[Swift-devel] Re: email for Mike and Ian
Ben Clifford
benc at hawaga.org.uk
Tue Jun 19 18:51:44 CDT 2007
This looks like bug 49:
http://bugzilla.mcs.anl.gov/swift/show_bug.cgi?id=49
I just spent the evening tracking it down with Nika.
As far as I can tell, that means she's been using a swift compiler that
has been at least 2 months old right up until she just updated it this
evening.
*please* try to report problems against something resembling a recent
checkout-and-build.
Furthermore, when I finally tracked it down, turns out that its because of
a bug in the SwiftScript source. I fix *exactly* this problem, here:
Date: Sat, 28 Apr 2007 08:39:03 +0000 (GMT)
From: Ben Clifford <benc at hawaga.org.uk>
To: Veronika V. Nefedova <nefedova at mcs.anl.gov>
Cc: swift-devel at ci.uchicago.edu
Subject: Re: [Swift-devel] nightly built 070426
*please* try to actually use bugfixes that people give you.
Bad users!
Go to your room!
On Tue, 19 Jun 2007, Yong Zhao wrote:
> I tried the restart feature yesterday and it seemed to work fine with the
> MolDyn workflow. I am not sure what was the problem that you encountered.
>
> About the compile problem, maybe Ben can take a look since he made a few
> changes to the translation.
>
> yong.
>
> On Tue, 19 Jun 2007, Veronika Nefedova wrote:
>
> > Yong,
> >
> > Ben asks me to test the restart feature that was failing before... I
> > am wondering if its OK to do svn up and then rebuild vdsk? I do not
> > want to break things... If its OK - should I do it in ~nefedova/vdsk
> > (I assume)?
> >
> > Nika
> >
> > On Jun 19, 2007, at 4:31 PM, Yong Zhao wrote:
> >
> > > did you make sure that your path is set correctly? do a
> > >
> > > which swift
> > >
> > > On Tue, 19 Jun 2007, Veronika Nefedova wrote:
> > >
> > >> Yong,
> > >>
> > >> Any idea what could've caused it to fail:
> > >>
> > >> nefedova at viper:~/alamines> cat MolDyn-244-ctsmk1lnf2qa1.log
> > >> 2007-06-19 16:11:19,256 INFO Loader MolDyn-244.dtm: source file is
> > >> new. Recompiling.
> > >> 2007-06-19 16:12:08,346 DEBUG Loader Detailed exception:
> > >> java.lang.RuntimeException: Failed to convert .xml to .kml for
> > >> MolDyn-244.dtm
> > >> at org.griphyn.vdl.karajan.Loader.compile(Loader.java:209)
> > >> at org.griphyn.vdl.karajan.Loader.main(Loader.java:108)
> > >> Caused by: java.util.NoSuchElementException: no such attribute: nil
> > >> in template context [call_arg]
> > >> at org.antlr.stringtemplate.StringTemplate.rawSetAttribute
> > >> (StringTemplate.java:643)
> > >> at org.antlr.stringtemplate.StringTemplate.setAttribute
> > >> (StringTemplate.java:539)
> > >> at org.griphyn.vdl.engine.Karajan.setExprOrValue
> > >> (Karajan.java:663)
> > >> at org.griphyn.vdl.engine.Karajan.setExprOrValue
> > >> (Karajan.java:638)
> > >> at org.griphyn.vdl.engine.Karajan.actualParameter
> > >> (Karajan.java:458)
> > >> at org.griphyn.vdl.engine.Karajan.call(Karajan.java:351)
> > >> at org.griphyn.vdl.engine.Karajan.statements(Karajan.java:
> > >> 304)
> > >> at org.griphyn.vdl.engine.Karajan.program(Karajan.java:117)
> > >> at org.griphyn.vdl.engine.Karajan.main(Karajan.java:71)
> > >> at org.griphyn.vdl.karajan.Loader.compile(Loader.java:199)
> > >> ... 1 more
> > >> nefedova at viper:~/alamines>
> > >>
> > >>
> > >>
> > >> The dtm file is generated by a script. The same script that generated
> > >> the files for 1,20 and 100 molecules. Not sure why 244 is different.
> > >> Everything is in my alamines dir on viper in home dir...
> > >>
> > >> Nika
> > >>
> > >> On Jun 19, 2007, at 4:00 PM, Yong Zhao wrote:
> > >>
> > >>> Everything is configured in Nika's directory:
> > >>> ~nefedova/vdsk
> > >>>
> > >>> Just point VDS_HOME or SWIFT_HOME to /home/nefedova/vdsk, and the
> > >>> rest
> > >>> should be correctly configured in the etc directory.
> > >>>
> > >>> Yong.
> > >>>
> > >>> On Tue, 19 Jun 2007, Ioan Raicu wrote:
> > >>>
> > >>>> Yong, you are the one who ran the Swift workflow... can you make
> > >>>> sure
> > >>>> Nika has everything updated, or can you invoke the command form
> > >>>> your
> > >>>> environment?
> > >>>>
> > >>>> I have restarted Falkon and set it to 18 hours for 100 nodes (200
> > >>>> workers).... its all up and running... there is a 2 hour idle
> > >>>> time, so
> > >>>> make sure to start the workflow in the next 2 hours so we don't
> > >>>> loose
> > >>>> the allocation.
> > >>>>
> > >>>> Falkon is in the same place as last night, tg-viz-login1 on 50001!
> > >>>>
> > >>>> Ioan
> > >>>>
> > >>>> Veronika Nefedova wrote:
> > >>>>> Ok, I have the file ready. What workdir should I specify for TG
> > >>>>> UC ?
> > >>>>>
> > >>>>> Nika
> > >>>>>
> > >>>>> On Jun 19, 2007, at 2:31 PM, Ioan Raicu wrote:
> > >>>>>
> > >>>>>> Hi guys,
> > >>>>>> I need to go eat some lunch.... I'll be back in 30 min... but
> > >>>>>> then
> > >>>>>> I'll only be online until 4PM... so can you please look over that
> > >>>>>> email, and send it back to me soon? Also, let's decide what
> > >>>>>> to do
> > >>>>>> about the next run, is 244 short mol run OK? Nika, can you prep
> > >>>>>> the
> > >>>>>> input data for this? ANL seems almost idle, only 4 nodes are in
> > >>>>>> use,
> > >>>>>> so we could easily et another 200 processors like last night :)
> > >>>>>>
> > >>>>>> Ioan
> > >>>>>>
> > >>>>>> --
> > >>>>>> ============================================
> > >>>>>> Ioan Raicu
> > >>>>>> Ph.D. Student
> > >>>>>> ============================================
> > >>>>>> Distributed Systems Laboratory
> > >>>>>> Computer Science Department
> > >>>>>> University of Chicago
> > >>>>>> 1100 E. 58th Street, Ryerson Hall
> > >>>>>> Chicago, IL 60637
> > >>>>>> ============================================
> > >>>>>> Email: iraicu at cs.uchicago.edu
> > >>>>>> Web: http://www.cs.uchicago.edu/~iraicu
> > >>>>>> http://dsl.cs.uchicago.edu/
> > >>>>>> ============================================
> > >>>>>> ============================================
> > >>>>>>
> > >>>>>
> > >>>>>
> > >>>>
> > >>>> --
> > >>>> ============================================
> > >>>> Ioan Raicu
> > >>>> Ph.D. Student
> > >>>> ============================================
> > >>>> Distributed Systems Laboratory
> > >>>> Computer Science Department
> > >>>> University of Chicago
> > >>>> 1100 E. 58th Street, Ryerson Hall
> > >>>> Chicago, IL 60637
> > >>>> ============================================
> > >>>> Email: iraicu at cs.uchicago.edu
> > >>>> Web: http://www.cs.uchicago.edu/~iraicu
> > >>>> http://dsl.cs.uchicago.edu/
> > >>>> ============================================
> > >>>> ============================================
> > >>>>
> > >>>>
> > >>>
> > >>
> > >>
> > >
> >
> >
>
>
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