[Swift-devel] error in Swift

[Jonathan Monette]

Alright.  I will give it a try today.

On Jun 23, 2011, at 1:29 PM, Mihael Hategan wrote:

> This was present when using provider staging. Fixed in r4667.
> 
> On Tue, 2011-06-21 at 15:34 -0500, Jonathan Monette wrote:
>> Hello,
>>   I found an error when Swift creates the command line script it uses to execute.  Here is the script:
>> 
>> #!/bin/bash
>> "/home/jonmon/Library/Montage/bin/mProject" "[-X, raw_dir/raw_image_4.fits, proj_dir/proj_raw_image_4.fits, header.hdr]" 1>"stdout.txt" 2>"stderr.txt"
>> 
>> 
>> That script was generated by Swift.  The "[", "]", and "," are not supposed to be there.  
>> 
>> Here is the config file and sites file:
>> execution.retries=0
>> sitedir.keep=true
>> status.mode=provider
>> wrapper.log.always.transfer=true
>> foreach.maxthreads=1024
>> wrapper.parameter.mode=files
>> use.provider.staging=true
>> provider.staging.pin.swiftfiles=false
>> 
>> <config>
>> <pool handle="localhost">
>>   <execution provider="local" />
>>   <filesystem provider="local" />
>>   <workdirectory>/gpfs/pads/swift/jonmon/Swift/work/localhost</workdirectory>
>> 
>>   <profile namespace="karajan" key="jobThrottle">.05</profile>
>> 
>>   <profile namespace="env" key="SWIFT_GEN_SCRIPTS">KEEP</profile>
>> </pool>
>> <pool handle="pads">
>>     <execution provider="coaster" jobmanager="ssh:pbs" url="login.pads.ci.uchicago.edu" />
>>     <filesystem provider="local" />
>>     <profile namespace="globus" key="project">CI-CCR000013</profile>
>>     <workdirectory>/gpfs/pads/swift/jonmon/Swift/work/pads</workdirectory>
>> 
>>     <profile namespace="globus" key="maxtime">3600</profile>
>>     <profile namespace="globus" key="jobsPerNode">1</profile>
>>     <profile namespace="globus" key="slots">500</profile>
>>     <profile namespace="globus" key="nodeGranularity">1</profile>
>>     <profile namespace="globus" key="maxNodes">1</profile>
>>     <profile namespace="globus" key="queue">fast</profile>
>> 
>>     <profile namespace="karajan" key="jobThrottle">5</profile>
>>     <profile namespace="karajan" key="initialScore">10000</profile>
>> 
>>     <profile namespace="env" key="SWIFT_GEN_SCRIPTS">KEEP</profile>
>> </pool>
>> </config>
>> 
>> attached is the log file.  The error that was reported came from the app call.  It said the wrong usage because the command line had those extra symbols in them.  I have a feeling it has something to do with the last two lines in the config file but I am basing that completely on the fact that if I remove those two line the scripts run to completion.
>> 
>> 
> 
>