[Swift-devel] Fwd: trunk FileNotFoundException

[Mihael Hategan]

Is provider staging on?

On Tue, 2011-07-12 at 14:16 -0500, Ketan Maheshwari wrote:
> Mihael,
> 
> I tried to further investigate the issue and from the logs it seems
> that Swift is trying to execute the mkoffset app before creating a
> jobs/ directory in workdir. Could it be that this is an ordering
> issue. For instance, I see the following line:
> 
> 2011-07-12 13:50:49,559-0500 DEBUG vdl:execute2 JOB_START
> jobid=mkoffset-mex8fvck tr=mkoffset arguments=[200.0, 60.0]
> tmpdir=postproc-20110712-1343-eczky6ob/jobs/m/mkoffset-mex8fvck
> host=localhost
> 
> but do not see a createdir corresponding to above.
> 
> I have ran this workflow successfully with 0.92.1 so, I am pretty sure
> that it works correctly as far as order of execution is concerned.
> 
> Thanks for any more insights into this.
> 
> Regards,
> Ketan
> 
> ---------- Forwarded message ----------
> From: Ketan Maheshwari <ketancmaheshwari at gmail.com>
> Date: Mon, Jul 11, 2011 at 10:31 PM
> Subject: trunk FileNotFoundException
> To: swift-user at ci.uchicago.edu
> 
> 
> Hello,
> 
> Using Swift trunk, I am running the SCEC workflow from Communicado
> using ranger, localhost and OSG resources.
> 
> One particular app 'mkoffset' which is destined to run on localhost is
> faulting with FileNotFoundException. 
> 
> The log does give information on its mapping and when it gets
> 'cleared'. 
> 
> The config, tc, sites and log files for the run could be found here:
> http://www.mcs.anl.gov/~ketan/files/bundle.tgz (log is 90M, upload
> size exceeded!)
> 
> The error stack that I am getting on stdout is:
> 
> Progress:  time: Mon, 11 Jul 2011 22:16:38 -0500  Selecting site:390
> Stage in:16  Active:9  Checking status:1  Finished successfully:36
> Failed but can retry:3
> org.globus.cog.abstraction.impl.file.FileNotFoundException: File not
> found: /var/tmp/postproc-20110711-2209-bx2qm0nb/jobs/e/mkoffset-ea7xcuck/stderr.txt
>     at
> org.globus.cog.abstraction.impl.file.local.FileResourceImpl.getFile(FileResourceImpl.java:225)
>     at
> org.globus.cog.abstraction.impl.file.local.FileResourceImpl.putFile(FileResourceImpl.java:268)
>     at
> org.globus.cog.abstraction.impl.file.AbstractFileResource.putFile(AbstractFileResource.java:158)
>     at
> org.globus.cog.abstraction.impl.fileTransfer.DelegatedFileTransferHandler.doDestination(DelegatedFileTransferHandler.java:314)
>     at
> org.globus.cog.abstraction.impl.fileTransfer.CachingDelegatedFileTransferHandler.doDestination(CachingDelegatedFileTransferHandler.java:46)
>     at
> org.globus.cog.abstraction.impl.fileTransfer.DelegatedFileTransferHandler.run(DelegatedFileTransferHandler.java:487)
>     at java.lang.Thread.run(Thread.java:619)
> org.globus.cog.abstraction.impl.file.FileNotFoundException: File not
> found: /var/tmp/postproc-20110711-2209-bx2qm0nb/jobs/e/mkoffset-ea7xcuck/LGU/offset-128
>     at
> org.globus.cog.abstraction.impl.file.local.FileResourceImpl.getFile(FileResourceImpl.java:225)
>     at
> org.globus.cog.abstraction.impl.file.local.FileResourceImpl.putFile(FileResourceImpl.java:268)
>     at
> org.globus.cog.abstraction.impl.file.AbstractFileResource.putFile(AbstractFileResource.java:158)
>     at
> org.globus.cog.abstraction.impl.fileTransfer.DelegatedFileTransferHandler.doDestination(DelegatedFileTransferHandler.java:314)
>     at
> org.globus.cog.abstraction.impl.fileTransfer.CachingDelegatedFileTransferHandler.doDestination(CachingDelegatedFileTransferHandler.java:46)
>     at
> org.globus.cog.abstraction.impl.fileTransfer.DelegatedFileTransferHandler.run(DelegatedFileTransferHandler.java:487)
>     at java.lang.Thread.run(Thread.java:619)
> Progress:  time: Mon, 11 Jul 2011 22:16:39 -0500  Selecting site:389
> Stage in:16  Active:9  Checking status:1  Finished successfully:38
> Failed but can retry:4
> Execution failed:
>     java.lang.NullPointerException
>     at
> org.griphyn.vdl.mapping.AbstractDataNode.getValue(AbstractDataNode.java:333)
>     at
> org.griphyn.vdl.karajan.lib.SetFieldValue.log(SetFieldValue.java:71)
>     at
> org.griphyn.vdl.karajan.lib.SetFieldValue.function(SetFieldValue.java:38)
>     at
> org.griphyn.vdl.karajan.lib.VDLFunction.post(VDLFunction.java:62)
>     at
> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.completed(AbstractSequentialWithArguments.java:194)
>     at
> org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:214)
>     at
> org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58)
>     at
> org.globus.cog.karajan.workflow.nodes.functions.Argument.post(Argument.java:48)
>     at
> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.completed(AbstractSequentialWithArguments.java:194)
>     at
> org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:214)
>     at
> org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58)
>     at
> org.griphyn.vdl.karajan.lib.VDLFunction.post(VDLFunction.java:66)
>     at
> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.completed(AbstractSequentialWithArguments.java:194)
>     at
> org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:214)
>     at
> org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58)
> 
> 
> Any clues?
> 
> Thanks,
> -- 
> Ketan
> 
> 
> 
> 
> 
> 
> -- 
> Ketan
> 
>