[Swift-devel] dot error

[Veronika V. Nefedova]

would it be possible to fix it ? I really would need to produce a few 
pictures of the workflow...

Thanks,

Nika

At 10:10 PM 3/9/2007, Mihael Hategan wrote:
>On Fri, 2007-03-09 at 21:01 -0600, Tiberiu Stef-Praun wrote:
> > Bad dot specification
>
>:)
>Labels should be quoted. That still doesn't explain why dot doesn't
>complain.
>
> >
> >
> > On 3/9/07, Mihael Hategan <hategan at mcs.anl.gov> wrote:
> > > If it's a valid .dot specification, dot shouldn't blow.
> > > If it's not a valid dot specification, dot should complain, and we
> > > should fix swift to produce valid .dot files.
> > >
> > > We need to figure out which one it is.
> > >
> > > Mihael
> > >
> > > On Fri, 2007-03-09 at 18:08 -0600, Veronika V. Nefedova wrote:
> > > > It is a simple graph: a-b-c-d (where a,b,c are single nodes, and d 
> is 68
> > > > parallel nodes). Could the number of parallel nodes be a problem?
> > > >
> > > > Nika
> > > >
> > > > At 06:00 PM 3/9/2007, Mihael Hategan wrote:
> > > > >No clue. Looks like a pretty big graph. I can somewhat view 
> things, but
> > > > >it behaves weirdly.
> > > > >
> > > > >On Fri, 2007-03-09 at 16:50 -0600, Veronika V. Nefedova wrote:
> > > > > > Thank you!
> > > > > >
> > > > > > Done. Its in my home dir on evitable.
> > > > > >
> > > > > > At 04:38 PM 3/9/2007, you wrote:
> > > > > > >No walk. Only a step. Instead of -Tpng, -Tps. And the name 
> eventually
> > > > > > >changed to graph_big.ps. Ok, it was two steps.
> > > > > > >
> > > > > > >Mihael
> > > > > > >
> > > > > > >On Fri, 2007-03-09 at 15:37 -0600, Veronika V. Nefedova wrote:
> > > > > > > > You'd have to walk me through this. I do not know how to 
> produce the ps
> > > > > > > > file out of dot file...
> > > > > > > > Sorry!
> > > > > > > >
> > > > > > > > At 03:31 PM 3/9/2007, you wrote:
> > > > > > > > >Identify from ImageMagick quickly eats up all the memory 
> when I try to
> > > > > > > > >run it on that file.
> > > > > > > > >I'm tempted to conclude that something might be broken 
> with dot.
> > > > > > > > >Can you try producing a PostScript file instead?
> > > > > > > > >
> > > > > > > > >Mihael
> > > > > > > > >
> > > > > > > > >On Fri, 2007-03-09 at 15:31 -0600, Veronika V. Nefedova wrote:
> > > > > > > > > > Nope!
> > > > > > > > > >
> > > > > > > > > > [nefedova at evitable ~]$ dot -ograph_big.png -Tpng
> > > > > > > > > > swift-MolDyn-free-01dqgqzbhns11.dot
> > > > > > > > > > [nefedova at evitable ~]$ cp graph_big.png public_html/
> > > > > > > > > > [nefedova at evitable ~]$ which dot
> > > > > > > > > > /usr/bin/dot
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > At 03:25 PM 3/9/2007, Mihael Hategan wrote:
> > > > > > > > > > >Did dot complain about anything?
> > > > > > > > > > >
> > > > > > > > > > >On Fri, 2007-03-09 at 14:55 -0600, Veronika V. 
> Nefedova wrote:
> > > > > > > > > > > > Hi,
> > > > > > > > > > > >
> > > > > > > > > > > > Not sure what happened -- but I was unable to 
> produce (or
> > > > > > > display) the
> > > > > > > > > > > > correct png file out of dot file that was generated 
> by swift
> > > > > > > (after the
> > > > > > > > > > > > workflow was done).
> > > > > > > > > > > >
> > > > > > > > > > > > I put my dot file on evitable in
> > > > > > > > > > > ~nefedova/swift-MolDyn-free-01dqgqzbhns11.dot
> > > > > > > > > > > > Then I ran the dot command to generate the png file:
> > > > > > > > > > > > $dot -ograph_big.png -Tpng 
> swift-MolDyn-free-01dqgqzbhns11.dot
> > > > > > > > > > > >
> > > > > > > > > > > > Then I tried to display it in the browser and got this:
> > > > > > > > > > > > The image 
> "http://www.ci.uchicago.edu/~nefedova/graph_big.png"
> > > > > > > > > cannot be
> > > > > > > > > > > > displayed, because it contains errors.
> > > > > > > > > > > >
> > > > > > > > > > > > Any idea what is wrong here?
> > > > > > > > > > > >
> > > > > > > > > > > > Thanks,
> > > > > > > > > > > >
> > > > > > > > > > > > Nika
> > > > > > > > > > > >
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