[Swift-devel] Swift PBS coaster jobs seem to bypass automounter

[Michael Wilde]

As far as I can tell, the same problem occurs in the plain PBS provider.

I'll try to capture the pbs submit file and see if the error can be reproduced submitting the same file manually.

- Mike

----- wilde at mcs.anl.gov wrote:

> Mihael, Neil Best is having problems accessing PADS datasets on the
> SEE project from Swift jobs run to the coaster pbs provider.
> 
> The same file access works fine from a simple qsub job or a qsub -I
> 
> The path that's unreachable/unmounted from a Swift PBS coaster job
> is:
> 
>   /gpfs/pads
> 
> In that dir, ls run under swift sees only:
> 
> drwxr-xr-x 5 root root 4096 Feb 25 12:35 scratch
> 
> ...while it should see the files below. I'm debugging further to find
> out why.
> Something different in the user startup processing under Swift than
> under plain qsub?
> 
> - Mike
> 
> 
> login1$ ls -l 
> total 10848
> lrwxrwxrwx  1 root  root         21 Jun 17  2009 angle ->
> projects/CI-NCR000005/
> -rw-r--r--  1 root  root    3491069 Jun  2  2009 bad-files
> drwxr-xr-x  2 root  root      32768 Jan  9 08:53 cnfs/
> lrwxrwxrwx  1 root  root         21 Jun 15  2009 esg ->
> projects/CI-ATM000007/
> ----------  1 root  root      20608 Feb 25 13:23 fileset.quota
> lrwxrwxrwx  1 root  root         21 Jun 23  2009 flash ->
> projects/CI-AST000010/
> drwxrwsr-x 32 root  fmri      32768 Jan  8 12:42 fmri/
> lrwxrwxrwx  1 root  root         21 Jun 15  2009 gedi ->
> projects/CI-IBN000008/
> lrwxrwxrwx  1 root  root         25 Jun 15  2009 gedi-dev ->
> projects/CI-IBN000008/dev
> lrwxrwxrwx  1 root  root         21 Jun 19  2009 gridts ->
> projects/CI-CCR000016/
> ----------  1 root  root      51840 Feb 25 13:23 group.quota
> lrwxrwxrwx  1 root  root         21 Jun 23  2009 i2u2 ->
> projects/CI-SEE000014/
> lrwxrwxrwx  1 root  root         21 Jun 23  2009 ligandatlas ->
> projects/CI-MCB000012/
> lrwxrwxrwx  1 root  root         21 Jun 17  2009 margoliash ->
> projects/CI-IBN000003/
> lrwxrwxrwx  1 root  root         21 Jun 19  2009 media ->
> projects/CI-STA000015/
> drwxrwsr-x 21 root  newslab   32768 Sep 12 11:30 newslab/
> drwxrwsr-x  9 wilde oops      32768 Feb 24 13:59 oops/
> lrwxrwxrwx  1 root  root         21 Jun 19  2009 osgedu ->
> projects/CI-SEE000004/
> drwxr-xr-x 41 root  root      32768 Feb 16 21:25 projects/
> drwxr-xr-x 31 root  root      32768 Feb 25 10:11 scratch/
> lrwxrwxrwx  1 root  root         21 Jun 23  2009 swift ->
> projects/CI-CCR000013/
> drwxr-xr-x  2 grog  root      32768 Jan  9 11:38 test/
> ----------  1 root  root      89728 Feb 25 13:23 user.quota
> lrwxrwxrwx  1 root  root         21 Jun 19  2009 whitelab ->
> projects/CI-MCB000017/
> login1$ pwd
> /gpfs/pads
> login1$ df .
> Filesystem           1K-blocks      Used Available Use% Mounted on
> nfs.ci.uchicago.edu:/exports/pads-gpfs
>                      359446007808 136176995328 223269012480  38%
> /autonfs/gpfs-pads
> login1$ 
> 
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