[Swift-devel] latest attempt with GRAM4

[Mike Kubal]

Hello All,

I am running with the cog and swift from svn as of
Monday afternoon, 2/11. The swift script ran
successfully when using pre-ws, but failed with
ws-gram. I am also running with kickstart on, but will
now test with kickstart off to see if this is the
problem. This is the error I get back. (I rsynced the
log files to Ben's dir at UC, job gtxa3945 is the one
that failed). 

Failed to transfer kickstart records from
run_MD_pipeline_loop_for_impdh-20080212-1152-gtxa3945/kickstart/l/UC-64Exception
in getFile
        task:transfer @ vdl-int.k, line: 322
        sys:try @ vdl-int.k, line: 322
        vdl:transferkickstartrec @ vdl-int.k, line:
409
        sys:set @ vdl-int.k, line: 409
        sys:sequential @ vdl-int.k, line: 409
        sys:try @ vdl-int.k, line: 408
        sys:else @ vdl-int.k, line: 407
        sys:if @ vdl-int.k, line: 405
        sys:set @ vdl-int.k, line: 404
        sys:catch @ vdl-int.k, line: 396
        sys:try @ vdl-int.k, line: 354
        task:allocatehost @ vdl-int.k, line: 334
        vdl:execute2 @ execute-default.k, line: 23
        sys:restartonerror @ execute-default.k, line:
21
        sys:sequential @ execute-default.k, line: 19
        sys:try @ execute-default.k, line: 18
        sys:if @ execute-default.k, line: 17
        sys:then @ execute-default.k, line: 16
        sys:if @ execute-default.k, line: 15
        vdl:execute @
run_MD_pipeline_loop_for_impdh.kml, line: 67
        prepare_ligand @
run_MD_pipeline_loop_for_impdh.kml, line: 585
        sys:sequential @
run_MD_pipeline_loop_for_impdh.kml, line: 584
        sys:parallel @
run_MD_pipeline_loop_for_impdh.kml, line: 583
        sys:parallelfor @
run_MD_pipeline_loop_for_impdh.kml, line: 450
        sys:sequential @
run_MD_pipeline_loop_for_impdh.kml, line: 449
        vdl:mainp @
run_MD_pipeline_loop_for_impdh.kml, line: 448
        mainp @ vdl.k, line: 150
        vdl:mains @
run_MD_pipeline_loop_for_impdh.kml, line: 447
        vdl:mains @
run_MD_pipeline_loop_for_impdh.kml, line: 447
        rlog:restartlog @
run_MD_pipeline_loop_for_impdh.kml, line: 446
        kernel:project @
run_MD_pipeline_loop_for_impdh.kml, line: 2
       
run_MD_pipeline_loop_for_impdh-20080212-1152-gtxa3945
Caused by:
org.globus.cog.abstraction.impl.file.FileResourceException:
Exception in getFile
Caused by: org.globus.ftp.exception.ServerException:
Server refused performing the request. Custom message:
 (error code 1) [Nested exception message:  Custom
message: Unexpected reply: 500-Command failed. :
globus_l_gfs_file_open failed.
500-globus_xio: Unable to open file
/home/kubal/Swift_Runs/run_MD_pipeline_loop_for_impdh-20080212-1152-gtxa3945/kickstart/l/amberize_ligand-lqshnboi-kickstart.xml
500-globus_xio: System error in open: No such file or
directory
500-globus_xio: A system call failed: No such file or
directory
500-
500 End.] [Nested exception is
org.globus.ftp.exception.UnexpectedReplyCodeException:
 Custom message: Unexpected reply: 500-Command failed.
: globus_l_gfs_file_open failed.
500-globus_xio: Unable to open file
/home/kubal/Swift_Runs/run_MD_pipeline_loop_for_impdh-20080212-1152-gtxa3945/kickstart/l/amberize_ligand-lqshnboi-kickstart.xml
500-globus_xio: System error in open: No such file or
directory
500-globus_xio: A system call failed: No such file or
directory
500-
500 End.]

--- Ben Clifford <benc at hawaga.org.uk> wrote:

> 
> On Mon, 11 Feb 2008, Mihael Hategan wrote:
> 
> > Also, r1876 updates the gram4 client to a patched
> version of 4.0.6 which 
> > seems to eat less memory than 4.0.6 and earlier.
> 
> For source code reproducibility when some sucker
> wants to go look at the 
> source code, can you label the gram jars with a
> timestamp (until such time 
> as GT moves to a version control system with commit
> IDs)?
> 
> -- 
> _______________________________________________
> Swift-devel mailing list
> Swift-devel at ci.uchicago.edu
>
http://mail.ci.uchicago.edu/mailman/listinfo/swift-devel
> 
> 



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