[Swift-commit] r7403 - SwiftApps/Blast/v2

[wilde at ci.uchicago.edu]

Author: wilde
Date: 2013-12-10 23:37:51 -0600 (Tue, 10 Dec 2013)
New Revision: 7403

Added:
   SwiftApps/Blast/v2/swift.properties
Modified:
   SwiftApps/Blast/v2/run2.sh
Log:
Change to new 0.95 config conventions.

Modified: SwiftApps/Blast/v2/run2.sh
===================================================================
--- SwiftApps/Blast/v2/run2.sh	2013-12-11 05:11:32 UTC (rev 7402)
+++ SwiftApps/Blast/v2/run2.sh	2013-12-11 05:37:51 UTC (rev 7403)
@@ -1 +1,3 @@
-swift -sites.file sites.local.xml -config cf -tc.file apps blast2.swift
+#swift -sites.file sites.local.xml -config cf -tc.file apps blast2.swift
+
+swift blast2.swift

Added: SwiftApps/Blast/v2/swift.properties
===================================================================
--- SwiftApps/Blast/v2/swift.properties	                        (rev 0)
+++ SwiftApps/Blast/v2/swift.properties	2013-12-11 05:37:51 UTC (rev 7403)
@@ -0,0 +1,27 @@
+site.local {
+   provider=local:local
+   jobsPerNode=1
+   maxWalltime=01:00:00
+   initialScore=10000
+   filesystem=local
+   workdirectory=/scratch/midway/$USER/work
+   jobthrottle=0.1999
+}
+
+site=local
+
+app.local.fastasplitn=/root/parallelblast_2.0.9/fastasplitn
+app.local.formatdb=/root/blast-2.2.26/bin/formatdb
+app.local.blastall=/root/blast-2.2.26/bin/blastall
+app.local.fblastall=/root/blast.svn/v2/fblastall.sh
+app.local.blastmerge=/root/parallelblast_2.0.9/blastmerge
+
+use.provider.staging=true
+use.wrapper.staging=false
+wrapperlog.always.transfer=true
+execution.retries=0
+lazy.errors=false
+provider.staging.pin.swiftfiles=false
+sitedir.keep=true
+#tcp.port.range=50000,51000
+Dtcp.channel.log.io.performance=true