[Swift-devel] Fwd: NumberFormatException

Tue Jul 12 15:59:43 CDT 2011

How does this syntax look when mapping with the GSIURI?  How does it work?  I am still getting errors when trying to map a file with a GSIURI.  It says file not found.  Maybe I have a different understanding on how it works.

The files and the logs are in ~jonmon/run.0001 on the ci machines.

On Jul 12, 2011, at 2:16 AM, Mihael Hategan wrote:

> You have a colon after the host name but no port. Either remove the
> colon or put a number after it.
> 
> On Mon, 2011-07-11 at 22:45 -0500, Jonathan Monette wrote:
>> I actually meant to send this to swift-devel.
>> 
>> 
>> Here is the background to the problem.  I have data on PADS, I am
>> executing Swift on a VM, and I want to use OSG to compute with the
>> data.  Before Mike left for vacation he said that you can map data in
>> Swift using the GSIURI scheme but he did not tell me how.  What I did
>> below is 
>> 
>> 
>> file
>> data<"gsiftp://stor01.pads.ci.uchicago.edu:/gpfs/pads/projects/CI-CCR000013/jonmon/Swift/tests/cat_test/data.txt">;
>> 
>> 
>> This does not seem to work in release 0.92.1 as the error below
>> shows.  How do you map data in Swift using the GSIURI scheme?
>> 
>> Begin forwarded message:
>> 
>>> From: Jonathan Monette <jonmon at utexas.edu>
>>> 
>>> Date: July 11, 2011 2:30:34 PM CDT
>>> 
>>> To: swift-devel Devel <swift-devel at ci.uchicago.edu>
>>> 
>>> Cc: Mihael Hategan Hategan <hategan at mcs.anl.gov>
>>> 
>>> Subject: NumberFormatException
>>> 
>>> 
>>> Mihael,
>>>  I am getting this error using release 0.92.1.
>>> 
>>> 2011-07-11 19:24:44,395+0000 INFO  unknown RUNID
>>> id=run:20110711-1924-c944yl9c
>>> 2011-07-11 19:24:44,508+0000 DEBUG VDL2ExecutionContext vdl:new @
>>> script.kml, line: 69: java.lang.RuntimeException:
>>> java.lang.NumberFormatException: For input string: ""
>>> java.lang.RuntimeException: java.lang.NumberFormatException: For
>>> input string: ""
>>> Caused by: java.lang.RuntimeException:
>>> java.lang.NumberFormatException: For input string: ""
>>> at org.griphyn.vdl.mapping.AbsFile.exists(AbsFile.java:109)
>>> at
>>> org.griphyn.vdl.mapping.file.SingleFileMapper.existing(SingleFileMapper.java:24)
>>> at
>>> org.griphyn.vdl.mapping.RootDataNode.checkInputs(RootDataNode.java:97)
>>> at
>>> org.griphyn.vdl.mapping.RootDataNode.checkInputs(RootDataNode.java:75)
>>> at
>>> org.griphyn.vdl.mapping.RootDataNode.innerInit(RootDataNode.java:61)
>>> at org.griphyn.vdl.mapping.RootDataNode.init(RootDataNode.java:37)
>>> at org.griphyn.vdl.karajan.lib.New.function(New.java:126)
>>> at org.griphyn.vdl.karajan.lib.VDLFunction.post(VDLFunction.java:68)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted(AbstractSequentialWithArguments.java:192)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java:32)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:340)
>>> at
>>> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:173)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:181)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:309)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted(AbstractSequentialWithArguments.java:192)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.user.UserDefinedElement.childCompleted(UserDefinedElement.java:290)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.user.SequentialImplicitExecutionUDE.childCompleted(SequentialImplicitExecutionUDE.java:85)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java:32)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:340)
>>> at
>>> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:173)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:181)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:309)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.functions.Argument.post(Argument.java:45)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted(AbstractSequentialWithArguments.java:192)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java:32)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:340)
>>> at
>>> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:173)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:181)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:309)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.functions.Map_Map.post(Map_Map.java:55)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.Sequential.startNext(Sequential.java:50)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.Sequential.childCompleted(Sequential.java:44)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java:32)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:340)
>>> at
>>> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:173)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:181)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:309)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58)
>>> at org.globus.cog.karajan.workflow.nodes.Each.post(Each.java:31)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted(AbstractSequentialWithArguments.java:192)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java:32)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:340)
>>> at
>>> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:173)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:181)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:309)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.functions.AbstractFunction.post(AbstractFunction.java:28)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.Sequential.startNext(Sequential.java:50)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.Sequential.executeChildren(Sequential.java:26)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowContainer.execute(FlowContainer.java:63)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.restart(FlowNode.java:238)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.start(FlowNode.java:289)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.controlEvent(FlowNode.java:402)
>>> at
>>> org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:343)
>>> at
>>> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:173)
>>> at
>>> org.globus.cog.karajan.workflow.events.EventTargetPair.run(EventTargetPair.java:44)
>>> at edu.emory.mathcs.backport.java.util.concurrent.Executors
>>> $RunnableAdapter.call(Executors.java:431)
>>> at
>>> edu.emory.mathcs.backport.java.util.concurrent.FutureTask.run(FutureTask.java:166)
>>> at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor
>>> $Worker.runTask(ThreadPoolExecutor.java:643)
>>> at edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor
>>> $Worker.run(ThreadPoolExecutor.java:668)
>>> at java.lang.Thread.run(Thread.java:636)
>>> Caused by: java.lang.NumberFormatException: For input string: ""
>>> at
>>> java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
>>> at java.lang.Integer.parseInt(Integer.java:493)
>>> at java.lang.Integer.parseInt(Integer.java:514)
>>> at
>>> org.globus.cog.abstraction.impl.common.task.ServiceContactImpl.parse(ServiceContactImpl.java:90)
>>> at
>>> org.globus.cog.abstraction.impl.common.task.ServiceContactImpl.<init>(ServiceContactImpl.java:27)
>>> at org.griphyn.vdl.mapping.AbsFile.getFileResource(AbsFile.java:84)
>>> at org.griphyn.vdl.mapping.AbsFile.exists(AbsFile.java:99)
>>> ... 63 more
>>> 
>>> The files needed for this run are located in ~jonmon/run.0000 on the
>>> ci machines.
>> 
>> 
> 
> 
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