[Swift-devel] running MolDyn...

[Ioan Raicu]

Hi all,
I am trying to run MolDyn, and I am getting some exceptions early on in 
the workflow. 

> iraicu at viper:~/swift> swift -tc.file tc-uc.data -sites.file 
> sites-uc-64.xml MolDyn-2-loops.swift
>
> Swift v0.2-dev
>
> RunID: 7i4yq1hr6uxb0
> pre_ch started
> 2007-09-07 00:59:14,181 WARN  submitQueue.NonBlockingSubmit 
> [pool-1-thread-1,notifyPreviousQueue:68] Warning: Task handler throws 
> exception but does not set status
> java.lang.Exception: java.lang.NoSuchFieldError: DOCUMENT
>         at 
> org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.run(NonBlockingSubmit.java:92)
>         at 
> edu.emory.mathcs.backport.java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:431)
>         at 
> edu.emory.mathcs.backport.java.util.concurrent.FutureTask.run(FutureTask.java:166)
>         at 
> edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:643)
>         at 
> edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:668)
>         at java.lang.Thread.run(Thread.java:534)
> Caused by: java.lang.NoSuchFieldError: DOCUMENT
>         at 
> org.globus.GenericPortal.stubs.Factory.bindings.FactoryPortTypeSOAPBindingStub._initOperationDesc1(FactoryPortTypeSOAPBindingStub.java:31)
>         at 
> org.globus.GenericPortal.stubs.Factory.bindings.FactoryPortTypeSOAPBindingStub.<clinit>(FactoryPortTypeSOAPBindingStub.java:20)
>         at 
> org.globus.GenericPortal.stubs.Factory.service.FactoryServiceLocator.getFactoryPortTypePort(FactoryServiceLocator.java:55)
>         at 
> org.globus.GenericPortal.stubs.Factory.service.FactoryServiceAddressingLocator.getFactoryPortTypePort(FactoryServiceAddressingLocator.java:22)
>         at 
> org.globus.cog.abstraction.impl.execution.deef.ResourcePool.createResources(ResourcePool.java:117)
>         at 
> org.globus.cog.abstraction.impl.execution.deef.ResourcePool.instance(ResourcePool.java:77)
>         at 
> org.globus.cog.abstraction.impl.execution.deef.JobSubmissionTaskHandler.doSubmit(JobSubmissionTaskHandler.java:146)
>         at 
> org.globus.cog.abstraction.impl.execution.deef.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:81)
>         at 
> org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:54)
>         at 
> org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.run(NonBlockingSubmit.java:82)
>         ... 5 more
> java.lang.NoSuchFieldError: DOCUMENT
>         at 
> org.globus.GenericPortal.stubs.Factory.bindings.FactoryPortTypeSOAPBindingStub._initOperationDesc1(FactoryPortTypeSOAPBindingStub.java:31)
>         at 
> org.globus.GenericPortal.stubs.Factory.bindings.FactoryPortTypeSOAPBindingStub.<clinit>(FactoryPortTypeSOAPBindingStub.java:20)
>         at 
> org.globus.GenericPortal.stubs.Factory.service.FactoryServiceLocator.getFactoryPortTypePort(FactoryServiceLocator.java:55)
>         at 
> org.globus.GenericPortal.stubs.Factory.service.FactoryServiceAddressingLocator.getFactoryPortTypePort(FactoryServiceAddressingLocator.java:22)
>         at 
> org.globus.cog.abstraction.impl.execution.deef.ResourcePool.createResources(ResourcePool.java:117)
>         at 
> org.globus.cog.abstraction.impl.execution.deef.ResourcePool.instance(ResourcePool.java:77)
>         at 
> org.globus.cog.abstraction.impl.execution.deef.JobSubmissionTaskHandler.doSubmit(JobSubmissionTaskHandler.java:146)
>         at 
> org.globus.cog.abstraction.impl.execution.deef.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:81)
>         at 
> org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:54)
>         at 
> org.globus.cog.karajan.scheduler.submitQueue.NonBlockingSubmit.run(NonBlockingSubmit.java:82)
>         at 
> edu.emory.mathcs.backport.java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:431)
>         at 
> edu.emory.mathcs.backport.java.util.concurrent.FutureTask.run(FutureTask.java:166)
>         at 
> edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:643)
>         at 
> edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:668)
>         at java.lang.Thread.run(Thread.java:534)

Note that the same exact workflow and settings work perfect on the same 
machine, same credentials, just a different install.
> nefedova at viper:~/alamines> swift -tc.file tc-uc.data -sites.file 
> sites-uc-64.xml MolDyn-2-loops.swift
> Unable to find required classes (javax.activation.DataHandler and 
> javax.mail.internet.MimeMultipart). Attachment support is disabled.
>
> Swift v0.2-dev
>
> RunID: 8cnditl4zu192
> pre_ch started
> pre_ch completed
> antch started
> antch started
> antch completed
> chrm started
> antch completed
> chrm started
Any hints on where to start looking for the problem?

Thanks,
Ioan

-- 
============================================
Ioan Raicu
Ph.D. Student
============================================
Distributed Systems Laboratory
Computer Science Department
University of Chicago
1100 E. 58th Street, Ryerson Hall
Chicago, IL 60637
============================================
Email: iraicu at cs.uchicago.edu
Web:   http://www.cs.uchicago.edu/~iraicu
       http://dsl.cs.uchicago.edu/
============================================
============================================