[Swift-devel] Problems with Swift trunk on abe

[Michael Wilde]

What seems like the a build of the same Swift & CoG svn revision is 
working on communicado but giving strange and transient results on Abe.

A series of 5 runs of the same code (with .xml and .kml files left in 
place) give the set of errors below.

I will try to use the release build on communicado, to see if this is 
being caused by some Java compiler difference on Abe.

Suggestions welcome. Mihael, I can get you the logs - they are on abe in 
~wilde/run.58, along with the source: psim.basicex1.swift

- Mike

Output with a few progress and blank lines removed:

(full output is in: http://www.ci.uchicago.edu/~wilde/abe.swiftproblem.txt )

honest4$ ls

Protein.map*  Protein.map~*  etc  input@  logs/  psim.basicex1.swift* 
sites.xml  t.swift*  t.swift~*  tc  tc~

honest4$ swift -tc.file tc -sites.file sites.xml psim.basicex1.swift

Swift svn swift-r3186 cog-r2572
RunID: 20091103-0750-p7z85z61
Execution failed:
         Argument size mismatch. Got 5 names and 0 values

honest4$ swift -tc.file tc -sites.file sites.xml psim.basicex1.swift

Swift svn swift-r3186 cog-r2572
RunID: 20091103-0751-sfxthnne
Execution failed:
         Argument size mismatch. Got 5 names and 0 values

honest4$ swift -tc.file tc -sites.file sites.xml psim.basicex1.swift

Swift svn swift-r3186 cog-r2572
RunID: 20091103-0751-oxnhztrc
Progress:
Execution failed:
         Argument size mismatch. Got 5 names and 0 values

honest4$ swift -tc.file tc -sites.file sites.xml psim.basicex1.swift

Swift svn swift-r3186 cog-r2572
RunID: 20091103-0751-amtfuvq9
Execution failed:
         Variable not found: path

honest4$ swift -tc.file tc -sites.file sites.xml psim.basicex1.swift

Swift svn swift-r3186 cog-r2572
RunID: 20091103-0751-b4sr44x2
Execution failed:
         Ex098
org.globus.cog.karajan.workflow.KarajanRuntimeException: Invalid 
identifier: [$, org.griphyn.vdl.mapping.DataNode identifier tag:benc at ci.uch\
icago.edu,2008:swift:dataset:20091103-0751-b65c863d:720000000020 type 
ProtGeo with no value at dataset=structure path=[1] (not closed)]
         at 
org.globus.cog.karajan.util.TypeUtil.toIdentifier(TypeUtil.java:286)
...
         at java.lang.Thread.run(Thread.java:595)
Variable not found: path
honest4$