[Swift-devel] "multiple writers-in-iterate" problem
Michael Wilde
wilde at mcs.anl.gov
Tue Jun 9 14:56:34 CDT 2009
Ben, can you fix this in the next release?
-------- Original Message --------
Subject: Re: [Swift-devel] continued questions on iterate
Date: Sun, 01 Mar 2009 23:39:42 -0600
From: Michael Wilde <wilde at mcs.anl.gov>
To: swift-devel <swift-devel at ci.uchicago.edu>
References: <49AB6653.6010306 at mcs.anl.gov>
Im able to work around this by moving the s[0] assignments inside the
iterate block, in an if(i==0) {} else {} construct.
Still, it seems the restriction is not intended.
- Mike
On 3/1/09 10:53 PM, Michael Wilde wrote:
> This program:
>
> string s[];
> s[0]="hi ";
> iterate i {
> s[i+1] = @strcat(s[i],"hi ");
> trace(s[i]);
> } until(i==5);
>
> Gives:
>
> com$ swift it4.swift
> Could not start execution.
> variable s has multiple writers.
>
> --
> Its similar to the tutorial example:
>
> counterfile a[] <simple_mapper;prefix="foldout">;
>
> a[0] = echo("793578934574893");
>
> iterate v {
> a[v+1] = countstep(a[v]);
> print("extract int value ", at extractint(a[v+1]));
> } until (@extractint(a[v+1]) <= 1);
>
> --
>
> ...which I reported earlier as having problems (I think in addition to
> the one above?)
>
> This is using the latest swift, rev 2631, and latest cog.
>
> I thought I had issues like this licked, but then updated the code to
> get closer to what the user needs.
>
> In this example, I dont see any violation of single-assignment, but
> apparently swift does.
>
> The full example that the test case above is for is at:
> www.ci.uchicago.edu/~wilde/oops8.swift, which encounters the same
> multiple-writer problem.
>
> I start with an initial "secondary structure" string of all A's, same
> length as the protein sequence. After each folding round, a new
> structure is derived for analysis and used as the starting point for the
> next round. This has the same data access pattern as array s[] above:
>
> foreach p, pn in protein {
> OOPSOut result[][] <simple_mapper; prefix=@strcat("output/",p,"/")>;
> SecSeq secseq[] <simple_mapper;
> prefix=@strcat("seqseq/",p,"/"),suffix=".secseq">;
> OOPSIn oopsin <ext; exec="OOPSIn.map.sh", i="input", p=protein>;
> secseq[0] = sedfasta(oopsin.fasta, ["-e","s/./A/g"]);
> boolean converged[];
> iterate i {
> SecSeq s;
> result[i] = doRound(p,oopsin,secseq[i],i);
> (converged[i],s) = analyzeResult(result[i], p, i, secseq[i]);
> secseq[i+1] = s;
> } until (converged[i] || (i==3));
> }
>
> In this case, I get the same message for array secseq (varable has
> multiple writers).
>
> I
>
>
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