[Swift-commit] r8389 - in www/papers: . pdfs

wozniak at ci.uchicago.edu wozniak at ci.uchicago.edu
Thu Mar 5 14:27:38 CST 2015


Author: wozniak
Date: 2015-03-05 14:27:38 -0600 (Thu, 05 Mar 2015)
New Revision: 8389

Added:
   www/papers/pdfs/Swift_MPI-IO_2014.pdf
   www/papers/pdfs/Swift_NAMD_2014.pdf
Modified:
   www/papers/index.php
Log:
New papers


Modified: www/papers/index.php
===================================================================
--- www/papers/index.php	2015-03-05 19:59:49 UTC (rev 8388)
+++ www/papers/index.php	2015-03-05 20:27:38 UTC (rev 8389)
@@ -30,7 +30,7 @@
 	<!-- header -->
 	<?php require('../inc/header2.php') ?>
 	<!-- end header -->
-<div class="grid_12 page-header">				
+<div class="grid_12 page-header">
 	<h1>Papers</h1>
 </div>
 <div class="clear"></div>
@@ -39,7 +39,7 @@
  <div class="grid_9">
 	<h3>Swift Language and Runtime Technology</h3>
 
-<!-- TEMPLATE --> 
+<!-- TEMPLATE -->
 <!--
 <div class="publication">
 	<span class="authors"></span>
@@ -50,7 +50,32 @@
 </div>
 -->
 
+
 <div class="publication">
+	<span class="authors">Justin M. Wozniak, Hemant Sharma,
+	Timothy G. Armstrong, Michael Wilde, Jonathan D. Almer, Ian
+	T. Foster </span>
+        <span class="title">Big data staging with MPI-IO for
+        interactive X-ray science</span>
+        <span class="source">Proc. IEEE/ACM Symposium on Big Data Computing
+        </span>
+        <span class="date">2014.</span>
+        [ <a href="pdfs/Swift_MPI-IO_2014.pdf">pdf</a> ]
+</div>
+
+<div class="publication">
+	<span class="authors">James C. Phillips, John E. Stone, Kirby
+	L. Vandivort, Timothy G. Armstrong, Justin M. Wozniak, Michael
+	Wilde, Klaus Schulten</span>
+        <span class="title">Petascale Tcl with NAMD, VMD, and Swift/T</span>
+        <span class="source">Proc. Workshop for High Performance
+        Technical Computing in Dynamic Languages at SC, 2014.
+        </span>
+        <span class="date">2014.</span>
+        [ <a href="pdfs/Swift_NAMD_2014.pdf">pdf</a> ]
+</div>
+
+<div class="publication">
 	<span class="authors">Justin M. Wozniak, Michael Wilde, Ian T. Foster</span>
         <span class="title">Language features for scalable distributed-memory dataflow computing </span>
 	<span class="source">Proc Data-flow Execution Models for
@@ -211,7 +236,7 @@
 	<span class="title">Parallel Scripting for Applications at the Petascale and Beyond</span>
 	<span class="source">Computer, Vol. 42, No. 11</span>
 	<span class="date">2009.</span>
-	[ <a href="pdfs/SwiftParallelScripting.pdf">pdf</a> ] 
+	[ <a href="pdfs/SwiftParallelScripting.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -219,7 +244,7 @@
 	<span class="title">Swift: Fast, Reliable, Loosely Coupled Parallel Computation</span>
 	<span class="source">IEEE International Workshop on Scientific Workflows</span>
 	<span class="date">2007.</span>
-	[ <a href="pdfs/Swift-SWF07.pdf">pdf</a> ] 
+	[ <a href="pdfs/Swift-SWF07.pdf">pdf</a> ]
 </div>
 
 <p> </p>
@@ -230,7 +255,7 @@
         <span class="title">Design and Implementation of ‘Many Parallel Task’ Hybrid Subsurface Model</span>
         <span class="source">4th Workshop on Many-Task Computing on Grids and Supercomputers</span>
         <span class="date">2011.</span>
-        [ <a href="http://datasys.cs.iit.edu/events/MTAGS11/p03.pdf">pdf</a> ]    
+        [ <a href="http://datasys.cs.iit.edu/events/MTAGS11/p03.pdf">pdf</a> ]
 </div>
 
 
@@ -239,7 +264,7 @@
         <span class="title">Modeling large regions in proteins: Applications to loops, termini, and folding</span>
         <span class="source">Protein Science</span>
         <span class="date">2011.</span>
-        [ <a href="pdfs/767_fta.pdf">pdf</a> ]    
+        [ <a href="pdfs/767_fta.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -255,7 +280,7 @@
         <span class="title">Parallel High-resolution Climate Data Analysis using Swift.</span>
         <span class="source">4th Workshop on Many-Task Computing on Grids and Supercomputers</span>
         <span class="date">2011.</span>
-        [ <a href="pdfs/highresclimatedata.pdf">pdf</a> ]    
+        [ <a href="pdfs/highresclimatedata.pdf">pdf</a> ]
 </div>
 
 
@@ -287,7 +312,7 @@
 	<span class="title">Non-Rigid Registration for Image-Guided Neurosurgery on the TeraGrid: A Case Study </span>
 	<span class="source">College of William and Mary Technical Report</span>
 	<span class="date">2009.</span>
-	[ <a href="http://www.wm.edu/as/computerscience/documents/cstechreports/WM-CS-2009-05.pdf">pdf</a> ] 
+	[ <a href="http://www.wm.edu/as/computerscience/documents/cstechreports/WM-CS-2009-05.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -295,7 +320,7 @@
 	<span class="title">Accelerating Medical Research using the Swift Workflow System</span>
 	<span class="source">Health Grid</span>
 	<span class="date">2007.</span>
-	[ <a href="pdfs/HealthGrid-2007-VDL2Bric.submitted-revised.pdf">pdf</a> ] 
+	[ <a href="pdfs/HealthGrid-2007-VDL2Bric.submitted-revised.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -303,7 +328,7 @@
 	<span class="title">Accelerating solution of a moral hazard problem with Swift</span>
 	<span class="source">e-Social Science</span>
 	<span class="date">2007.</span>
-	[ <a href="pdfs/SwiftForSocialSciences-2007.pdf">pdf</a> ] 
+	[ <a href="pdfs/SwiftForSocialSciences-2007.pdf">pdf</a> ]
 </div>
 
 <h3>Virtual Data Language Applications</h3>
@@ -312,7 +337,7 @@
 	<span class="title">Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data System.</span>
 	<span class="source">2nd IEEE International Conference on eScience and Grid Computing,</span>
 	<span class="date">2006.</span>
-	[ <a href="pdfs/AutomatingClimateScience.pdf">pdf</a> ] 	
+	[ <a href="pdfs/AutomatingClimateScience.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -327,7 +352,7 @@
         <span class="title">Using Multiple Grid Resources for Bioinformatics Applications in GADU.</span>
         <span class="source">IEEE/ACM International Symposium on Cluster Computing and Grid,</span>
         <span class="date">2006.</span>
-        [ <a href="pdfs/GridResourcesForGADU.pdf">pdf</a> ]   
+        [ <a href="pdfs/GridResourcesForGADU.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -335,7 +360,7 @@
         <span class="title">GNARE: An Environment for Grid-Based High-Throughput Genome Analysis.</span>
         <span class="source">Journal of Clinical Monitoring and Computing.</span>
         <span class="date">2005.</span>
-        [ <a href="pdfs/BioGrid2005.pdf">pdf</a> ]   
+        [ <a href="pdfs/BioGrid2005.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -352,7 +377,7 @@
         <span class="title">Virtual Data in CMS Analysis.</span>
         <span class="source">Computing in High Energy and Nuclear Physics,</span>
         <span class="date">2003.</span>
-        [ <a href="pdfs/VirtualDataInCMS.pdf">pdf</a> ]    
+        [ <a href="pdfs/VirtualDataInCMS.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -360,7 +385,7 @@
         <span class="title">Virtual Data in CMS Production.</span>
         <span class="source">Computing in High Energy and Nuclear Physics,</span>
         <span class="date">2003.</span>
-        [ <a href="pdfs/VDS-CMS.pdf">pdf</a> ] 
+        [ <a href="pdfs/VDS-CMS.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -394,7 +419,7 @@
 	<span class="title">Applying the Virtual Data Provenance Model.</span>
 	<span class="source">International Provenance and Annotation Workshop, Chicago, Illinois,</span>
 	<span class="date">2006.</span>
-	[ <a href="pdfs/VirtualDataProvenance.pdf">pdf</a> ] 	
+	[ <a href="pdfs/VirtualDataProvenance.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -402,7 +427,7 @@
 	<span class="title">Kickstarting Remote Applications.</span>
 	<span class="source">2nd International Workshop on Grid Computing Environments,</span>
 	<span class="date">2006.</span>
-	[ <a href="pdfs/Kickstarting2006.pdf">pdf</a> ] 
+	[ <a href="pdfs/Kickstarting2006.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -411,7 +436,7 @@
 	<span class="source">SIGMOD Record 34 (3)</span>
 	<span class="pages">37-43</span>
         <span class="date">2005.</span>
-	[ <a href="pdfs/p37-special-sw-section-6.pdf">pdf</a> ] 	
+	[ <a href="pdfs/p37-special-sw-section-6.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -419,7 +444,7 @@
 	<span class="title">XDTM: XML Data Type and Mapping for Specifying Datasets.</span>
 	<span class="source">European Grid Conference,</span>
 	<span class="date">2005.</span>
-	[ <a href="pdfs/egc05.pdf">pdf</a> ] 	
+	[ <a href="pdfs/egc05.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -427,7 +452,7 @@
 	<span class="title">Grid Middleware Services for Virtual Data Discovery, Composition, and Integration.</span>
 	<span class="source">2nd International Workshop on Middleware for Grid Computing,</span>
 	<span class="date">2004.</span>
-	[ <a href="pdfs/p57-zhao.pdf">pdf</a> ] 	
+	[ <a href="pdfs/p57-zhao.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -444,7 +469,7 @@
 	<span class="title">Chimera: A Virtual Data System for Representing, Querying, and Automating Data Derivation.</span>
 	<span class="source">14th Intl. Conf. on Scientific and Statistical Database Management, Edinburgh, Scotland,</span>
 	<span class="date">2002.</span>
-	[ <a href="pdfs/Chimra2002.pdf">pdf</a> ] 
+	[ <a href="pdfs/Chimra2002.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -460,7 +485,7 @@
 	<span class="source">Concurrency and Computation: Practice and Experience, 18 (6),</span>
 	<span class="pages">595-608.</span>
         <span class="date">2000.</span>
-	[ <a href="pdfs/cpe2000.pdf">pdf</a> ] 
+	[ <a href="pdfs/cpe2000.pdf">pdf</a> ]
 </div>
 
 <p> </p>
@@ -479,7 +504,7 @@
 	<span class="title">The First Provenance Challenge,</span>
 	<span class="source">Concurrency and Computation: Practice and Experience.</span>
 	<span class="date">2008.</span>
-	[ <a href="pdfs/challenge-editorial.pdf">pdf</a> ] 
+	[ <a href="pdfs/challenge-editorial.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -487,7 +512,7 @@
 	<span class="title">Falkon: a Fast and Light-weight tasK executiON framework </span>
 	<span class="source">Supercomputing Conference</span>
 	<span class="date">2007.</span>
-	[ <a href="pdfs/Falkon_SC07_v24.pdf">pdf</a> ] 
+	[ <a href="pdfs/Falkon_SC07_v24.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -504,7 +529,7 @@
 	<span class="title">An Opportunistic Algorithm for Scheduling Workflows on Grids.</span>
 	<span class="source">VECPAR'06, Rio De Janiero,</span>
 	<span class="date">2006.</span>
-	[ <a href="pdfs/OpportunisticAlgoritmForSchedulingWokflows.pdf">pdf</a> ] 
+	[ <a href="pdfs/OpportunisticAlgoritmForSchedulingWokflows.pdf">pdf</a> ]
 </div>
 
 <div class="publication">
@@ -512,7 +537,7 @@
 	<span class="title">A Tool for Prioritizing DAGMan Jobs and Its Evaluation.</span>
 	<span class="source">IEEE International Symposium on High Performance Distributed Computing,</span>
 	<span class="date">2006.</span>
-	[ <a href="pdfs/jogc_03.pdf">pdf</a> ] 	
+	[ <a href="pdfs/jogc_03.pdf">pdf</a> ]
 </div>
 
 	<p> </p>
@@ -522,13 +547,13 @@
   	<?php require('../inc/papers_sidebar.php') ?>
   </div>
   <!-- end .grid_3 -->
-  
+
   <div class="clear"></div>
-				
+
   </div>
 <!-- end .container_12 -->
 <!-- footer -->
-<?php require('../inc/footer2.php') ?> 
+<?php require('../inc/footer2.php') ?>
 <!-- end footer -->
 <script type="text/javascript">
 var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www.");
@@ -542,8 +567,8 @@
 </body>
 </html>
 
-<!-- 
- Local Variables: 
+<!--
+ Local Variables:
  mode: html
  End:
 -->

Added: www/papers/pdfs/Swift_MPI-IO_2014.pdf
===================================================================
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Property changes on: www/papers/pdfs/Swift_MPI-IO_2014.pdf
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Added: svn:mime-type
   + application/octet-stream

Added: www/papers/pdfs/Swift_NAMD_2014.pdf
===================================================================
(Binary files differ)


Property changes on: www/papers/pdfs/Swift_NAMD_2014.pdf
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream




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