[Swift-devel] mapper problem or ...?

[Veronika V. Nefedova]

I think I am confused. Sorry!
what will be the type of 'whamfiles' ? If its a string - will the swift 
know to brake it down to filenames and stage them all in ?
Also - is there a mapper (or whatever) that can map the list of *logical* 
file names to an array ? (thats what I was trying to do).

Thanks!

Nika


At 04:54 PM 3/13/2007, Mihael Hategan wrote:
>Oh my :)
>@whamfiles_m002 is known by the system at all times. That means
>GENERATOR does not need to wait for the actual files to be there since
>it knows very well what @whamfiles_m002 is (the list of names).
>
>You should try this instead:
>...
>... GENERATOR(whamfiles, str) {
>    app {
>      generator @whamfiles, str;
>    }
>}
>
>... = GENERATOR(whamfiles_m002, "m002")
>
>Mihael
>
>On Tue, 2007-03-13 at 16:46 -0500, Veronika V. Nefedova wrote:
> > Hi,
> >
> > I have a question:
> >
> > I am using a fixed_array_mapper to pass some 68 files as an input to my
> > application called GENERATOR. I need to use the mapper since the number of
> > input files is unknown before the workflow starts. Here is how I use it:
> > file whamfiles_m002[] <fixed_array_mapper;files=" solv_chg_a0_m002_wham,
> > solv_chg_a1_m002_wham, solv_chg_a10_m002_wham, <snip -- many files, you 
> get
> > the idea>, solv_repu_0_0DOT2_b1_m002_wham">;
> >
> > These files are all generated by stage four of my workflow, each file is
> > mapped to a physical filename, for example:
> >
> > file solv_chg_a0_m002_wham  <"solv_chg_a0_m002.wham">;
> > and this particular file is produced this way:
> > (solv_chg_a0_m002_wham, solv_chg_a0_m002_crd, solv_chg_a0_m002_out,
> > solv_chg_a0_m002_done) = CHARMM2 (standn, gaff_prm, gaff_rft,
> > rtf_file_m002, prm_file_m002, psf_file_m002, crd_eq_file_m002,
> > solv_chg_a0_m002_prt, "prtfile:solv_chg_a0", "system:solv_m002",
> > "stitle:m002", "rtffile:parm03_gaff_all.rtf",
> > "paramfile:parm03_gaffnb_all.prm", "gaff:m002_am1", "stage:chg",
> > "urandseed:5395098", "dirname:solv_chg_a0_m002");
> >
> > Then I call my application (the last stage of my workflow, stage five)
> >
> > (solv_chg_m002, solv_disp_m002, solv_repu_0DOT2_0DOT3_m002DOTwham,
> > solv_repu_0DOT3_0DOT4_m002DOTwham, solv_repu_0DOT4_0DOT5_m002DOTwham,
> > solv_repu_0DOT5_0DOT6_m002DOTwham, solv_repu_0DOT6_0DOT7_m002DOTwham,
> > solv_repu_0DOT7_0DOT8_m002DOTwham, solv_repu_0DOT8_0DOT9_m002DOTwham,
> > solv_repu_0DOT9_1_m002DOTwham, solv_repu_0_0DOT2_m002DOTwham ) = GENERATOR
> > (@whamfiles_m002, "m002");
> >
> > And then when I start my workflow, the GENERATOR starts right away. I am
> > not sure why. Does the mapper look for the physical files on the disk and
> > when finds them - starts right away ? I do have the needed files in the
> > directory from my previous runs. Or there is something else wrong here ?
> >
> > 109] wiggum /sandbox/ydeng/alamines > Swift V 0.0405
> > RunID: b0n2liektep92
> > pre_ch started              <---------- thats the first stage
> > generator_cat started    <----------- not supposed to start now!
> > generator_cat started
> >
> > My complete dtm file is in /home/nefedova/swift.dtm on
> > terminable.ci.uchicago, but its pretty big...
> >
> > Thanks,
> >
> > Nika
> >
> >
> > _______________________________________________
> > Swift-devel mailing list
> > Swift-devel at ci.uchicago.edu
> > http://mail.ci.uchicago.edu/mailman/listinfo/swift-devel
> >