[Swift-commit] r5963 - SwiftApps/ParVis/HiRAMTools/JUNK

[wilde at ci.uchicago.edu]

Author: wilde
Date: 2012-10-10 09:47:34 -0500 (Wed, 10 Oct 2012)
New Revision: 5963

Added:
   SwiftApps/ParVis/HiRAMTools/JUNK/combine.bgp.sh
   SwiftApps/ParVis/HiRAMTools/JUNK/combine.imp.sh
   SwiftApps/ParVis/HiRAMTools/JUNK/combine2.swift
   SwiftApps/ParVis/HiRAMTools/JUNK/ncfiles
   SwiftApps/ParVis/HiRAMTools/JUNK/t.out
   SwiftApps/ParVis/HiRAMTools/JUNK/t2.out
   SwiftApps/ParVis/HiRAMTools/JUNK/t3.out
   SwiftApps/ParVis/HiRAMTools/JUNK/t4.out
   SwiftApps/ParVis/HiRAMTools/JUNK/tofix
Modified:
   SwiftApps/ParVis/HiRAMTools/JUNK/combine.orig.sh
Log:
Saved copies of junk from July 2012 work.

Added: SwiftApps/ParVis/HiRAMTools/JUNK/combine.bgp.sh
===================================================================
--- SwiftApps/ParVis/HiRAMTools/JUNK/combine.bgp.sh	                        (rev 0)
+++ SwiftApps/ParVis/HiRAMTools/JUNK/combine.bgp.sh	2012-10-10 14:47:34 UTC (rev 5963)
@@ -0,0 +1,68 @@
+#! /bin/bash
+
+set -x
+
+outdir=$1
+inpattern=$2
+date=$(basename $(dirname $inpattern))
+basepattern=$(basename $inpattern)
+
+infiles="$2*"
+
+mppncombine=/home/ckerr/bin/fms/tools/x86_64/bin/mppnccombine.exe
+mppncombine=/home/ckerr/bin/fms/tools/ppc64/bin/mppnccombine.exe
+
+mode=scratch # default
+
+scratch=/dev/shm
+
+badnodes="loginx"
+thisnode=$(hostname)
+if echo $badnodes | grep -q $thisnode ; then
+  echo Running on node $thisnode - is in badnode list $badnodes. Will run in direct mode.
+  mode=direct
+else
+  # Try to make a temporary work dir under /scratch - this can fail on bad nodes
+  mkdir -p $scratch/$USER
+  tmp=$(mktemp -d $scratch/$USER/combine_XXXXXX)
+  if [ $? != 0 ]; then
+    echo Failed to create tmp dir on $scratch/$USER. Will run in direct mode.
+    mode=direct
+  fi
+fi
+
+mode=direct
+
+set -o errexit # Set this after we know if tmp dir was created ok
+
+export PATH=/soft/apps/nco-3.9.2/bin:$PATH
+export LD_LIBRARY_PATH=/soft/apps/intel-fc-11.0.074/lib/intel64:/soft/apps/intel-cc-11.0.074/lib/intel64:/soft/apps/netcdf-3.6.3/lib:/usr/lib:/usr/X11R6/lib:/usr/local/lib
+  
+if [ $mode = scratch ]; then
+  
+  cd $tmp
+  
+  for f in $infiles; do
+    dd if=$f of=$(basename $f) bs=4M
+  done
+  
+  # Add nco tools to PATH and Intel compiler v11 libs to LD_LIBRARY_PATH # FIXME: this is precautionary and can likely be removed.
+  
+  # FIXME: ^^^ end precaution
+  
+  $mppncombine out.nc ${basepattern}*
+  
+  mkdir -p $outdir/$date
+  dd if=out.nc of=$outdir/$date/$basepattern.trans bs=4M
+  mv $outdir/$date/$basepattern.trans $outdir/$date/$basepattern
+  
+  cd ..
+  rm -rf $tmp
+  
+else # $mode = direct
+
+  mkdir -p $outdir/$date
+  $mppncombine $outdir/$date/$basepattern $infiles
+  
+fi
+


Property changes on: SwiftApps/ParVis/HiRAMTools/JUNK/combine.bgp.sh
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/ParVis/HiRAMTools/JUNK/combine.imp.sh
===================================================================
--- SwiftApps/ParVis/HiRAMTools/JUNK/combine.imp.sh	                        (rev 0)
+++ SwiftApps/ParVis/HiRAMTools/JUNK/combine.imp.sh	2012-10-10 14:47:34 UTC (rev 5963)
@@ -0,0 +1,62 @@
+#! /bin/bash
+
+set -x
+
+outdir=$1
+inpattern=$2
+date=$(basename $(dirname $inpattern))
+basepattern=$(basename $inpattern)
+
+infiles="$2*"
+
+mppncombine=/home/ckerr/bin/fms/tools/x86_64/bin/mppnccombine.exe
+mode=scratch # default
+
+badnodes="loginx"
+thisnode=$(hostname)
+if echo $badnodes | grep -q $thisnode ; then
+  echo Running on node $thisnode - is in badnode list $badnodes. Will run in direct mode.
+  mode=direct
+else
+  # Try to make a temporary work dir under /scratch - this can fail on bad nodes
+  mkdir -p /scratch/$USER
+  tmp=$(mktemp -d /scratch/$USER/combine_XXXXXX)
+  if [ $? != 0 ]; then
+    echo Failed to create tmp dir on /scratch/$USER. Will run in direct mode.
+    mode=direct
+  fi
+fi
+
+set -o errexit # Set this after we know if tmp dir was created ok
+
+export PATH=/soft/apps/nco-3.9.2/bin:$PATH
+export LD_LIBRARY_PATH=/soft/apps/intel-fc-11.0.074/lib/intel64:/soft/apps/intel-cc-11.0.074/lib/intel64:/soft/apps/netcdf-3.6.3/lib:/usr/lib:/usr/X11R6/lib:/usr/local/lib
+  
+if [ $mode = scratch ]; then
+  
+  cd $tmp
+  
+  for f in $infiles; do
+    dd if=$f of=$(basename $f) bs=4M
+  done
+  
+  # Add nco tools to PATH and Intel compiler v11 libs to LD_LIBRARY_PATH # FIXME: this is precautionary and can likely be removed.
+  
+  # FIXME: ^^^ end precaution
+  
+  $mppncombine out.nc ${basepattern}*
+  
+  mkdir -p $outdir/$date
+  dd if=out.nc of=$outdir/$date/$basepattern.trans bs=4M
+  mv $outdir/$date/$basepattern.trans $outdir/$date/$basepattern
+  
+  cd ..
+  rm -rf $tmp
+  
+else # $mode = direct
+
+  mkdir -p $outdir/$date
+  $mppncombine $outdir/$date/$basepattern $infiles
+  
+fi
+


Property changes on: SwiftApps/ParVis/HiRAMTools/JUNK/combine.imp.sh
___________________________________________________________________
Added: svn:executable
   + *

Modified: SwiftApps/ParVis/HiRAMTools/JUNK/combine.orig.sh
===================================================================
--- SwiftApps/ParVis/HiRAMTools/JUNK/combine.orig.sh	2012-10-10 14:46:48 UTC (rev 5962)
+++ SwiftApps/ParVis/HiRAMTools/JUNK/combine.orig.sh	2012-10-10 14:47:34 UTC (rev 5963)
@@ -1,28 +1,52 @@
 #! /bin/bash
 
-set -x 
+set -o errexit
+set -x
 
-mkdir -p /scratch/wilde
-tmp=$(mktemp -d /scratch/wilde/combine_XXXX)
-cd $tmp
-
 outdir=$1
 inpattern=$2
 date=$(basename $(dirname $inpattern))
 basepattern=$(basename $inpattern)
 
 infiles="$2*"
-for f in $infiles; do
-  dd if=$f of=$(basename $f) bs=4M
-done
 
-/home/ckerr/bin/fms/tools/x86_64/bin/mppnccombine.exe out.nc ${basepattern}*
+mode=direct
 
-mkdir -p $outdir/$date
-dd if=out.nc of=$outdir/$date/$basepattern bs=4M
+if [ $mode = scratch ]; then
 
-cd ..
-rm -rf $tmp
+  mkdir -p /scratch/$USER
+  
+  tmp=$(mktemp -d /scratch/$USER/combine_XXXXXX)
+  
+  cd $tmp
+  
+  for f in $infiles; do
+    dd if=$f of=$(basename $f) bs=4M
+  done
+  
+  # Add nco tools to PATH and Intel compiler v11 libs to LD_LIBRARY_PATH # FIXME: this is precautionary and can likely be removed.
+  
+  export PATH=/soft/apps/nco-3.9.2/bin:$PATH
+  export LD_LIBRARY_PATH=/soft/apps/intel-fc-11.0.074/lib/intel64:/soft/apps/intel-cc-11.0.074/lib/intel64:/soft/apps/netcdf-3.6.3/lib:/usr/lib:/usr/X11R6/lib:/usr/local/lib
+  
+  # FIXME: ^^^ end precaution
+  
+  /home/ckerr/bin/fms/tools/x86_64/bin/mppnccombine.exe out.nc ${basepattern}*
+  
+  mkdir -p $outdir/$date
+  dd if=out.nc of=$outdir/$date/$basepattern.trans bs=4M
+  mv $outdir/$date/$basepattern.trans $outdir/$date/$basepattern
+  
+  cd ..
+  rm -rf $tmp
+  
+else # $mode = direct
 
+  export PATH=/soft/apps/nco-3.9.2/bin:$PATH
+  export LD_LIBRARY_PATH=/soft/apps/intel-fc-11.0.074/lib/intel64:/soft/apps/intel-cc-11.0.074/lib/intel64:/soft/apps/netcdf-3.6.3/lib:/usr/lib:/usr/X11R6/lib:/usr/local/lib
+  
+  mkdir -p $outdir/$date
+  /home/ckerr/bin/fms/tools/x86_64/bin/mppnccombine.exe $outdir/$date/$basepattern $infiles
+  
+fi
 
-

Added: SwiftApps/ParVis/HiRAMTools/JUNK/combine2.swift
===================================================================
--- SwiftApps/ParVis/HiRAMTools/JUNK/combine2.swift	                        (rev 0)
+++ SwiftApps/ParVis/HiRAMTools/JUNK/combine2.swift	2012-10-10 14:47:34 UTC (rev 5963)
@@ -0,0 +1,18 @@
+
+type file;
+
+string rundir=@arg("rundir","NO-OUTDIR-SPECIFIED");
+string groupfile=@arg("groupfile","groups");
+string realizatoinfile=@arg("ralizationsfile","realizations");
+
+app combine (string dir, string pattern)
+{
+  combine dir pattern;
+}
+
+string group[] = readData(groupfile);
+string reals[] = readData(realizationFile);
+
+foreach g in group {
+  combine(rundir,g);
+}

Added: SwiftApps/ParVis/HiRAMTools/JUNK/ncfiles
===================================================================
--- SwiftApps/ParVis/HiRAMTools/JUNK/ncfiles	                        (rev 0)
+++ SwiftApps/ParVis/HiRAMTools/JUNK/ncfiles	2012-10-10 14:47:34 UTC (rev 5963)
@@ -0,0 +1,370 @@
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+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_4xdaily.tile2.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_4xdaily.tile2.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/ice_month.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/ice_month.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_4xdaily.tile5.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_4xdaily.tile5.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_8xdaily_instant.tile1.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_8xdaily_instant.tile1.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_8xdaily_instant.tile2.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_8xdaily_instant.tile2.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/grid_spec.tile2.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/grid_spec.tile2.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_month.tile6.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_month.tile6.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_8xdaily_instant.tile5.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_8xdaily_instant.tile5.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_8xdaily_instant.tile4.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_8xdaily_instant.tile4.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/grid_spec.tile6.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/grid_spec.tile6.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_8xdaily.tile1.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_8xdaily.tile1.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_8xdaily_instant.tile6.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_8xdaily_instant.tile6.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/grid_spec.tile4.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/grid_spec.tile4.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_4xdaily.tile6.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_4xdaily.tile6.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_4xdaily.tile4.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_4xdaily.tile4.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_8xdaily.tile6.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_8xdaily.tile6.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_month.tile4.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_month.tile4.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_4xdaily.tile1.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_4xdaily.tile1.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_8xdaily.tile5.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_8xdaily.tile5.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_8xdaily.tile3.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_8xdaily.tile3.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/grid_spec.tile5.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/grid_spec.tile5.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/grid_spec.tile1.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/grid_spec.tile1.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/grid_spec.tile3.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/grid_spec.tile3.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_8xdaily.tile4.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_8xdaily.tile4.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_8xdaily_instant.tile3.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_8xdaily_instant.tile3.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_month.tile1.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_month.tile1.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_month.tile5.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_month.tile5.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_4xdaily.tile3.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_4xdaily.tile3.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_month.tile2.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_month.tile2.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_daily.tile3.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_daily.tile3.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_daily.tile4.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_daily.tile4.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_daily.tile5.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_daily.tile5.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_daily.tile2.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_daily.tile2.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_daily.tile1.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_daily.tile1.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19900101/atmos_daily.tile6.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19920701/atmos_daily.tile6.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_4xdaily.tile4.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_4xdaily.tile4.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_month.tile3.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_month.tile3.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/grid_spec.tile5.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/grid_spec.tile5.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_8xdaily.tile4.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_8xdaily.tile4.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_month.tile5.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_month.tile5.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_8xdaily_instant.tile6.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_8xdaily_instant.tile6.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_month.tile6.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_month.tile6.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_8xdaily.tile6.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_8xdaily.tile6.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_8xdaily_instant.tile2.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_8xdaily_instant.tile2.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/ice_month.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/ice_month.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_4xdaily.tile5.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_4xdaily.tile5.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_4xdaily.tile3.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_4xdaily.tile3.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_8xdaily.tile1.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_8xdaily.tile1.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_4xdaily.tile6.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_4xdaily.tile6.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_8xdaily_instant.tile5.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_8xdaily_instant.tile5.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_8xdaily_instant.tile1.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_8xdaily_instant.tile1.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_8xdaily.tile2.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_8xdaily.tile2.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_8xdaily_instant.tile3.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_8xdaily_instant.tile3.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/grid_spec.tile4.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/grid_spec.tile4.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/grid_spec.tile2.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/grid_spec.tile2.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_month.tile4.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_month.tile4.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_month.tile2.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_month.tile2.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_8xdaily.tile5.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_8xdaily.tile5.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/grid_spec.tile1.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/grid_spec.tile1.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_4xdaily.tile1.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_4xdaily.tile1.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/grid_spec.tile3.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/grid_spec.tile3.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/grid_spec.tile6.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/grid_spec.tile6.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_month.tile1.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_month.tile1.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_8xdaily.tile3.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_8xdaily.tile3.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_daily.tile3.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_daily.tile3.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_8xdaily_instant.tile4.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_8xdaily_instant.tile4.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_4xdaily.tile2.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_4xdaily.tile2.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_daily.tile5.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_daily.tile5.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_daily.tile1.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_daily.tile1.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_daily.tile2.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_daily.tile2.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_daily.tile4.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_daily.tile4.nc /home/wilde/LZ/tests
+/intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19950101/atmos_daily.tile6.nc /intrepid-fs0/users/lzamboni/persistent/combined/Climo2/run004/19970701/atmos_daily.tile6.nc /home/wilde/LZ/tests

Added: SwiftApps/ParVis/HiRAMTools/JUNK/t.out
===================================================================
--- SwiftApps/ParVis/HiRAMTools/JUNK/t.out	                        (rev 0)
+++ SwiftApps/ParVis/HiRAMTools/JUNK/t.out	2012-10-10 14:47:34 UTC (rev 5963)
@@ -0,0 +1,88 @@
++ outdir=/home/wilde/LZ/HiRAMTools/out
++ inpattern=/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1
++++ dirname /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101
++ date=19500101
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1
++ basepattern=atmos_8xdaily_instant.tile1
++ infiles='/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1*'
++ mppncombine=/home/ckerr/bin/fms/tools/x86_64/bin/mppnccombine.exe
++ mode=scratch
++ badnodes=vs95
+++ hostname
++ thisnode=login1
++ grep -q login1
++ mkdir -p /scratch/wilde
+++ mktemp -d /scratch/wilde/combine_XXXXXX
++ tmp=/scratch/wilde/combine_Z24942
++ '[' 0 '!=' 0 ']'
++ set -o errexit
++ export PATH=/soft/apps/nco-3.9.2/bin:/home/wilde/swift/src/cog/modules/swift/dist/swift-svn/bin:/home/wilde/e/protlib2/bin:/home/wilde/e/ptmap/bin:/bin:/usr/sbin:/etc:/usr/X11R6/bin:/usr/bin:/sbin:/usr/local/bin:/software/common/apps/projects-list/bin:/software/common/adm/softenv/bin:/home/wilde/bin/linux-sles10-x86_64:/home/wilde/bin:.:/soft/apps/darshan/bin:/soft/apps/darshan/bin/default:/usr/lib/mit/bin:/usr/lib/mit/sbin
++ PATH=/soft/apps/nco-3.9.2/bin:/home/wilde/swift/src/cog/modules/swift/dist/swift-svn/bin:/home/wilde/e/protlib2/bin:/home/wilde/e/ptmap/bin:/bin:/usr/sbin:/etc:/usr/X11R6/bin:/usr/bin:/sbin:/usr/local/bin:/software/common/apps/projects-list/bin:/software/common/adm/softenv/bin:/home/wilde/bin/linux-sles10-x86_64:/home/wilde/bin:.:/soft/apps/darshan/bin:/soft/apps/darshan/bin/default:/usr/lib/mit/bin:/usr/lib/mit/sbin
++ export LD_LIBRARY_PATH=/soft/apps/intel-fc-11.0.074/lib/intel64:/soft/apps/intel-cc-11.0.074/lib/intel64:/soft/apps/netcdf-3.6.3/lib:/usr/lib:/usr/X11R6/lib:/usr/local/lib
++ LD_LIBRARY_PATH=/soft/apps/intel-fc-11.0.074/lib/intel64:/soft/apps/intel-cc-11.0.074/lib/intel64:/soft/apps/netcdf-3.6.3/lib:/usr/lib:/usr/X11R6/lib:/usr/local/lib
++ '[' scratch = scratch ']'
++ cd /scratch/wilde/combine_Z24942
++ for f in '$infiles'
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0000
++ dd if=/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0000 of=atmos_8xdaily_instant.tile1.nc.0000 bs=4M
+18+1 records in
+18+1 records out
+78873468 bytes (79 MB) copied, 1.21551 seconds, 64.9 MB/s
++ for f in '$infiles'
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0001
++ dd if=/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0001 of=atmos_8xdaily_instant.tile1.nc.0001 bs=4M
+18+1 records in
+18+1 records out
+78873468 bytes (79 MB) copied, 1.27354 seconds, 61.9 MB/s
++ for f in '$infiles'
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0002
++ dd if=/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0002 of=atmos_8xdaily_instant.tile1.nc.0002 bs=4M
+18+1 records in
+18+1 records out
+78873468 bytes (79 MB) copied, 1.23355 seconds, 63.9 MB/s
++ for f in '$infiles'
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0003
++ dd if=/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0003 of=atmos_8xdaily_instant.tile1.nc.0003 bs=4M
+18+1 records in
+18+1 records out
+78873468 bytes (79 MB) copied, 1.40366 seconds, 56.2 MB/s
++ for f in '$infiles'
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0004
++ dd if=/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0004 of=atmos_8xdaily_instant.tile1.nc.0004 bs=4M
+18+1 records in
+18+1 records out
+78873468 bytes (79 MB) copied, 1.89716 seconds, 41.6 MB/s
++ for f in '$infiles'
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0005
++ dd if=/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0005 of=atmos_8xdaily_instant.tile1.nc.0005 bs=4M
+18+1 records in
+18+1 records out
+78873468 bytes (79 MB) copied, 1.19727 seconds, 65.9 MB/s
++ for f in '$infiles'
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0006
++ dd if=/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0006 of=atmos_8xdaily_instant.tile1.nc.0006 bs=4M
+18+1 records in
+18+1 records out
+78873468 bytes (79 MB) copied, 1.36644 seconds, 57.7 MB/s
++ for f in '$infiles'
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0007
++ dd if=/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0007 of=atmos_8xdaily_instant.tile1.nc.0007 bs=4M
+18+1 records in
+18+1 records out
+78873468 bytes (79 MB) copied, 1.35214 seconds, 58.3 MB/s
++ for f in '$infiles'
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0008
++ dd if=/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0008 of=atmos_8xdaily_instant.tile1.nc.0008 bs=4M
+18+1 records in
+18+1 records out
+78873468 bytes (79 MB) copied, 1.47079 seconds, 53.6 MB/s
++ /home/ckerr/bin/fms/tools/x86_64/bin/mppnccombine.exe out.nc atmos_8xdaily_instant.tile1.nc.0000 atmos_8xdaily_instant.tile1.nc.0001 atmos_8xdaily_instant.tile1.nc.0002 atmos_8xdaily_instant.tile1.nc.0003 atmos_8xdaily_instant.tile1.nc.0004 atmos_8xdaily_instant.tile1.nc.0005 atmos_8xdaily_instant.tile1.nc.0006 atmos_8xdaily_instant.tile1.nc.0007 atmos_8xdaily_instant.tile1.nc.0008
++ mkdir -p /home/wilde/LZ/HiRAMTools/out/19500101
++ dd if=out.nc of=/home/wilde/LZ/HiRAMTools/out/19500101/atmos_8xdaily_instant.tile1.trans bs=4M
+169+1 records in
+169+1 records out
+709232288 bytes (709 MB) copied, 53.395 seconds, 13.3 MB/s
++ mv /home/wilde/LZ/HiRAMTools/out/19500101/atmos_8xdaily_instant.tile1.trans /home/wilde/LZ/HiRAMTools/out/19500101/atmos_8xdaily_instant.tile1
++ cd ..
++ rm -rf /scratch/wilde/combine_Z24942

Added: SwiftApps/ParVis/HiRAMTools/JUNK/t2.out
===================================================================
--- SwiftApps/ParVis/HiRAMTools/JUNK/t2.out	                        (rev 0)
+++ SwiftApps/ParVis/HiRAMTools/JUNK/t2.out	2012-10-10 14:47:34 UTC (rev 5963)
@@ -0,0 +1,24 @@
++ outdir=/home/wilde/LZ/HiRAMTools/out2
++ inpattern=/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1
++++ dirname /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101
++ date=19500101
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1
++ basepattern=atmos_8xdaily_instant.tile1
++ infiles='/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1*'
++ mppncombine=/home/ckerr/bin/fms/tools/x86_64/bin/mppnccombine.exe
++ mode=scratch
++ badnodes=login2
+++ hostname
++ thisnode=login2
++ echo login2
++ grep -q login2
++ mode=direct
++ set -o errexit
++ export PATH=/soft/apps/nco-3.9.2/bin:/home/wilde/swift/src/cog/modules/swift/dist/swift-svn/bin:/home/wilde/e/protlib2/bin:/home/wilde/e/ptmap/bin:/bin:/usr/sbin:/etc:/usr/X11R6/bin:/usr/bin:/sbin:/usr/local/bin:/software/common/apps/projects-list/bin:/software/common/adm/softenv/bin:/home/wilde/bin/linux-sles10-x86_64:/home/wilde/bin:.:/soft/apps/darshan/bin:/soft/apps/darshan/bin/default:/usr/lib/mit/bin:/usr/lib/mit/sbin
++ PATH=/soft/apps/nco-3.9.2/bin:/home/wilde/swift/src/cog/modules/swift/dist/swift-svn/bin:/home/wilde/e/protlib2/bin:/home/wilde/e/ptmap/bin:/bin:/usr/sbin:/etc:/usr/X11R6/bin:/usr/bin:/sbin:/usr/local/bin:/software/common/apps/projects-list/bin:/software/common/adm/softenv/bin:/home/wilde/bin/linux-sles10-x86_64:/home/wilde/bin:.:/soft/apps/darshan/bin:/soft/apps/darshan/bin/default:/usr/lib/mit/bin:/usr/lib/mit/sbin
++ export LD_LIBRARY_PATH=/soft/apps/intel-fc-11.0.074/lib/intel64:/soft/apps/intel-cc-11.0.074/lib/intel64:/soft/apps/netcdf-3.6.3/lib:/usr/lib:/usr/X11R6/lib:/usr/local/lib
++ LD_LIBRARY_PATH=/soft/apps/intel-fc-11.0.074/lib/intel64:/soft/apps/intel-cc-11.0.074/lib/intel64:/soft/apps/netcdf-3.6.3/lib:/usr/lib:/usr/X11R6/lib:/usr/local/lib
++ '[' direct = scratch ']'
++ mkdir -p /home/wilde/LZ/HiRAMTools/out2/19500101
++ /home/ckerr/bin/fms/tools/x86_64/bin/mppnccombine.exe /home/wilde/LZ/HiRAMTools/out2/19500101/atmos_8xdaily_instant.tile1 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0000 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0001 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0002 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0003 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0004 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0005 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0006 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0007 /intrepid
 -fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0008

Added: SwiftApps/ParVis/HiRAMTools/JUNK/t3.out
===================================================================
--- SwiftApps/ParVis/HiRAMTools/JUNK/t3.out	                        (rev 0)
+++ SwiftApps/ParVis/HiRAMTools/JUNK/t3.out	2012-10-10 14:47:34 UTC (rev 5963)
@@ -0,0 +1,24 @@
++ outdir=/home/wilde/LZ/HiRAMTools/out3
++ inpattern=/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1
++++ dirname /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101
++ date=19500101
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1
++ basepattern=atmos_8xdaily_instant.tile1
++ infiles='/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1*'
++ mppncombine=/home/ckerr/bin/fms/tools/x86_64/bin/mppnccombine.exe
++ mode=scratch
++ badnodes=login2
+++ hostname
++ thisnode=login2
++ echo login2
++ grep -q login2
++ mode=direct
++ set -o errexit
++ export PATH=/soft/apps/nco-3.9.2/bin:/home/wilde/swift/src/cog/modules/swift/dist/swift-svn/bin:/home/wilde/e/protlib2/bin:/home/wilde/e/ptmap/bin:/bin:/usr/sbin:/etc:/usr/X11R6/bin:/usr/bin:/sbin:/usr/local/bin:/software/common/apps/projects-list/bin:/software/common/adm/softenv/bin:/home/wilde/bin/linux-sles10-x86_64:/home/wilde/bin:.:/soft/apps/darshan/bin:/soft/apps/darshan/bin/default:/usr/lib/mit/bin:/usr/lib/mit/sbin
++ PATH=/soft/apps/nco-3.9.2/bin:/home/wilde/swift/src/cog/modules/swift/dist/swift-svn/bin:/home/wilde/e/protlib2/bin:/home/wilde/e/ptmap/bin:/bin:/usr/sbin:/etc:/usr/X11R6/bin:/usr/bin:/sbin:/usr/local/bin:/software/common/apps/projects-list/bin:/software/common/adm/softenv/bin:/home/wilde/bin/linux-sles10-x86_64:/home/wilde/bin:.:/soft/apps/darshan/bin:/soft/apps/darshan/bin/default:/usr/lib/mit/bin:/usr/lib/mit/sbin
++ export LD_LIBRARY_PATH=/soft/apps/intel-fc-11.0.074/lib/intel64:/soft/apps/intel-cc-11.0.074/lib/intel64:/soft/apps/netcdf-3.6.3/lib:/usr/lib:/usr/X11R6/lib:/usr/local/lib
++ LD_LIBRARY_PATH=/soft/apps/intel-fc-11.0.074/lib/intel64:/soft/apps/intel-cc-11.0.074/lib/intel64:/soft/apps/netcdf-3.6.3/lib:/usr/lib:/usr/X11R6/lib:/usr/local/lib
++ '[' direct = scratch ']'
++ mkdir -p /home/wilde/LZ/HiRAMTools/out3/19500101
++ /home/ckerr/bin/fms/tools/x86_64/bin/mppnccombine.exe /home/wilde/LZ/HiRAMTools/out3/19500101/atmos_8xdaily_instant.tile1 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0000 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0001 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0002 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0003 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0004 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0005 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0006 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0007 /intrepid
 -fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0008

Added: SwiftApps/ParVis/HiRAMTools/JUNK/t4.out
===================================================================
--- SwiftApps/ParVis/HiRAMTools/JUNK/t4.out	                        (rev 0)
+++ SwiftApps/ParVis/HiRAMTools/JUNK/t4.out	2012-10-10 14:47:34 UTC (rev 5963)
@@ -0,0 +1,33 @@
++ outdir=/home/wilde/LZ/HiRAMTools/out4
++ inpattern=/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1
++++ dirname /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101
++ date=19500101
+++ basename /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1
++ basepattern=atmos_8xdaily_instant.tile1
++ infiles='/intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1*'
++ mppncombine=/home/ckerr/bin/fms/tools/x86_64/bin/mppnccombine.exe
++ mode=scratch
++ badnodes=loginx
+++ hostname
++ thisnode=login2
++ echo loginx
++ grep -q login2
++ mkdir -p /NOscratch/wilde
+mkdir: cannot create directory `/NOscratch': Permission denied
+++ mktemp -d /NOscratch/wilde/combine_XXXXXX
+mktemp: cannot make temp dir /NOscratch/wilde/combine_F29357: No such file or directory
++ tmp=
++ '[' 1 '!=' 0 ']'
++ echo Failed to create tmp dir on /scratch/wilde. Will run in direct mode.
+Failed to create tmp dir on /scratch/wilde. Will run in direct mode.
++ mode=direct
++ set -o errexit
++ export PATH=/soft/apps/nco-3.9.2/bin:/home/wilde/swift/src/cog/modules/swift/dist/swift-svn/bin:/home/wilde/e/protlib2/bin:/home/wilde/e/ptmap/bin:/bin:/usr/sbin:/etc:/usr/X11R6/bin:/usr/bin:/sbin:/usr/local/bin:/software/common/apps/projects-list/bin:/software/common/adm/softenv/bin:/home/wilde/bin/linux-sles10-x86_64:/home/wilde/bin:.:/soft/apps/darshan/bin:/soft/apps/darshan/bin/default:/usr/lib/mit/bin:/usr/lib/mit/sbin
++ PATH=/soft/apps/nco-3.9.2/bin:/home/wilde/swift/src/cog/modules/swift/dist/swift-svn/bin:/home/wilde/e/protlib2/bin:/home/wilde/e/ptmap/bin:/bin:/usr/sbin:/etc:/usr/X11R6/bin:/usr/bin:/sbin:/usr/local/bin:/software/common/apps/projects-list/bin:/software/common/adm/softenv/bin:/home/wilde/bin/linux-sles10-x86_64:/home/wilde/bin:.:/soft/apps/darshan/bin:/soft/apps/darshan/bin/default:/usr/lib/mit/bin:/usr/lib/mit/sbin
++ export LD_LIBRARY_PATH=/soft/apps/intel-fc-11.0.074/lib/intel64:/soft/apps/intel-cc-11.0.074/lib/intel64:/soft/apps/netcdf-3.6.3/lib:/usr/lib:/usr/X11R6/lib:/usr/local/lib
++ LD_LIBRARY_PATH=/soft/apps/intel-fc-11.0.074/lib/intel64:/soft/apps/intel-cc-11.0.074/lib/intel64:/soft/apps/netcdf-3.6.3/lib:/usr/lib:/usr/X11R6/lib:/usr/local/lib
++ '[' direct = scratch ']'
++ mkdir -p /home/wilde/LZ/HiRAMTools/out4/19500101
++ /home/ckerr/bin/fms/tools/x86_64/bin/mppnccombine.exe /home/wilde/LZ/HiRAMTools/out4/19500101/atmos_8xdaily_instant.tile1 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0000 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0001 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0002 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0003 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0004 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0005 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0006 /intrepid-fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0007 /intrepid
 -fs0/users/lzamboni/persistent/en3qth0.05Ic1/history/19500101/atmos_8xdaily_instant.tile1.nc.0008
+Error: output file seems to exist already!

Added: SwiftApps/ParVis/HiRAMTools/JUNK/tofix
===================================================================
--- SwiftApps/ParVis/HiRAMTools/JUNK/tofix	                        (rev 0)
+++ SwiftApps/ParVis/HiRAMTools/JUNK/tofix	2012-10-10 14:47:34 UTC (rev 5963)
@@ -0,0 +1,53 @@
+[x] first of all, if you need to run, make sure you're using the following version
+of NCO (which is a package that handles netCDF files)
+
+nco-4.0.9 for yearly reorganization
+
+nco-3.9.2 for pfrepp and for combine (combine might not used nco at all, but
+this is our solution today)
+
+when we know makeyearly, combine and pfrepp work, we may want to test whether
+the following version works for all cases (as ALCF Support suggests)
+
+3.9.9-udunits2
+
+---
+
+You can referred to my working dir /home/lzamboni/SWIFT/output/en1eo12Ic3 to
+track these changes (don't look at either en1eo12Ic1 or en1eo12Ic2):
+
+[no] 1) I renamed combine_realization.sh as combine_realizations.sh (note the "s"
+before .sh) since this is what the script expects.
+
+[x] fixed in README: 2) what is referred to as runall.combine_realizations.sh in the README (see in
+6.) is actually runall.sh so I changed that.
+
+3) On real.todo I added the full path of the input files and not only the name
+  of the realization. (what in the README is Climo_001 needs to be
+  /intrepid-fs0/users/lzamboni/persistent/Climo_001/history instead; what
+  changes between different realizations is only the dirname between
+  persistent and history)
+
+[x] used combine.chk.sh version, renamed it to combine.sh: 4) what is referred to as combine.sh is actually combine.chk.sh
+
+[x] .shk version used $USER: 5) on this combine.chk.sh I changed "wilde" to "lzamboni" 
+ 
+6) this is the part that needs adjustments: in runall.config I changed outdir
+(which is where the output goes)
+
+if you look at the dir I pointed you to, you'll see that in that case
+outdir=/intrepid-fs0/users/lzamboni/persistent/combined/en1eo12Ic3 which
+creates "en1eo12Ic3" under /intrepid-fs0/users/lzamboni/persistent/combined/
+
+as is, I cannot process 2 realizations (say en1eo12Ic4 and en1eo14Ic1) and
+have the output in separate directories.
+
+At the moment I am running runall.sh to process 2 realizations (en1eo12Ic4 and
+en1eo14Ic1). I set outdir=/intrepid-fs0/users/lzamboni/persistent/combined/ in
+runall.config
+
+Even if it completes without problems, I would like to be able to specify just
+the name of the realization (real_name) and obtaining the output in
+/intrepid-fs0/users/lzamboni/persistent/combined/real_name.  The input data
+are always in /intrepid-fs0/users/lzamboni/persistent/real_name/history.
+