[Swift-devel] using a reservation
Jonathan Monette
jonmon at mcs.anl.gov
Wed Mar 21 18:30:14 CDT 2012
Hello,
I am trying to use a reservation I have on Beagle. Here is my sites file:
<config>
<pool handle="local" >
<execution provider="local" url="none" />
<profile namespace="karajan" key="jobThrottle">0.5</profile>
<profile namespace="karajan" key="initialScore">10000</profile>
<filesystem provider="local"/>
<workdirectory>_WORK_/local</workdirectory>
</pool>
<pool handle="beagleRes">
<execution provider="coaster" jobmanager="local:pbs"/>
<profile namespace="env" key="SWIFT_GEN_SCRIPTS">KEEP</profile>
<profile namespace="globus" key="project">CI-MCB000119</profile>
<profile namespace="globus" key="jobsPerNode">1</profile>
<profile namespace="globus" key="workerLoggingLevel">DEBUG</profile>
<profile namespace="globus" key="workerLoggingDirectory">_WORK_/beagleRes/workers</profile>
<profile namespace="globus" key="lowOverAllocation">100</profile>
<profile namespace="globus" key="highOverAllocation">100</profile>
<profile namespace="globus" key="providerAttributes">pbs.aprun;pbs.mpp;depth=24</profile>
<profile namespace="globus" key="maxTime">86400</profile>
<profile namespace="globus" key="waxWallTime">00:04:00</profile>
<profile namespace="globus" key="slots">1</profile>
<profile namespace="globus" key="nodeGranularity">20</profile>
<profile namespace="globus" key="maxNodes">20</profile>
<profile namespace="globus" key="pbs.properties">advres=18833.687</profile>
<profile namespace="karajan" key="jobThrottle">12.00</profile>
<profile namespace="karajan" key="initialScore">10000</profile>
<filesystem provider="local"/>
<workdirectory>_WORK_/beagleRes</workdirectory>
</pool>
</config>
I have tried both pbs.properties and pbs.resources as a sites entry, I got this information from https://sites.google.com/site/swiftdevel/sites/pbs
However here is the pbs script that has been generated:
#CoG This script generated by CoG
#CoG by class: class org.globus.cog.abstraction.impl.scheduler.pbs.PBSExecutor
#CoG on date: 2012/03/21 23:22:35
#PBS -S /bin/bash
#PBS -N Block-0321-2211
#PBS -m n
#PBS -A CI-MCB000119
#PBS -l mppwidth=20,mppnppn=1,mppdepth=24
#PBS -l walltime=17:00:00
#PBS -o /home/jonmon/.globus/scripts/PBS1332885235909759395.submit.stdout
#PBS -e /home/jonmon/.globus/scripts/PBS1332885235909759395.submit.stderr
WORKER_LOGGING_LEVEL=DEBUG
#PBS -v WORKER_LOGGING_LEVEL
cd / && aprun -n 20 -N 1 -cc none -d 24 -F exclusive /bin/sh -c '/usr/bin/perl /home/jonmon/.globus/coasters/cscript9177561070598799820.pl http://10.128.2.243:40904,http://127.0.0.2:40904,http://192.5.86.103:40904 0321-221135-000000 /lustre/beagle/jonmon/Swift/SciColSim/run163/swiftwork/beagleRes/workers'
/bin/echo $? >/home/jonmon/.globus/scripts/PBS1332885235909759395.submit.exitcode
I have asked for a coaster block of 24 hours(my reservation is 96 hours) but it shows a wall time of 17 hours. Furthermore, the line #PBS -l advres=<res_id> is missing so I am not using my reservation, I just get added to the batch queue and sit there. Does any remember how to specify a reservation in the sites file for PBS?
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