[Swift-devel] recent trunk changes swift parsing

[Mihael Hategan]

Can you post a stack trace or a pointer to the log?

On Fri, 2011-05-20 at 15:14 -0500, ketan wrote:
> I updated trunk and seems swift parsing has changed a bit?
> 
> I see this:
> 
> Swift svn swift-r4502 cog-r3128 (cog modified locally)
> 
> RunID: 20110520-2005-kst5ztsf
> Progress:  time: Fri, 20 May 2011 20:05:51 +0000
> SwiftScript trace: str_roots.[0]:string = 3lyv-4 - Closed
> Execution failed:
>      For input string: "3.0"
> 
> 
> for my this swift:
> 
> type file_pdb;
> type file_dat;
> 
> app (file_dat dat_file)
>    do_one_dock(
>        string        param_root,
>        string        param_modulo,
>        file_pdb param_file_static,
>        file_pdb param_file_mobile )
> {
>    modftdock 32
>              "-modulo" @param_modulo
>              "-root"   @param_root
>              "-static" @param_file_static
>              "-mobile" @param_file_mobile
>              "-calculate_grid" @arg("grid","2.5")
>              "-angle_step" "10"
>              "-keep" "10"
>              "-noelec";
> }
> 
> string modulus = @arg("m","100");
> string str_roots[] = readData( @arg( "list" ) );
> 
> foreach str_root in str_roots
> {
>    trace( str_root );
> 
>    string str_file_static = @strcat( "input/", str_root, ".pdb" );
>    string str_file_mobile = "input/4TRA.pdb";
> 
>    file_pdb file_static < single_file_mapper; file = str_file_static >;
>    file_pdb file_mobile < single_file_mapper; file = str_file_mobile >;
>    file_dat dat_files[] < simple_mapper;
>                                padding = 3,
>                                location = "output",
>                    prefix  = @strcat( str_root, "_" ),
>                    suffix  = ".dat" >;
> 
>    // break docking jobs + do 'em in parallel
>    int n = @toint(@arg("n","1"));
>    foreach mod_index in [0:n-1]
>    {
>      string str_modulo = @strcat(mod_index, ":", modulus);
>      dat_files[ mod_index ] = do_one_dock( str_root,
>                        str_modulo,
>                        file_static,
>                        file_mobile );
>    }
> }
> 
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