[Swift-commit] r8404 - SwiftApps/subjobs/namd

[ketan at ci.uchicago.edu]

Author: ketan
Date: 2015-03-19 17:06:44 -0500 (Thu, 19 Mar 2015)
New Revision: 8404

Added:
   SwiftApps/subjobs/namd/cetus.conf
   SwiftApps/subjobs/namd/mira.conf
   SwiftApps/subjobs/namd/runcetus.sh
Modified:
   SwiftApps/subjobs/namd/runmira.sh
Log:
namd 

Added: SwiftApps/subjobs/namd/cetus.conf
===================================================================
--- SwiftApps/subjobs/namd/cetus.conf	                        (rev 0)
+++ SwiftApps/subjobs/namd/cetus.conf	2015-03-19 22:06:44 UTC (rev 8404)
@@ -0,0 +1,36 @@
+sites : cluster
+site.cluster {
+    execution {
+        type: "coaster"
+        URL: "localhost"
+        jobManager: "local:cobalt"
+        options {
+            maxNodesPerJob: 32
+            maxJobs: 1
+            tasksPerNode: 2
+            # Option ignored: globus:mode = script
+            #workerLoggingLevel = "DEBUG"
+            nodeGranularity: 32
+            maxJobTime = "00:60:00"
+        }
+    }
+    filesystem {
+        type: "local"
+        URL: "localhost"
+    }
+    staging : direct
+    workDirectory: "/home/ketan/swiftwork"
+    maxParallelTasks: 30
+    initialParallelTasks: 29
+    app.bgsh {
+        executable: "/home/ketan/SwiftApps/subjobs/bg.sh"
+        maxWallTime: "00:04:00"
+        env.SUBBLOCK_SIZE="16"
+    }
+}
+
+executionRetries: 0
+keepSiteDir: true
+providerStagingPinSwiftFiles: false
+alwaysTransferWrapperLog: true
+

Added: SwiftApps/subjobs/namd/mira.conf
===================================================================
--- SwiftApps/subjobs/namd/mira.conf	                        (rev 0)
+++ SwiftApps/subjobs/namd/mira.conf	2015-03-19 22:06:44 UTC (rev 8404)
@@ -0,0 +1,34 @@
+sites : cluster
+site.cluster {
+    execution {
+        type: "coaster"
+        URL: "localhost"
+        jobManager: "local:cobalt"
+        options {
+            maxNodesPerJob: 512
+            maxJobs: 1
+            tasksPerNode: 64
+            nodeGranularity: 512
+            maxJobTime = "00:05:00"
+        }
+    }
+    filesystem {
+        type: "local"
+        URL: "localhost"
+    }
+    staging : direct
+    workDirectory: "/home/ketan/swiftwork"
+    maxParallelTasks: 70
+    initialParallelTasks: 69
+    app.bgsh {
+        executable: "/home/ketan/SwiftApps/subjobs/bg.sh"
+        maxWallTime: "03:00:00"
+        env.SUBBLOCK_SIZE="8"
+    }
+}
+
+executionRetries: 0
+keepSiteDir: true
+providerStagingPinSwiftFiles: false
+alwaysTransferWrapperLog: true
+

Added: SwiftApps/subjobs/namd/runcetus.sh
===================================================================
--- SwiftApps/subjobs/namd/runcetus.sh	                        (rev 0)
+++ SwiftApps/subjobs/namd/runcetus.sh	2015-03-19 22:06:44 UTC (rev 8404)
@@ -0,0 +1,7 @@
+#! /bin/sh
+
+#/home/ketan/swift-0.95/cog/modules/swift/dist/swift-svn/bin/swift -sites.file cobalt.xml -config cf -tc.file apps namd.swift 
+/home/ketan/swift-k/dist/swift-svn/bin/swift -config cetus.conf -reducedLogging -minimalLogging namd.swift
+
+#A testblock run
+#qsub -A ATPESC2013 -n 32 -t 5 -q low --mode c16 --mode script testblock.sh # --disable_preboot


Property changes on: SwiftApps/subjobs/namd/runcetus.sh
___________________________________________________________________
Added: svn:executable
   + *

Modified: SwiftApps/subjobs/namd/runmira.sh
===================================================================
--- SwiftApps/subjobs/namd/runmira.sh	2015-03-19 22:06:03 UTC (rev 8403)
+++ SwiftApps/subjobs/namd/runmira.sh	2015-03-19 22:06:44 UTC (rev 8404)
@@ -1,10 +1,7 @@
 #! /bin/sh
 
-#Old method
-#qsub -A ATPESC2014 -n 512 -t 15 --mode script runswift_script.sh -config cf -tc.file apps -sites.file localcoast.xml "$@"
+#/home/ketan/swift-0.95/cog/modules/swift/dist/swift-svn/bin/swift -sites.file cobalt.xml -config cf -tc.file apps namd.swift 
+/home/ketan/swift-k/dist/swift-svn/bin/swift -config mira.conf -reducedLogging -minimalLogging namd.swift
 
-#New method
-/home/ketan/swift-0.95/cog/modules/swift/dist/swift-svn/bin/swift -sites.file cobalt.xml -config cf -tc.file apps namd.swift 
-
 #A testblock run
 #qsub -A ATPESC2013 -n 32 -t 5 -q low --mode c16 --mode script testblock.sh # --disable_preboot