[Swift-devel] Re: BLAST on Swift

Ben Clifford benc at hawaga.org.uk
Fri Nov 21 23:01:13 CST 2008


> I'd like to try this script out on Ranger for a full blast run.
> Anyone have preconfigured sites.xml for this system?

skenny gave me this the other day. It might work for you:

<pool handle="RANGER">
   <profile namespace="karajan" key="initialScore">2</profile>
    <profile namespace="karajan" key="jobThrottle">1</profile>
    <filesystem provider="coaster" 
url="gt2://gatekeeper.ranger.tacc.teragrid.org"/>
    <profile namespace="globus" key="coastersPerNode">16</profile>
    <execution provider="coaster" 
url="gatekeeper.ranger.tacc.teragrid.org" jobManager="gt2:gt2:SGE"/>
    <workdirectory>/work/00640/tg458015</workdirectory>
  </pool> 


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