[Swift-devel] [Swift-user] gram on ranger

Mihael Hategan hategan at mcs.anl.gov
Wed Oct 12 14:13:44 CDT 2011


On Tue, 2011-10-11 at 17:13 -0700, Sarah Kenny wrote:
> 
> 
> On Tue, Oct 11, 2011 at 4:23 PM, Mihael Hategan <hategan at mcs.anl.gov>
> wrote:
>         Is this with a persistent coaster service?
> 
> admittedly i have not used persistent coaster service...should i?

No. I was just trying to figure out whether it might be something
related to the persistent version.

>  i feel like it's documented *somewhere* (?)
> 
> for now i've tried setting 'sitedir.keep=true' in the config so maybe
> it won't try to run the cleanup job...we'll see (waiting in q)
>  
>         
>         
>         On Tue, 2011-10-11 at 12:05 -0700, Sarah Kenny wrote:
>         >
>         >
>         > On Tue, Oct 11, 2011 at 11:49 AM, David Kelly
>         <davidk at ci.uchicago.edu>
>         > wrote:
>         >
>         >         That could be it.. maybe a cleanup script is not
>         getting the
>         >         right parameters and failing. Do you happen to have
>         a copy of
>         >         the coaster log?
>         >
>         > just put it in /home/skenny/swift_logs
>         >
>         >
>         >         Maybe there will be some clues in there.
>         >
>         >         ----- Original Message -----
>         >         > From: "Sarah Kenny" <skenny at uchicago.edu>
>         >
>         >         > To: "David Kelly" <davidk at ci.uchicago.edu>
>         >         > Cc: "Swift Devel" <swift-devel at ci.uchicago.edu>,
>         "Swift
>         >         User" <swift-user at ci.uchicago.edu>, "Justin M
>         Wozniak"
>         >         > <wozniak at mcs.anl.gov>
>         >
>         >         > Sent: Tuesday, October 11, 2011 1:32:37 PM
>         >         > Subject: Re: [Swift-user] gram on ranger
>         >
>         >         > so, this workflow completes all the jobs but then
>         just hangs
>         >         > indefinitely at the end...maybe a stray cleanup
>         job?
>         >         >
>         >         > log is here:
>         >         >
>         >
>         > /home/skenny/swift_logs/corr-20111010-2104-fl5yngd9.log
>         >         >
>         >         > just tweaked the sites file a bit from what david
>         sent me:
>         >         >
>         >         > <config>
>         >         > <pool handle="RANGER">
>         >         > <execution provider="coaster" jobManager="gt2:SGE"
>         url="
>         >         > gatekeeper.ranger.tacc.teragrid.org "/>
>         >         > <filesystem provider="gsiftp" url="gsiftp://
>         >
>         >         > gridftp.ranger.tacc.teragrid.org "/>
>         >
>         >         > <profile namespace="globus"
>         key="maxtime">28800</profile>
>         >         > <profile namespace="globus"
>         >         key="maxWallTime">00:15:00</profile>
>         >         > <profile namespace="globus"
>         key="jobsPerNode">1</profile>
>         >         > <profile namespace="globus"
>         >         key="nodeGranularity">64</profile>
>         >         > <profile namespace="globus"
>         key="maxNodes">256</profile>
>         >         > <profile namespace="globus"
>         key="queue">normal</profile>
>         >         > <profile namespace="karajan"
>         key="jobThrottle">1</profile>
>         >         > <profile namespace="globus"
>         >         key="project">TG-DBS080004N</profile>
>         >         > <profile namespace="globus"
>         key="pe">16way</profile>
>         >         > <profile namespace="karajan"
>         >         key="initialScore">10000</profile>
>         >         >
>         >
>         <workdirectory>/work/00043/tg457040/sidgrid_out/skenny</workdirectory>
>         >         > </pool>
>         >         > </config>
>         >         >
>         >         >
>         >         >
>         >         > On Mon, Oct 10, 2011 at 3:43 PM, Sarah Kenny <
>         >         skenny at uchicago.edu >
>         >         > wrote:
>         >         >
>         >         >
>         >         > ok, thanks, got in the queue now...also, realized
>         my last
>         >         run may have
>         >         > been using the old swift. apparently i had
>         SWIFT_HOME set in
>         >         my env
>         >         > and that overrides the newer swift i had set in my
>         PATH.
>         >         >
>         >         > ~sk
>         >         >
>         >         >
>         >         >
>         >         > On Mon, Oct 10, 2011 at 12:28 PM, David Kelly <
>         >         davidk at ci.uchicago.edu
>         >         > > wrote:
>         >         >
>         >         >
>         >         >
>         >         >
>         >         >
>         >         > Sarah,
>         >         >
>         >         > Can you give this another try with the latest
>         0.93? I made
>         >         some
>         >         > changes to the coaster and sge providers and was
>         able to get
>         >         it
>         >         > working with a simple catns script. Here is the
>         >         configuration file I
>         >         > was using:
>         >         >
>         >         > <config>
>         >         > <pool handle="ranger">
>         >         > <execution provider="coaster" jobManager="gt2:SGE"
>         url="
>         >         > gatekeeper.ranger.tacc.teragrid.org "/>
>         >         >
>         >         > <filesystem provider="gsiftp" url="gsiftp://
>         >
>         >         > gridftp.ranger.tacc.teragrid.org "/>
>         >
>         >         > <profile namespace="globus"
>         key="maxtime">3600</profile>
>         >         > <profile namespace="globus"
>         >         key="maxWallTime">00:00:03</profile>
>         >         > <profile namespace="globus"
>         key="jobsPerNode">1</profile>
>         >         > <profile namespace="globus"
>         >         key="nodeGranularity">16</profile>
>         >         > <profile namespace="globus"
>         key="maxNodes">16</profile>
>         >         > <profile namespace="globus"
>         >         key="queue">development</profile>
>         >         > <profile namespace="karajan"
>         key="jobThrottle">0.9</profile>
>         >         >
>         >         > <profile namespace="globus"
>         >         key="project">TG-DBS080004N</profile>
>         >         >
>         >         > <profile namespace="globus"
>         key="pe">16way</profile>
>         >         >
>         >
>         <workdirectory>/share/home/01503/davidkel/swiftwork</workdirectory>
>         >         > </pool>
>         >         > </config>
>         >         >
>         >         > Thanks,
>         >         >
>         >         > David
>         >         >
>         >         > ----- Original Message -----
>         >         >
>         >         > > From: "Sarah Kenny" < skenny at uchicago.edu >
>         >         > > To: "Justin M Wozniak" < wozniak at mcs.anl.gov >
>         >         > > Cc: "Swift Devel" < swift-devel at ci.uchicago.edu
>         >, "Swift
>         >         User" <
>         >         > > swift-user at ci.uchicago.edu >
>         >         >
>         >         >
>         >         >
>         >         > > Sent: Friday, October 7, 2011 3:13:57 PM
>         >         > > Subject: Re: [Swift-user] gram on ranger
>         >         >
>         > /home/skenny/swift_logs/dummy-20111005-0126-6575n7x5.log
>         >         > >
>         >         > > on ci
>         >         > >
>         >         > >
>         >         > > On Fri, Oct 7, 2011 at 8:16 AM, Justin M Wozniak
>         <
>         >         > > wozniak at mcs.anl.gov
>         >         > > > wrote:
>         >         > >
>         >         > >
>         >         > >
>         >         > > Can I take a look at the log?
>         >         > >
>         >         > >
>         >         > >
>         >         > >
>         >         > > On Thu, 6 Oct 2011, Sarah Kenny wrote:
>         >         > >
>         >         > >
>         >         > >
>         >         > > hey all, i'm trying to submit to gram on ranger
>         using the
>         >         latest
>         >         > > swift
>         >         > > (built from trunk). it failes like so:
>         >         > >
>         >         > > Cannot submit job
>         >         > > Caused by:
>         >         > > org.globus.cog.abstraction. impl.common.task.
>         >         > > TaskSubmissionException:
>         >         > > Cannot
>         >         > > submit job
>         >         > > Caused by: org.globus.gram.GramException:
>         Parameter not
>         >         supported
>         >         > > Cannot submit job
>         >         > >
>         >         > > the gram log was saying first that 'jobsPerNode'
>         is not
>         >         supported so
>         >         > > i
>         >         > > changed it to workersPerNode and then it was
>         saying
>         >         'maxnodes' is
>         >         > > not
>         >         > > supported. here's my sites file:
>         >         > >
>         >         > > <config>
>         >         > > <pool handle="RANGER">
>         >         > > <profile namespace="karajan"
>         key="initialScore">10000</
>         >         profile>
>         >         > > <profile namespace="karajan"
>         key="jobThrottle">1</profile>
>         >         > > <profile namespace="globus"
>         key="maxWallTime">00:15:00</
>         >         profile>
>         >         > > <profile namespace="globus"
>         key="maxTime">86400</profile>
>         >         > > <profile namespace="globus"
>         key="slots">1</profile>
>         >         > > <profile namespace="globus"
>         key="maxNodes">256</profile>
>         >         > > <profile namespace="globus"
>         key="pe">16way</profile>
>         >         > > <profile namespace="globus"
>         key="workersPerNode">1</
>         >         profile>
>         >         > > <profile namespace="globus"
>         key="nodeGranularity">64</
>         >         profile>
>         >         > > <profile namespace="globus"
>         key="queue">normal</profile>
>         >         > > <profile namespace="globus"
>         key="project">TG-DBS080004N</
>         >         profile>
>         >         > > <filesystem provider="gsiftp" url="gsiftp://
>         >         > > gridftp.ranger.tacc.teragrid. org "/>
>         >         >
>         >         > > <execution provider="coaster"
>         jobManager="gt2:gt2:SGE"
>         >         url="
>         >         > > gatekeeper.ranger.tacc. teragrid.org "/>
>         >         >
>         >         > > <execution provider="gt2" jobManager="SGE" url="
>         >         > > gatekeeper.ranger.tacc. teragrid.org "/>
>         >         > > <workdirectory>/work/00043/
>         tg457040</workdirectory>
>         >         >
>         >         > > </pool>
>         >         > > </config>
>         >         > >
>         >         > > thoughts? ideas?
>         >         > >
>         >         > > --
>         >         > > Justin M Wozniak
>         >         > >
>         >         > >
>         >         > >
>         >         > > --
>         >         > > Sarah Kenny
>         >         > > Programmer ~ Brain Circuits Laboratory ~ Rm 2224
>         Bio Sci
>         >         III
>         >         > > University of California Irvine, Dept. of
>         Neurology ~
>         >         773-818-8300
>         >         > >
>         >         > >
>         >         > > _______________________________________________
>         >         > > Swift-user mailing list
>         >         > > Swift-user at ci.uchicago.edu
>         >         > >
>         >
>         https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user
>         >         >
>         >         >
>         >         >
>         >         >
>         >         >
>         >         >
>         >         > --
>         >         > Sarah Kenny
>         >         > Programmer ~ Brain Circuits Laboratory ~ Rm 2224
>         Bio Sci III
>         >         > University of California Irvine, Dept. of
>         Neurology ~
>         >         773-818-8300
>         >         >
>         >         >
>         >         >
>         >         >
>         >         > --
>         >         > Sarah Kenny
>         >         > Programmer ~ Brain Circuits Laboratory ~ Rm 2224
>         Bio Sci III
>         >         > University of California Irvine, Dept. of
>         Neurology ~
>         >         773-818-8300
>         >
>         >
>         >
>         >
>         > --
>         > Sarah Kenny
>         > Programmer ~ Brain Circuits Laboratory ~ Rm 2224 Bio Sci III
>         > University of California Irvine, Dept. of Neurology ~
>         773-818-8300
>         >
>         > _______________________________________________
>         > Swift-user mailing list
>         > Swift-user at ci.uchicago.edu
>         >
>         https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user
>         
>         
>         
> 
> 
> 
> -- 
> Sarah Kenny
> Programmer ~ Brain Circuits Laboratory ~ Rm 2224 Bio Sci III
> University of California Irvine, Dept. of Neurology ~ 773-818-8300
> 





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