[Swift-devel] Swift 0.92(.1) on Fusion

[David Kelly]

Hello,

Recently when I try to run Swift on Fusion, my job never seems to
execute. I have emailed Fusion support about this (ticket #70175) but
thought it may also be useful to send to the list. I am trying to run
the catsn.swift script for testing. I can see it in qstat. The
sites.xml is based on the config listed in the Fusion cookbook, with a
few small changes. I added an internalHostname entry and set it to the
IP address attached to the Infiniband device. I also lowered the
maxtime from 1000 to 10. The Fusion cookbook says "Set MAXTIME as in
qsub walltime. This is on a per-allocation basis and should be at
least 20% larger than your longest task". I am not sure how maxtime
relates to walltime exactly, but the walltime value in the PBS file
gets set to 00:00:00. I am not sure if this matters or not.

I have also attached a compressed log file and the actual swift script
I'm trying to run.

Thanks,
David

$ swift -version
Swift svn swift-r4076 cog-r3049

qstat:
541724.fmgt2.l davidk   shared   Block-0412    --    1    1    --  00:00 Q   --

sites.xml:
<config>
<pool handle="fusion">
  <execution jobmanager="local:pbs" provider="coaster" url="none"/>
  <filesystem provider="local" url="none" />
  <profile namespace="globus" key="internalHostname">192.168.71.81</profile>
  <profile namespace="globus" key="maxtime">10</profile>
  <profile namespace="globus" key="workersPerNode">1</profile>
  <profile namespace="globus" key="slots">1</profile>
  <profile namespace="globus" key="nodeGranularity">1</profile>
  <profile namespace="globus" key="maxNodes">2</profile>
  <profile namespace="globus" key="queue">shared</profile>
  <profile namespace="karajan" key="jobThrottle">5.99</profile>
  <profile namespace="karajan" key="initialScore">10000</profile>
  <workdirectory>/home/davidk/swiftwork</workdirectory>
</pool>
</config>

PBS submission file:
#PBS -S /bin/bash
#PBS -N Block-0412-211041-000000
#PBS -m n
#PBS -l nodes=1
#PBS -l walltime=00:00:00
#PBS -q shared
#PBS -o /homes/davidk/.globus/scripts/PBS1298937999826083605.submit.stdout
#PBS -e /homes/davidk/.globus/scripts/PBS1298937999826083605.submit.stderr
WORKER_LOGGING_LEVEL=NONE
#PBS -v WORKER_LOGGING_LEVEL
cd / && /usr/bin/perl
/homes/davidk/.globus/coasters/cscript1716491648595514240.pl
http://192.168.71.81:46584 0412-211041-000000 NOLOGGING
/bin/echo $? >/homes/davidk/.globus/scripts/PBS1298937999826083605.submit.exitcode
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