[Swift-commit] r6804 - SwiftApps/Scattering/paintgrid/docs

davidk at ci.uchicago.edu davidk at ci.uchicago.edu
Thu Aug 8 13:18:20 CDT 2013


Author: davidk
Date: 2013-08-08 13:18:19 -0500 (Thu, 08 Aug 2013)
New Revision: 6804

Added:
   SwiftApps/Scattering/paintgrid/docs/tutorial.html
Modified:
   SwiftApps/Scattering/paintgrid/docs/README
   SwiftApps/Scattering/paintgrid/docs/build_docs.sh
Log:
x bit for build_docs.sh
Adding html output
Intro setup material for readme


Modified: SwiftApps/Scattering/paintgrid/docs/README
===================================================================
--- SwiftApps/Scattering/paintgrid/docs/README	2013-08-08 18:08:53 UTC (rev 6803)
+++ SwiftApps/Scattering/paintgrid/docs/README	2013-08-08 18:18:19 UTC (rev 6804)
@@ -1,15 +1,31 @@
-Demo / tutorial application to mimic the needs of the PaintGrid application
-===========================================================================
+Demo / tutorial PaintGrid application
+=====================================
 
-Setup:
+PaintGrid tutorial setup
+------------------------
 
-  $ PATH=/clhome/WILDE/swift/rev/swift-0.94.1/bin:$PATH
+Check out scripts from SVN
+~~~~~~~~~~~~~~~~~~~~~~~~~~
+To checkout the most recent PaintGrid tutorial scripts from SVN, run the following command:
 
-Create a test data file:
+-----
+$ svn co https://svn.ci.uchicago.edu/svn/vdl2/SwiftApps/Scattering/paintgrid
+-----
+This will create a directory called paintgrid which contains all of the scripts mentioned in this document.
 
-  $ dd bs=8M  count=1 if=/dev/zero of=data.0001.tif
-  $ dd bs=800 count=1 if=/dev/zero of=data.0001.tiny
+Run setup
+~~~~~~~~~
+Once the scripts are checked out, run the following commands to perform
+the initial setup.
 
+-----
+$ cd paintgrid          # change to the newly created paintgrid directory
+$ source setup.sh       # Updates PATH and creates a configuration file in $HOME/.swift
+-----
+
+NOTE: If you disconnect from the machine, you will need to re-run source setup.sh.
+
+
 Run the Swift script:
 
   $ mkdir ~/swift


Property changes on: SwiftApps/Scattering/paintgrid/docs/build_docs.sh
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Scattering/paintgrid/docs/tutorial.html
===================================================================
--- SwiftApps/Scattering/paintgrid/docs/tutorial.html	                        (rev 0)
+++ SwiftApps/Scattering/paintgrid/docs/tutorial.html	2013-08-08 18:18:19 UTC (rev 6804)
@@ -0,0 +1,683 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN"
+    "http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en">
+<head>
+<meta http-equiv="Content-Type" content="application/xhtml+xml; charset=UTF-8" />
+<meta name="generator" content="AsciiDoc 8.6.4" />
+<title>Demo / tutorial PaintGrid application</title>
+<style type="text/css">
+/* Sans-serif font. */
+h1, h2, h3, h4, h5, h6,
+div.title, caption.title,
+thead, p.table.header,
+div#toctitle,
+span#author, span#revnumber, span#revdate, span#revremark,
+div#footer {
+  font-family: Arial,Helvetica,sans-serif;
+}
+
+/* Serif font. */
+div.sectionbody {
+  font-family: Georgia,"Times New Roman",Times,serif;
+}
+
+/* Monospace font. */
+tt {
+  font-size: inherit;
+}
+
+body {
+  margin: 1em 5% 1em 5%;
+}
+
+a {
+  color: blue;
+  text-decoration: underline;
+}
+a:visited {
+  color: fuchsia;
+}
+
+em {
+  font-style: italic;
+  color: navy;
+}
+
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+  font-weight: bold;
+  color: #083194;
+}
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+  font-size: inherit;
+  color: navy;
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+  color: #527bbd;
+  margin-top: 1.2em;
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+
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+  margin: 0;
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+  font-weight: bold;
+  font-size: 1.1em;
+}
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+}
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+  margin-top: 4.0em;
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+div.imageblock div.content { padding-left: 0; }
+span.image img { border-style: none; }
+a.image:visited { color: white; }
+
+dl {
+  margin-top: 0.8em;
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+}
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+}
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+  list-style-type: lower-roman;
+}
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+  list-style-type: upper-roman;
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+
+div.compact ul, div.compact ol,
+div.compact p, div.compact p,
+div.compact div, div.compact div {
+  margin-top: 0.1em;
+  margin-bottom: 0.1em;
+}
+
+div.tableblock > table {
+  border: 3px solid #527bbd;
+}
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+  font-weight: bold;
+  color: #527bbd;
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+  font-weight: bold;
+}
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+  white-space: pre;
+}
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+  margin-top: 0;
+}
+/* Because the table frame attribute is overriden by CSS in most browsers. */
+div.tableblock > table[frame="void"] {
+  border-style: none;
+}
+div.tableblock > table[frame="hsides"] {
+  border-left-style: none;
+  border-right-style: none;
+}
+div.tableblock > table[frame="vsides"] {
+  border-top-style: none;
+  border-bottom-style: none;
+}
+
+
+div.hdlist {
+  margin-top: 0.8em;
+  margin-bottom: 0.8em;
+}
+div.hdlist tr {
+  padding-bottom: 15px;
+}
+dt.hdlist1.strong, td.hdlist1.strong {
+  font-weight: bold;
+}
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+  vertical-align: top;
+  font-style: normal;
+  padding-right: 0.8em;
+  color: navy;
+}
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+  vertical-align: top;
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+div.hdlist.compact tr {
+  margin: 0;
+  padding-bottom: 0;
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+
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+  background: yellow;
+}
+
+.footnote, .footnoteref {
+  font-size: 0.8em;
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+
+span.footnote, span.footnoteref {
+  vertical-align: super;
+}
+
+#footnotes {
+  margin: 20px 0 20px 0;
+  padding: 7px 0 0 0;
+}
+
+#footnotes div.footnote {
+  margin: 0 0 5px 0;
+}
+
+#footnotes hr {
+  border: none;
+  border-top: 1px solid silver;
+  height: 1px;
+  text-align: left;
+  margin-left: 0;
+  width: 20%;
+  min-width: 100px;
+}
+
+div.colist td {
+  padding-right: 0.5em;
+  padding-bottom: 0.3em;
+  vertical-align: top;
+}
+div.colist td img {
+  margin-top: 0.3em;
+}
+
+ at media print {
+  div#footer-badges { display: none; }
+}
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+  margin-bottom: 2.5em;
+}
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+  font-weight: bold;
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+
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+<script type="text/javascript">
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+var asciidoc = {  // Namespace.
+
+/////////////////////////////////////////////////////////////////////
+// Table Of Contents generator
+/////////////////////////////////////////////////////////////////////
+
+/* Author: Mihai Bazon, September 2002
+ * http://students.infoiasi.ro/~mishoo
+ *
+ * Table Of Content generator
+ * Version: 0.4
+ *
+ * Feel free to use this script under the terms of the GNU General Public
+ * License, as long as you do not remove or alter this notice.
+ */
+
+ /* modified by Troy D. Hanson, September 2006. License: GPL */
+ /* modified by Stuart Rackham, 2006, 2009. License: GPL */
+
+// toclevels = 1..4.
+toc: function (toclevels) {
+
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+
+  function tocEntries(el, toclevels) {
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+    // Function that scans the DOM tree for header elements (the DOM2
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+},
+
+
+/////////////////////////////////////////////////////////////////////
+// Footnotes generator
+/////////////////////////////////////////////////////////////////////
+
+/* Based on footnote generation code from:
+ * http://www.brandspankingnew.net/archive/2005/07/format_footnote.html
+ */
+
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+}
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+}
+/*]]>*/
+</script>
+</head>
+<body class="article" style="max-width:800px">
+<div id="header">
+<h1>Demo / tutorial PaintGrid application</h1>
+<div id="toc">
+  <div id="toctitle">Table of Contents</div>
+  <noscript><p><b>JavaScript must be enabled in your browser to display the table of contents.</b></p></noscript>
+</div>
+</div>
+<div id="content">
+<div class="sect1">
+<h2 id="_paintgrid_tutorial_setup">PaintGrid tutorial setup</h2>
+<div class="sectionbody">
+<div class="sect2">
+<h3 id="_check_out_scripts_from_svn">Check out scripts from SVN</h3>
+<div class="paragraph"><p>To checkout the most recent PaintGrid tutorial scripts from SVN, run the following command:</p></div>
+<div class="listingblock">
+<div class="content">
+<pre><tt>$ svn co https://svn.ci.uchicago.edu/svn/vdl2/SwiftApps/Scattering/paintgrid</tt></pre>
+</div></div>
+<div class="paragraph"><p>This will create a directory called paintgrid which contains all of the scripts mentioned in this document.</p></div>
+</div>
+<div class="sect2">
+<h3 id="_run_setup">Run setup</h3>
+<div class="paragraph"><p>Once the scripts are checked out, run the following commands to perform
+the initial setup.</p></div>
+<div class="listingblock">
+<div class="content">
+<pre><tt>$ cd paintgrid          # change to the newly created paintgrid directory
+$ source setup.sh       # Updates PATH and creates a configuration file in $HOME/.swift</tt></pre>
+</div></div>
+<div class="admonitionblock">
+<table><tr>
+<td class="icon">
+<div class="title">Note</div>
+</td>
+<td class="content">If you disconnect from the machine, you will need to re-run source setup.sh.</td>
+</tr></table>
+</div>
+<div class="paragraph"><p>Run the Swift script:</p></div>
+<div class="literalblock">
+<div class="content">
+<pre><tt>$ mkdir ~/swift
+$ cp swift.properties ~/.swift</tt></pre>
+</div></div>
+<div class="literalblock">
+<div class="content">
+<pre><tt>$ swift -tc.file apps -sites.file amd.xml paintgrid.swift -runDir=$PWD -params=genpoints.params -image=data.0001.tiny</tt></pre>
+</div></div>
+<div class="paragraph"><p>TODO:</p></div>
+<div class="paragraph"><p>Execution scenarios:</p></div>
+<div class="literalblock">
+<div class="content">
+<pre><tt>run.local.sh</tt></pre>
+</div></div>
+<div class="literalblock">
+<div class="content">
+<pre><tt>run.beagle.sh</tt></pre>
+</div></div>
+<div class="literalblock">
+<div class="content">
+<pre><tt>run.midway.sh</tt></pre>
+</div></div>
+<div class="literalblock">
+<div class="content">
+<pre><tt>run.midway+beagle.sh</tt></pre>
+</div></div>
+<div class="literalblock">
+<div class="content">
+<pre><tt>run.blues.sh</tt></pre>
+</div></div>
+<div class="literalblock">
+<div class="content">
+<pre><tt>run.orthros.sh</tt></pre>
+</div></div>
+<div class="paragraph"><p>Data transfer models:</p></div>
+<div class="ulist"><ul>
+<li>
+<p>
+provider staging without caching
+</p>
+</li>
+<li>
+<p>
+provider staging with ad-hoc caching of big common files
+</p>
+</li>
+<li>
+<p>
+gridftp staging
+</p>
+</li>
+<li>
+<p>
+ssh (scp) staging
+</p>
+</li>
+<li>
+<p>
+wrapper staging with scp and caching
+</p>
+</li>
+</ul></div>
+</div>
+</div>
+</div>
+</div>
+<div id="footnotes"><hr /></div>
+<div id="footer">
+<div id="footer-text">
+Last updated 2013-08-08 13:12:10 CDT
+</div>
+</div>
+</body>
+</html>




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