[Swift-commit] r5981 - SwiftApps/EpiSnp

[wilde at ci.uchicago.edu]

Author: wilde
Date: 2012-10-19 15:50:07 -0500 (Fri, 19 Oct 2012)
New Revision: 5981

Modified:
   SwiftApps/EpiSnp/README
Log:
Update README

Modified: SwiftApps/EpiSnp/README
===================================================================
--- SwiftApps/EpiSnp/README	2012-10-19 20:43:18 UTC (rev 5980)
+++ SwiftApps/EpiSnp/README	2012-10-19 20:50:07 UTC (rev 5981)
@@ -8,3 +8,20 @@
   nRuns is the number of EpiSnp application invocations to run (default 1)
   initSingle is the base value of parameter output results for single SNP tests  (default:1000)
   initPairs is the base value of parameter output results for pairwise SNP tests (default:10000)
+
+Examples:
+
+   module load java
+
+   # Get a more recent version of Swift:
+   PATH=/home/wilde/swift/src/trunk/cog/modules/swift/dist/swift-svn/bin:$PATH
+
+  ./runepisnp.sh                  # runs 1 invocation on local host
+
+  ./runepisnp.sh local 10         # runs 10 invocations on local host
+
+  ./runepisnp.sh midway 100       # runs 100 invocations on midway cluster
+
+  ./runepisnp.sh midway 100 10 20 # runs 100 invocations on midway cluster with specific parameters
+
+