemo.v04.tgz, removed the
> SBATCH_RESERVATION line from setup.sh and was able to run on midway.
> Send me a message on Skype when you have a few minutes and we can
> take a closer look at this.
> 
> David
> 
> 
> ----- Original Message -----
> 
> 
> From: "Yadu Nand" <yadudoc1729 at gmail.com>
> To: "Michael Wilde" <wilde at mcs.anl.gov>
> Cc: "swift-devel" <swift-devel at ci.uchicago.edu>
> Sent: Wednesday, March 20, 2013 12:19:01 PM
> Subject: Re: [Swift-devel] MODIS freezes on Midway
> 
> Hi everyone,
> 
> 
> David, please find the submit files attached to the mail.
> I am running the 5 different variants of modis,
> (local,midway,beagle,uc3, multiple)
> from the test system we have. I am not setting the SBATCH_RESERVATION
> variable
> in the setup scripts.
> 
> 
> Ketan, for modis_local and modis_midway, I am setting <filesystem
> provider="local"/>
> and interestingly, modis_local works fine from the stress test apps
> group now, the rest
> fail though. I think there is a different issue here now.
> 
> 
> It looks like most failures I'm seeing now is from perl and tc.data
> issues. I've attached the
> modis.stdout from the 5 testcases, if you'd like to take a look. The
> tc.data supplied is the
> same as the ones that came with swiftdemo.
> 
> 
> -Yadu
> 
> 
> 
> 
> On Wed, Mar 20, 2013 at 5:26 AM, Michael Wilde < wilde at mcs.anl.gov >
> wrote:
> 
> 
> Likely not needed if its using provider staging.
> 
> 
> ----- Original Message -----
> > From: "Ketan Maheshwari" < ketancmaheshwari at gmail.com >
> > To: "David Kelly" < davidk at ci.uchicago.edu >
> > Cc: "swift-devel" < swift-devel at ci.uchicago.edu >
> > Sent: Tuesday, March 19, 2013 6:04:44 PM
> > Subject: Re: [Swift-devel] MODIS freezes on Midway
> > 
> > 
> > 
> > In addition to what David mentioned, from logs, it seems that your
> > sites file is missing this line:
> > 
> > 
> > <filesystem provider="local"/>
> > 
> > 
> > 
> > Or David, correct me if this is not required in this configuration.
> > 
> > 
> > 
> > On Tue, Mar 19, 2013 at 6:00 PM, David Kelly <
> > davidk at ci.uchicago.edu
> > > wrote:
> > 
> > 
> > 
> > 
> > Yadu,
> > 
> > 
> > The setup.sh script sets this environment variable:
> > 
> > 
> > export SBATCH_RESERVATION=osg
> > 
> > 
> > I believe sbatch is picking up on this and trying to run with this
> > reservation, which is likely expired. Can you try unsetting
> > SBATCH_RESERVATION, commenting out that line in setup.sh and trying
> > again?
> > 
> > 
> > Thanks,
> > David
> > 
> > 
> > 
> > 
> 
> 
> > From: "Yadu Nand" < yadudoc1729 at gmail.com >
> > To: "swift-devel" < swift-devel at ci.uchicago.edu >
> > Sent: Tuesday, March 19, 2013 5:35:41 PM
> > Subject: [Swift-devel] MODIS freezes on Midway
> > 
> > 
> > 
> > 
> > Hi,
> > 
> > I've been running the modis tests on Midway, from the demo that
> > mike
> > had shared:
> > 
> > /home/wilde/osgdemo/modis/svn/swiftdemo.v04.tgz
> > 
> > 
> > In the logs(please see attachment) I see a fail message : " sbatch:
> > error: Batch job
> > submission failed: Requested reservation is i nvalid"
> > 
> > 
> > The fact that no error messages are shown on stdout doesn't help,
> > plus, swift just
> > seems to hang forever. * Please help! *
> > 
> > 
> > I see test.midway show no progress, with just the same status for
> > about 20mins:
> > 
> > Progress: time: Tue, 19 Mar 2013 20:21:18 +0000 Selecting site:35
> > Submitted:65
> > 
> > 
> > After this, I tried to kill by Ctrl+C and then I get a few error
> > messages :
> > 
> > Failed to shut down block: Block 0319-5807480-000000 (16x3540.000s)
> > org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:
> > Can only cancel an active task
> > at
> > org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.cancel(AbstractExecutor.java:196)
> > at
> > org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.cancel(AbstractJobSubmissionTaskHandler.java:85)
> > at
> > org.globus.cog.abstraction.impl.common.AbstractTaskHandler.cancel(AbstractTaskHandler.java:69)
> > at
> > org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:106)
> > at
> > org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:95)
> > at
> > org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.cancel(BlockTaskSubmitter.java:46)
> > at
> > org.globus.cog.abstraction.coaster.service.job.manager.Block.forceShutdown(Block.java:332)
> > at
> > org.globus.cog.abstraction.coaster.service.job.manager.Block.shutdown(Block.java:312)
> > at
> > org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.shutdownBlocks(BlockQueueProcessor.java:800)
> > at
> > org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.shutdown(BlockQueueProcessor.java:789)
> > at
> > org.globus.cog.abstraction.coaster.service.job.manager.JobQueue.shutdown(JobQueue.java:119)
> > at
> > org.globus.cog.abstraction.coaster.service.CoasterService.shutdown(CoasterService.java:271)
> > at
> > org.globus.cog.abstraction.coaster.service.ServiceShutdownHandler.requestComplete(ServiceShutdownHandler.java:28)
> > at
> > org.globus.cog.karajan.workflow.service.handlers.RequestHandler.receiveCompleted(RequestHandler.java:88)
> > at
> > org.globus.cog.karajan.workflow.service.channels.AbstractKarajanChannel.handleRequest(AbstractKarajanChannel.java:519)
> > at
> > org.globus.cog.karajan.workflow.service.channels.AbstractPipedChannel.actualSend(AbstractPipedChannel.java:86)
> > at
> > org.globus.cog.karajan.workflow.service.channels.AbstractPipedChannel$Sender.run(AbstractPipedChannel.java:115)
> > /home/wilde/osgdemo/modis/svn/swiftdemo.v04.tgz
> > 
> > --
> > Yadu Nand B
> > _______________________________________________
> > Swift-devel mailing list
> > Swift-devel at ci.uchicago.edu
> > https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-devel
> > 
> > 
> > _______________________________________________
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> > 
> > 
> > 
> > 
> > 
> > --
> > Ketan
> > 
> > 
> > _______________________________________________
> > Swift-devel mailing list
> > Swift-devel at ci.uchicago.edu
> > https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-devel
> > 
> _______________________________________________
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> 
> 
> 
> --
> Yadu Nand B
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>