[Swift-devel] Re: can't run ssh:pbs coaster again
Michael Wilde
wilde at mcs.anl.gov
Fri Mar 12 19:35:01 CST 2010
Wenjun, I just started looking into this problem.
Can you tell me:
- what directory was swift run from, and where is the swift .log file for this run?
- what swift was run?
- what machine was it run from?
- did this configuration, with ssh:pbs work for you in the past?
- did you create a valid proxy before running? Did your proxy perhaps expire? (If so there should be a message to that effect in the log).
- did you save all of Swift's stdout/stderr messages form this run, and if so where?
Thanks,
Mike
----- "Wenjun Wu" <wwj at ci.uchicago.edu> wrote:
> Hi Mike,
> I posted tc.data, sites.xml and coasters.log here.
>
> Wenjun
>
> coasterpads LoopModel
> /autonfs/gpfs-pads/oops/scienceportal/oops-svn/protlib2/bin/LoopModel.sh
>
> null null GLOBUS::maxwalltime="02:00:00"
> localhost PrepLoop
> /autonfs/gpfs-pads/oops/scienceportal/oops-svn/protlib2/bin/preploop.sh
>
> null null null
> localhost PostProcessLoops
> /autonfs/gpfs-pads/oops/scienceportal/oops-svn/protlib2/bin/PostProcessLoops.sh
>
> null null null
>
> <pool handle="coasterpads">
> <execution provider="coaster" url="login.pads.ci.uchicago.edu"
> jobmanager="ssh:pbs"/>
>
> <profile namespace="globus" key="workersPerNode">2</profile>
> <profile namespace="globus" key="slots">1</profile>
> <profile namespace="globus" key="nodeGranularity">1</profile>
> <profile namespace="globus" key="maxNodes">10</profile>
> <profile namespace="karajan" key="jobThrottle">0.5</profile>
> <profile namespace="karajan" key="initialScore">10000</profile>
>
> <filesystem provider="ssh" url="login.pads.ci.uchicago.edu"/>
> <workdirectory>/gpfs/pads/oops/workflows</workdirectory>
> </pool>
>
> 2010-03-11 11:02:50,617 1195158935 Processing file list
> 2010-03-11 11:02:50,646 1195158935 Updating jars
> 2010-03-11 11:02:50,869 1195158935 Forking service
> 2010-03-11 11:02:50,869 1195158935 Moved coaster jar to head of
> classpath
> 2010-03-11 11:02:50,870 1195158935 Args: [nice, -n, 2,
> /home/wwj/Desktop/jdk1.5.0_07/bin/java, -Xmx256M,
> -DGLOBUS_HOSTNAME=login.pads.ci.uchicago.edu,
> -Djava.security.egd=file:///dev/urandom, -cp,
> /home/wwj/.globus/coasters/cache/cog-provider-coaster-0.3-ad4cd4f04d7ce5e14eb3cb2fe39b9d60.jar:/home/wwj/.globus/coasters/cache/backport-util
>
> > Wenjun, its possible that your sites.xml is specifying parameters
> that are not grantable by the cluster. Eg, a queue that doesnt exist,
> more nodes than exist, more time than is valid for a queue, etc.
> >
> > Please post your sites.xml and tc files - thats the first place to
> look for these problems.
> >
> > The cause may be visible in logs from PBS under
> $HOME/.globus/{coasters,...}
> >
> > - Mike
> >
> > ----- "Wenjun Wu" <wwj at ci.uchicago.edu> wrote:
> >
> >
> >> Hi Mike,
> >> I encountered a problem with running coaster on pad again.
> >> From the attached log file, the error message says:
> >> "Caused by: Could not submit job
> >> Caused by:
> >>
> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:
> >> Could not submit job
> >> Caused by:
> >>
> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:
> >> Could not start coaster service
> >> Caused by:
> >>
> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:
> >> Task ended before registration was received. "
> >>
> >> Is there any way to figure what might cause this?
> >> Thanks,
> >>
> >> Wenjun
> >>
> >>> Hi Mike,
> >>> Right now I can run the loop model using ssh:pbs through
> coaster.
> >>>
> >> But
> >>
> >>> it can only run one job on one node at one moment.
> >>> Whenever I increase the values for workersPerNode, maxNodes and
> >>> jobThrottle so that the workflow can run on multiple nodes through
>
> >>> coaster,
> >>> it run into a problem. Please take a look at the error message.
> >>>
> >>> Thanks,
> >>>
> >>> Wenjun
> >>>
> >>> Begin PBS Epilogue Mon Mar 1 15:51:56 CST 2010
> >>> Job ID: 5754.svc.pads.ci.uchicago.edu
> >>> Username: wwj
> >>> Group: ci-users
> >>> Job Name: null
> >>> Session: 32252
> >>> Limits: nodes=5,walltime=04:00:00
> >>> Resources:
> cput=00:00:00,mem=708kb,vmem=8400kb,walltime=00:00:02
> >>> Nodes:
> >>>
> >>>
> >>
> c48.pads.ci.uchicago.edu,c46.pads.ci.uchicago.edu,c45.pads.ci.uchicago.edu,c06.pads.ci.uchicago.edu,c07.pads.ci.uchicago.edu
> >>
> >>
> >>> End PBS Epilogue Mon Mar 1 15:51:56 CST 2010
> >>> ----------------------------------------
> >>>
> >>>
> >>>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.karajan.workflow.events.FailureNotificationEvent.<init>(FailureNotificationEvent.java:36)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.karajan.workflow.events.FailureNotificationEvent.<init>(FailureNotificationEvent.java:42)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.karajan.workflow.nodes.FlowNode.failImmediately(FlowNode.java:147)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.karajan.workflow.nodes.grid.GridExec.taskFailed(GridExec.java:320)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.karajan.workflow.nodes.grid.AbstractGridNode.statusChanged(AbstractGridNode.java:276)
> >>
> >>
> >>> at
> >>>
> >>
> org.griphyn.vdl.karajan.lib.Execute.statusChanged(Execute.java:104)
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.karajan.scheduler.AbstractScheduler.fireJobStatusChangeEvent(AbstractScheduler.java:168)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.karajan.scheduler.LateBindingScheduler.statusChanged(LateBindingScheduler.java:661)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.karajan.scheduler.WeightedHostScoreScheduler.statusChanged(WeightedHostScoreScheduler.java:424)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.griphyn.vdl.karajan.VDSAdaptiveScheduler.statusChanged(VDSAdaptiveScheduler.java:410)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.abstraction.impl.common.task.TaskImpl.notifyListeners(TaskImpl.java:236)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.abstraction.impl.common.task.TaskImpl.setStatus(TaskImpl.java:224)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.abstraction.impl.execution.coaster.NotificationManager.setStatus(NotificationManager.java:112)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.abstraction.impl.execution.coaster.NotificationManager.notificationReceived(NotificationManager.java:78)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.abstraction.coaster.service.local.JobStatusHandler.requestComplete(JobStatusHandler.java:45)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.karajan.workflow.service.handlers.RequestHandler.receiveCompleted(RequestHandler.java:84)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.karajan.workflow.service.channels.AbstractKarajanChannel.handleRequest(AbstractKarajanChannel.java:348)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.karajan.workflow.service.channels.AbstractStreamKarajanChannel.step(AbstractStreamKarajanChannel.java:156)
> >>
> >>
> >>> at
> >>>
> >>>
> >>
> org.globus.cog.karajan.workflow.service.channels.AbstractStreamKarajanChannel$Multiplexer.run(AbstractStreamKarajanChannel.java:365)
> >>
> >>
> >>> 2010-03-01 15:52:00,639-0600 INFO ExecutionContext Detailed
> >>>
> >> exception:
> >>
> >>> Exception in LoopModel:
> >>> Arguments: [output/data//T0510D1.pdb, output/run/T0510D1.14.pdb]
> >>> Host: coasterpads
> >>> Directory:
> >>>
> >> psim.loops-20100301-1551-7qejrfd0/jobs/8/LoopModel-89hxehoj
> >>
> >>> stderr.txt:
> >>>
> >>> stdout.txt:
> >>>
> >>> ----
> >>>
> >>> Caused by: Task failed: 0301-510351-000000 Block task ended
> >>>
> >> prematurely
> >>
> >>>> Wenjun, I'll be at Argonne in about an hour - lets try to debug
> >>>>
> >> this
> >>
> >>>> together.
> >>>>
> >>>> Lets do it step by step: first lets test that we can submit ssh
> >>>>
> >> jobs
> >>
> >>>> from communicado to pads; then do coasters on top of that
> >>>> (provider=ssh:pbs) unless you suggest differently, Mihael.
> >>>>
> >>>> (The other possibility is ssh from communicado to run *swift* on
>
> >>>> pads. Given that the share /home and /gpfs/pads, this might be a
> >>>>
> >> good
> >>
> >>>> easy option?)
> >>>>
> >>>> - Mike
> >>>>
> >>>> ----- "Wenjun Wu" <wwj at ci.uchicago.edu> wrote:
> >>>>
> >>>>
> >>>>
> >>>>> Hi Mihael,
> >>>>> Please find the attached log file and sites.xml.
> >>>>> I run the swift script from sidgrid to pads. And ssh "which
> >>>>>
> >> qsub"
> >>
> >>>>> returns the right path.
> >>>>> But the coaster didn't work for me.
> >>>>>
> >>>>> Thanks!
> >>>>>
> >>>>> Wenjun
> >>>>>
> >>>>>
> >>>>>> I think what's happening in Wenjun's case is that qsub is not
> in
> >>>>>>
> >>>>>>
> >>>>> the
> >>>>>
> >>>>>
> >>>>>> path. I suppose this could be tested by running a simple ssh
> job
> >>>>>>
> >>>>>>
> >>>>> that
> >>>>>
> >>>>>
> >>>>>> does "which qsub".
> >>>>>>
> >>>>>> On Thu, 2010-02-25 at 16:08 -0600, Michael Wilde wrote:
> >>>>>>
> >>>>>>
> >>>>>>> Was: Re: [PADS Support #3457] globus services for accessing
> >>>>>>>
> >> PADS
> >>
> >>>>>>> --
> >>>>>>>
> >>>>>>> Hi Wenjun,
> >>>>>>>
> >>>>>>> Are you doing this from communicado? If so, you need to use
> ssh
> >>>>>>>
> >> to
> >>
> >>>>>>>
> >>>>>>>
> >>>>> get
> >>>>>
> >>>>>
> >>>>>>> from communicado to PADS. And since when you get there you
> want
> >>>>>>>
> >> to
> >>
> >>>>>>>
> >>>>>>>
> >>>>> run
> >>>>>
> >>>>>
> >>>>>>> coasters. you need I think to use the coaster provider and
> >>>>>>>
> >>>>>>>
> >>>>> jobmanager
> >>>>>
> >>>>>
> >>>>>>> = ssh:pbs.
> >>>>>>>
> >>>>>>> I'm cc'ing swift-user and Mihael to discuss the exact sites
> >>>>>>>
> >>>>>>>
> >>>>> options
> >>>>>
> >>>>>
> >>>>>>> needed.
> >>>>>>>
> >>>>>>> We'd want coasters to use ssh to launch one PBS job to launch
> >>>>>>>
> >> all
> >>
> >>>>>>>
> >>>>>>>
> >>>>> the
> >>>>>
> >>>>>
> >>>>>>> workers.
> >>>>>>> I think there are still some issues on PADS with interpreting
> >>>>>>>
> >>>>>>>
> >>>>> #nodes
> >>>>>
> >>>>>
> >>>>>>> and workerspernode correctly, so please bear with us while we
> >>>>>>>
> >>>>>>>
> >>>>> figure
> >>>>>
> >>>>>
> >>>>>>> this out.
> >>>>>>>
> >>>>>>> I'll try this myself later tonight, but if you discover
> >>>>>>>
> >> anything
> >>
> >>>>>>> (either working of failing) please post to the User list.
> >>>>>>>
> >>>>>>> Thanks,
> >>>>>>>
> >>>>>>> Mike
> >>>>>>>
> >>>>>>>
> >>>>>>> ----- "Wenjun Wu" <wwj at ci.uchicago.edu> wrote:
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>> Hi Mike,
> >>>>>>>> I tried to run loop model through ssh+pbs on PADS. The ssh
> >>>>>>>>
> >>>>>>>>
> >>>>> provider
> >>>>>
> >>>>>
> >>>>>>>> seems working but pbs not.
> >>>>>>>> Please check the site file and error message in the below:
> >>>>>>>>
> >>>>>>>> Wenjun
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>> Wenjun,
> >>>>>>>>>
> >>>>>>>>> I think having GRAM (GRAM5 especially) on PADS would be
> >>>>>>>>>
> >> useful.
> >>
> >>>>>>>>> But in the meantime, I think you can also use swift's ssh
> >>>>>>>>>
> >>>>>>>>>
> >>>>> provider
> >>>>>
> >>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>> to get to PADS.
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>> We'll need to try that.
> >>>>>>>>>
> >>>>>>>>> - Mike
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>> <pool handle="pads">
> >>>>>>>> <!-- gridftp url="gsiftp://stor.ci.uchicago.edu"/ -->
> >>>>>>>> <filesystem url="login.pads.ci.uchicago.edu"
> >>>>>>>>
> >> provider="ssh"
> >>
> >>>>>>>>
> >>>>>>>>
> >>>>> />
> >>>>>
> >>>>>
> >>>>>>>> <execution provider="pbs" url="svc.pads.ci.uchicago.edu"
> >>>>>>>>
> >> />
> >>
> >>>>>>>> <workdirectory>/gpfs/pads/oops/workflows</workdirectory>
> >>>>>>>> <profile namespace="karajan"
> >>>>>>>>
> >> key="jobThrottle">0.03</profile>
> >>
> >>>>>>>> <profile namespace="karajan"
> >>>>>>>>
> >>>>>>>>
> >>>>> key="initialScore">10000</profile>
> >>>>>
> >>>>>
> >>>>>>>> </pool>
> >>>>>>>>
> >>>>>>>> Caused by: qstat failed (exit code 255)
> >>>>>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.karajan.workflow.events.FailureNotificationEvent.<init>(FailureNotificationEvent.java:36)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.karajan.workflow.events.FailureNotificationEvent.<init>(FailureNotificationEvent.java:42)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.karajan.workflow.nodes.FlowNode.failImmediately(FlowNode.java:147)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.karajan.workflow.nodes.grid.GridExec.taskFailed(GridExec.java:320)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.karajan.workflow.nodes.grid.AbstractGridNode.statusChanged(AbstractGridNode.java:276)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.griphyn.vdl.karajan.lib.Execute.statusChanged(Execute.java:104)
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.karajan.scheduler.AbstractScheduler.fireJobStatusChangeEvent(AbstractScheduler.java:168)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.karajan.scheduler.LateBindingScheduler.statusChanged(LateBindingScheduler.java:661)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.karajan.scheduler.WeightedHostScoreScheduler.statusChanged(WeightedHostScoreScheduler.java:424)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.griphyn.vdl.karajan.VDSAdaptiveScheduler.statusChanged(VDSAdaptiveScheduler.java:410)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.abstraction.impl.common.task.TaskImpl.notifyListeners(TaskImpl.java:236)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.abstraction.impl.common.task.TaskImpl.setStatus(TaskImpl.java:224)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.abstraction.impl.common.AbstractDelegatedTaskHandler.failTask(AbstractDelegatedTaskHandler.java:54)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.processFailed(AbstractJobSubmissionTaskHandler.java:101)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.processFailed(AbstractExecutor.java:246)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.abstraction.impl.scheduler.common.Job.fail(Job.java:198)
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.abstraction.impl.scheduler.common.AbstractQueuePoller.failAll(AbstractQueuePoller.java:141)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.abstraction.impl.scheduler.common.AbstractQueuePoller.pollQueue(AbstractQueuePoller.java:172)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> at
> >>>>>>>>
> >>>>>>>>
> >>
> org.globus.cog.abstraction.impl.scheduler.common.AbstractQueuePoller.run(AbstractQueuePoller.java:80)
> >>
> >>
> >>>>>
> >>>>>
> >>>>>>>> ... 1 more
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>> ----- "Ti Leggett" <pads-support at ci.uchicago.edu> wrote:
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>> There are currently no Globus job managers, but GridFTP is
> >>>>>>>>>>
> >> at
> >>
> >>>>>>>>>> stor.ci.uchicago.edu.
> >>>>>>>>>>
> >>>>>>>>>> I'll work on getting GRAM up. Do you need WSRF or Pre-WS
> >>>>>>>>>>
> >> GRAM?
> >>
> >>>>>>>>>> On Wed Feb 24 14:45:57 2010, wwj at ci.uchicago.edu wrote:
> >>>>>>>>>>
> >>>>>>>>>>
> >>>>>>>>>>> Hello,
> >>>>>>>>>>> Could you please tell me whether there is any globus
> >>>>>>>>>>>
> >>>>>>>>>>>
> >>>>> services
> >>>>>
> >>>>>
> >>>>>>>>>>>
> >>>>>>>>>>>
> >>>>>>>> for
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>>> PADS such as GridFTP and GRAM?
> >>>>>>>>>>> I'm trying to launch jobs to PADS remotely but can't
> >>>>>>>>>>>
> >> figure
> >>
> >>>>>>>>>>>
> >>>>>>>>>>>
> >>>>>>>> out
> >>>>>>>>
> >>>>>>>>
> >>>>>>>>>>>
> >>>>>>>>>>>
> >>>>>>>>>> what
> >>>>>>>>>>
> >>>>>>>>>>> are the right URLs for the GridFTP
> >>>>>>>>>>> service and GRAM.
> >>>>>>>>>>> Thanks!
> >>>>>>>>>>>
> >>>>>>>>>>> Wenjun
> >>>>>>>>>>>
> >>>>>>>>>>>
> >>>>>>>>>
> >>>>>>>>>
> >>>>>>
> >>>>>>
> >>>>> 2010-02-25 17:12:00,157-0600 DEBUG Loader Max heap: 266403840
> >>>>> 2010-02-25 17:12:00,159-0600 DEBUG Loader kmlversion is
> >>>>>
> >>>>>
> >>>>>> cd1f7f6b-6e05-4723-ac70-e8683b56ae98<
> >>>>>>
> >>>>>>
> >>>>> 2010-02-25 17:12:00,159-0600 DEBUG Loader build version is
> >>>>>
> >>>>>
> >>>>>> f3073b05-a317-4f56-a26f-f87b6abd1af3<
> >>>>>>
> >>>>>>
> >>>>> 2010-02-25 17:12:00,159-0600 INFO Loader psim.loops.swift:
> >>>>>
> >> source
> >>
> >>>>> file was compiled with a different version of Swift.
> Recompiling.
> >>>>> 2010-02-25 17:12:01,274-0600 INFO Karajan Validation of XML
> >>>>> intermediate file was successful
> >>>>> 2010-02-25 17:12:01,982-0600 INFO VDL2ExecutionContext Stack
> >>>>>
> >> dump:
> >>
> >>>>> Level 1
> >>>>> [iA = 0, iB = 0, bA = false, bB = false]
> >>>>> vdl:instanceconfig = Swift configuration []
> >>>>> vdl:operation = run
> >>>>> swift.home =
> >>>>> /home/wwj/SIDGrid/swift/cog-branch/modules/swift/dist/swift-svn
> >>>>> PATH_SEPARATOR = /
> >>>>>
> >>>>>
> >>>>> 2010-02-25 17:12:02,907-0600 INFO unknown Using sites file:
> >>>>> ./sites.xml
> >>>>> 2010-02-25 17:12:02,908-0600 INFO unknown Using tc.data:
> >>>>>
> >> ./tc.data
> >>
> >>>>> 2010-02-25 17:12:03,089-0600 INFO AbstractScheduler Setting
> >>>>>
> >> resources
> >>
> >>>>> to: {pads=pads, localhost=localhost, pbs=pbs,
> >>>>> pbs-coaster=pbs-coaster}
> >>>>> 2010-02-25 17:12:03,711-0600 INFO unknown Swift svn
> swift-r3246
> >>>>> cog-r2721
> >>>>>
> >>>>> 2010-02-25 17:12:03,713-0600 INFO unknown RUNID
> >>>>>
> id=tag:benc at ci.uchicago.edu,2007:swift:run:20100225-1712-3zrtb5i5
> >>>>> 2010-02-25 17:12:03,916-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000001
> >>
> >>
> >>>>> type string value=input dataset=unnamed SwiftScript value
> >>>>>
> >> (closed)
> >>
> >>>>> 2010-02-25 17:12:03,925-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000001
> >>
> >>
> >>>>> 2010-02-25 17:12:03,925-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000002
> >>
> >>
> >>>>> type string value=LoopModelResults.map dataset=unnamed
> >>>>>
> >> SwiftScript
> >>
> >>>>> value (closed)
> >>>>> 2010-02-25 17:12:03,925-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000002
> >>
> >>
> >>>>> 2010-02-25 17:12:03,925-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000003
> >>
> >>
> >>>>> type string value=indir dataset=unnamed SwiftScript value
> >>>>>
> >> (closed)
> >>
> >>>>> 2010-02-25 17:12:03,926-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000003
> >>
> >>
> >>>>> 2010-02-25 17:12:03,926-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000004
> >>
> >>
> >>>>> type string value=output dataset=unnamed SwiftScript value
> >>>>>
> >> (closed)
> >>
> >>>>> 2010-02-25 17:12:03,926-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000004
> >>
> >>
> >>>>> 2010-02-25 17:12:03,926-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000005
> >>
> >>
> >>>>> type string value=outdir dataset=unnamed SwiftScript value
> >>>>>
> >> (closed)
> >>
> >>>>> 2010-02-25 17:12:03,926-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000005
> >>
> >>
> >>>>> 2010-02-25 17:12:03,926-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000006
> >>
> >>
> >>>>> type string value=protein dataset=unnamed SwiftScript value
> >>>>>
> >> (closed)
> >>
> >>>>> 2010-02-25 17:12:03,927-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000006
> >>
> >>
> >>>>> 2010-02-25 17:12:03,927-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000007
> >>
> >>
> >>>>> type string value=LoopModelData.map dataset=unnamed SwiftScript
> >>>>>
> >> value
> >>
> >>>>> (closed)
> >>>>> 2010-02-25 17:12:03,927-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000007
> >>
> >>
> >>>>> 2010-02-25 17:12:03,927-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000008
> >>
> >>
> >>>>> type string value=4 dataset=unnamed SwiftScript value (closed)
> >>>>> 2010-02-25 17:12:03,927-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000008
> >>
> >>
> >>>>> 2010-02-25 17:12:03,928-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000009
> >>
> >>
> >>>>> type string value=LoopModelOutArray.map dataset=unnamed
> >>>>>
> >> SwiftScript
> >>
> >>>>> value (closed)
> >>>>> 2010-02-25 17:12:03,928-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000009
> >>
> >>
> >>>>> 2010-02-25 17:12:03,928-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000010
> >>
> >>
> >>>>> type string value=LoopModelIn.map dataset=unnamed SwiftScript
> >>>>>
> >> value
> >>
> >>>>> (closed)
> >>>>> 2010-02-25 17:12:03,928-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000010
> >>
> >>
> >>>>> 2010-02-25 17:12:03,928-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000011
> >>
> >>
> >>>>> type string value=nSim dataset=unnamed SwiftScript value
> (closed)
> >>>>> 2010-02-25 17:12:03,928-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000011
> >>
> >>
> >>>>> 2010-02-25 17:12:03,932-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000012
> >>
> >>
> >>>>> type int value=1.0 dataset=unnamed SwiftScript value (closed)
> >>>>> 2010-02-25 17:12:03,932-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000012
> >>
> >>
> >>>>> 2010-02-25 17:12:03,933-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000013
> >>
> >>
> >>>>> type int value=0.0 dataset=unnamed SwiftScript value (closed)
> >>>>> 2010-02-25 17:12:03,933-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000013
> >>
> >>
> >>>>> 2010-02-25 17:12:03,946-0600 INFO modelloops STARTCOMPOUND
> >>>>>
> >> thread=0-1
> >>
> >>>>> name=ModelLoops
> >>>>> 2010-02-25 17:12:03,973-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000014
> >>
> >>
> >>>>> 2010-02-25 17:12:03,976-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000015
> >>
> >>
> >>>>> 2010-02-25 17:12:03,978-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000016
> >>
> >>
> >>>>> 2010-02-25 17:12:03,979-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000017
> >>
> >>
> >>>>> 2010-02-25 17:12:03,985-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000018
> >>
> >>
> >>>>> 2010-02-25 17:12:03,987-0600 INFO AbstractDataNode Adding
> handle
> >>>>> listener "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000019
> >>
> >>
> >>>>> type LoopModelIn with no value at dataset=modelIn (not closed)"
> >>>>>
> >> to
> >>
> >>>>> "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000018
> >>
> >>
> >>>>> type string with no value at dataset=swift#mapper#17007 (not
> >>>>>
> >> closed)"
> >>
> >>>>> 2010-02-25 17:12:03,987-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000019
> >>
> >>
> >>>>> 2010-02-25 17:12:03,989-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000020
> >>
> >>
> >>>>> 2010-02-25 17:12:03,991-0600 INFO AbstractDataNode Adding
> handle
> >>>>> listener "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000021
> >>
> >>
> >>>>> type LoopModelData with no value at dataset=modelData (not
> >>>>>
> >> closed)" to
> >>
> >>>>> "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000020
> >>
> >>
> >>>>> type string with no value at dataset=swift#mapper#17009 (not
> >>>>>
> >> closed)"
> >>
> >>>>> 2010-02-25 17:12:03,991-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000021
> >>
> >>
> >>>>> 2010-02-25 17:12:03,993-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000022
> >>
> >>
> >>>>> 2010-02-25 17:12:03,997-0600 INFO AbstractDataNode Adding
> handle
> >>>>> listener "modelOut.$[]/0" to
> >>>>>
> >> "org.griphyn.vdl.mapping.RootDataNode
> >>
> >>>>> identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000022
> >>
> >>
> >>>>> type string with no value at dataset=swift#mapper#17011 (not
> >>>>>
> >> closed)"
> >>
> >>>>> 2010-02-25 17:12:03,997-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000023
> >>
> >>
> >>>>> 2010-02-25 17:12:03,999-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000024
> >>
> >>
> >>>>> 2010-02-25 17:12:04,001-0600 INFO AbstractDataNode Adding
> handle
> >>>>> listener "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000025
> >>
> >>
> >>>>> type LoopModelResults with no value at dataset=modelResults
> (not
> >>>>> closed)" to "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000024
> >>
> >>
> >>>>> type string with no value at dataset=swift#mapper#17013 (not
> >>>>>
> >> closed)"
> >>
> >>>>> 2010-02-25 17:12:04,001-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000025
> >>
> >>
> >>>>> 2010-02-25 17:12:04,007-0600 INFO SetFieldValue Setting
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000018
> >>
> >>
> >>>>> type string with no value at dataset=swift#mapper#17007 (not
> >>>>>
> >> closed)
> >>
> >>>>> to LoopModelIn.map
> >>>>> 2010-02-25 17:12:04,007-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000026
> >>
> >>
> >>>>> type string value=4 dataset=unnamed SwiftScript value (closed)
> >>>>> 2010-02-25 17:12:04,007-0600 INFO VDLFunction FUNCTION
> id=451000
> >>>>> name=arg
> >>>>>
> >>>>>
> >>
> result=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000026
> >>
> >>
> >>>>> 2010-02-25 17:12:04,007-0600 INFO VDLFunction
> FUNCTIONPARAMETER
> >>>>> id=451000
> >>>>>
> >>>>>
> >>
> input=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000011
> >>
> >>
> >>>>> name=name
> >>>>> 2010-02-25 17:12:04,007-0600 INFO VDLFunction
> FUNCTIONPARAMETER
> >>>>> id=451000
> >>>>>
> >>>>>
> >>
> input=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000008
> >>
> >>
> >>>>> name=value
> >>>>> 2010-02-25 17:12:04,008-0600 INFO SetFieldValue Setting
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000020
> >>
> >>
> >>>>> type string with no value at dataset=swift#mapper#17009 (not
> >>>>>
> >> closed)
> >>
> >>>>> to LoopModelData.map
> >>>>> 2010-02-25 17:12:04,008-0600 INFO AbstractDataNode Notifying
> >>>>>
> >> listener
> >>
> >>>>> "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000021
> >>
> >>
> >>>>> type LoopModelData with no value at dataset=modelData (not
> >>>>>
> >> closed)"
> >>
> >>>>> about "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000020
> >>
> >>
> >>>>> type string value=LoopModelData.map dataset=swift#mapper#17009
> >>>>> (closed)"
> >>>>> 2010-02-25 17:12:04,008-0600 INFO AbstractDataNode Adding
> handle
> >>>>> listener "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000021
> >>
> >>
> >>>>> type LoopModelData with no value at dataset=modelData (not
> >>>>>
> >> closed)" to
> >>
> >>>>> "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000017
> >>
> >>
> >>>>> type string with no value at dataset=outdir (not closed)"
> >>>>> 2010-02-25 17:12:04,008-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000020
> >>
> >>
> >>>>> type string value=LoopModelData.map dataset=swift#mapper#17009
> >>>>> (closed)
> >>>>> 2010-02-25 17:12:04,008-0600 INFO SetFieldValue Setting
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000022
> >>
> >>
> >>>>> type string with no value at dataset=swift#mapper#17011 (not
> >>>>>
> >> closed)
> >>
> >>>>> to LoopModelOutArray.map
> >>>>> 2010-02-25 17:12:04,009-0600 INFO AbstractDataNode Notifying
> >>>>>
> >> listener
> >>
> >>>>> "modelOut.$[]/0" about "org.griphyn.vdl.mapping.RootDataNode
> >>>>> identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000022
> >>
> >>
> >>>>> type string value=LoopModelOutArray.map
> >>>>>
> >> dataset=swift#mapper#17011
> >>
> >>>>> (closed)"
> >>>>> 2010-02-25 17:12:04,009-0600 INFO AbstractDataNode Adding
> handle
> >>>>> listener "modelOut.$[]/0" to
> >>>>>
> >> "org.griphyn.vdl.mapping.RootDataNode
> >>
> >>>>> identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000014
> >>
> >>
> >>>>> type int with no value at dataset=nSim (not closed)"
> >>>>> 2010-02-25 17:12:04,009-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000022
> >>
> >>
> >>>>> type string value=LoopModelOutArray.map
> >>>>>
> >> dataset=swift#mapper#17011
> >>
> >>>>> (closed)
> >>>>> 2010-02-25 17:12:04,009-0600 INFO SetFieldValue Setting
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000024
> >>
> >>
> >>>>> type string with no value at dataset=swift#mapper#17013 (not
> >>>>>
> >> closed)
> >>
> >>>>> to LoopModelResults.map
> >>>>> 2010-02-25 17:12:04,009-0600 INFO AbstractDataNode Notifying
> >>>>>
> >> listener
> >>
> >>>>> "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000025
> >>
> >>
> >>>>> type LoopModelResults with no value at dataset=modelResults
> (not
> >>>>> closed)" about "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000024
> >>
> >>
> >>>>> type string value=LoopModelResults.map
> dataset=swift#mapper#17013
> >>>>> (closed)"
> >>>>> 2010-02-25 17:12:04,009-0600 INFO AbstractDataNode Adding
> handle
> >>>>> listener "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000025
> >>
> >>
> >>>>> type LoopModelResults with no value at dataset=modelResults
> (not
> >>>>> closed)" to "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000017
> >>
> >>
> >>>>> type string with no value at dataset=outdir (not closed)"
> >>>>> 2010-02-25 17:12:04,009-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000024
> >>
> >>
> >>>>> type string value=LoopModelResults.map
> dataset=swift#mapper#17013
> >>>>> (closed)
> >>>>> 2010-02-25 17:12:04,009-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000027
> >>
> >>
> >>>>> type string value=T0510D1 dataset=unnamed SwiftScript value
> >>>>>
> >> (closed)
> >>
> >>>>> 2010-02-25 17:12:04,009-0600 INFO VDLFunction FUNCTION
> id=451001
> >>>>> name=arg
> >>>>>
> >>>>>
> >>
> result=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000027
> >>
> >>
> >>>>> 2010-02-25 17:12:04,010-0600 INFO VDLFunction
> FUNCTIONPARAMETER
> >>>>> id=451001
> >>>>>
> >>>>>
> >>
> input=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000006
> >>
> >>
> >>>>> name=name
> >>>>> 2010-02-25 17:12:04,010-0600 INFO SetFieldValue Setting
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000015
> >>
> >>
> >>>>> type string with no value at dataset=proteinId (not closed) to
> >>>>> T0510D1
> >>>>> 2010-02-25 17:12:04,010-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000015
> >>
> >>
> >>>>> type string value=T0510D1 dataset=proteinId (closed)
> >>>>> 2010-02-25 17:12:04,010-0600 INFO CloseDataset Partially
> closing
> >>>>> T0510D1 for statement 88013
> >>>>> 2010-02-25 17:12:04,011-0600 INFO CloseDataset var is T0510D1
> >>>>> 2010-02-25 17:12:04,011-0600 INFO CloseDataset var hash is
> >>>>>
> >> 28062585
> >>
> >>>>> 2010-02-25 17:12:04,011-0600 INFO CloseDataset variable
> already
> >>>>> closed - skipping partial close processing
> >>>>> 2010-02-25 17:12:04,011-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000028
> >>
> >>
> >>>>> type string value=input dataset=unnamed SwiftScript value
> >>>>>
> >> (closed)
> >>
> >>>>> 2010-02-25 17:12:04,011-0600 INFO VDLFunction FUNCTION
> id=451002
> >>>>> name=arg
> >>>>>
> >>>>>
> >>
> result=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000028
> >>
> >>
> >>>>> 2010-02-25 17:12:04,011-0600 INFO VDLFunction
> FUNCTIONPARAMETER
> >>>>> id=451002
> >>>>>
> >>>>>
> >>
> input=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000003
> >>
> >>
> >>>>> name=name
> >>>>> 2010-02-25 17:12:04,011-0600 INFO VDLFunction
> FUNCTIONPARAMETER
> >>>>> id=451002
> >>>>>
> >>>>>
> >>
> input=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000001
> >>
> >>
> >>>>> name=value
> >>>>> 2010-02-25 17:12:04,011-0600 INFO SetFieldValue Setting
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000016
> >>
> >>
> >>>>> type string with no value at dataset=indir (not closed) to
> input
> >>>>> 2010-02-25 17:12:04,012-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000016
> >>
> >>
> >>>>> type string value=input dataset=indir (closed)
> >>>>> 2010-02-25 17:12:04,012-0600 INFO AbstractDataNode Notifying
> >>>>>
> >> listener
> >>
> >>>>> "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000019
> >>
> >>
> >>>>> type LoopModelIn with no value at dataset=modelIn (not closed)"
> >>>>>
> >> about
> >>
> >>>>> "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000018
> >>
> >>
> >>>>> type string value=LoopModelIn.map dataset=swift#mapper#17007
> >>>>> (closed)"
> >>>>> 2010-02-25 17:12:04,012-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000029
> >>
> >>
> >>>>> type string value=output dataset=unnamed SwiftScript value
> >>>>>
> >> (closed)
> >>
> >>>>> 2010-02-25 17:12:04,012-0600 INFO VDLFunction FUNCTION
> id=451003
> >>>>> name=arg
> >>>>>
> >>>>>
> >>
> result=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000029
> >>
> >>
> >>>>> 2010-02-25 17:12:04,012-0600 INFO VDLFunction
> FUNCTIONPARAMETER
> >>>>> id=451003
> >>>>>
> >>>>>
> >>
> input=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000005
> >>
> >>
> >>>>> name=name
> >>>>> 2010-02-25 17:12:04,012-0600 INFO VDLFunction
> FUNCTIONPARAMETER
> >>>>> id=451003
> >>>>>
> >>>>>
> >>
> input=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000004
> >>
> >>
> >>>>> name=value
> >>>>> 2010-02-25 17:12:04,012-0600 INFO SetFieldValue Setting
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000017
> >>
> >>
> >>>>> type string with no value at dataset=outdir (not closed) to
> >>>>>
> >> output
> >>
> >>>>> 2010-02-25 17:12:04,012-0600 INFO AbstractDataNode Notifying
> >>>>>
> >> listener
> >>
> >>>>> "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000021
> >>
> >>
> >>>>> type LoopModelData with no value at dataset=modelData (not
> >>>>>
> >> closed)"
> >>
> >>>>> about "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000017
> >>
> >>
> >>>>> type string value=output dataset=outdir (closed)"
> >>>>> 2010-02-25 17:12:04,027-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.DataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000030
> >>
> >>
> >>>>> type PDB with no value at dataset=modelIn path=.pdb (closed)
> >>>>> 2010-02-25 17:12:04,030-0600 INFO AbstractDataNode Found data
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000019
> >>
> >>
> >>>>> type LoopModelIn with no value at dataset=modelIn (not
> >>>>>
> >> closed)..pdb
> >>
> >>>>> 2010-02-25 17:12:04,030-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.DataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000031
> >>
> >>
> >>>>> type Text with no value at dataset=modelIn path=.params
> (closed)
> >>>>> 2010-02-25 17:12:04,032-0600 INFO AbstractDataNode Found data
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000019
> >>
> >>
> >>>>> type LoopModelIn with no value at dataset=modelIn (not
> >>>>> closed)..params
> >>>>> 2010-02-25 17:12:04,032-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.DataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000032
> >>
> >>
> >>>>> type LoopRange with no value at dataset=modelIn path=.range
> >>>>>
> >> (closed)
> >>
> >>>>> 2010-02-25 17:12:04,032-0600 INFO AbstractDataNode Found data
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000019
> >>
> >>
> >>>>> type LoopModelIn with no value at dataset=modelIn (not
> >>>>>
> >> closed)..range
> >>
> >>>>> 2010-02-25 17:12:04,033-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000019
> >>
> >>
> >>>>> type LoopModelIn with no value at dataset=modelIn (closed)
> >>>>> 2010-02-25 17:12:04,033-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000018
> >>
> >>
> >>>>> type string value=LoopModelIn.map dataset=swift#mapper#17007
> >>>>>
> >> (closed)
> >>
> >>>>> 2010-02-25 17:12:04,034-0600 INFO CloseDataset Partially
> closing
> >>>>> input for statement 88014
> >>>>> 2010-02-25 17:12:04,035-0600 INFO CloseDataset var is input
> >>>>> 2010-02-25 17:12:04,035-0600 INFO CloseDataset var hash is
> >>>>>
> >> 21684929
> >>
> >>>>> 2010-02-25 17:12:04,035-0600 INFO CloseDataset variable
> already
> >>>>> closed - skipping partial close processing
> >>>>> 2010-02-25 17:12:04,040-0600 INFO loopprepare PROCEDURE
> line=112
> >>>>> thread=0-1-8 name=loopPrepare
> >>>>> 2010-02-25 17:12:04,041-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000021
> >>
> >>
> >>>>> type LoopModelData with no value at dataset=modelData (not
> >>>>> closed)..fasta
> >>>>> 2010-02-25 17:12:04,041-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000021
> >>
> >>
> >>>>> type LoopModelData with no value at dataset=modelData (not
> >>>>> closed)..pdb
> >>>>> 2010-02-25 17:12:04,041-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000021
> >>
> >>
> >>>>> type LoopModelData with no value at dataset=modelData (not
> >>>>> closed)..native
> >>>>> 2010-02-25 17:12:04,041-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000021
> >>
> >>
> >>>>> type LoopModelData with no value at dataset=modelData (not
> >>>>> closed)..index
> >>>>> 2010-02-25 17:12:04,041-0600 INFO strtoi STARTCOMPOUND
> >>>>>
> >> thread=0-1-0
> >>
> >>>>> name=strtoi
> >>>>> 2010-02-25 17:12:04,041-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000021
> >>
> >>
> >>>>> type LoopModelData with no value at dataset=modelData (not
> >>>>> closed)..params
> >>>>> 2010-02-25 17:12:04,041-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000021
> >>
> >>
> >>>>> type LoopModelData with no value at dataset=modelData (not
> >>>>> closed)..range
> >>>>> 2010-02-25 17:12:04,042-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000021
> >>
> >>
> >>>>> type LoopModelData with no value at dataset=modelData (not
> >>>>> closed)..rama
> >>>>> 2010-02-25 17:12:04,042-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000021
> >>
> >>
> >>>>> type LoopModelData with no value at dataset=modelData (not
> >>>>> closed)..map
> >>>>> 2010-02-25 17:12:04,042-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000021
> >>
> >>
> >>>>> type LoopModelData with no value at dataset=modelData (not
> >>>>> closed)..secseq
> >>>>> 2010-02-25 17:12:04,047-0600 INFO AbstractDataNode Notifying
> >>>>>
> >> listener
> >>
> >>>>> "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000025
> >>
> >>
> >>>>> type LoopModelResults with no value at dataset=modelResults
> (not
> >>>>> closed)" about "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000017
> >>
> >>
> >>>>> type string value=output dataset=outdir (closed)"
> >>>>> 2010-02-25 17:12:04,051-0600 INFO loopmodelanalysis PROCEDURE
> >>>>> line=122 thread=0-1-10 name=loopModelAnalysis
> >>>>> 2010-02-25 17:12:04,053-0600 INFO doloopround STARTCOMPOUND
> >>>>> thread=0-1-9 name=doLoopRound
> >>>>> 2010-02-25 17:12:04,058-0600 INFO New NEW
> >>>>>
> >>>>>
> >>
> id=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000042
> >>
> >>
> >>>>> 2010-02-25 17:12:04,058-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000025
> >>
> >>
> >>>>> type LoopModelResults with no value at dataset=modelResults
> (not
> >>>>> closed)..pwPlot
> >>>>> 2010-02-25 17:12:04,058-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000025
> >>
> >>
> >>>>> type LoopModelResults with no value at dataset=modelResults
> (not
> >>>>> closed)..best
> >>>>> 2010-02-25 17:12:04,059-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000025
> >>
> >>
> >>>>> type LoopModelResults with no value at dataset=modelResults
> (not
> >>>>> closed)..ligationPlot
> >>>>> 2010-02-25 17:12:04,059-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000017
> >>
> >>
> >>>>> type string value=output dataset=outdir (closed)
> >>>>> 2010-02-25 17:12:04,059-0600 INFO CloseDataset Partially
> closing
> >>>>> output for statement 88015
> >>>>> 2010-02-25 17:12:04,059-0600 INFO CloseDataset var is output
> >>>>> 2010-02-25 17:12:04,060-0600 INFO CloseDataset var hash is
> >>>>>
> >> 23848591
> >>
> >>>>> 2010-02-25 17:12:04,060-0600 INFO CloseDataset variable
> already
> >>>>> closed - skipping partial close processing
> >>>>> 2010-02-25 17:12:04,062-0600 INFO AbstractDataNode Adding
> handle
> >>>>> listener "F/modelOut.$[]/0" to
> >>>>> "org.griphyn.vdl.mapping.RootArrayDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000023
> >>
> >>
> >>>>> type LoopModelOut[] with no value at dataset=modelOut (not
> >>>>>
> >> closed)"
> >>
> >>>>> 2010-02-25 17:12:04,062-0600 INFO AbstractDataNode Adding
> handle
> >>>>> listener "F/org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000014
> >>
> >>
> >>>>> type int with no value at dataset=nSim (not closed)" to
> >>>>> "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000014
> >>
> >>
> >>>>> type int with no value at dataset=nSim (not closed)"
> >>>>> 2010-02-25 17:12:04,065-0600 INFO strtoi INTERNALPROC_START
> >>>>> thread=0-1-0-1 name=readData
> >>>>> 2010-02-25 17:12:04,068-0600 INFO AbstractDataNode Adding
> handle
> >>>>> listener "F/org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000042
> >>
> >>
> >>>>> type file with no value at dataset=f (not closed)" to
> >>>>> "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000042
> >>
> >>
> >>>>> type file with no value at dataset=f (not closed)"
> >>>>> 2010-02-25 17:12:04,068-0600 INFO echos PROCEDURE line=68
> >>>>> thread=0-1-0-0 name=echos
> >>>>> 2010-02-25 17:12:04,077-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000046
> >>
> >>
> >>>>> type string
> >>>>> value=_concurrent/f-7a608b5e-b445-46f4-8cb2-bff8a73b52ec-1-0
> >>>>> dataset=unnamed SwiftScript value (closed)
> >>>>> 2010-02-25 17:12:04,077-0600 INFO VDLFunction
> FUNCTIONPARAMETER
> >>>>> id=451004
> >>>>>
> >>>>>
> >>
> input=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000042
> >>
> >>
> >>>>> name=input
> >>>>> 2010-02-25 17:12:04,077-0600 INFO VDLFunction FUNCTION
> id=451004
> >>>>> name=filename
> >>>>>
> >>>>>
> >>
> result=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000046
> >>
> >>
> >>>>> 2010-02-25 17:12:04,077-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000047
> >>
> >>
> >>>>> type string value=input/T0510D1.pdb dataset=unnamed SwiftScript
> >>>>>
> >> value
> >>
> >>>>> (closed)
> >>>>> 2010-02-25 17:12:04,078-0600 INFO VDLFunction
> FUNCTIONPARAMETER
> >>>>> id=451005
> >>>>>
> >>>>>
> >>
> input=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000030
> >>
> >>
> >>>>> name=input
> >>>>> 2010-02-25 17:12:04,078-0600 INFO VDLFunction FUNCTION
> id=451005
> >>>>> name=filename
> >>>>>
> >>>>>
> >>
> result=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000047
> >>
> >>
> >>>>> 2010-02-25 17:12:04,078-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000048
> >>
> >>
> >>>>> type string value=output/data//T0510D1.pdb dataset=unnamed
> >>>>>
> >> SwiftScript
> >>
> >>>>> value (closed)
> >>>>> 2010-02-25 17:12:04,078-0600 INFO VDLFunction
> FUNCTIONPARAMETER
> >>>>> id=451006
> >>>>>
> >>>>>
> >>
> input=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000034
> >>
> >>
> >>>>> name=input
> >>>>> 2010-02-25 17:12:04,078-0600 INFO VDLFunction FUNCTION
> id=451006
> >>>>> name=filename
> >>>>>
> >>>>>
> >>
> result=tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000048
> >>
> >>
> >>>>> 2010-02-25 17:12:04,084-0600 INFO vdl:execute START
> >>>>>
> >> thread=0-1-0-0
> >>
> >>>>> tr=echo
> >>>>> 2010-02-25 17:12:04,085-0600 INFO vdl:execute START
> thread=0-1-8
> >>>>> tr=PrepLoop
> >>>>> 2010-02-25 17:12:04,112-0600 INFO WeightedHostScoreScheduler
> >>>>>
> >> Sorted:
> >>
> >>>>> [localhost:10,000.000(99.854):0/3 overload: 0]
> >>>>> 2010-02-25 17:12:04,112-0600 INFO WeightedHostScoreScheduler
> >>>>> CONTACT_SELECTED host=localhost, score=99.854
> >>>>> 2010-02-25 17:12:04,113-0600 INFO WeightedHostScoreScheduler
> >>>>>
> >> Sorted:
> >>
> >>>>> [localhost:10,000.000(99.854):1/3 overload: 0]
> >>>>> 2010-02-25 17:12:04,114-0600 INFO WeightedHostScoreScheduler
> >>>>> CONTACT_SELECTED host=localhost, score=99.854
> >>>>> 2010-02-25 17:12:04,120-0600 INFO GlobalSubmitQueue No global
> >>>>>
> >> submit
> >>
> >>>>> throttle set. Using default (100)
> >>>>> 2010-02-25 17:12:04,136-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524101) setting status to
> >>>>>
> >> Submitting
> >>
> >>>>> 2010-02-25 17:12:04,148-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524101) setting status to
> Submitted
> >>>>> 2010-02-25 17:12:04,148-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524101) setting status to Active
> >>>>> 2010-02-25 17:12:04,149-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524101) setting status to
> Completed
> >>>>> 2010-02-25 17:12:04,149-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION, identity=urn:0-1-0-0-1-1267139524101)
> >>>>> Completed. Waiting: 0, Running: 0. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,155-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524104) setting status to
> >>>>>
> >> Submitting
> >>
> >>>>> 2010-02-25 17:12:04,155-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524104) setting status to
> Submitted
> >>>>> 2010-02-25 17:12:04,155-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524104) setting status to Active
> >>>>> 2010-02-25 17:12:04,155-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524104) setting status to
> Completed
> >>>>> 2010-02-25 17:12:04,155-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION, identity=urn:0-1-0-0-1-1267139524104)
> >>>>> Completed. Waiting: 0, Running: 0. Heap size: 14M, Heap free:
> 4M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,158-0600 INFO vdl:initshareddir START
> >>>>> host=localhost - Initializing shared directory
> >>>>> 2010-02-25 17:12:04,161-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524106) setting status to
> Submitting
> >>>>> 2010-02-25 17:12:04,162-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524106) setting status to Submitted
> >>>>> 2010-02-25 17:12:04,162-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524106) setting status to Active
> >>>>> 2010-02-25 17:12:04,163-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524106) setting status to Completed
> >>>>> 2010-02-25 17:12:04,163-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION, identity=urn:0-1-8-1-1267139524106)
> >>>>> Completed. Waiting: 0, Running: 0. Heap size: 14M, Heap free:
> 4M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,185-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524109) setting status to
> Submitting
> >>>>> 2010-02-25 17:12:04,185-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524109) setting status to Submitted
> >>>>> 2010-02-25 17:12:04,187-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524109) setting status to Active
> >>>>> 2010-02-25 17:12:04,190-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524109) setting status to Completed
> >>>>> 2010-02-25 17:12:04,190-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_TRANSFER, identity=urn:0-1-8-1-1267139524109)
> >>>>> Completed. Waiting: 0, Running: 0. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,191-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524112) setting status to
> Submitting
> >>>>> 2010-02-25 17:12:04,191-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524112) setting status to Submitted
> >>>>> 2010-02-25 17:12:04,191-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524112) setting status to Active
> >>>>> 2010-02-25 17:12:04,236-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524112) setting status to Completed
> >>>>> 2010-02-25 17:12:04,236-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_TRANSFER, identity=urn:0-1-8-1-1267139524112)
> >>>>> Completed. Waiting: 0, Running: 0. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,237-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524115) setting status to
> Submitting
> >>>>> 2010-02-25 17:12:04,237-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524115) setting status to Submitted
> >>>>> 2010-02-25 17:12:04,237-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524115) setting status to Active
> >>>>> 2010-02-25 17:12:04,238-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524115) setting status to Completed
> >>>>> 2010-02-25 17:12:04,238-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION, identity=urn:0-1-8-1-1267139524115)
> >>>>> Completed. Waiting: 0, Running: 0. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,239-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524117) setting status to
> Submitting
> >>>>> 2010-02-25 17:12:04,239-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524117) setting status to Submitted
> >>>>> 2010-02-25 17:12:04,239-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524117) setting status to Active
> >>>>> 2010-02-25 17:12:04,240-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524117) setting status to Completed
> >>>>> 2010-02-25 17:12:04,240-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION, identity=urn:0-1-8-1-1267139524117)
> >>>>> Completed. Waiting: 0, Running: 0. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,241-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524119) setting status to
> Submitting
> >>>>> 2010-02-25 17:12:04,244-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524119) setting status to Submitted
> >>>>> 2010-02-25 17:12:04,244-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524119) setting status to Active
> >>>>> 2010-02-25 17:12:04,244-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524119) setting status to Completed
> >>>>> 2010-02-25 17:12:04,244-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION, identity=urn:0-1-8-1-1267139524119)
> >>>>> Completed. Waiting: 0, Running: 0. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,245-0600 INFO vdl:initshareddir END
> >>>>> host=localhost - Done initializing shared directory
> >>>>> 2010-02-25 17:12:04,248-0600 DEBUG vdl:execute2
> >>>>>
> >> THREAD_ASSOCIATION
> >>
> >>>>> jobid=echo-xkjtxaoj thread=0-1-0-0-1 host=localhost
> >>>>> replicationGroup=ukjtxaoj
> >>>>> 2010-02-25 17:12:04,250-0600 DEBUG vdl:execute2
> >>>>>
> >> THREAD_ASSOCIATION
> >>
> >>>>> jobid=PrepLoop-ykjtxaoj thread=0-1-8-1 host=localhost
> >>>>> replicationGroup=vkjtxaoj
> >>>>> 2010-02-25 17:12:04,255-0600 INFO vdl:createdirset START
> >>>>> jobid=echo-xkjtxaoj host=localhost - Initializing directory
> >>>>>
> >> structure
> >>
> >>>>> 2010-02-25 17:12:04,257-0600 INFO vdl:createdirs START
> >>>>> path=_concurrent dir=psim.loops-20100225-1712-3zrtb5i5/shared -
> >>>>> Creating directory structure
> >>>>> 2010-02-25 17:12:04,257-0600 INFO vdl:createdirset START
> >>>>> jobid=PrepLoop-ykjtxaoj host=localhost - Initializing directory
> >>>>> structure
> >>>>> 2010-02-25 17:12:04,258-0600 INFO vdl:createdirs START
> >>>>>
> >> path=input
> >>
> >>>>> dir=psim.loops-20100225-1712-3zrtb5i5/shared - Creating
> directory
> >>>>> structure
> >>>>> 2010-02-25 17:12:04,258-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524121) setting status to
> >>>>>
> >> Submitting
> >>
> >>>>> 2010-02-25 17:12:04,258-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524121) setting status to
> Submitted
> >>>>> 2010-02-25 17:12:04,258-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524121) setting status to Active
> >>>>> 2010-02-25 17:12:04,259-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524123) setting status to
> Submitting
> >>>>> 2010-02-25 17:12:04,259-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524123) setting status to Submitted
> >>>>> 2010-02-25 17:12:04,259-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524123) setting status to Active
> >>>>> 2010-02-25 17:12:04,261-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524121) setting status to
> Completed
> >>>>> 2010-02-25 17:12:04,261-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524123) setting status to Completed
> >>>>> 2010-02-25 17:12:04,261-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION, identity=urn:0-1-0-0-1-1267139524121)
> >>>>> Completed. Waiting: 0, Running: 1. Heap size: 14M, Heap free:
> 4M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,262-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION, identity=urn:0-1-8-1-1267139524123)
> >>>>> Completed. Waiting: 0, Running: 1. Heap size: 14M, Heap free:
> 4M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,262-0600 INFO vdl:createdirset END
> >>>>> jobid=echo-xkjtxaoj - Done initializing directory structure
> >>>>> 2010-02-25 17:12:04,263-0600 INFO vdl:createdirs START
> >>>>> path=output/data/ dir=psim.loops-20100225-1712-3zrtb5i5/shared
> -
> >>>>> Creating directory structure
> >>>>> 2010-02-25 17:12:04,263-0600 INFO vdl:dostagein START
> >>>>> jobid=echo-xkjtxaoj - Staging in files
> >>>>> 2010-02-25 17:12:04,263-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524126) setting status to
> Submitting
> >>>>> 2010-02-25 17:12:04,263-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524126) setting status to Submitted
> >>>>> 2010-02-25 17:12:04,264-0600 INFO vdl:dostagein END
> >>>>> jobid=echo-xkjtxaoj - Staging in finished
> >>>>> 2010-02-25 17:12:04,269-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524126) setting status to Active
> >>>>> 2010-02-25 17:12:04,274-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524126) setting status to Completed
> >>>>> 2010-02-25 17:12:04,274-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION, identity=urn:0-1-8-1-1267139524126)
> >>>>> Completed. Waiting: 0, Running: 0. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,275-0600 DEBUG vdl:execute2 JOB_START
> >>>>> jobid=echo-xkjtxaoj tr=echo arguments=[4]
> >>>>> tmpdir=psim.loops-20100225-1712-3zrtb5i5/jobs/x/echo-xkjtxaoj
> >>>>> host=localhost
> >>>>> 2010-02-25 17:12:04,275-0600 INFO vdl:createdirs START path=
> >>>>> dir=psim.loops-20100225-1712-3zrtb5i5/shared - Creating
> directory
> >>>>> structure
> >>>>> 2010-02-25 17:12:04,276-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524128) setting status to
> Submitting
> >>>>> 2010-02-25 17:12:04,276-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524128) setting status to Submitted
> >>>>> 2010-02-25 17:12:04,276-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524128) setting status to Active
> >>>>> 2010-02-25 17:12:04,276-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524128) setting status to Completed
> >>>>> 2010-02-25 17:12:04,276-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION, identity=urn:0-1-8-1-1267139524128)
> >>>>> Completed. Waiting: 0, Running: 0. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,277-0600 INFO vdl:createdirset END
> >>>>> jobid=PrepLoop-ykjtxaoj - Done initializing directory structure
> >>>>> 2010-02-25 17:12:04,278-0600 INFO vdl:dostagein START
> >>>>> jobid=PrepLoop-ykjtxaoj - Staging in files
> >>>>> 2010-02-25 17:12:04,283-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1-1267139524131) setting status to
> >>>>>
> >> Submitting
> >>
> >>>>> 2010-02-25 17:12:04,283-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1-1267139524131) setting status to
> Submitted
> >>>>> 2010-02-25 17:12:04,283-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1-1267139524131) setting status to Active
> >>>>> 2010-02-25 17:12:04,284-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-3-1267139524132) setting status to
> >>>>>
> >> Submitting
> >>
> >>>>> 2010-02-25 17:12:04,285-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-3-1267139524132) setting status to
> Submitted
> >>>>> 2010-02-25 17:12:04,287-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-3-1267139524132) setting status to Active
> >>>>> 2010-02-25 17:12:04,288-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-1-1267139524131) setting status to
> Completed
> >>>>> 2010-02-25 17:12:04,288-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION, identity=urn:0-1-8-1-1-1267139524131)
> >>>>> Completed. Waiting: 0, Running: 2. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,289-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-3-1267139524132) setting status to
> Completed
> >>>>> 2010-02-25 17:12:04,289-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION, identity=urn:0-1-8-1-3-1267139524132)
> >>>>> Completed. Waiting: 0, Running: 1. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,290-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-2-1267139524134) setting status to
> >>>>>
> >> Submitting
> >>
> >>>>> 2010-02-25 17:12:04,290-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-2-1267139524134) setting status to
> Submitted
> >>>>> 2010-02-25 17:12:04,290-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-2-1267139524134) setting status to Active
> >>>>> 2010-02-25 17:12:04,291-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-8-1-2-1267139524134) setting status to
> Completed
> >>>>> 2010-02-25 17:12:04,291-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION, identity=urn:0-1-8-1-2-1267139524134)
> >>>>> Completed. Waiting: 0, Running: 0. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,295-0600 INFO Execute jobid=echo-xkjtxaoj
> >>>>> task=Task(type=JOB_SUBMISSION,
> >>>>>
> >> identity=urn:0-1-0-0-1-1267139524137)
> >>
> >>>>> 2010-02-25 17:12:04,303-0600 DEBUG vdl:dostagein
> >>>>>
> >> FILE_STAGE_IN_START
> >>
> >>>>> file=file://localhost/input/T0510D1.range srchost=localhost
> >>>>> srcdir=input srcname=T0510D1.range desthost=localhost
> >>>>> destdir=psim.loops-20100225-1712-3zrtb5i5/shared/input
> >>>>>
> >> provider=file
> >>
> >>>>> 2010-02-25 17:12:04,304-0600 DEBUG vdl:dostagein
> >>>>>
> >> FILE_STAGE_IN_START
> >>
> >>>>> file=file://localhost/input/T0510D1.params srchost=localhost
> >>>>> srcdir=input srcname=T0510D1.params desthost=localhost
> >>>>> destdir=psim.loops-20100225-1712-3zrtb5i5/shared/input
> >>>>>
> >> provider=file
> >>
> >>>>> 2010-02-25 17:12:04,305-0600 DEBUG vdl:dostagein
> >>>>>
> >> FILE_STAGE_IN_START
> >>
> >>>>> file=file://localhost/input/T0510D1.pdb srchost=localhost
> >>>>>
> >> srcdir=input
> >>
> >>>>> srcname=T0510D1.pdb desthost=localhost
> >>>>> destdir=psim.loops-20100225-1712-3zrtb5i5/shared/input
> >>>>>
> >> provider=file
> >>
> >>>>> 2010-02-25 17:12:04,305-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=JOB_SUBMISSION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524137) setting status to
> >>>>>
> >> Submitting
> >>
> >>>>> 2010-02-25 17:12:04,305-0600 INFO JobSubmissionTaskHandler
> >>>>>
> >> Submitting
> >>
> >>>>> task Task(type=JOB_SUBMISSION,
> >>>>>
> >> identity=urn:0-1-0-0-1-1267139524137)
> >>
> >>>>> 2010-02-25 17:12:04,305-0600 INFO JobSubmissionTaskHandler
> >>>>>
> >> Submitting
> >>
> >>>>> single job
> >>>>> 2010-02-25 17:12:04,306-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=JOB_SUBMISSION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524137) setting status to
> Submitted
> >>>>> 2010-02-25 17:12:04,306-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-1-1267139524141) setting status to
> >>>>>
> >> Submitting
> >>
> >>>>> 2010-02-25 17:12:04,306-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-1-1267139524141) setting status to
> Submitted
> >>>>> 2010-02-25 17:12:04,306-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-2-1267139524139) setting status to
> >>>>>
> >> Submitting
> >>
> >>>>> 2010-02-25 17:12:04,306-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-2-1267139524139) setting status to
> Submitted
> >>>>> 2010-02-25 17:12:04,307-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-1-1267139524141) setting status to Active
> >>>>> 2010-02-25 17:12:04,307-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-2-1267139524139) setting status to Active
> >>>>> 2010-02-25 17:12:04,308-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-3-1267139524143) setting status to
> >>>>>
> >> Submitting
> >>
> >>>>> 2010-02-25 17:12:04,308-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-3-1267139524143) setting status to
> Submitted
> >>>>> 2010-02-25 17:12:04,312-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-2-1267139524139) setting status to
> Completed
> >>>>> 2010-02-25 17:12:04,312-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=JOB_SUBMISSION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524137) setting status to Active
> >>>>> 2010-02-25 17:12:04,313-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_TRANSFER, identity=urn:0-1-8-1-2-1267139524139)
> >>>>> Completed. Waiting: 0, Running: 3. Heap size: 14M, Heap free:
> 4M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,321-0600 DEBUG vdl:dostagein
> >>>>>
> >> FILE_STAGE_IN_END
> >>
> >>>>> file=file://localhost/input/T0510D1.range srchost=localhost
> >>>>> srcdir=input srcname=T0510D1.range desthost=localhost
> >>>>> destdir=psim.loops-20100225-1712-3zrtb5i5/shared/input
> >>>>>
> >> provider=file
> >>
> >>>>> 2010-02-25 17:12:04,323-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-1-1267139524141) setting status to
> Completed
> >>>>> 2010-02-25 17:12:04,324-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_TRANSFER, identity=urn:0-1-8-1-1-1267139524141)
> >>>>> Completed. Waiting: 0, Running: 2. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,325-0600 DEBUG vdl:dostagein
> >>>>>
> >> FILE_STAGE_IN_END
> >>
> >>>>> file=file://localhost/input/T0510D1.params srchost=localhost
> >>>>> srcdir=input srcname=T0510D1.params desthost=localhost
> >>>>> destdir=psim.loops-20100225-1712-3zrtb5i5/shared/input
> >>>>>
> >> provider=file
> >>
> >>>>> 2010-02-25 17:12:04,325-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-3-1267139524143) setting status to Active
> >>>>> 2010-02-25 17:12:04,327-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-8-1-3-1267139524143) setting status to
> Completed
> >>>>> 2010-02-25 17:12:04,327-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_TRANSFER, identity=urn:0-1-8-1-3-1267139524143)
> >>>>> Completed. Waiting: 0, Running: 1. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,327-0600 DEBUG vdl:dostagein
> >>>>>
> >> FILE_STAGE_IN_END
> >>
> >>>>> file=file://localhost/input/T0510D1.pdb srchost=localhost
> >>>>>
> >> srcdir=input
> >>
> >>>>> srcname=T0510D1.pdb desthost=localhost
> >>>>> destdir=psim.loops-20100225-1712-3zrtb5i5/shared/input
> >>>>>
> >> provider=file
> >>
> >>>>> 2010-02-25 17:12:04,327-0600 INFO vdl:dostagein END
> >>>>> jobid=PrepLoop-ykjtxaoj - Staging in finished
> >>>>> 2010-02-25 17:12:04,328-0600 DEBUG vdl:execute2 JOB_START
> >>>>> jobid=PrepLoop-ykjtxaoj tr=PrepLoop
> arguments=[input/T0510D1.pdb,
> >>>>> output/data//T0510D1.pdb]
> >>>>>
> tmpdir=psim.loops-20100225-1712-3zrtb5i5/jobs/y/PrepLoop-ykjtxaoj
> >>>>> host=localhost
> >>>>> 2010-02-25 17:12:04,339-0600 INFO Execute
> >>>>>
> >> jobid=PrepLoop-ykjtxaoj
> >>
> >>>>> task=Task(type=JOB_SUBMISSION,
> >>>>>
> >> identity=urn:0-1-8-1-1267139524148)
> >>
> >>>>> 2010-02-25 17:12:04,340-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=JOB_SUBMISSION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524148) setting status to
> Submitting
> >>>>> 2010-02-25 17:12:04,340-0600 INFO JobSubmissionTaskHandler
> >>>>>
> >> Submitting
> >>
> >>>>> task Task(type=JOB_SUBMISSION,
> >>>>>
> >> identity=urn:0-1-8-1-1267139524148)
> >>
> >>>>> 2010-02-25 17:12:04,340-0600 INFO JobSubmissionTaskHandler
> >>>>>
> >> Submitting
> >>
> >>>>> single job
> >>>>> 2010-02-25 17:12:04,340-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=JOB_SUBMISSION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524148) setting status to Submitted
> >>>>> 2010-02-25 17:12:04,343-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=JOB_SUBMISSION,
> >>
> >>>>> identity=urn:0-1-8-1-1267139524148) setting status to Active
> >>>>> 2010-02-25 17:12:04,458-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=JOB_SUBMISSION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524137) setting status to
> Completed
> >>>>> 2010-02-25 17:12:04,459-0600 INFO LateBindingScheduler
> >>>>> Task(type=JOB_SUBMISSION, identity=urn:0-1-0-0-1-1267139524137)
> >>>>> Completed. Waiting: 0, Running: 1. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,460-0600 DEBUG vdl:checkjobstatus START
> >>>>> jobid=echo-xkjtxaoj
> >>>>> 2010-02-25 17:12:04,461-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524150) setting status to
> >>>>>
> >> Submitting
> >>
> >>>>> 2010-02-25 17:12:04,462-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524150) setting status to
> Submitted
> >>>>> 2010-02-25 17:12:04,462-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524150) setting status to Active
> >>>>> 2010-02-25 17:12:04,462-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1267139524150) setting status to
> Completed
> >>>>> 2010-02-25 17:12:04,462-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION, identity=urn:0-1-0-0-1-1267139524150)
> >>>>> Completed. Waiting: 0, Running: 1. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,463-0600 INFO vdl:checkjobstatus SUCCESS
> >>>>> jobid=echo-xkjtxaoj - Success file found
> >>>>> 2010-02-25 17:12:04,463-0600 DEBUG vdl:execute2 STAGING_OUT
> >>>>> jobid=echo-xkjtxaoj
> >>>>> 2010-02-25 17:12:04,464-0600 INFO vdl:dostageout START
> >>>>> jobid=echo-xkjtxaoj - Staging out files
> >>>>> 2010-02-25 17:12:04,470-0600 DEBUG vdl:dostageout
> >>>>>
> >> FILE_STAGE_OUT_START
> >>
> >>>>> srcname=f-7a608b5e-b445-46f4-8cb2-bff8a73b52ec-1-0
> >>>>> srcdir=psim.loops-20100225-1712-3zrtb5i5/shared/_concurrent
> >>>>> srchost=localhost destdir=_concurrent desthost=localhost
> >>>>> provider=file
> >>>>> 2010-02-25 17:12:04,471-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1-1267139524152) setting status to
> >>>>>
> >> Submitting
> >>
> >>>>> 2010-02-25 17:12:04,471-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1-1267139524152) setting status to
> >>>>>
> >> Submitted
> >>
> >>>>> 2010-02-25 17:12:04,471-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1-1267139524152) setting status to
> Active
> >>>>> 2010-02-25 17:12:04,471-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1-1267139524152) setting status to
> >>>>>
> >> Completed
> >>
> >>>>> 2010-02-25 17:12:04,471-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION,
> identity=urn:0-1-0-0-1-1-1267139524152)
> >>>>> Completed. Waiting: 0, Running: 1. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,473-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-0-0-1-1-1267139524154) setting status to
> >>>>>
> >> Submitting
> >>
> >>>>> 2010-02-25 17:12:04,473-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-0-0-1-1-1267139524154) setting status to
> >>>>>
> >> Submitted
> >>
> >>>>> 2010-02-25 17:12:04,473-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-0-0-1-1-1267139524154) setting status to
> Active
> >>>>> 2010-02-25 17:12:04,474-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_TRANSFER,
> >>
> >>>>> identity=urn:0-1-0-0-1-1-1267139524154) setting status to
> >>>>>
> >> Completed
> >>
> >>>>> 2010-02-25 17:12:04,474-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_TRANSFER,
> identity=urn:0-1-0-0-1-1-1267139524154)
> >>>>> Completed. Waiting: 0, Running: 1. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,474-0600 DEBUG vdl:dostageout
> >>>>>
> >> FILE_STAGE_OUT_END
> >>
> >>>>> srcname=f-7a608b5e-b445-46f4-8cb2-bff8a73b52ec-1-0
> >>>>> srcdir=psim.loops-20100225-1712-3zrtb5i5/shared/_concurrent
> >>>>> srchost=localhost destdir=_concurrent desthost=localhost
> >>>>> provider=file
> >>>>> 2010-02-25 17:12:04,475-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1-1267139524157) setting status to
> >>>>>
> >> Submitting
> >>
> >>>>> 2010-02-25 17:12:04,475-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1-1267139524157) setting status to
> >>>>>
> >> Submitted
> >>
> >>>>> 2010-02-25 17:12:04,475-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1-1267139524157) setting status to
> Active
> >>>>> 2010-02-25 17:12:04,476-0600 DEBUG TaskImpl
> >>>>>
> >> Task(type=FILE_OPERATION,
> >>
> >>>>> identity=urn:0-1-0-0-1-1-1267139524157) setting status to
> >>>>>
> >> Completed
> >>
> >>>>> 2010-02-25 17:12:04,476-0600 INFO LateBindingScheduler
> >>>>> Task(type=FILE_OPERATION,
> identity=urn:0-1-0-0-1-1-1267139524157)
> >>>>> Completed. Waiting: 0, Running: 1. Heap size: 14M, Heap free:
> 5M,
> >>>>>
> >> Max
> >>
> >>>>> heap: 254M
> >>>>> 2010-02-25 17:12:04,479-0600 INFO vdl:dostageout END
> >>>>> jobid=echo-xkjtxaoj - Staging out finished
> >>>>> 2010-02-25 17:12:04,482-0600 DEBUG vdl:execute2 JOB_END
> >>>>> jobid=echo-xkjtxaoj
> >>>>> 2010-02-25 17:12:04,484-0600 INFO vdl:execute END_SUCCESS
> >>>>> thread=0-1-0-0 tr=echo
> >>>>> 2010-02-25 17:12:04,613-0600 INFO CloseDataset Closing
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000042
> >>
> >>
> >>>>> type file with no value at dataset=f (not closed)
> >>>>> 2010-02-25 17:12:04,614-0600 INFO AbstractDataNode Notifying
> >>>>>
> >> listener
> >>
> >>>>> "F/org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000042
> >>
> >>
> >>>>> type file with no value at dataset=f (closed)" about
> >>>>> "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000042
> >>
> >>
> >>>>> type file with no value at dataset=f (closed)"
> >>>>> 2010-02-25 17:12:04,614-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000042
> >>
> >>
> >>>>> type file with no value at dataset=f (closed)
> >>>>> 2010-02-25 17:12:04,614-0600 INFO AbstractDataNode Notifying
> >>>>>
> >> listener
> >>
> >>>>> "modelOut.$[]/0" about "org.griphyn.vdl.mapping.RootDataNode
> >>>>> identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000014
> >>
> >>
> >>>>> type int value=4.0 dataset=nSim (closed)"
> >>>>> 2010-02-25 17:12:04,615-0600 INFO echos PROCEDURE_END line=68
> >>>>> 2010-02-25 17:12:04,615-0600 INFO CloseDataset Partially
> closing
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000042
> >>
> >>
> >>>>> type file with no value at dataset=f (closed) for statement
> 88004
> >>>>> 2010-02-25 17:12:04,615-0600 INFO CloseDataset var is
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000042
> >>
> >>
> >>>>> type file with no value at dataset=f (closed)
> >>>>> 2010-02-25 17:12:04,615-0600 INFO CloseDataset var hash is
> >>>>>
> >> 21621663
> >>
> >>>>> 2010-02-25 17:12:04,615-0600 INFO CloseDataset variable
> already
> >>>>> closed - skipping partial close processing
> >>>>> 2010-02-25 17:12:04,682-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/1.[2].pdt
> >>>>> 2010-02-25 17:12:04,682-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/2.[0].cfg
> >>>>> 2010-02-25 17:12:04,682-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/3.[1].cfg
> >>>>> 2010-02-25 17:12:04,682-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/4.[3].log
> >>>>> 2010-02-25 17:12:04,682-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/4.[3].cfg
> >>>>> 2010-02-25 17:12:04,682-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/4.[3].pdt
> >>>>> 2010-02-25 17:12:04,682-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/4.[0].pdt
> >>>>> 2010-02-25 17:12:04,682-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/4.[1].pdb
> >>>>> 2010-02-25 17:12:04,682-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/4.[0].log
> >>>>> 2010-02-25 17:12:04,683-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/4.[1].log
> >>>>> 2010-02-25 17:12:04,683-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/4.[2].cfg
> >>>>> 2010-02-25 17:12:04,683-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/4.[2].log
> >>>>> 2010-02-25 17:12:04,683-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/4.[3].pdb
> >>>>> 2010-02-25 17:12:04,683-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/4.[2].pdb
> >>>>> 2010-02-25 17:12:04,683-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/4.[1].pdt
> >>>>> 2010-02-25 17:12:04,683-0600 INFO AbstractDataNode Found
> mapped
> >>>>>
> >> data
> >>
> >>>>> modelOut.$[]/4.[0].pdb
> >>>>> 2010-02-25 17:12:04,683-0600 INFO AbstractDataNode Notifying
> >>>>>
> >> listener
> >>
> >>>>> "F/modelOut.$[]/4" about
> >>>>>
> >> "org.griphyn.vdl.mapping.RootArrayDataNode
> >>
> >>>>> identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000023
> >>
> >>
> >>>>> type LoopModelOut[] with no value at dataset=modelOut (closed)"
> >>>>> 2010-02-25 17:12:04,683-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootArrayDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000023
> >>
> >>
> >>>>> type LoopModelOut[] with no value at dataset=modelOut (closed)
> >>>>> 2010-02-25 17:12:04,684-0600 INFO AbstractDataNode Notifying
> >>>>>
> >> listener
> >>
> >>>>> "F/4" about "org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000014
> >>
> >>
> >>>>> type int value=4.0 dataset=nSim (closed)"
> >>>>> 2010-02-25 17:12:04,684-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000014
> >>
> >>
> >>>>> type int value=4.0 dataset=nSim (closed)
> >>>>> 2010-02-25 17:12:04,685-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000069
> >>
> >>
> >>>>> type int value=3.0 dataset=unnamed SwiftScript value (closed)
> >>>>> 2010-02-25 17:12:04,685-0600 INFO strtoi INTERNALPROC_END
> >>>>> thread=0-1-0-1
> >>>>> 2010-02-25 17:12:04,685-0600 INFO CloseDataset Closing 4
> >>>>> 2010-02-25 17:12:04,686-0600 INFO strtoi ENDCOMPOUND
> >>>>>
> >> thread=0-1-0
> >>
> >>>>> 2010-02-25 17:12:04,686-0600 INFO CloseDataset Partially
> closing
> >>>>>
> >> 4
> >>
> >>>>> for statement 88012
> >>>>> 2010-02-25 17:12:04,686-0600 INFO CloseDataset var is 4
> >>>>> 2010-02-25 17:12:04,686-0600 INFO CloseDataset var hash is
> >>>>>
> >> 2221396
> >>
> >>>>> 2010-02-25 17:12:04,687-0600 INFO CloseDataset variable
> already
> >>>>> closed - skipping partial close processing
> >>>>> 2010-02-25 17:12:04,687-0600 INFO AbstractDataNode Adding
> handle
> >>>>> listener "F/org.griphyn.vdl.mapping.DataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000056
> >>
> >>
> >>>>> type ModelLog with no value at dataset=modelOut path=[3].log
> (not
> >>>>> closed)" to "org.griphyn.vdl.mapping.DataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000056
> >>
> >>
> >>>>> type ModelLog with no value at dataset=modelOut path=[3].log
> (not
> >>>>> closed)"
> >>>>> 2010-02-25 17:12:04,700-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000071
> >>
> >>
> >>>>> type int value=0.0 dataset=unnamed SwiftScript value (closed)
> >>>>> 2010-02-25 17:12:04,701-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000072
> >>
> >>
> >>>>> type int value=1.0 dataset=unnamed SwiftScript value (closed)
> >>>>> 2010-02-25 17:12:04,701-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000073
> >>
> >>
> >>>>> type int value=2.0 dataset=unnamed SwiftScript value (closed)
> >>>>> 2010-02-25 17:12:04,701-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.mapping.RootDataNode identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000074
> >>
> >>
> >>>>> type int value=3.0 dataset=unnamed SwiftScript value (closed)
> >>>>> 2010-02-25 17:12:04,701-0600 INFO AbstractDataNode closed
> >>>>> org.griphyn.vdl.karajan.lib.Range$1 identifier
> >>>>>
> >>>>>
> >>
> tag:benc at ci.uchicago.edu,2008:swift:dataset:20100225-1712-kjif48ad:720000000070
> >>
> >>
> >>>>> type int[] with no value at dataset=unnamed SwiftScript value
> >>>>> (closed)
> >>>>> 2010-02-25 17:12:04,702-0600 INFO doloopround FOREACH_IT_START
> >>>>> line=130 thread=0-1-9-1-1
> >>>>> 2010-02-25 17:12:04,703-0600 INFO doloopround FOREACH_IT_START
> >>>>> line=130 thread=0-1-9-1-2
> >>>>> 2010-02-25 17:12:04,703-0600 INFO doloopround FOREACH_IT_START
> >>>>> line=130 thread=0-1-9-1-3
> >>>>> 2010-02-25 17:12:04,703-0600 INFO doloopround FOREACH_IT_START
> >>>>> line=130 thread=0-1-9-1-4
> >>>>> 2010-02-25 17:12:04,703-0600 INFO doloopround SCOPE
> >>>>>
> >> thread=0-1-9-1-2
> >>
> >>>>> 2010-02-25 17:12:04,703-0600 INFO doloopround SCOPE
> >>>>>
> >> thread=0-1-9-1-3
> >>
> >>>>> 2010-02-25 17:12:04,704-0600 INFO doloopround SCOPE
> >>>>>
> >> thread=0-1-9-1-4
> >>
> >>>>> 2010-02-25 17:12:04,707-0600 INFO loopmodel PROCEDURE line=117
> >>>>> thread=0-1-9-1-2-1 name=loopModel
> >>>>> 2010-02-25 17:12:04,7
>
> [Message truncated]
--
Michael Wilde
Computation Institute, University of Chicago
Mathematics and Computer Science Division
Argonne National Laboratory
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