Mon Feb 20 18:28:36 CST 2012

Author: ketan
Date: 2012-02-20 18:26:50 -0600 (Mon, 20 Feb 2012)
New Revision: 5660

Added:
   SwiftApps/Cybershake/app/post/
   SwiftApps/Cybershake/app/post/CheckSgt/
   SwiftApps/Cybershake/app/post/CheckSgt/CheckSgt.py
   SwiftApps/Cybershake/app/post/Compilers.mk
   SwiftApps/Cybershake/app/post/Getpar/
   SwiftApps/Cybershake/app/post/Getpar/getpar/
   SwiftApps/Cybershake/app/post/Getpar/getpar/include/
   SwiftApps/Cybershake/app/post/Getpar/getpar/include/getpar.h
   SwiftApps/Cybershake/app/post/Getpar/getpar/include/libget.h
   SwiftApps/Cybershake/app/post/Getpar/getpar/lib/
   SwiftApps/Cybershake/app/post/Getpar/getpar/man/
   SwiftApps/Cybershake/app/post/Getpar/getpar/man/man3/
   SwiftApps/Cybershake/app/post/Getpar/getpar/man/man3/getarg.3
   SwiftApps/Cybershake/app/post/Getpar/getpar/man/man3/getpar.3
   SwiftApps/Cybershake/app/post/Getpar/getpar/man/windex
   SwiftApps/Cybershake/app/post/Getpar/getpar/src/
   SwiftApps/Cybershake/app/post/Getpar/getpar/src/Makefile
   SwiftApps/Cybershake/app/post/Getpar/getpar/src/defpar.c
   SwiftApps/Cybershake/app/post/Getpar/getpar/src/getarg.3
   SwiftApps/Cybershake/app/post/Getpar/getpar/src/getarg.c
   SwiftApps/Cybershake/app/post/Getpar/getpar/src/getlocation.c
   SwiftApps/Cybershake/app/post/Getpar/getpar/src/getlocation.c.save
   SwiftApps/Cybershake/app/post/Getpar/getpar/src/getpar.3
   SwiftApps/Cybershake/app/post/Getpar/getpar/src/getpar.c
   SwiftApps/Cybershake/app/post/Getpar/getpar/src/getpar.tar.gz
   SwiftApps/Cybershake/app/post/Getpar/getpar/src/libget.h
   SwiftApps/Cybershake/app/post/JBSim3d/
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/defs.h
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/fourg.f
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/function.h
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/generf.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-mreal.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-mreal_OLD-IO.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-v2.0.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-v2.1.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslipALL.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/include.h
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/iofunc.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/makefile
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/misc.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/mmm
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/ruptime.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/slip.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/spec-s0000
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/spec-s_avg
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/srf_subs.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/structure.h
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/fourg.f
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/makefile
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/resamp_slip-flip.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/resamp_slip.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/test_rand
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/test_rand.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/bailey2srf.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/defs.h
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/function.h
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/gene2gsf.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/generic_slip2srf.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/generic_slip2srfGOOD.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/include.h
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/inv2_5x4.stoch
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/inv2xyz.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/iofunc.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/makefile
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/misc.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2moment.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2stoch.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2svf.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2xyz.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_const-rv.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_resamp.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_rotate-rake.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_subs.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/stoch2xyz.c
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/structure.h
   SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/testget.c
   SwiftApps/Cybershake/app/post/JBSim3d/Vel0.5/
   SwiftApps/Cybershake/app/post/JBSim3d/Vel0.5/usc.000
   SwiftApps/Cybershake/app/post/JBSim3d/Vel0.5/usc.090
   SwiftApps/Cybershake/app/post/JBSim3d/Vel0.5/usc.ver
   SwiftApps/Cybershake/app/post/JBSim3d/bin/
   SwiftApps/Cybershake/app/post/JBSim3d/bin/jbsim3d
   SwiftApps/Cybershake/app/post/JBSim3d/jbrun.csh
   SwiftApps/Cybershake/app/post/JBSim3d/src/
   SwiftApps/Cybershake/app/post/JBSim3d/src/bailey2srfOLD.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/beroza_rupm.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/defs.h
   SwiftApps/Cybershake/app/post/JBSim3d/src/fourg.f
   SwiftApps/Cybershake/app/post/JBSim3d/src/function.h
   SwiftApps/Cybershake/app/post/JBSim3d/src/gen_gflist.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/gene_rupm.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/geoproj_subs.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/get_ruptime.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/greenfunc.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/include.h
   SwiftApps/Cybershake/app/post/JBSim3d/src/iofunc.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim032906.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim3d
   SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim3d.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/makefile
   SwiftApps/Cybershake/app/post/JBSim3d/src/misc_subs.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/okumura_rupm.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/ray_stimes.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/rob_rupm.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/ruptime.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/sgt3d_subs.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/srf_rupm.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/srf_rupmOLD.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/stf_subs.c
   SwiftApps/Cybershake/app/post/JBSim3d/src/structure.h
   SwiftApps/Cybershake/app/post/JBSim3d/src/structureOLD.h
   SwiftApps/Cybershake/app/post/JBSim3d/src/structureOLD2.h
   SwiftApps/Cybershake/app/post/Makefile
   SwiftApps/Cybershake/app/post/Notify/
   SwiftApps/Cybershake/app/post/Notify/SendStatus.py
   SwiftApps/Cybershake/app/post/README
   SwiftApps/Cybershake/app/post/RunManager/
   SwiftApps/Cybershake/app/post/RunManager/CompCurveFile.py
   SwiftApps/Cybershake/app/post/RunManager/Condor.py
   SwiftApps/Cybershake/app/post/RunManager/CondorJob.py
   SwiftApps/Cybershake/app/post/RunManager/Config.py
   SwiftApps/Cybershake/app/post/RunManager/Curve.py
   SwiftApps/Cybershake/app/post/RunManager/Database.py
   SwiftApps/Cybershake/app/post/RunManager/Mailer.py
   SwiftApps/Cybershake/app/post/RunManager/RLS.py
   SwiftApps/Cybershake/app/post/RunManager/Run.py
   SwiftApps/Cybershake/app/post/RunManager/RunManager.py
   SwiftApps/Cybershake/app/post/RunManager/RunStats.py
   SwiftApps/Cybershake/app/post/RunManager/SendStatus.py
   SwiftApps/Cybershake/app/post/RunManager/Site.py
   SwiftApps/Cybershake/app/post/RunManager/UpdateRunState.py
   SwiftApps/Cybershake/app/post/RunManager/website/
   SwiftApps/Cybershake/app/post/RunManager/website/CyberShake-STD.png
   SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/
   SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/HTMLLib.py
   SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/addrun.py
   SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/deleterun.py
   SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/details.py
   SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/dispstats.py
   SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/doadd.py
   SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/dodelete.py
   SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/doedit.py
   SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/loadpng.py
   SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/modifyrun.py
   SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/runmanager.py
   SwiftApps/Cybershake/app/post/RunManager/website/index.html
   SwiftApps/Cybershake/app/post/RunManager/website/notes.html
   SwiftApps/Cybershake/app/post/SpectralAcceleration/
   SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/
   SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/Makefile
   SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/sub_bandpass.c
   SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/surfseis_rspectra
   SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/surfseis_rspectra.f
   SwiftApps/Cybershake/app/post/SpectralAcceleration/setparm/
   SwiftApps/Cybershake/app/post/SpectralAcceleration/setparm/setparm180.f
   SwiftApps/Cybershake/app/post/Zip/
   SwiftApps/Cybershake/app/post/Zip/zip_peakSA.sh
   SwiftApps/Cybershake/app/post/Zip/zip_seismograms.sh
   SwiftApps/Cybershake/app/post/agg_seispeak.sh
   SwiftApps/Cybershake/app/post/agg_seispeak.sh.old
   SwiftApps/Cybershake/app/post/recompute.sh
   SwiftApps/Cybershake/app/post/seispeak.sh
   SwiftApps/Cybershake/app/post/testing/
   SwiftApps/Cybershake/app/post/testing/PeakVals_TEST_218_256_127.bsa
   SwiftApps/Cybershake/app/post/testing/Seismogram_TEST_218_256_127.grm
   SwiftApps/Cybershake/app/post/testing/TEST_218_256_subfx.sgt
   SwiftApps/Cybershake/app/post/testing/TEST_218_256_subfy.sgt
   SwiftApps/Cybershake/app/post/testing/extract.sh
   SwiftApps/Cybershake/app/post/testing/links/
   SwiftApps/Cybershake/app/post/testing/links/218_256.txt.variation-s0015-h0007
   SwiftApps/Cybershake/app/post/testing/peak.sh
   SwiftApps/Cybershake/app/post/testing/seis.sh
   SwiftApps/Cybershake/app/post/trusted.caches
Log:
added source of scec

Added: SwiftApps/Cybershake/app/post/CheckSgt/CheckSgt.py
===================================================================

--- SwiftApps/Cybershake/app/post/CheckSgt/CheckSgt.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/CheckSgt/CheckSgt.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,91 @@
+#!/usr/bin/env python
+
+import sys
+import os
+import md5
+
+
+# Global vars
+sgtfile = ""
+md5file = ""
+
+
+def init():
+    global sgtfile
+    global md5file
+        
+    # Get number of command-line arguments
+    argc = len(sys.argv)
+    
+    # Parse command line arguments
+    if (argc < 3):
+        print "Usage: " + sys.argv[0] + " <sgt file> <md5 file>"
+        print "Example: " + sys.argv[0] + " USC_fx.sgt USC_fx.sgt.md5"
+        return 1
+            
+    sgtfile = sys.argv[1]
+    md5file = sys.argv[2]
+
+    print "Configuration:"
+    print "SGT File:\t" + sgtfile
+    print "MD5 File:\t" + md5file + "\n"
+    
+    # Check that the files exist
+    if (not os.path.isfile(sgtfile)):
+        print "SGT file " + sgtfile + " not found"
+        return 1
+    if (not os.path.isfile(md5file)):
+        print "MD5 file " + md5file + " not found"
+        return 1  
+    
+    return 0
+
+
+def main():
+    # Load the sum from the saved md5 file
+    oldmd5val = ""
+    try:
+        oldmd5file = open(md5file, 'r')
+        line = oldmd5file.readline()
+        oldmd5val = line.split(" ")[0]
+        oldmd5file.close()
+        if (len(oldmd5val) != 32):
+            print "Invalid md5sum found: " + oldmd5val
+            return 1
+    except:
+        print "Unable to read " + md5file
+        return 1
+    
+    print "Old md5sum: " + oldmd5val
+    
+    # Read in the SGT file and compute new md5
+    m = md5.new()
+    sgt = open(sgtfile, 'r') # open in binary mode
+    while True:
+        buf = sgt.read(1024)
+        if len(buf) == 0:
+            break # end of file
+        m.update(buf)
+
+    newmd5val = m.hexdigest()
+    print "New md5sum: " +  newmd5val
+
+    # Compare the old and new md5 values
+    if (oldmd5val != newmd5val):
+        print "md5 checksums do not match!"
+        return 1
+    
+    return 0
+
+
+def cleanup():
+    return 0
+
+
+if __name__ == '__main__':
+    if (init() != 0):
+        sys.exit(1)
+    if (main() != 0):
+        sys.exit(1)
+    cleanup()
+    sys.exit(0)


Property changes on: SwiftApps/Cybershake/app/post/CheckSgt/CheckSgt.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/Compilers.mk
===================================================================
--- SwiftApps/Cybershake/app/post/Compilers.mk	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Compilers.mk	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,72 @@
+# This makefile fragment helps us to choose the appropriate
+# compilers for the site where we are compiling.
+
+# Notes On Specific Modules:
+#
+# SpectralAcceleration/p2utils:
+#       - attempts to use ifort/icc is available but will
+#         fall back to the configured MY_FC declared here
+# V4-WrapC/src:
+#       - ensure it uses a fortran-77 compliant compiler (MY_FC77)
+#       - will generate errors with gfortran 4.2 or lower
+#       - may work with gfortran 4.3 and above since that supports
+#         -finit-local-zero option.
+#
+
+# Get the hostname we are running on
+HOSTNAME = $(shell hostname -f)
+
+# PSC BigBen  (Cray XT3)
+# Note: For this to work you need to have your environment set
+#       up with the gcc compilers, not the PG compilers. On
+#       BigBen you need to use these commands:
+#          module switch PrgEnv-pgi PrgEnv-gnu
+#          module unload acml/3.0
+#          module load gcc/4.0.2
+ifeq (bigben,$(findstring bigben, $(HOSTNAME)))
+        MY_CC = cc
+        MY_FC = ftn
+        MY_MPICC = mpicc
+        MY_FC77 = ftn
+        MY_MPIFC = ftn 
+        MY_CFLAGS = 
+        MY_FFLAGS = -ffixed-line-length-132
+endif
+
+# NICS kraken  (Cray XT5)
+# Note: For this to work you need to have your environment set
+#       up with the gcc compilers, not the PG compilers. On
+#       Kraken you need to use these commands:
+#          module purge
+#	   module load Base-opts
+#	   module load PrgEnv-gnu
+ifeq (kraken,$(findstring kraken, $(HOSTNAME)))
+        MY_CC = cc
+        MY_FC = ftn
+        MY_FC77 = ftn
+        MY_MPICC = cc
+        MY_MPIFC = ftn
+        MY_CFLAGS =
+        MY_FFLAGS = -ffixed-line-length-132
+
+# Default (gcc)
+# Note: For this to work you need to make sure that your
+#       environment is set up to use the version of mpicc
+#       and mpif77 that was configured to use the GNU 
+#       compilers gcc and g77. You can accomplish this on
+#       most of the teragrid sites using SoftEnv. Try typing
+#       'softenv' at the command prompt to get a list of 
+#       available modules. Look for one that says '+mpich-*-gcc' 
+#       or something similar to that. Of course, it is going
+#       to work best if the mpi you choose uses the interconnect
+#       supported by the site (infiniband, myrinet, etc.).
+else
+        MY_CC = icc
+        MY_FC = ifort
+        MY_FC77 = icc
+        MY_MPICC = mpicc -m32
+        MY_MPIFC = mpif77 -m32
+        MY_CFLAGS =
+        MY_FFLAGS = -ffixed-line-length-132
+	#MY_FFLAGS = -finit-local-zero -ffixed-line-length-132
+endif

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/include/getpar.h
===================================================================
--- SwiftApps/Cybershake/app/post/Getpar/getpar/include/getpar.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Getpar/getpar/include/getpar.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,39 @@
+  /*
+   *  libpar.h include file.
+   *
+   *  Provide function definitions/prototypes for the 
+   *  routines found in libpar.a.  Note these routines may change if 
+   *  a new release of libpar is received.  Unfortunately this file 
+   *  and the release are independent.
+   */
+    
+#ifndef _LIBPAR_H
+#define _LIBPAR_H 1
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+    
+extern int	countarg(char *name, char *type);
+extern void	endarg (void);
+extern void	endpar (void);
+extern int	getarg (char *name, char *type, void *ptr_to_some_type);
+extern int	getpar (char *name, char *type, void *ptr_to_some_type);
+extern int	lenarg (char *name);
+extern int	mstpar (char *name, char *type, void *ptr_to_some_type);
+extern void	setarg (char *list, char *subname);
+extern int	setpar (int argc, char **argv);
+extern char    *getspar(char *name, char *defvalue);
+extern char    *mstspar(char *name);
+extern char    *getsarg(char *name, char *defvalue);
+extern int	getbpar(char *name, int defvalue);
+extern int	getdpar(char *name, int defvalue);
+extern float	getfpar(char *name, float defvalue);
+extern double	getffpar(char *name, double defvalue);
+extern int      getlocation(char *keyname, char *location, int fatal);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif	/* _LIBPAR_H */

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/include/libget.h
===================================================================
--- SwiftApps/Cybershake/app/post/Getpar/getpar/include/libget.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Getpar/getpar/include/libget.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,39 @@
+  /*
+   *  libpar.h include file.
+   *
+   *  Provide function definitions/prototypes for the 
+   *  routines found in libpar.a.  Note these routines may change if 
+   *  a new release of libpar is received.  Unfortunately this file 
+   *  and the release are independent.
+   */
+    
+#ifndef _LIBPAR_H
+#define _LIBPAR_H 1
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+    
+extern int	countarg(char *name, char *type);
+extern void	endarg (void);
+extern void	endpar (void);
+extern int	getarg (char *name, char *type, void *ptr_to_some_type);
+extern int	getpar (char *name, char *type, void *ptr_to_some_type);
+extern int	lenarg (char *name);
+extern int	mstpar (char *name, char *type, void *ptr_to_some_type);
+extern void	setarg (char *list, char *subname);
+extern int	setpar (int argc, char **argv);
+extern char    *getspar(char *name, char *defvalue);
+extern char    *mstspar(char *name);
+extern char    *getsarg(char *name, char *defvalue);
+extern int	getbpar(char *name, int defvalue);
+extern int	getdpar(char *name, int defvalue);
+extern float	getfpar(char *name, float defvalue);
+extern double	getffpar(char *name, double defvalue);
+extern int      getlocation(char *keyname, char *location, int fatal);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif	/* _LIBPAR_H */

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/man/man3/getarg.3
===================================================================
--- SwiftApps/Cybershake/app/post/Getpar/getpar/man/man3/getarg.3	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Getpar/getpar/man/man3/getarg.3	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,459 @@
+.\" @(#)getarg.3	56.1 10/25/93
+.nr Np 0 1
+.TH GETARG 3 "May 1991"
+.SH NAME
+.B getarg 
+routines -\ get arguments from a string
+.br
+.SH SYNOPSIS
+#include "libget.h"
+.PP
+.B void setarg(char *argstring, char *subname)
+.PP
+.B void setarg_(char *argstring, char *subname,
+.B int dum1, int dum2)
+.PP
+.B int countarg(char *name, char *type)
+.PP
+.B int cntarg_(char *name, char *type,
+.B int dum1, int dum2)
+.PP
+.B int lenarg(char *name)
+.PP
+.B int getarg(char *name, char *type,
+.B void *pointer)
+.PP
+.B fgtarg_(char *name, char *type,
+.B void *pointer, int dum1, int dum2, int lens)
+.PP
+.B void endarg(void)
+.PP
+.B void endarg_(void)
+.PP
+In the subroutines 
+.B getarg()
+and
+.B fgtarg_()
+the declaration for the argument
+.B pointer
+depends on the argument type
+.B type.
+.br
+.SH DESCRIPTION
+.br
+The
+.B getarg
+routines provide a simple procedure for passing optional arguments
+to subroutines and for parsing strings into data values.  The syntax
+of the functions and the format of the parameter specification
+is similar to
+.B getpar(3).
+.PP
+The subroutine
+.I setarg()
+initializes the
+.B getarg
+package, and it must be called before any other references to
+.B getarg.
+The two arguments to
+.I setarg() 
+are a character string containing optional arguments
+and a subroutine name (for error reporting).
+The pointer to either the character string or the subroutine name may be
+.I NULL
+but they cannot both be
+.I NULL.
+.PP
+The subroutine
+.I countarg()
+takes two arguments:
+.I name
+and
+.I type.
+.I Name
+is the external name of the variable initialized in
+.I setarg().
+.I Type
+specifies the variable type, one of 
+.I d, f, F, 
+or 
+.I s.
+.I Countarg
+counts the number of elements for the vector
+.I name.
+It is useful for ascertaining the vector limit
+for data retrieval via
+.I getarg().
+Upon successful completion,
+.I countarg()
+returns the number of elements for the parameter, or zero if there are no
+elements.
+.PP
+The subroutine
+.I lenarg()
+takes one argument:  
+.I name.
+.I Name
+is the external name of the variable initialized in
+.I setarg().
+.I Lenarg()
+determines the length of the longest element in the
+.I name
+vector.
+It is useful for ascertaining the memory space needed to
+accommodate the largest string in a character string vector.
+Upon successful completion,
+.I lenarg()
+returns a value guaranteed to be at least as large as the 
+length of the longest string argument.  It returns zero
+if there are no arguments.
+.PP
+The subroutine
+.I getarg()
+takes three arguments:
+.I name, type,
+and
+.I pointer.
+.I Name
+is the external name of the variable initialized in
+.I setarg().
+.I Type
+specifies the variable type.
+The currently valid types are:
+.IP "" 5
+"d"	integer
+.br
+"f"	float
+.br
+"F"	double
+.br
+"s"	character string
+.br
+"b"	boolean (integer)
+.br
+"vd"	integer vector
+.br
+"vf"	float vector
+.br
+"vF"	double vector
+.br
+"vs"	character string vector
+.PP
+The 
+.I type
+parameter can be expanded to indicate the maximum number of elements
+allowable in vectors.  For example type="vf[4]" or type="vf(4)"
+would cause
+.I getarg()
+to modify no more than 4 elements of the vector, regardless of how
+many elements are in the argument list
+initialized in
+.I setarg().
+If no limit is specified, a limit of 10 is quietly enforced.  If there 
+are fewer elements than the limit the vector will only be modified up
+to the number of elements.
+.PP
+.I Pointer
+is a pointer to the type of variable indicated by
+.I type.
+If no occurrences of the parameter
+.I name
+is found, the contents of
+.I pointer
+are not modified.
+.PP`
+.I Getarg()
+returns 1 for a successful conversion, and 0 if unsuccessful.  In the
+case of vectors
+.I getarg()
+returns the number of elements found, or 0 if an unsuccessful conversion
+occurs at any index in the vector.
+.PP
+The subroutine
+.I endarg()
+gracefully terminates the package.
+.PP
+The Fortran interface subroutines
+.I setarg_()
+,
+.I cntarg_()
+,
+.I fgtarg_()
+and
+.I endarg_()
+are equivalent with the exception that 
+.I fgtarg_() 
+does not process vectors of character strings.  Also, there is no
+Fortran equivalent for
+.I lenarg().
+.PP
+The following program example illustrates the use of 
+.B getarg
+for the purpose of parsing optional subroutine arguments.
+It is intended for use with subroutines that have a few essential
+arguments and many optional ones.
+.IP "" 5
+sub(x,lx,list)
+.br
+float *x;
+.br
+int lx; 
+.br
+char *list;
+.br
+   {
+.br
+	int opt1, boo;
+.br
+	float fopt2;
+.br
+	char title[40];
+.br
+
+.br
+	/* set defaults */
+.br
+	opt1= 10;
+.br
+	fopt2= 5.0;
+.br
+	title[0]= '\0';
+.br
+	boo= 1;	/* true */
+.br
+
+.br
+	setarg(list,"sub");	/* initialize getarg package */
+.br
+	getarg("opt1","d",&opt1);
+.br
+	getarg("fopt2","f",&fopt2);
+.br
+	getarg("title","s",title);
+.br
+	getarg("boo","b",&boo);
+.br
+	endarg();		/* deactivate getarg package */
+.br
+
+.br
+	/* rest of subroutine */
+.br
+   }
+.PP
+The minimal call to this subroutine would be
+.IP "" 5
+sub(x,lx,0);
+.br
+.ti 0
+or
+.br
+sub(x,lx,"");
+.PP
+in which case the default values of all the options are used.
+To change some of the options, the call would be
+.IP "" 5
+sub(x,lx,"opt1=100 fopt2=2.0 title='new title' noboo");
+.br
+.PP
+.B NOTE:
+If the variables are defaulted by giving them initializations in
+static declarations,
+then subsequent calls to subroutines that use
+.B getarg
+may have their default values modified by previous calls.
+.PP
+The next program example illustrates the use of
+.B getarg 
+for the purpose of parsing a string argument into data values.
+.IP "" 5
+get_msg(list)
+.br
+char *list;
+.br
+   {
+.br
+	double *time;
+.br
+	char **sta_chans, dbtemp[BUFSIZ], format[BUFSIZ];
+.br
+	int orid, count_times, count_stas;
+.br
+	int get_times, get_stas, len_stas;
+.br
+
+.br
+	setarg(list, NULL); /* initialize getarg package */
+.br
+
+.br
+	count_times = countarg("channel-time", "F");  /* determine size of double vector */
+.br
+	time = (double *) malloc(count_times * sizeof(double)); /* create space */
+.br
+	sprintf(format, "vF[%d]", count_times); /* format the type parameter */
+.br
+	get_times = getarg("channel-time", format, time);  /* retrieve the data */
+.br
+	if (count_times != get_times)
+.br
+	  	/* error */
+.br
+
+.br
+	/*
+.br
+	 * For the string vector ascertain the number of elements and
+.br
+	 * the length of the longest element in the vector channel.
+.br
+	 * Malloc the appropriate amount of memory space before calling
+.br
+	 * getarg().
+.br
+	 */
+.br
+	count_stas = countarg("channel", "s");
+.br
+	len_stas = lenarg("channel");
+.br
+	sta_chans = (char **) malloc(count_stas * sizeof(char*));
+.br
+	for (i = 0; i < count_stas; i++)
+.br
+		sta_chans[i] = (char *) malloc((len_stas + 1) * sizeof(char));
+.br
+	sprintf(format, "vs[%d]", count_stas);
+.br
+	get_stas = getarg("channel", format, sta_chans);
+.br
+	if (count_stas != get_stas)
+.br
+		/* error */
+.br
+
+.br
+	/* get the remaining arguments */
+.br
+	getarg("orid", "d", &orid);
+.br
+	getarg("dbtemp", "s", dbtemp);
+.br
+
+.br
+	endarg(); /* deactivate getarg package */
+.br
+
+.br
+	/* rest of subroutine */
+.br
+   }
+.PP
+An example call to this subroutine would be
+.IP "" 5
+get_msg("dbtemp='demo/demo' orid=721 channel-time=240.0,480.0 channel='ARA/sz','ARA/bz')
+.SH PARAMETER FORMAT
+The parameters in the strings can occur in any order, and any number
+of times.  In the case of multiple specifications, the last one is
+used.  Any parameters that are not requested by
+.I getarg()
+are ignored.
+.PP
+Each specification is of the form 
+.I name=value.
+No embedded blanks are allowed on either side of the equals ("=")
+sign.  Character strings with white space are delimited with single
+(') or double (") quotes which are removed by
+.I getarg().
+To get a single or double quote in a string, precede it with a back-slash (\\).
+Vector arguments are separated by commas.  Vectors of strings are
+enclosed in single quotes separated by commas.  To get a single 
+quote, comma, or back-slash in a string argument, precede each with a 
+back-slash.  For example:
+.IP "" 5
+get_msg("vs_arg='The Dommermuth\\'s','619\\\\234-3153','San Diego\\, CA'");
+.PP
+The only exception to the
+.I name=value
+syntax is boolean variables which can simply be specified by
+.I name
+or
+.I noname
+to mean true or false respectively.
+.PP
+Repetition factors can be used to specify repeated values in vectors
+using the symbols
+.I x, X, and *
+interchangeably.  For example
+.I get_msg("ints=1,2x2,3,3*4,2X5")
+would yield a vector with nine elements:  1, 2, 2, 3, 4, 4, 4, 5, 5.
+Repetition factors cannot be used with vectors of strings.  
+.SH AVAILABILITY
+.B getarg
+routines are in the library
+.I /opt/util/lib/libget.a
+which can be loaded with
+.I -lget
+provided the
+.I -L/opt/util/lib
+path is specified.  The include file libget.h can be found in
+/opt/util/include.
+.SH "SEE ALSO"
+getpar(3)
+.SH DIAGNOSTICS
+The routines produce error messages on
+.I stderr
+and return -1 for the following trapped errors.
+.PP
+1.  
+.I  setarg()
+is not (properly) called.
+.br
+2.  The arglist to
+.I setarg()
+appears to be garbage.
+.br
+3.  
+.I  countarg(),
+.I  lenarg(),
+or
+.I getarg()
+are called before
+.I setarg().
+.br
+4.  
+.I  countarg(),
+.I lenarg(),
+or
+.I getarg()
+are called after
+.I endarg().
+.br
+5.  There is an unknown conversion type in
+.I countarg()
+or
+.I getarg().
+.br
+6.  Attempt to process a vector of strings in
+.I fgtarg_().
+.br
+7.  Invalid vector limit is specified in
+.I getarg().
+.br
+8.  Invalid vector repetition factor is specified in
+.I getarg().
+.br
+9.  A NULL
+.I pointer
+parameter is passed to
+.I getarg().
+.PP
+An attempt is made to report which subroutine was active when the error occurred.
+.SH BUGS
+Probably.
+.SH AUTHOR
+Robert W. Clayton, Seismological Laboratory, Caltech, Pasadena, CA
+91125
+.br
+Cynde K. Smith, Science Applications International Corp., San Diego,
+CA  92121

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/man/man3/getpar.3
===================================================================
--- SwiftApps/Cybershake/app/post/Getpar/getpar/man/man3/getpar.3	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Getpar/getpar/man/man3/getpar.3	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,402 @@
+.\" @(#)getpar.3	56.1 10/25/93
+.TH GETPAR 3 
+.SH NAME
+setpar, getpar, mstpar, endpar \- retrieve command-line arguments
+.SH SYNOPSIS 
+#include "libget.h"
+.PP
+.B void setpar(int argc, char **argv)
+.PP
+.B int getpar(char *name, char *type,
+.B void *pointer)
+.br
+.B (char/int/float/double) *pointer
+.PP
+.B int mstpar(char *name, char *type,
+.B void *pointer)
+.br
+.B (char/int/float/double) *pointer
+.PP
+.B void endpar(void)
+.PP
+.B char *getspar(char *name, char *defvalue)
+.PP
+.B char *mstspar(char *name)
+.PP
+.B int getbpar(char *name, int defvalue)
+.PP
+.B int getdpar(char *name, int defvalue)
+.PP
+.B float getfpar(char *name, float defvalue)
+.PP
+.B double getffpar(char *name, double defvalue)
+.PP
+The declaration for the argument
+.B pointer
+depends on
+.B type.
+.SH DESCRIPTION
+The
+.I getpar
+routines provide a simple method to parse program arguments from
+the command line, and from files.
+Their use illustrated in the following example:
+.IP "" 10
+main(int ac, char **av)
+.br
+   {
+.br
+	/* specify parameters, some with default values */
+.br
+	static int nx =10;
+.br
+	static char title[40] = "No title given";
+.br
+	static float dx = 0.01;
+.br
+	static char input[40];
+.br
+	static float x[8];
+.br
+	static int boo = 1;	/* boolean, true */
+
+.br
+	setpar(ac,av);			 /* initialize getpar */
+.br
+	getpar("nx","d",&nx);
+.br
+	getpar("dx","f",&dx);
+.br
+	getpar("title","s",title);
+.br
+	mstpar("input","s",input); /* must have this parameter */
+.br
+	getpar("boo","b",&boo);
+.br
+	getpar("x","vf[8]",x);
+.br
+	endpar();		 /* deactivate getpar */
+.br
+
+.br
+	/* rest of program */
+.br
+   }
+.PP
+The routine
+.I setpar
+initializes the package.
+Its arguments are the same as those to main itself.
+It is an error to not call
+.I setpar
+before any other getpar calls.
+The
+.I getpar
+routines are deactivated with a call to
+.I endpar.
+This routine releases memory, and allows the
+.B STOP
+option mentioned below to happen.
+.PP
+The individual parameters are obtained with calls to
+.I getpar
+and
+.I mstpar.
+.I Mstpar
+(must par) is identical to
+.I getpar
+except that it terminates the program with an error message
+if the particular parameter is not specified.
+The following description of
+.I getpar
+also applies to
+.I mstpar.
+.PP
+.I Getpar
+has three parameters.
+The first is a character string which specifies the external name
+of the parameter.
+It can be (practically speaking) of any length.
+The second parameter is a character string which specifies the type
+of variable the parameter is.
+Currently the following types are understood:
+.IP "" 15
+"d"	integer
+.br
+"f"	float
+.br
+"F"	double
+.br
+"s"	character string
+.br
+"b"	boolean (integer)
+.br
+"vd"	integer vector
+.br
+"vf"	float vector
+.br
+"vF"	double vector
+.PP
+The \fItype\fR parameter can be used to indicate the maximum number
+of elements allowable in vectors.
+For example \fItype="vf[4]"\fR or \fItype="vf(4)"\fR would
+cause \fIgetpar\fR to modify no more than 4 elements of the vector,
+regardless of how many elements the user specifies.
+If no limit is specified, a limit of 10 is quietly enforced.
+.PP
+The last parameter is a pointer to the type of variable indicated by
+.I type.
+.I Getpar
+does not modify this variable if no occurrence of the parameter is found.
+Hence, a default value can be assigned before the call to
+.I getpar.
+.I Getpar
+returns 1 the parameter was found, and 0 if not.
+For vectors,
+.I getpar
+returns the number of elements found.
+.PP
+.I Getspar 
+and 
+.I mstspar 
+work similarly to 
+.I getpar 
+and 
+.I mstpar 
+for string parameters, except that the returned value is a pointer to a string
+that contains the parameter value.  The input parameter value is
+copied to a new string using strdup(3).
+In 
+.I getspar
+the input arguments include the
+parameter name and a default value, which can be a NULL string.  The 
+NULL pointer is returned if the default value is a NULL pointer and
+no parameter was found.  
+.I Mstspar
+requires that the parameter be found, hence no defaults are permitted.
+.PP
+.I Getbpar, getdpar, getfpar 
+and 
+.I getffpar 
+work similarly to 
+.I getpar 
+for 
+boolean, integer, float and double parameters, respectively except that 
+the returned value contains the default value and is of type boolean, 
+integer, float or double as requested.
+The input arguments for these functions include the
+parameter name and a default value.
+.SH PARAMETER FORMAT
+.PP
+The parameters on the command line can occur in any order,
+and any number of times.
+In the case of multiple specifications, the last one is used.
+Any parameters that are not requested by
+.I getpar
+or
+.I mstpar
+are ignored.
+An example of specifying parameters for the above program is:
+.IP "" 10
+a.out dx=0.123  nx=300 title="sample title"  dy=0.456 noboo x=1.0,4x2.0,2x5.12
+.PP
+Each specification is of the form
+.I name=value.
+No embedded blanks are allowed on either side of the equals ("=") sign.
+Character strings with blanks or tabs are delimited with single (') or
+double (") quotes.
+The only exceptions to the
+.I name=value
+rule are boolean variables which are specified as
+.I name
+or
+.I noname
+to indicate true or false.
+Boolean variables may also be specified as integers with the form
+.I name=(int).
+In the above example, true values for
+.I boo
+are specified as either
+.I boo
+or
+.I boo=1,
+and false values as either
+.I noboo
+or
+.I boo=0.
+If
+.I boo=100
+is given then the returned value is
+.I 100.
+The value for vector is given as a list separated by commas (,).
+No embedded blanks are allowed in the list.
+Repetition factors (2x and 4x in the above example) can be used to
+specify repeated values.
+.PP
+Several additional features are also available.
+At any point on the command line, the parameter
+.I par=filename
+can be given.
+This will cause
+.I getpar
+to look in the file
+.I filename
+for additional parameters.
+Several
+.I par
+arguments can be given on the command line.
+The search order is left to right.
+Consequently, any parameters given after the
+.I par=filename
+will override their values given in
+.I filename.
+Also, the environment (if allowed, see NOENV option below) is searched first.
+Thus parameters on the command line and in par files override parameters
+set in the environment.
+The format of the parameters in the par file follow the same rules as the
+command line.
+Several specifications separated by while space, can occur on a given
+line, and their can be any number of lines.
+A '#' symbol in the position where a name would normally occur,
+indicates that the rest of the line is a comment, and is consequently
+ignored.
+The specification
+.I par=filename
+is also allow in the file, however recursions are limited in depth
+(current limit is 4).
+.PP
+As a concession to the traditional switch passing method, a parameter
+of the form
+.IP "" 10
+a.out -abc
+.PP
+is available to the calling program as a character string with the call
+.IP "" 10
+getpar("SWITCH","s",&sw);
+.PP
+where in the example above, the string
+.I sw
+would be
+.I abc.
+.PP
+Parameters in the shell environment can be set (unset) with the
+C-shell commands:
+.IP "" 10
+setenv name value
+.IP "" 10
+unsetenv name
+.PP
+The parameters in the environment can be printed with the command
+.IP "" 10
+printenv
+.PP
+Five additional parameters allow for input checking, and program
+interrogation.
+.TP 10
+.B STOP
+The call to
+.I endpar
+will terminate the program if this parameter is given.
+.TP 10
+.B LIST
+Each call to
+.I getpar
+or
+.I mstpar
+will cause the name, type, and value of the variable to be
+listed on
+.I stderr.
+If
+.I LIST=filename
+is given, the listing is put in the file
+.I filename.
+This option is useful for interrogating a program as to what it wants
+for input.
+.TP 10
+.B INPUT
+.I Setpar
+will list all input parameters that are found.
+This option is useful for debugging input data, and determining
+where a particular parameter is coming from in multiple
+.I par
+specifications.
+If
+.I INPUT=filename
+is given, the listing is put in the file
+.I filename.
+.TP 10
+.B NOENV
+will disallow any parameters to be obtained from the environment.
+It may occur on the command line, in a par file, or in the environment
+itself.
+.TP 10
+.B VERBOSE
+will cause
+.I getpar/mstpar
+to print the name of the parameter before starting to search for it.
+This provides a quick method of determining which subroutine call is
+at fault, when a program dies in the getpar package.
+.PP 
+Limited parameter substitution is supported.  An example of the syntax is
+.TP 10
+.I dir=/usr/local/lib
+.TP 10
+.I file=filename
+.TP 10
+.I path=$(dir)/$(path)
+Parameter substitution occurs during parameter input.  Whenever a
+parameter to be substituted is encountered during input, the list of
+previously defined parameters (including the environment) are searched
+for the value and immediately substituted.  Thus, for the purpose of
+substitution, the ordering of parameter input is important.
+Substitution may be suppressed by escaping the "$" with a backslash (
+\\ ).  If a parameter value contains the name of an undefined parameter,
+it is simply removed from the parameter value.
+.SH AVAILABILITY
+The
+.I getpar
+routines are in the library
+.I /opt/util/lib/libget.a
+and may be loaded with
+.I -L/opt/util/lib -lget
+.SH "SEE ALSO"
+getarg(3)
+.SH WARNINGS
+Be careful that
+.I type
+is correctly specified, when dealing with floats and doubles.
+If a double pointer is used with \fItype="f"\fR,
+The lowest 32 bits of the mantissa will not be set correctly.
+If a float pointer and \fItype="F"\fR
+are used, the next element in memory will be clobbered.
+If the last combination is used in vector mode, you will get garbage back.
+.PP
+If a program appears to be behaving differently for identical input
+parameters, make sure that some defaulted parameters are not sneaking
+in via the environment.
+The NOENV option may be of some use in this case.
+If you believe back door parameters are a bad practice, then set NOENV in
+your login shell.
+.SH DIAGNOSTICS
+The routines produce error messages of the type:
+.br
+.br
+****** ERROR program[getpar]: ******
+.br
+	error message
+.br
+.br
+Hopefully the error message is diagnostic of the trouble.
+If you are debugging a program try the VERBOSE option to see which
+call generated the problem.
+.SH BUGS
+Errors in calls to
+.I mstpar
+are often reported as calls to
+.I getpar.
+.PP
+Parameter substitution might be more useful (but the program would
+be more complex) if the ordering requirements were relaxed.
+.SH AUTHOR
+Originally Robert W. Clayton, Seismological Laboratory, Caltech,
+Pasadena, CA 91125.  Now Blair Zajac has updated some of this stuff.

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/man/windex
===================================================================
--- SwiftApps/Cybershake/app/post/Getpar/getpar/man/windex	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Getpar/getpar/man/windex	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,2 @@
+getarg	routines (3)	-\ get arguments from a string .br
+setpar, getpar, mstpar, endpar (3)  - retrieve command-line arguments

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/src/Makefile
===================================================================
--- SwiftApps/Cybershake/app/post/Getpar/getpar/src/Makefile	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Getpar/getpar/src/Makefile	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,162 @@
+# Copyright 1990 Science Applications International Corporation
+#
+# Makefile for libget library.
+#		cloned from Makefile.lib
+# SccsId:  @(#)Makefile	56.1	10/25/93	Copyright 1990 Science Applications International Corporation
+#
+ 
+CSRCS		= defpar.c \
+		  getpar.c \
+		  getarg.c \
+		  getlocation.c
+
+COBJS		= defpar.o \
+		  getpar.o \
+		  getarg.o \
+		  getlocation.o
+
+FSRCS		= getpar.c \
+		  getarg.c
+
+FOBJS		= fgetpar.o \
+		  fgetarg.o
+
+PUBLIC_HDRS	= libget.h
+PRIVATE_HDRS	=
+
+CHDRS           = $(PUBLIC_HDRS) $(PRIVATE_HDRS)
+FHDRS		=
+HDRS		= $(CHDRS) $(FHDRS)
+
+MAKEFILE        = Makefile
+
+ALLSRCS         = $(CSRCS) $(MAKEFILE) $(HDRS) $(CHANGES) $(DOC)
+
+LIBS		= 
+STDLIBS		= 
+LIBRARY		= libget.a
+#FLIBRARY	= libfpar.a
+MAN1		=
+MAN3		= getpar.3 getarg.3
+CHANGES		= Changes.libget
+DOC		= $(MAN1) $(MAN3) $(CHANGES)
+SUBDIRS		= 
+INCLUDES	= 
+CFLAGS		= $O $(INCLUDES) -DENVIRONMENT
+FFLAGS		= $O
+LDFLAGS		= $O
+LFLAGS		= -bchu $(INCLUDES)
+
+DESTDIR		= ../../lib
+INCLDIR		= ../../include
+MAN1DIR		= ../../doc/man/man1
+MAN3DIR		= ../../doc/man/man3
+CHANGESDIR	= ../../doc/Changes
+
+include ../../../Compilers.mk
+CC		= $(MY_CC)
+F77		= $(MY_FC)
+O		= -xO3 -xdepend -xlibmil -fsimple
+O		= -O3
+#O		= -g
+LD		= $(CC)
+LINT		= lint
+YACC		= yacc
+LEX		= lex
+
+LMODE		= 664
+PMODE		= 775
+GROUP		= scm
+
+GET		= sccs get
+GFLAGS		= -s -r56.1
+SCCSGETFLAGS	= -s -r56.1
+SCLEAN		= sccs clean
+
+RM		= rm
+INSTALL		= install
+MAKE		= make
+PRINT		= lpr -p
+AR		= ar
+RANLIB		= ranlib
+MKDIR		= mkdir -p
+
+FLAGS		= $(MFLAGS) "CC=$(CC)" "F77=$(F77)" "O=$O" \
+		  "GET=$(GET)" "GFLAGS=$(GFLAGS)" "SCLEAN=$(SCLEAN)" \
+		  "LMODE=$(LMODE)" "PMODE=$(PMODE)" "GROUP=$(GROUP)" \
+		  "PRINT=$(PRINT)" "MAKE=$(MAKE)" "LDFLAGS=$(LDFLAGS)" \
+		  "PCC=$(PCC)"
+
+all:		$(LIBRARY)  $(MAN3)
+	rm -f ../lib/$(LIBRARY)
+	cp $(LIBRARY) ../lib
+
+$(COBJS) $(FOBJS): libget.h
+
+fgetpar.o:	getpar.c
+		cp getpar.c fgetpar.c
+		$(CC) $(CFLAGS) -DFORTRAN -c fgetpar.c
+		$(RM) -f fgetpar.c
+
+fgetarg.o:	getarg.c
+		cp getarg.c fgetarg.c
+		$(CC) $(CFLAGS) -DFORTRAN -c fgetarg.c
+		$(RM) -f fgetarg.c
+
+$(LIBRARY):	$(CHDRS) $(COBJS) $(FOBJS)
+		-$(RM) -f $(LIBRARY)
+		$(AR) cq $(LIBRARY) $(COBJS) $(FOBJS)
+		if [ -x /usr/bin/ranlib -o -x /bin/ranlib ]; then \
+			$(RANLIB) $(LIBRARY); \
+		fi
+
+#$(FLIBRARY):	$(FHDRS) $(FOBJS)
+#		-$(RM) -f $(FLIBRARY)
+#		$(AR) cq $(FLIBRARY) $(FOBJS)
+#		$(RANLIB) $(FLIBRARY)
+
+includes:	$(HDRS)
+		$(MKDIR) $(INCLDIR)
+		for i in $(PUBLIC_HDRS); do \
+			$(INSTALL) -m $(LMODE) -g $(GROUP) $$i $(INCLDIR);\
+		done
+
+install:	all $(DOC)
+		$(MKDIR) $(DESTDIR)
+		$(INSTALL) -m $(LMODE) -g $(GROUP) $(LIBRARY) \
+		$(DESTDIR)
+		if [ -x /usr/bin/ranlib -o -x /bin/ranlib ]; then \
+			$(RANLIB) $(DESTDIR)/$(LIBRARY); \
+		fi
+#			$(RANLIB) $(DESTDIR)/$(FLIBRARY); \
+#			Uncomment below as necessary.
+#		$(MKDIR) $(MAN1DIR)
+#		for i in $(MAN1); do \
+#			$(INSTALL) -m $(LMODE) -g $(GROUP) $$i $(MAN1DIR);\
+#		done
+		$(MKDIR) $(MAN3DIR)
+		for i in $(MAN3); do \
+			$(INSTALL) -m $(LMODE) -g $(GROUP) $$i $(MAN3DIR);\
+		done
+#		$(MKDIR) $(CHANGESDIR)
+#		for i in $(CHANGES); do \
+#			$(INSTALL) -m $(LMODE) -g $(GROUP) $$i $(CHANGESDIR);\
+#		done
+
+clean:
+		-$(RM) -f $(COBJS) $(FOBJS) libget.a core
+
+xclean:
+		-$(RM) -f $(COBJS) $(FOBJS) libget.a core
+		-$(RM) -f $(PROGRAM) $(LIBRARY) 
+		-$(SCLEAN)
+		
+lint:		$(CSRCS) $(HDRS) $(FSRCS)
+		$(LINT) $(LFLAGS) $(CSRCS) $(FSRCS)
+
+print:		$(CSRCS) $(HDRS) Makefile
+		$(PRINT) $(HDRS) Makefile
+
+sccs:
+		$(GET) $(GFLAGS) $(CSRCS) $(HDRS) $(DOC) Makefile
+

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/src/defpar.c
===================================================================
--- SwiftApps/Cybershake/app/post/Getpar/getpar/src/defpar.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Getpar/getpar/src/defpar.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,67 @@
+/*
+ * Copyright 1992 Science Applications International Corporation.
+ *
+ * NAME
+ *	getbpar()
+ *      getdpar()
+ *      getfpar()
+ *      getffpar()
+ * 
+ * FILE 
+ *	defpar.c
+ *
+ * SYNOPSIS
+ *      par->duration = getffpar ("duration", 200.0);
+ *	
+ * DESCRIPTION
+ *
+ * DIAGNOSTICS
+ *
+ * FILES
+ *
+ * NOTES
+ * 
+ * SEE ALSO
+ *
+ * AUTHOR
+ * 	Rick Jenkins  10/08/92
+ *
+ */
+
+#include "libget.h"
+
+int getbpar(char *parname, int defvalue)
+{
+	int parvalue = defvalue;
+	
+	getpar (parname, "b", &parvalue);
+
+	return (parvalue);
+}
+
+int getdpar(char *parname, int defvalue)
+{
+	int parvalue = defvalue;
+	
+	getpar (parname, "d", &parvalue);
+
+	return (parvalue);
+}
+
+float getfpar(char *parname, float defvalue)
+{
+	float parvalue = defvalue;
+	
+	getpar (parname, "f", &parvalue);
+
+	return (parvalue);
+}
+
+double getffpar(char *parname, double defvalue)
+{
+	double parvalue = defvalue;
+	
+	getpar (parname, "F", &parvalue);
+
+	return (parvalue);
+}

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/src/getarg.3
===================================================================
--- SwiftApps/Cybershake/app/post/Getpar/getpar/src/getarg.3	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Getpar/getpar/src/getarg.3	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,459 @@
+.\" @(#)getarg.3	56.1 10/25/93
+.nr Np 0 1
+.TH GETARG 3 "May 1991"
+.SH NAME
+.B getarg 
+routines -\ get arguments from a string
+.br
+.SH SYNOPSIS
+#include "libget.h"
+.PP
+.B void setarg(char *argstring, char *subname)
+.PP
+.B void setarg_(char *argstring, char *subname,
+.B int dum1, int dum2)
+.PP
+.B int countarg(char *name, char *type)
+.PP
+.B int cntarg_(char *name, char *type,
+.B int dum1, int dum2)
+.PP
+.B int lenarg(char *name)
+.PP
+.B int getarg(char *name, char *type,
+.B void *pointer)
+.PP
+.B fgtarg_(char *name, char *type,
+.B void *pointer, int dum1, int dum2, int lens)
+.PP
+.B void endarg(void)
+.PP
+.B void endarg_(void)
+.PP
+In the subroutines 
+.B getarg()
+and
+.B fgtarg_()
+the declaration for the argument
+.B pointer
+depends on the argument type
+.B type.
+.br
+.SH DESCRIPTION
+.br
+The
+.B getarg
+routines provide a simple procedure for passing optional arguments
+to subroutines and for parsing strings into data values.  The syntax
+of the functions and the format of the parameter specification
+is similar to
+.B getpar(3).
+.PP
+The subroutine
+.I setarg()
+initializes the
+.B getarg
+package, and it must be called before any other references to
+.B getarg.
+The two arguments to
+.I setarg() 
+are a character string containing optional arguments
+and a subroutine name (for error reporting).
+The pointer to either the character string or the subroutine name may be
+.I NULL
+but they cannot both be
+.I NULL.
+.PP
+The subroutine
+.I countarg()
+takes two arguments:
+.I name
+and
+.I type.
+.I Name
+is the external name of the variable initialized in
+.I setarg().
+.I Type
+specifies the variable type, one of 
+.I d, f, F, 
+or 
+.I s.
+.I Countarg
+counts the number of elements for the vector
+.I name.
+It is useful for ascertaining the vector limit
+for data retrieval via
+.I getarg().
+Upon successful completion,
+.I countarg()
+returns the number of elements for the parameter, or zero if there are no
+elements.
+.PP
+The subroutine
+.I lenarg()
+takes one argument:  
+.I name.
+.I Name
+is the external name of the variable initialized in
+.I setarg().
+.I Lenarg()
+determines the length of the longest element in the
+.I name
+vector.
+It is useful for ascertaining the memory space needed to
+accommodate the largest string in a character string vector.
+Upon successful completion,
+.I lenarg()
+returns a value guaranteed to be at least as large as the 
+length of the longest string argument.  It returns zero
+if there are no arguments.
+.PP
+The subroutine
+.I getarg()
+takes three arguments:
+.I name, type,
+and
+.I pointer.
+.I Name
+is the external name of the variable initialized in
+.I setarg().
+.I Type
+specifies the variable type.
+The currently valid types are:
+.IP "" 5
+"d"	integer
+.br
+"f"	float
+.br
+"F"	double
+.br
+"s"	character string
+.br
+"b"	boolean (integer)
+.br
+"vd"	integer vector
+.br
+"vf"	float vector
+.br
+"vF"	double vector
+.br
+"vs"	character string vector
+.PP
+The 
+.I type
+parameter can be expanded to indicate the maximum number of elements
+allowable in vectors.  For example type="vf[4]" or type="vf(4)"
+would cause
+.I getarg()
+to modify no more than 4 elements of the vector, regardless of how
+many elements are in the argument list
+initialized in
+.I setarg().
+If no limit is specified, a limit of 10 is quietly enforced.  If there 
+are fewer elements than the limit the vector will only be modified up
+to the number of elements.
+.PP
+.I Pointer
+is a pointer to the type of variable indicated by
+.I type.
+If no occurrences of the parameter
+.I name
+is found, the contents of
+.I pointer
+are not modified.
+.PP`
+.I Getarg()
+returns 1 for a successful conversion, and 0 if unsuccessful.  In the
+case of vectors
+.I getarg()
+returns the number of elements found, or 0 if an unsuccessful conversion
+occurs at any index in the vector.
+.PP
+The subroutine
+.I endarg()
+gracefully terminates the package.
+.PP
+The Fortran interface subroutines
+.I setarg_()
+,
+.I cntarg_()
+,
+.I fgtarg_()
+and
+.I endarg_()
+are equivalent with the exception that 
+.I fgtarg_() 
+does not process vectors of character strings.  Also, there is no
+Fortran equivalent for
+.I lenarg().
+.PP
+The following program example illustrates the use of 
+.B getarg
+for the purpose of parsing optional subroutine arguments.
+It is intended for use with subroutines that have a few essential
+arguments and many optional ones.
+.IP "" 5
+sub(x,lx,list)
+.br
+float *x;
+.br
+int lx; 
+.br
+char *list;
+.br
+   {
+.br
+	int opt1, boo;
+.br
+	float fopt2;
+.br
+	char title[40];
+.br
+
+.br
+	/* set defaults */
+.br
+	opt1= 10;
+.br
+	fopt2= 5.0;
+.br
+	title[0]= '\0';
+.br
+	boo= 1;	/* true */
+.br
+
+.br
+	setarg(list,"sub");	/* initialize getarg package */
+.br
+	getarg("opt1","d",&opt1);
+.br
+	getarg("fopt2","f",&fopt2);
+.br
+	getarg("title","s",title);
+.br
+	getarg("boo","b",&boo);
+.br
+	endarg();		/* deactivate getarg package */
+.br
+
+.br
+	/* rest of subroutine */
+.br
+   }
+.PP
+The minimal call to this subroutine would be
+.IP "" 5
+sub(x,lx,0);
+.br
+.ti 0
+or
+.br
+sub(x,lx,"");
+.PP
+in which case the default values of all the options are used.
+To change some of the options, the call would be
+.IP "" 5
+sub(x,lx,"opt1=100 fopt2=2.0 title='new title' noboo");
+.br
+.PP
+.B NOTE:
+If the variables are defaulted by giving them initializations in
+static declarations,
+then subsequent calls to subroutines that use
+.B getarg
+may have their default values modified by previous calls.
+.PP
+The next program example illustrates the use of
+.B getarg 
+for the purpose of parsing a string argument into data values.
+.IP "" 5
+get_msg(list)
+.br
+char *list;
+.br
+   {
+.br
+	double *time;
+.br
+	char **sta_chans, dbtemp[BUFSIZ], format[BUFSIZ];
+.br
+	int orid, count_times, count_stas;
+.br
+	int get_times, get_stas, len_stas;
+.br
+
+.br
+	setarg(list, NULL); /* initialize getarg package */
+.br
+
+.br
+	count_times = countarg("channel-time", "F");  /* determine size of double vector */
+.br
+	time = (double *) malloc(count_times * sizeof(double)); /* create space */
+.br
+	sprintf(format, "vF[%d]", count_times); /* format the type parameter */
+.br
+	get_times = getarg("channel-time", format, time);  /* retrieve the data */
+.br
+	if (count_times != get_times)
+.br
+	  	/* error */
+.br
+
+.br
+	/*
+.br
+	 * For the string vector ascertain the number of elements and
+.br
+	 * the length of the longest element in the vector channel.
+.br
+	 * Malloc the appropriate amount of memory space before calling
+.br
+	 * getarg().
+.br
+	 */
+.br
+	count_stas = countarg("channel", "s");
+.br
+	len_stas = lenarg("channel");
+.br
+	sta_chans = (char **) malloc(count_stas * sizeof(char*));
+.br
+	for (i = 0; i < count_stas; i++)
+.br
+		sta_chans[i] = (char *) malloc((len_stas + 1) * sizeof(char));
+.br
+	sprintf(format, "vs[%d]", count_stas);
+.br
+	get_stas = getarg("channel", format, sta_chans);
+.br
+	if (count_stas != get_stas)
+.br
+		/* error */
+.br
+
+.br
+	/* get the remaining arguments */
+.br
+	getarg("orid", "d", &orid);
+.br
+	getarg("dbtemp", "s", dbtemp);
+.br
+
+.br
+	endarg(); /* deactivate getarg package */
+.br
+
+.br
+	/* rest of subroutine */
+.br
+   }
+.PP
+An example call to this subroutine would be
+.IP "" 5
+get_msg("dbtemp='demo/demo' orid=721 channel-time=240.0,480.0 channel='ARA/sz','ARA/bz')
+.SH PARAMETER FORMAT
+The parameters in the strings can occur in any order, and any number
+of times.  In the case of multiple specifications, the last one is
+used.  Any parameters that are not requested by
+.I getarg()
+are ignored.
+.PP
+Each specification is of the form 
+.I name=value.
+No embedded blanks are allowed on either side of the equals ("=")
+sign.  Character strings with white space are delimited with single
+(') or double (") quotes which are removed by
+.I getarg().
+To get a single or double quote in a string, precede it with a back-slash (\\).
+Vector arguments are separated by commas.  Vectors of strings are
+enclosed in single quotes separated by commas.  To get a single 
+quote, comma, or back-slash in a string argument, precede each with a 
+back-slash.  For example:
+.IP "" 5
+get_msg("vs_arg='The Dommermuth\\'s','619\\\\234-3153','San Diego\\, CA'");
+.PP
+The only exception to the
+.I name=value
+syntax is boolean variables which can simply be specified by
+.I name
+or
+.I noname
+to mean true or false respectively.
+.PP
+Repetition factors can be used to specify repeated values in vectors
+using the symbols
+.I x, X, and *
+interchangeably.  For example
+.I get_msg("ints=1,2x2,3,3*4,2X5")
+would yield a vector with nine elements:  1, 2, 2, 3, 4, 4, 4, 5, 5.
+Repetition factors cannot be used with vectors of strings.  
+.SH AVAILABILITY
+.B getarg
+routines are in the library
+.I /opt/util/lib/libget.a
+which can be loaded with
+.I -lget
+provided the
+.I -L/opt/util/lib
+path is specified.  The include file libget.h can be found in
+/opt/util/include.
+.SH "SEE ALSO"
+getpar(3)
+.SH DIAGNOSTICS
+The routines produce error messages on
+.I stderr
+and return -1 for the following trapped errors.
+.PP
+1.  
+.I  setarg()
+is not (properly) called.
+.br
+2.  The arglist to
+.I setarg()
+appears to be garbage.
+.br
+3.  
+.I  countarg(),
+.I  lenarg(),
+or
+.I getarg()
+are called before
+.I setarg().
+.br
+4.  
+.I  countarg(),
+.I lenarg(),
+or
+.I getarg()
+are called after
+.I endarg().
+.br
+5.  There is an unknown conversion type in
+.I countarg()
+or
+.I getarg().
+.br
+6.  Attempt to process a vector of strings in
+.I fgtarg_().
+.br
+7.  Invalid vector limit is specified in
+.I getarg().
+.br
+8.  Invalid vector repetition factor is specified in
+.I getarg().
+.br
+9.  A NULL
+.I pointer
+parameter is passed to
+.I getarg().
+.PP
+An attempt is made to report which subroutine was active when the error occurred.
+.SH BUGS
+Probably.
+.SH AUTHOR
+Robert W. Clayton, Seismological Laboratory, Caltech, Pasadena, CA
+91125
+.br
+Cynde K. Smith, Science Applications International Corp., San Diego,
+CA  92121

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/src/getarg.c
===================================================================
--- SwiftApps/Cybershake/app/post/Getpar/getpar/src/getarg.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Getpar/getpar/src/getarg.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,712 @@
+/* 
+ * NAME
+ *	getarg
+ *
+ * DESCRIPTION
+ *	get subroutine arguments from a string.  Acquired from Caltech.
+ *
+ *	See getarg.3 for details.
+ *
+ * AUTHOR
+ * copyright (c) Robert W. Clayton
+ *		 Seismological Laboratory
+ *		 Caltech
+ *		 Pasadena, CA 91125
+ *
+ * 24 Jul 1991  J Given         Added function getsarg() for dynamic
+ *                              string allocation
+ *
+ * 25 Apr 1991	Cynde K. Smith	Added vector of string capability for C
+ *			       	version only.
+ * 26 Apr 1991	Cynde K. Smith  Replaced calls to atof and atoi with
+ *			       	strtod and strtol to allow error checking.
+ * 09 May 1991  Cynde K. Smith  Added countarg() and cntarg_() subroutines.
+ * 14 May 1991  Cynde K. Smith  Added lenarg() subroutine.
+ * 
+ * Getarg routines:
+ *
+ * Externally visable routines:
+ *
+ *		setarg(argc,argv)
+ *		countarg(name,type)
+ *		lenarg(name)
+ *		getarg(name,type,valptr)
+ *		endarg()
+ *
+ * To get C-version:
+ *		cc -c getarg.c
+ *
+ * To get F77-version:
+ *		cp getarg.c fgetarg.c
+ *		cc -c -DFORTRAN fgetarg.c
+ *		rm fgetarg.c
+ *
+ *SccsId: @(#)getarg.c	56.1 10/25/93
+ */
+#include	<stdio.h>
+#include	<stdlib.h>
+#include	<stdarg.h>
+/*
+#ifndef hpux 
+#include	<floatingpoint.h>
+#endif
+*/
+#include	<string.h>
+#include	"libget.h"
+
+#define MAXNAME		256	/* max length of name */
+#define MAXVALUE	5120	/* max length of value */
+#define MAXVECTOR	20	/* max # of elements for unspecified vectors */
+#define GETARG_ERROR	-1	/* error status for getarg error */
+
+#define INIT	 1	/* bits for FLAGS (ext_arg.argflags) */
+#define END_PAR	 2
+
+#define LISTINC		32	/* increment size for arglist */
+#define BUFINC		1024	/* increment size for argbuf */
+
+struct arglist		/* structure of list set up by setarg */
+   {
+	char *argname;
+	char *argval;
+	int hash;
+   };
+struct ext_arg		/* global variables for getarg */
+   {
+	char *progname;
+	int argflags;
+	struct arglist *arglist;
+	struct arglist *arghead;
+	char *argbuf;
+	int nlist;
+	int nbuf;
+	int listmax;
+	int bufmax;
+   }	ext_arg;
+
+/* abbreviations: */
+#define AL 		struct arglist
+#define PROGNAME	ext_arg.progname
+#define FLAGS		ext_arg.argflags
+#define ARGLIST		ext_arg.arglist
+#define ARGHEAD		ext_arg.arghead
+#define ARGBUF		ext_arg.argbuf
+#define NLIST		ext_arg.nlist
+#define NBUF		ext_arg.nbuf
+#define LISTMAX		ext_arg.listmax
+#define BUFMAX		ext_arg.bufmax
+
+static int ga_add_entry(char *name, char *value);
+static int ga_getarg_err(char *subname, char *format, ...);
+static int ga_compute_hash(char *s);
+static int ga_getvector(char *list, char *type, void *val);
+
+void
+#ifdef FORTRAN
+setarg_(char *list, char *subname, int dum1, int dum2)
+#else
+setarg(char *list, char *subname)
+#endif
+   {
+	register char *pl, *pn, *pv;
+	register i;
+	int      lenlist;
+	char t, name[MAXNAME], value[MAXVALUE];
+	
+
+	PROGNAME= subname;
+	FLAGS= INIT;
+
+	ARGLIST = NULL;
+	ARGBUF = NULL;
+	NLIST= NBUF= LISTMAX= BUFMAX= 0;
+
+#ifdef 	FORTRAN
+	lenlist = dum1;
+#else
+	lenlist = strlen(list);
+#endif	
+	if(lenlist == 0) return;
+	if(list == NULL) return;
+
+	pl= list;
+	/* loop over entries on each line */
+
+	for(i=0; i<lenlist && *pl != '\0'; i++)
+	{
+		while(*pl==' ' || *pl=='\t') pl++;
+		if(*pl=='\0'|| *pl=='\n') continue;
+		
+		/* get name */
+		pn= name;
+		while(*pl != '=' && *pl != '\0' && *pl != ' '
+		      && *pl != '\t') *pn++ = *pl++;
+		*pn = '\0';
+		if(*pl == '=') pl++;
+
+
+		/* get value */
+
+		*value= '\0';
+		pv= value;
+		if(*pl == '\"' || *pl == '\'')
+		{
+			t = *pl++;
+			while(*pl != '\0')
+			{
+				if(*pl == t)
+				{
+					   if (pl[-1] != '\\' &&
+					       (pl[1] == ' ' || pl[1] == '\0'))
+					     {
+					       pl++;
+					       break;
+					     }
+				}
+				*pv++ = *pl++;
+			}
+		}
+		else	
+		{
+			while(*pl && *pl != ' ' && *pl != '\t') 
+				*pv++ = *pl++;
+		}
+		
+		*pv= '\0';
+		if (ga_add_entry(name,value) == GETARG_ERROR)
+		    return;
+	}
+}
+
+/* add an entry to arglist, expanding memory if necessary */
+int ga_add_entry(char *name, char *value)
+   {
+	struct arglist *alptr;
+	int len;
+	register char *ptr;
+
+	/*fprintf(stderr,"getarg: adding %s (%s)\n",name,value);*/
+	/* check arglist memory */
+	if(NLIST >= LISTMAX)
+	   {
+		LISTMAX += LISTINC;
+		if(ARGLIST == NULL)
+			ARGLIST= (AL *)malloc(LISTMAX * sizeof(AL));
+		 else	ARGLIST= (AL *)realloc(ARGLIST,LISTMAX * sizeof(AL));
+	   }
+	/* check argbuf memory */
+	len= strlen(name) + strlen(value) + 2; /* +2 for terminating nulls */
+	if(NBUF+len >= BUFMAX)
+	   {
+		BUFMAX += BUFINC;
+		if(ARGBUF == NULL)
+			ARGBUF= (char *)malloc(BUFMAX);
+		 else	ARGBUF= (char *)realloc(ARGBUF,BUFMAX);
+	   }
+	if(ARGBUF == NULL || ARGLIST == NULL)
+		return ga_getarg_err("setarg","cannot allocate memory");
+
+	/* add name */
+	alptr= ARGLIST + NLIST;
+	alptr->hash= ga_compute_hash(name);
+	ptr= alptr->argname= ARGBUF + NBUF;
+	do *ptr++ = *name; while(*name++);
+
+	/* add value */
+	NBUF += len;
+	alptr->argval= ptr;
+	do *ptr++ = *value; while(*value++);
+	NLIST++;
+	return 0;
+   }
+
+void 
+#ifdef FORTRAN
+endarg_()
+#else
+endarg(void) /* free arglist & argbuf memory, & process STOP command */
+#endif
+   {
+	if(ARGLIST != NULL) free(ARGLIST);
+	if(ARGBUF  != NULL) free(ARGBUF);
+	ARGBUF=  NULL;
+	ARGLIST= NULL;
+	FLAGS= END_PAR;	/* this stops further getarg calls */
+   }
+
+
+/* count the number of arguments for a particular parameter name */
+
+int
+#ifdef FORTRAN
+cntarg_(char *name, char *type, int dum1, int dum2)
+#else
+countarg(char *name, char *type)
+#endif
+{
+	int 	found, h;
+	char 	*str, *ptr;
+	register struct arglist *alptr;
+	
+	if (FLAGS & END_PAR)
+	{
+		return ga_getarg_err("countarg","called after endarg");
+	}
+	
+	if ((FLAGS & INIT) == 0)
+	{
+		return ga_getarg_err("countarg","not initialized with setarg");
+	}
+	
+
+	if (NLIST == 0 || ARGLIST == NULL) 
+	{
+		return (0);
+	}
+	
+
+	found=0;
+
+	h = ga_compute_hash(name);
+
+	/*  
+	 *  if list is NULL then return NOW; the following "for" loop
+	 *  the pointer ARGLIST + (NLIST-1) gives ARGLIST -1 which
+	 *  does not test to < ARGHEAD for some reason
+         */
+	
+	if (NLIST <= 0)
+	{ 
+		return (0);
+	}
+	
+
+	/* search list backwards, stopping at first find */
+	for (alptr = ARGLIST +(NLIST-1); alptr >= ARGLIST; alptr--)
+	{
+		if (alptr->hash != h) 
+			continue;
+		if (strcmp(alptr->argname, name) != 0) 
+			continue;
+		str = alptr->argval;
+		ptr = str;
+		
+		switch (*type)
+		{
+	       	case 'd':
+		case 'f':
+		case 'F':
+			/*
+			 * Count the number of commas to detemine list
+			 * size.  If the str isn't NULL than there
+			 * is at least one element and at least one
+			 * more than there are commas.
+			 */
+			while ((ptr = strchr(ptr, ',')) != NULL)
+			{
+					found++;
+					ptr++;
+			}
+			if (str != NULL)
+				found++;
+			break;
+	       	case 's':
+			while ((ptr = strchr(ptr, ',')) != NULL)
+			{
+				if (ptr[-1] != '\\')
+					found++;
+				ptr++;
+			}
+			if (str != NULL)
+				found++;
+			break;
+	       	default:
+		       	return ga_getarg_err("countarg",
+		       		      "unknown conversion type %s",type);
+		       	break;
+		}
+		break;
+	}
+	return (found);
+}	
+
+int lenarg(char *name)
+{
+	int 	h, len, new_len;
+	char 	*str, *ptr1, *ptr2;
+	register struct arglist *alptr;
+	
+	if (FLAGS & END_PAR)
+	{
+		return ga_getarg_err("lenarg","called after endarg");
+	}
+	
+	if ((FLAGS & INIT) == 0)
+	{
+		return ga_getarg_err("lenarg","not initialized with setarg");
+	}
+
+	if (NLIST == 0 || ARGLIST == NULL) 
+	{
+		return (0);
+	}
+	
+
+	h = ga_compute_hash(name);
+
+	/*  
+	 *  if list is NULL then return NOW; in the following "for"
+	 *  loop the pointer ARGLIST + (NLIST-1) gives ARGLIST -1
+	 *  which does not test to < ARGHEAD for some reason
+         */
+	
+	if (NLIST <= 0)
+	{ 
+		return (0);
+	}
+	
+
+	/* search list backwards, stopping at first find */
+	for (alptr = ARGLIST +(NLIST-1); alptr >= ARGLIST; alptr--)
+	{
+		if (alptr->hash != h) 
+			continue;
+		if (strcmp(alptr->argname, name) != 0) 
+			continue;
+		str = alptr->argval;
+		ptr1 = str;
+		len = new_len = 0;
+	       	while ((ptr2 = strchr(ptr1, ',')) != NULL)
+	       	{
+	       		new_len += ptr2 - ptr1;
+			if (ptr2[-1] != '\\')
+			{
+				if (new_len > len)
+					len = new_len;
+				new_len = 0;
+			}
+			ptr2++;
+			ptr1 = ptr2;
+		}
+			
+		if (ptr1)
+			new_len = strlen(ptr1);
+		if (new_len > len)
+			len = new_len;
+		
+		break;
+	}
+	return (len);
+}	
+
+
+
+int
+#ifdef FORTRAN
+fgtarg_(char *name, char *type, void *val, int dum1, int dum2, int lens)
+/* dum1 & dum2 are extra args that fortran puts in */
+#else
+getarg(char *name, char *type, void *val)
+#endif
+   {
+	register char *sptr;
+	register struct arglist *alptr;
+	double *dbl;
+	float *flt;
+	int *intr;
+	int h, hno, hyes, found;
+	char noname[MAXNAME+2], *str, *ptr;
+
+	/*fprintf(stderr,"looking for %s, type=%s\n",name,type);*/
+	if(FLAGS & END_PAR)
+		return ga_getarg_err("getarg","called after endarg");
+	if( (FLAGS & INIT) == 0)
+		return ga_getarg_err("getarg","not initialized with setarg");
+	if (val == NULL)
+		return ga_getarg_err("getarg", "NULL pointer value");
+	
+	if(NLIST == 0 || ARGLIST == NULL) return(0);
+
+	/* The following line corrects a common input error */
+	if(type[1]=='v') { type[1]= type[0]; type[0]='v'; }
+
+	found=0;
+
+	if(*type == 'b') goto boolean;
+
+	h= ga_compute_hash(name);
+
+	/*  
+	 *  if list is NULL then return NOW; the following "for" loop
+	 *  the pointer ARGLIST + (NLIST-1) gives ARGLIST -1 which
+	 *  does not test to < ARGHEAD for some reason
+         */
+	
+	if(NLIST <= 0) return(found);
+
+
+	/* search list backwards, stopping at first find */
+	for(alptr= ARGLIST +(NLIST-1); alptr >= ARGLIST; alptr--)
+	   {
+		/*fprintf(stderr,"getarg: checking %s\n",alptr->argname);*/
+		if(alptr->hash != h) continue;
+		if(strcmp(alptr->argname,name) != 0) continue;
+		str= alptr->argval;
+		switch(*type)
+		   {
+			case 'd':
+			        intr= (int *) val;
+				*intr= (int) strtol(str, &ptr, 0);
+				if (ptr == str)
+					found = 0;
+				else
+					found = 1;
+				break;
+			case 'f':
+				flt= (float *) val;
+				*flt= (float) strtod(str, &ptr);
+				if (ptr == str)
+					found = 0;
+				else
+					found = 1;
+				break;
+			case 'F':
+				dbl= (double *) val;
+				*dbl= strtod(str, &ptr);
+				if (ptr == str)
+					found = 0;
+				else
+					found = 1;
+				break;
+			case 's':
+                                sptr= (char *) val;
+                                while(*str) *sptr++ = *str++;
+#ifdef FORTRAN
+				while(sptr < (((char *)val)+lens)) 
+					*sptr++ = ' ';
+#else
+                                *sptr= '\0';
+#endif
+                                found=1;
+                                break;
+			case 'v':
+/* 
+ *  For now, it's an error to get a Fortran vector of strings,
+ *  If ga_getvector returns an error, stop processing and
+ *  return GETARG_ERROR (-1)
+ */
+
+#ifdef FORTRAN
+				if (type[1] == 's')
+					return ga_getarg_err("getarg",
+							"fortran string vector");
+				else
+					if ((found = ga_getvector(str, type, val))
+					    == GETARG_ERROR)
+						return found;
+#else
+				if ((found = ga_getvector(str,type,val)) ==
+				    GETARG_ERROR)
+					return found;
+#endif
+				break;
+			default:
+				return ga_getarg_err("getarg",
+					"unknown conversion type %s",type);
+				break;
+		   }
+		break;
+	   }
+	return(found);
+boolean:
+
+	/*  
+	 *  if list is NULL then return NOW; the following "for" loop
+	 *  the pointer ARGLIST + (NLIST-1) gives ARGLIST -1 which
+	 *  does not test to < ARGHEAD for some reason
+         */
+	
+	if(NLIST <= 0) return(found);
+
+	sprintf(noname,"no%s",name);
+	hno = ga_compute_hash(noname);
+	hyes= ga_compute_hash(  name);
+	found=0;
+	/* search list backwards, stopping at first find */
+	for(alptr= ARGLIST +(NLIST-1); alptr >= ARGLIST; alptr--)
+	   {
+		if(alptr->hash != hno && alptr->hash != hyes) continue;
+		if(strcmp(alptr->argname,  name)== 0)
+		   {
+			if(alptr->argval[0] == '\0')
+			  *( (int *) val)= 1;
+			else
+			  *( (int *) val)= atol(alptr->argval);
+			found++;
+			break;
+		   }
+		if(strcmp(alptr->argname,noname)== 0)
+		   {	*( (int *) val)= 0; found++; break; }
+	   }
+	return(found);
+   }
+
+int ga_compute_hash(char *s)
+   {
+	register int h;
+	h= s[0];
+	if(s[1]) h |= (s[1])<<8;	else return(h);
+	if(s[2]) h |= (s[2])<<16;	else return(h);
+	if(s[3]) h |= (s[3])<<24;
+	return(h);
+   }
+
+int ga_getvector(char *list, char *type, void *val)
+   {
+	register char *p;
+	register int index, cnt;
+	char *valptr, **strptr, *svalptr, sval[MAXVALUE], *ptr;
+	int limit;
+	int ival, *iptr;
+	float fval, *fptr;
+	double dval, *dptr;
+
+	limit= MAXVECTOR;
+	if(type[2] == '(' || type[2] == '[') limit= atol(&type[3]);
+	if(limit <= 0)
+		return ga_getarg_err("getarg","bad limit=%d specified",limit);
+	/*fprintf(stderr,"limit=%d\n",limit);*/
+	index= 0;
+	p= list;
+	while(*p != '\0'  && index < limit)
+	   {
+		cnt=1;
+	 backup: /* return to here if we find a repetition factor */
+		while(*p == ' ' || *p == '\t') p++;
+		if(*p == '\0') return(index);
+		valptr= p;
+	getvalue: /* return here if valid value in char*[] arg */
+		while( *p != ',' && *p != '*' && *p != 'x' && *p != 'X' &&
+			*p != '\0') p++;
+		if (type[1] == 's' && ((*p == ',' && p[-1] == '\\')
+				       || *p == '*' || *p == 'x' || *p == 'X'))
+		{	p++; goto getvalue; }
+		if((*p == '*' || *p == 'x' || *p == 'X') && 
+		   type[1] != 's')
+		   {
+			cnt= atol(valptr);
+			if(cnt <= 0)
+				return ga_getarg_err("getarg",
+					"bad repetition factor=%d specified",
+					 cnt);
+			if(index+cnt > limit) cnt= limit - index;
+			p++;
+			goto backup;
+		   }
+		/*fprintf(stderr,"index=%d cnt=%d p=%s$\n",index,cnt,p);*/
+		switch(type[1])
+		   {
+			case 'd':
+				iptr= (int *) val;
+				ival= (int) strtol(valptr, &ptr, 0);
+				if (ptr == valptr)
+					index = 0;
+				else
+				{
+					if (iptr+index == NULL)
+						return ga_getarg_err("getarg",
+			       		          "NULL vector ptr at index %d.", index);
+					while(cnt--)
+					       	iptr[index++] = ival;
+				}
+				break;
+			case 'f':
+				fptr= (float *) val;
+				fval= (float) strtod(valptr, &ptr);
+				if (ptr == valptr)
+					index = 0;
+				else
+				{
+					if (fptr+index == NULL)
+						return ga_getarg_err("getarg",
+				       	          "NULL vector ptr at index %d", index);
+					while(cnt--) 
+						fptr[index++] = fval;
+				}
+				break;
+			case 'F':
+				dptr= (double *) val;
+				dval= strtod(valptr, &ptr);
+				if (ptr == valptr)
+					index = 0;
+				else
+				{
+					if (dptr+index == NULL)
+						return ga_getarg_err("getarg",
+				       	          "NULL vector ptr at index %d", index);
+					while(cnt--) 
+						dptr[index++] = dval;
+				}
+				break;
+			case 's':
+				svalptr = sval;
+				strptr = (char **) val;
+				*svalptr = '\0';
+				while (*valptr != '\'' && *valptr != '\0')
+				{
+					if (*valptr == '\\')
+						valptr++;
+				       	*svalptr++ = *valptr++;
+				}
+                                *svalptr= '\0';
+				if (strptr+index == NULL)
+					return ga_getarg_err("getarg",
+		       	       		  "NULL vector ptr at index %d", index);
+				strcpy(strptr[index++], sval);
+				if (*p != '\0') p++;
+				break;
+			default:
+				return ga_getarg_err("getarg",
+					"bad vector type=%c specified",type[1]);
+				break;
+		   }
+		/* if conversion couldn't be made return 0 */
+		if (index == 0) 
+			break;
+		if (*p != '\0') 
+			p++;
+	   }
+	return(index);
+   }
+
+int
+ga_getarg_err(char *subname, char *format, ...)
+   {
+        va_list ap;
+	va_start(ap, format);
+	(void) fprintf(stderr,"\n***** ERROR in %s[%s] *****\n\t",
+		(PROGNAME == NULL ? "(unknown)" : PROGNAME),subname);
+	(void) vfprintf(stderr, format, ap);
+	va_end(ap);
+	(void) fprintf(stderr,"\n");
+	return GETARG_ERROR;
+   }
+#ifndef FORTRAN
+char *getsarg(char *parname, char *defvalue)
+{
+	char parvalue[1024];
+
+	parvalue[0] = '\0';
+
+	if(defvalue)
+	{
+		strcpy(parvalue, defvalue);
+	}
+	
+	getarg(parname, "s", parvalue);
+
+	if(! defvalue && parvalue[0] == '\0') return( (char *) 0 );
+
+	else return(strdup(parvalue));
+}
+#endif

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/src/getlocation.c
===================================================================
--- SwiftApps/Cybershake/app/post/Getpar/getpar/src/getlocation.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Getpar/getpar/src/getlocation.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,74 @@
+#include <stdio.h>
+#include <string.h>
+#include <unistd.h>
+#include <stdlib.h>
+#include "libget.h"
+
+#define LOC_FILE "/LOCATIONS"
+
+
+static int getline(FILE *fd, char *line)
+{
+  char c;
+  int n;
+
+  n=0;
+  while( (c=getc(fd)) != EOF)
+    {
+      if(c == '\n')
+	{
+	  *line= '\0';
+	  return(n);
+	}
+      n++;
+      *line++ = c;
+    }
+  return(EOF);
+}
+
+
+int getlocation(char *keyname, char *location, int fatal)
+{
+  FILE *fd;
+  int i, n;
+  char line[128], name[128], loc[128];
+
+  if( (fd= fopen(LOC_FILE,"r")) == NULL)
+    {
+      if(fatal)
+	{
+	  fprintf(stderr,"cannot open LOCATION file -fatal\n");
+	  exit(-1);
+	}
+      else	return(-1);
+    }
+  while( (n=getline(fd,line)) != EOF)
+    {
+      for(i=0; i<n; i++)
+	{
+	  if(line[i] == '#')	/* truncate line */
+	    {
+	      n= i;
+	      line[n]= '\0';
+	      break;
+	    }
+	}
+      if(n == 0) continue;	/* blank line */
+      n= sscanf(line,"%s %s",name,loc);
+      if( n != 2 ) continue;	/* bad  syntax on line, ignore */
+      if(strcmp(name,keyname) == 0)
+	{
+	  strcpy(location,loc);
+	  fclose(fd);
+	  return(1);
+	}
+    }
+  if(fatal)
+    {
+      fprintf(stderr,"cannot find %s in LOCATION\n",keyname);
+      fclose(fd);
+      exit(-1);
+    }
+  fclose(fd);
+  return(0);
+}

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/src/getlocation.c.save
===================================================================
--- SwiftApps/Cybershake/app/post/Getpar/getpar/src/getlocation.c.save	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Getpar/getpar/src/getlocation.c.save	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,71 @@
+#include	<stdio.h>
+#define LOC_FILE	"/LOCATIONS"
+
+getlocation(keyname,location,fatal)
+char *keyname, *location;
+int fatal;
+   {
+	FILE *fd, *fopen();
+	int i, n;
+	char line[128], name[128], loc[128];
+
+	if( (fd= fopen(LOC_FILE,"r")) == NULL)
+	   {
+		if(fatal)
+		   {
+			fprintf(stderr,"cannot open LOCATION file -fatal\n");
+			exit(-1);
+		   }
+		 else	return(-1);
+	   }
+	while( (n=getline(fd,line)) != EOF)
+	   {
+		for(i=0; i<n; i++)
+		   {
+			if(line[i] == '#')	/* truncate line */
+			   {
+				n= i;
+				line[n]= '\0';
+				break;
+			   }
+		   }
+		if(n == 0) continue;	/* blank line */
+		n= sscanf(line,"%s %s",name,loc);
+		if( n != 2 ) continue;	/* bad  syntax on line, ignore */
+		if(strcmp(name,keyname) == 0)
+		   {
+			strcpy(location,loc);
+			fclose(fd);
+			return(1);
+		   }
+	   }
+	if(fatal)
+	   {
+		fprintf(stderr,"cannot find %s in LOCATION\n",keyname);
+		fclose(fd);
+		exit(-1);
+	   }
+	fclose(fd);
+	return(0);
+   }
+
+static getline(fd,line)
+FILE *fd;
+char *line;
+   {
+	char c;
+	int n;
+
+	n=0;
+	while( (c=getc(fd)) != EOF)
+	   {
+		if(c == '\n')
+		   {
+			*line= '\0';
+			return(n);
+		   }
+		n++;
+		*line++ = c;
+	   }
+	return(EOF);
+   }

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/src/getpar.3
===================================================================
--- SwiftApps/Cybershake/app/post/Getpar/getpar/src/getpar.3	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Getpar/getpar/src/getpar.3	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,402 @@
+.\" @(#)getpar.3	56.1 10/25/93
+.TH GETPAR 3 
+.SH NAME
+setpar, getpar, mstpar, endpar \- retrieve command-line arguments
+.SH SYNOPSIS 
+#include "libget.h"
+.PP
+.B void setpar(int argc, char **argv)
+.PP
+.B int getpar(char *name, char *type,
+.B void *pointer)
+.br
+.B (char/int/float/double) *pointer
+.PP
+.B int mstpar(char *name, char *type,
+.B void *pointer)
+.br
+.B (char/int/float/double) *pointer
+.PP
+.B void endpar(void)
+.PP
+.B char *getspar(char *name, char *defvalue)
+.PP
+.B char *mstspar(char *name)
+.PP
+.B int getbpar(char *name, int defvalue)
+.PP
+.B int getdpar(char *name, int defvalue)
+.PP
+.B float getfpar(char *name, float defvalue)
+.PP
+.B double getffpar(char *name, double defvalue)
+.PP
+The declaration for the argument
+.B pointer
+depends on
+.B type.
+.SH DESCRIPTION
+The
+.I getpar
+routines provide a simple method to parse program arguments from
+the command line, and from files.
+Their use illustrated in the following example:
+.IP "" 10
+main(int ac, char **av)
+.br
+   {
+.br
+	/* specify parameters, some with default values */
+.br
+	static int nx =10;
+.br
+	static char title[40] = "No title given";
+.br
+	static float dx = 0.01;
+.br
+	static char input[40];
+.br
+	static float x[8];
+.br
+	static int boo = 1;	/* boolean, true */
+
+.br
+	setpar(ac,av);			 /* initialize getpar */
+.br
+	getpar("nx","d",&nx);
+.br
+	getpar("dx","f",&dx);
+.br
+	getpar("title","s",title);
+.br
+	mstpar("input","s",input); /* must have this parameter */
+.br
+	getpar("boo","b",&boo);
+.br
+	getpar("x","vf[8]",x);
+.br
+	endpar();		 /* deactivate getpar */
+.br
+
+.br
+	/* rest of program */
+.br
+   }
+.PP
+The routine
+.I setpar
+initializes the package.
+Its arguments are the same as those to main itself.
+It is an error to not call
+.I setpar
+before any other getpar calls.
+The
+.I getpar
+routines are deactivated with a call to
+.I endpar.
+This routine releases memory, and allows the
+.B STOP
+option mentioned below to happen.
+.PP
+The individual parameters are obtained with calls to
+.I getpar
+and
+.I mstpar.
+.I Mstpar
+(must par) is identical to
+.I getpar
+except that it terminates the program with an error message
+if the particular parameter is not specified.
+The following description of
+.I getpar
+also applies to
+.I mstpar.
+.PP
+.I Getpar
+has three parameters.
+The first is a character string which specifies the external name
+of the parameter.
+It can be (practically speaking) of any length.
+The second parameter is a character string which specifies the type
+of variable the parameter is.
+Currently the following types are understood:
+.IP "" 15
+"d"	integer
+.br
+"f"	float
+.br
+"F"	double
+.br
+"s"	character string
+.br
+"b"	boolean (integer)
+.br
+"vd"	integer vector
+.br
+"vf"	float vector
+.br
+"vF"	double vector
+.PP
+The \fItype\fR parameter can be used to indicate the maximum number
+of elements allowable in vectors.
+For example \fItype="vf[4]"\fR or \fItype="vf(4)"\fR would
+cause \fIgetpar\fR to modify no more than 4 elements of the vector,
+regardless of how many elements the user specifies.
+If no limit is specified, a limit of 10 is quietly enforced.
+.PP
+The last parameter is a pointer to the type of variable indicated by
+.I type.
+.I Getpar
+does not modify this variable if no occurrence of the parameter is found.
+Hence, a default value can be assigned before the call to
+.I getpar.
+.I Getpar
+returns 1 the parameter was found, and 0 if not.
+For vectors,
+.I getpar
+returns the number of elements found.
+.PP
+.I Getspar 
+and 
+.I mstspar 
+work similarly to 
+.I getpar 
+and 
+.I mstpar 
+for string parameters, except that the returned value is a pointer to a string
+that contains the parameter value.  The input parameter value is
+copied to a new string using strdup(3).
+In 
+.I getspar
+the input arguments include the
+parameter name and a default value, which can be a NULL string.  The 
+NULL pointer is returned if the default value is a NULL pointer and
+no parameter was found.  
+.I Mstspar
+requires that the parameter be found, hence no defaults are permitted.
+.PP
+.I Getbpar, getdpar, getfpar 
+and 
+.I getffpar 
+work similarly to 
+.I getpar 
+for 
+boolean, integer, float and double parameters, respectively except that 
+the returned value contains the default value and is of type boolean, 
+integer, float or double as requested.
+The input arguments for these functions include the
+parameter name and a default value.
+.SH PARAMETER FORMAT
+.PP
+The parameters on the command line can occur in any order,
+and any number of times.
+In the case of multiple specifications, the last one is used.
+Any parameters that are not requested by
+.I getpar
+or
+.I mstpar
+are ignored.
+An example of specifying parameters for the above program is:
+.IP "" 10
+a.out dx=0.123  nx=300 title="sample title"  dy=0.456 noboo x=1.0,4x2.0,2x5.12
+.PP
+Each specification is of the form
+.I name=value.
+No embedded blanks are allowed on either side of the equals ("=") sign.
+Character strings with blanks or tabs are delimited with single (') or
+double (") quotes.
+The only exceptions to the
+.I name=value
+rule are boolean variables which are specified as
+.I name
+or
+.I noname
+to indicate true or false.
+Boolean variables may also be specified as integers with the form
+.I name=(int).
+In the above example, true values for
+.I boo
+are specified as either
+.I boo
+or
+.I boo=1,
+and false values as either
+.I noboo
+or
+.I boo=0.
+If
+.I boo=100
+is given then the returned value is
+.I 100.
+The value for vector is given as a list separated by commas (,).
+No embedded blanks are allowed in the list.
+Repetition factors (2x and 4x in the above example) can be used to
+specify repeated values.
+.PP
+Several additional features are also available.
+At any point on the command line, the parameter
+.I par=filename
+can be given.
+This will cause
+.I getpar
+to look in the file
+.I filename
+for additional parameters.
+Several
+.I par
+arguments can be given on the command line.
+The search order is left to right.
+Consequently, any parameters given after the
+.I par=filename
+will override their values given in
+.I filename.
+Also, the environment (if allowed, see NOENV option below) is searched first.
+Thus parameters on the command line and in par files override parameters
+set in the environment.
+The format of the parameters in the par file follow the same rules as the
+command line.
+Several specifications separated by while space, can occur on a given
+line, and their can be any number of lines.
+A '#' symbol in the position where a name would normally occur,
+indicates that the rest of the line is a comment, and is consequently
+ignored.
+The specification
+.I par=filename
+is also allow in the file, however recursions are limited in depth
+(current limit is 4).
+.PP
+As a concession to the traditional switch passing method, a parameter
+of the form
+.IP "" 10
+a.out -abc
+.PP
+is available to the calling program as a character string with the call
+.IP "" 10
+getpar("SWITCH","s",&sw);
+.PP
+where in the example above, the string
+.I sw
+would be
+.I abc.
+.PP
+Parameters in the shell environment can be set (unset) with the
+C-shell commands:
+.IP "" 10
+setenv name value
+.IP "" 10
+unsetenv name
+.PP
+The parameters in the environment can be printed with the command
+.IP "" 10
+printenv
+.PP
+Five additional parameters allow for input checking, and program
+interrogation.
+.TP 10
+.B STOP
+The call to
+.I endpar
+will terminate the program if this parameter is given.
+.TP 10
+.B LIST
+Each call to
+.I getpar
+or
+.I mstpar
+will cause the name, type, and value of the variable to be
+listed on
+.I stderr.
+If
+.I LIST=filename
+is given, the listing is put in the file
+.I filename.
+This option is useful for interrogating a program as to what it wants
+for input.
+.TP 10
+.B INPUT
+.I Setpar
+will list all input parameters that are found.
+This option is useful for debugging input data, and determining
+where a particular parameter is coming from in multiple
+.I par
+specifications.
+If
+.I INPUT=filename
+is given, the listing is put in the file
+.I filename.
+.TP 10
+.B NOENV
+will disallow any parameters to be obtained from the environment.
+It may occur on the command line, in a par file, or in the environment
+itself.
+.TP 10
+.B VERBOSE
+will cause
+.I getpar/mstpar
+to print the name of the parameter before starting to search for it.
+This provides a quick method of determining which subroutine call is
+at fault, when a program dies in the getpar package.
+.PP 
+Limited parameter substitution is supported.  An example of the syntax is
+.TP 10
+.I dir=/usr/local/lib
+.TP 10
+.I file=filename
+.TP 10
+.I path=$(dir)/$(path)
+Parameter substitution occurs during parameter input.  Whenever a
+parameter to be substituted is encountered during input, the list of
+previously defined parameters (including the environment) are searched
+for the value and immediately substituted.  Thus, for the purpose of
+substitution, the ordering of parameter input is important.
+Substitution may be suppressed by escaping the "$" with a backslash (
+\\ ).  If a parameter value contains the name of an undefined parameter,
+it is simply removed from the parameter value.
+.SH AVAILABILITY
+The
+.I getpar
+routines are in the library
+.I /opt/util/lib/libget.a
+and may be loaded with
+.I -L/opt/util/lib -lget
+.SH "SEE ALSO"
+getarg(3)
+.SH WARNINGS
+Be careful that
+.I type
+is correctly specified, when dealing with floats and doubles.
+If a double pointer is used with \fItype="f"\fR,
+The lowest 32 bits of the mantissa will not be set correctly.
+If a float pointer and \fItype="F"\fR
+are used, the next element in memory will be clobbered.
+If the last combination is used in vector mode, you will get garbage back.
+.PP
+If a program appears to be behaving differently for identical input
+parameters, make sure that some defaulted parameters are not sneaking
+in via the environment.
+The NOENV option may be of some use in this case.
+If you believe back door parameters are a bad practice, then set NOENV in
+your login shell.
+.SH DIAGNOSTICS
+The routines produce error messages of the type:
+.br
+.br
+****** ERROR program[getpar]: ******
+.br
+	error message
+.br
+.br
+Hopefully the error message is diagnostic of the trouble.
+If you are debugging a program try the VERBOSE option to see which
+call generated the problem.
+.SH BUGS
+Errors in calls to
+.I mstpar
+are often reported as calls to
+.I getpar.
+.PP
+Parameter substitution might be more useful (but the program would
+be more complex) if the ordering requirements were relaxed.
+.SH AUTHOR
+Originally Robert W. Clayton, Seismological Laboratory, Caltech,
+Pasadena, CA 91125.  Now Blair Zajac has updated some of this stuff.

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/src/getpar.c
===================================================================
--- SwiftApps/Cybershake/app/post/Getpar/getpar/src/getpar.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Getpar/getpar/src/getpar.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,921 @@
+/* 
+ * NAME
+ *	getpar
+ *
+ * DESCRIPTION
+ *	retreive command line arguments.  Acquired from Caltech.
+ *
+ *	See getpar.3 for details.
+ * copyright (c) Robert W. Clayton
+ *		 Seismological Laboratory
+ *		 Caltech
+ *		 Pasadena, CA 91125
+ *
+ * Getpar routines:
+ *
+ * Externally visible routines:
+ *
+ *		setpar(argc,argv)
+ *		getpar(name,type,valptr)
+ *		mstpar(name,type,valptr)
+ *		endpar()
+ *
+ * To get C-version:
+ *		cc -c getpar.c
+ *
+ * To get F77-version:
+ *		cp getpar.c fgetpar.c
+ *		cc -c -DFORTRAN fgetpar.c
+ *		rm fgetpar.c
+ *
+ * To get the environment processing stuff add the flag
+ *-DENVIRONMENT to each of the cc's above.
+ *
+ *  Modification History:
+ *  ---------------------
+ *   3    94    Blair Zajac     Changed 
+ *   7    91    Jeff Given      Added getspar/mstspar: new functions interface
+ *                              for string parameters (C only)
+ *   6    91    Jeff Given      Added escape for new line in par files
+ *  04/01/91    Jeff Given      Added parameter substitution capability
+ *
+ *  06/08/90	Glenn Nelson	(via Richard Stead) added "ENDPAR" command
+ *				line feature, added fix for booleans in
+ *				parfiles, added better way of obtaining
+ *				environment, corrected spelling
+ *  06/08/90	Richard Stead	cleaned up some of lint's complaints
+ *  05/25/90	Doug Neuhauser	Changed arglist elements from pointers to
+ *				integer offsets into ARGBUF to allow
+ *				arbitrary realloc calls.
+ * ??/??/??	Rob Clayton	Original coding.
+ *
+ *SccsId: @(#)getpar.c	56.1 10/25/93
+ */
+#include	<stdio.h>
+#include	<stdlib.h>
+#include	<stdarg.h>
+#include	<string.h>
+#include	"libget.h"
+
+#define MAXLINE		5120	/* max length of line in par file */
+#define MAXNAME		256	/* max length of name */
+#define MAXVALUE	5120	/* max length of value */
+#define MAXFILENAME	256	/* max length of par file name */
+#define MAXVECTOR	20	/* max # of elements for unspecified vectors */
+#define GETPAR_ERROR	100	/* exit status for getpar error */
+#define GETPAR_STOP	101	/* exit status for STOP or mstpar */
+#define MAXPARLEVEL	8	/* max recursion level for par files */
+
+#ifdef FORTRAN
+#define GETPAR	getpar_
+#define MSTPAR	mstpar_
+#define ENDPAR	endpar_
+#else
+#define GETPAR	getpar
+#define MSTPAR	mstpar
+#define ENDPAR	endpar
+#endif
+
+#define INIT	 1	/* bits for FLAGS (ext_par.argflags) */
+#define STOP	 2
+#define LIST	 4
+#define END_PAR	 8
+#define VERBOSE	16
+
+#define LISTINC		32	/* increment size for arglist */
+#define BUFINC		1024	/* increment size for argbuf */
+
+struct arglist		/* structure of list set up by setpar */
+   {
+	int argname_offset;
+	int argval_offset;
+	int hash;
+   };
+struct ext_par		/* global variables for getpar */
+   {
+	char *progname;
+	int argflags;
+	struct arglist *arglist;
+	struct arglist *arghead;
+	char *argbuf;
+	int nlist;
+	int nbuf;
+	int listmax;
+	int bufmax;
+	FILE *listout;
+  }	ext_par;
+
+
+/* abbreviations: */
+#define AL 		struct arglist
+#define PROGNAME	ext_par.progname
+#define FLAGS		ext_par.argflags
+#define ARGLIST		ext_par.arglist
+#define ARGHEAD		ext_par.arghead
+#define ARGBUF		ext_par.argbuf
+#define NLIST		ext_par.nlist
+#define NBUF		ext_par.nbuf
+#define LISTMAX		ext_par.listmax
+#define BUFMAX		ext_par.bufmax
+#define LISTFILE	ext_par.listout
+
+static int gp_getvector(char *list, char *type, void *val);
+static int gp_compute_hash(char *s);
+static char *gp_fgets(char *line, int maxline, FILE *file);
+static FILE *gp_create_dump(char *fname, char *filetype);
+static void gp_add_entry(char *name, char *value);
+static void gp_close_dump(FILE *file);
+static void gp_do_par_file(char *fname, int level);
+static void gp_subpar(char **apl, char **apv);
+static void gp_getpar_err(char *subname, char *format, ...);
+static void gp_do_environment(int ac, char **av);
+
+int
+#ifdef FORTRAN
+setpar_()
+#else
+setpar(int ac, char **av)	/* set up arglist & process INPUT command */
+#endif
+   {
+	register char *pl, *pn, *pv;
+	char  t, name[MAXNAME], value[MAXVALUE];
+
+	FILE *file;
+	int i, addflags, nevlist, endsetpar = 0;
+	struct arglist *alptr;
+	
+	char  *apl, *apv;
+
+#ifdef FORTRAN
+	int ac; char **av;
+	extern int xargc; extern char **xargv;
+	ac= xargc; av= xargv;
+#endif
+
+	if(av != (char **) NULL)
+	{
+		PROGNAME = *av;
+	}
+	else
+	{
+		PROGNAME = (char *) NULL;
+		ac = 0;
+	}
+	
+	FLAGS= INIT;
+	LISTFILE= stderr;
+
+	ARGLIST= NULL;
+	ARGBUF = NULL;
+	NLIST= NBUF= LISTMAX= BUFMAX= 0;
+#ifdef ENVIRONMENT
+	gp_do_environment(ac,av);
+#endif
+	nevlist= NLIST;
+	while(--ac > 0 && endsetpar == 0)
+	   {
+		av++;
+		pl= *av;
+		while(*pl == ' ' || *pl == '\t') pl++;
+		/* get name */
+		pn= name;
+		while(*pl != '=' && *pl != '\0') *pn++ = *pl++;
+		*pn++ = '\0';
+		/* get value */
+		if(*pl == '=') pl++;
+		*value = '\0';
+		pv=value;
+
+		if(*pl == '"' || *pl == '\'')
+		{
+			t= *pl++;
+			while(*pl != '\0')
+			{
+				if(*pl == t)
+				{
+					if(pl[-1] != '\\') break;
+					pv[-1]= t;
+					pl++;
+				}
+				else
+				{
+					if(*pl == '$')
+					{
+						apl = pl;
+						apv = pv;
+						gp_subpar(&apl, &apv);
+						pl = apl;
+						pv = apv;
+					}
+					else *pv++ = *pl++;
+				}
+			}
+		}
+		else	
+		{
+			while(*pl) 
+				if(*pl == '$')
+				{
+					apl = pl;
+					apv = pv;
+					gp_subpar(&apl, &apv);
+					pl = apl;
+					pv = apv;
+				}
+				else *pv++ = *pl++;
+		}
+		*pv= '\0';
+		if(name[0] == '-') gp_add_entry("SWITCH",&name[1]);
+		else		gp_add_entry(name,value);
+		if(strcmp("par",name)==0) /* par file */
+			gp_do_par_file(value,1);
+
+	/* Added by Glenn Nelson (nelson at ollie.UCSC.EDU) to allow mixture
+	   of getpar() and ordinary command line stuff. */
+		if (strcmp("ENDPAR", name) == 0) endsetpar = 1;
+	   }
+
+	ARGHEAD= ARGLIST;
+
+#ifdef ENVIRONMENT
+	*value= '\0';
+	if(GETPAR("NOENV","b",value)) ARGHEAD= ARGLIST+ nevlist;
+#endif
+	addflags= 0;
+	*value= '\0';
+	if(GETPAR("STOP","b",value)) addflags |= STOP;
+	*value= '\0';
+	if(GETPAR("VERBOSE","b",value)) addflags |= VERBOSE;
+	*value= '\0';
+#ifdef FORTRAN
+	if(GETPAR("LIST","s",value, 0, 0, 0))
+#else
+	if(GETPAR("LIST","s",value))
+#endif
+	   {
+		addflags |= LIST;
+		LISTFILE =gp_create_dump(value,"list");
+	   }
+	*value= '\0';
+#ifdef FORTRAN
+	if(GETPAR("INPUT","s",value, 0, 0, 0))
+#else
+	if(GETPAR("INPUT","s",value))
+#endif
+	   {
+		file =gp_create_dump(value,"list input");
+		fprintf(file,"%s: getpar input listing\n",PROGNAME);
+		for(i=0, alptr=ARGLIST; i<NLIST; i++, alptr++)
+		   {
+			fprintf(file,"%3d: %16s = %s\n",
+				i,ARGBUF+alptr->argname_offset, 
+				ARGBUF+alptr->argval_offset);
+		   }
+		gp_close_dump(file);
+	   }
+	FLAGS |= addflags;
+
+	/* Added by Glenn Nelson (nelson at ollie.UCSC.EDU) to allow setpar()
+	   to terminate before all command line args are exhausted. */
+	return ac;
+   }
+
+/* add an entry to arglist, expanding memory if necessary */
+void gp_add_entry(char *name, char *value)
+   {
+	struct arglist *alptr;
+	int len;
+	register char *ptr;
+
+	/* check arglist memory */
+	if(NLIST >= LISTMAX)
+	   {
+		LISTMAX += LISTINC;
+		if(ARGLIST == NULL)
+			ARGLIST= (AL *)malloc(LISTMAX * sizeof(AL));
+		 else	ARGLIST= (AL *)realloc(ARGLIST,LISTMAX * sizeof(AL));
+	   }
+	/* check argbuf memory */
+	len= strlen(name) + strlen(value) + 2; /* +2 for terminating nulls */
+	while(NBUF+len >= BUFMAX)
+	   {
+		BUFMAX += BUFINC;
+		if(ARGBUF == NULL)
+			ARGBUF= (char *)malloc(BUFMAX);
+		 else	ARGBUF= (char *)realloc(ARGBUF,BUFMAX);
+	   }
+	if(ARGBUF == NULL || ARGLIST == NULL)
+		gp_getpar_err("setpar","cannot allocate memory");
+
+	/* add name */
+	alptr= ARGLIST + NLIST;
+	alptr->hash= gp_compute_hash(name);
+	alptr->argname_offset = NBUF;
+	ptr= ARGBUF + NBUF;
+	do *ptr++ = *name; while(*name++);
+
+	/* add value */
+	NBUF += len;
+	alptr->argval_offset= ptr - ARGBUF;
+	do *ptr++ = *value; while(*value++);
+	NLIST++;
+   }
+
+#define BETTER_WAY	/* The environment is always available (as
+			   suggested by Glenn Nelson (nelson at ollie.UCSC.EDU) */
+
+void gp_do_environment(int ac, char **av)
+   {
+	char **ae;
+	register char *pl, *pn, *pv;
+	char name[MAXNAME], value[MAXVALUE], t;
+#ifdef BETTER_WAY
+	extern char     **environ;
+#endif
+
+	/* The environ pointer ae, is assumed to have a specific relation
+	   to the arg pointer av. This may not be portable. */
+#ifndef BETTER_WAY
+	ae= av +(ac+1);
+	if(ae == NULL) return;
+#else
+	ae = environ;
+#endif
+
+	while(*ae != NULL)
+	   {
+		pl= *ae++;
+		while(*pl == ' ' || *pl == '\t') pl++;
+		/* get name */
+		pn= name;
+		while(*pl != '=' && *pl != '\0') *pn++ = *pl++;
+		*pn = '\0';
+		if(strcmp("NOENV",pn) == 0) return;
+
+		/* get value */
+		if(*pl == '=') pl++;
+		pv= value;
+		if(*pl == '"' || *pl == '\'')
+		   {
+			t= *pl++;
+			while(*pl != '\0')
+			   {
+				if(*pl == t)
+				   {
+					if(pl[-1] != '\\') break;
+					pv[-1]= t;
+					pl++;
+				   }
+				 else	*pv++ = *pl++;
+			   }
+		   }
+		 else	while(*pl) *pv++ = *pl++;
+		*pv= '\0';
+		gp_add_entry(name,value);
+	   }
+   }
+
+void ENDPAR(void)  /* free arglist & argbuf memory, & process STOP command */
+   {
+	if(ARGLIST != NULL) free(ARGLIST);
+	if(ARGBUF  != NULL) free(ARGBUF);
+	ARGBUF=  NULL;
+	ARGLIST= NULL;
+	if(FLAGS & STOP)
+	   {
+		fprintf(stderr,"%s[endpar]: stop due to STOP in input\n",
+			PROGNAME);
+		exit(GETPAR_STOP);
+	   }
+	FLAGS= END_PAR;	/* this stops further getpar calls */
+   }
+
+int
+#ifdef FORTRAN
+mstpar_(char *name, char *type, int *val, int dum1, int dum2, int lens)
+/* dum1 & dum2 are extra args that fortran puts in */
+#else
+mstpar(char *name, char *type, void *val)
+#endif
+   {
+	int cnt;
+	char *typemess;
+#ifndef	FORTRAN
+	if( (cnt= GETPAR(name,type,val)) > 0) return(cnt);
+#else
+	if( (cnt= GETPAR(name,type,val,dum1,dum2,lens)) > 0) return(cnt);
+#endif
+	/* The following line corrects a common input error */
+	if(type[1]=='v') { type[1]= type[0]; type[0]='v'; }
+
+	switch(*type)
+	   {
+		case 'd': typemess= "an integer";	break;
+		case 'f': typemess= "a float";		break;
+		case 'F': typemess= "a double";		break;
+		case 's': typemess= "a string";		break;
+		case 'b': typemess= "a boolean";	break;
+		case 'v': switch(type[1])
+			   {
+				case 'd': typemess= "an integer vector"; break;
+				case 'f': typemess= "a float vector"; 	 break;
+				case 'F': typemess= "a double vector";	 break;
+				default : typemess= "unknown vector (error)";
+					break;
+			   }
+			  break;
+		default : typemess= "unknown (error)";	break;
+	   }
+	gp_getpar_err("mstpar","must specify value for '%s', expecting %s",
+		name,typemess);
+	return 0;
+   }
+
+int
+#ifdef FORTRAN
+getpar_(char *name, char *type, void* val, int dum1, int dum2, int lens)
+/* dum1 & dum2 are extra args that fortran puts in */
+#else
+getpar(char *name, char *type, void *val)
+#endif
+   {
+	register char *sptr;
+	register struct arglist *alptr;
+	double *dbl;
+	float *flt;
+	int *intgr;
+	int h, hno, hyes, found;
+#ifdef FORTRAN
+	int termval;
+#endif
+	char line[MAXLINE], *str, *noname;
+	if(FLAGS & END_PAR)
+		gp_getpar_err("getpar","called after endpar");
+	if( (FLAGS & INIT) == 0)
+		gp_getpar_err("getpar","not initialized with setpar");
+	if(FLAGS & VERBOSE)
+		fprintf(stderr,"getpar: looking for %s\n",name);
+
+	/* The following line corrects a common input error */
+	if(type[1]=='v') { type[1]= type[0]; type[0]='v'; }
+
+	found=0;
+
+	if(NLIST <= 0) return(found);
+
+	/*  
+	 *  if list is NULL then return NOW; the following "for" loop
+	 *  the pointer ARGLIST + (NLIST-1) gives ARGLIST -1 which
+	 *  does not test to < ARGHEAD for some reason
+         */
+
+	if(*type == 'b') goto boolean;
+
+	h= gp_compute_hash(name);
+
+	/* search list backwards, stopping at first find */
+	for(alptr= ARGLIST +(NLIST-1); alptr >= ARGHEAD; alptr--)
+	   {
+		if(alptr->hash != h) continue;
+		if(strcmp(ARGBUF+alptr->argname_offset,name) != 0) continue;
+		str= ARGBUF + alptr->argval_offset;
+		switch(*type)
+		   {
+			case 'd':
+			        intgr = (int *) val;
+				*intgr= atoi(str);
+				found=1;
+				break;
+			case 'f':
+				flt= (float *) val;
+				*flt= atof(str);
+				found=1;
+				break;
+			case 'F':
+				dbl= (double *) val;
+				*dbl= atof(str);
+				found=1;
+				break;
+			case 's':
+                                sptr= (char *) val;
+                                while(*str) *sptr++ = *str++;
+                                *sptr= '\0';
+#ifdef FORTRAN
+
+/*  If we are in fortran, overwrite the null terminator and pad out 
+ *  with blanks ;  if this is called internally from setpar_ lens
+ *  will be 0 and the \0 will be left in place
+ */
+
+				while(sptr < (((char *)val)+lens)) 
+					*sptr++ = ' ';
+#endif
+                                found=1;
+                                break;
+			case 'v':
+				found= gp_getvector(str,type,val);
+				break;
+			default:
+				gp_getpar_err("getpar",
+					"unknown conversion type %s",type);
+				break;
+		   }
+		break;
+	   }
+	goto list;
+
+boolean:
+
+	noname= line;
+	sprintf(noname,"no%s",name);
+	hno = gp_compute_hash(noname);
+	hyes= gp_compute_hash(  name);
+	found=0;
+	/* search list backwards, stopping at first find */
+	for(alptr= ARGLIST +(NLIST-1); alptr >= ARGHEAD; alptr--)
+	   {
+		if(alptr->hash != hno && alptr->hash != hyes) continue;
+		if(strcmp(ARGBUF+alptr->argname_offset,  name)== 0)
+		   {
+			if(*(ARGBUF+alptr->argval_offset) == '\0')
+			  *( (int *) val)= 1;
+			else
+			  *( (int *) val)= (int)atol(ARGBUF+alptr->argval_offset);
+			found++;
+			break;
+		   }
+		if(strcmp(ARGBUF+alptr->argname_offset,noname)== 0)
+		   {	*( (int *) val)= 0; found++; break; }
+	   }
+   list:
+	if(FLAGS & LIST)
+	   {
+		switch(*type)
+		   {
+			case 'd': sprintf(line,"(int) = %d",*( (int *) val));
+				break;
+			case 'f': flt= (float *)val;
+				  sprintf(line,"(flt) = %14.6e",*flt); break;
+			case 'F': dbl= (double *)val;
+				  sprintf(line,"(dbl) = %14.6e",*dbl); break;
+#ifdef FORTRAN
+                        case 's':
+				strcpy(line,"(str) = ");
+				termval = (lens > MAXLINE-1-8) ? MAXLINE-1-8 : lens;
+				strncpy(line + 8, (char *)val, termval);
+				line[termval+8] = '\0';
+				
+				break;
+#else
+                        case 's': sprintf(line,"(str) = %s", (char *) val);
+			        break;
+#endif
+			case 'b': sprintf(line,"(boo) = %d",*( (int *) val));
+				break;
+			case 'v': switch(type[1])
+				   {
+					/* should list these out */
+					case 'd': sprintf(line,"(int vec)");
+						break;
+					case 'f': sprintf(line,"(flt vec)");
+						break;
+					case 'F': sprintf(line,"(dbl vec)");
+						break;
+					default : sprintf(line," vec type error");
+						break;
+				   }
+				  break;
+			default : sprintf(line," type error"); break;
+		   }
+		fprintf(LISTFILE,"%16s (%s) %s \n",name,
+			(found ? "set":"def"),line);
+	   }
+	return(found);
+   }
+
+FILE *gp_create_dump(char *fname, char *filetype)
+   {
+	FILE *temp;
+
+	if(*fname == '\0') return(stderr);
+	if(strcmp(fname,"stderr") == 0) return(stderr);
+	if(strcmp(fname,"stdout") == 0) return(stdout);
+	if( (temp= fopen(fname,"w")) != NULL) return(temp);
+	fprintf(stderr,"%s[setpar]: cannot create %s file %s\n",
+		PROGNAME,filetype,fname);
+	return(stderr);
+   }
+
+void gp_close_dump(FILE *file)
+   {
+	if(file == stderr || file == stdout) return;
+	fclose(file);
+   }
+
+int gp_compute_hash(char *s)
+   {
+	register int h;
+	h= s[0];
+	if(s[1]) h |= (s[1])<<8;	else return(h);
+	if(s[2]) h |= (s[2])<<16;	else return(h);
+	if(s[3]) h |= (s[3])<<24;
+	return(h);
+   }
+
+void gp_do_par_file(char *fname, int level)
+   {
+	register char *pl, *pn, *pv;
+	char t, line[MAXLINE], name[MAXNAME], value[MAXVALUE];
+	FILE *file;
+	char *apl, *apv;
+ 
+	if(level > MAXPARLEVEL)
+		gp_getpar_err("setpar","%d (too many) recursive par file",level);
+		
+	if(*fname == '\0') return;
+	
+	if( (file=fopen(fname,"r"))==NULL)
+		gp_getpar_err("setpar","cannot open par file %s",fname);
+
+	while( gp_fgets(line,MAXLINE,file) != NULL )
+	   {
+		pl= line;
+		/* loop over entries on each line */
+	loop:	while(*pl==' ' || *pl=='\t') pl++;
+		if(*pl=='\0'|| *pl=='\n') continue;
+		if(*pl=='#') continue; /* comments on rest of line */
+
+		/* get name */
+		pn= name;
+		while(*pl != '=' && *pl != '\0' && *pl != ' '
+			&& *pl != '\n'		/* FIX by Glenn Nelson */
+			&& *pl != '\t') *pn++ = *pl++;
+		*pn = '\0';
+
+		if(*pl == '=') pl++;
+
+		/* get value */
+
+		*value= '\0';
+		pv= value;
+		
+		if(*pl == '"' || *pl == '\'')
+		{
+			t= *pl++;
+			while(*pl != '\0' && *pl != '\n')
+			{
+				if(*pl == t)
+				{
+					if(pl[-1] != '\\') 
+					{
+						pl++;
+						break;
+					}
+					pv[-1]= t;
+					pl++;
+				}
+				else
+				{
+					if(*pl == '$')
+					{
+						apl = pl;
+						apv = pv;
+						gp_subpar(&apl, &apv);
+						pl = apl;
+						pv = apv;
+					}
+					else *pv++ = *pl++;
+				}
+			}
+		}
+		else   
+		{
+			while(*pl != '\0' && *pl != '\n'
+			      && *pl != '\t' && *pl != ' ') 
+				if(*pl == '$')
+				{
+					apl = pl;
+					apv = pv;
+					gp_subpar(&apl, &apv);
+					pl = apl;
+					pv = apv;
+				}
+				else *pv++ = *pl++;
+		}
+		*pv= '\0';
+
+		gp_add_entry(name,value);
+		if(strcmp("par",name) == 0)
+			gp_do_par_file(value,level+1);
+		goto loop;
+	   }
+	fclose(file);
+   }
+
+void gp_getpar_err(char *subname, char *format, ...)
+   {
+        va_list ap;
+	va_start(ap, format);
+	(void) fprintf(stderr,"\n***** ERROR in %s[%s] *****\n\t",
+		       (PROGNAME == NULL ? "(unknown)" : PROGNAME),subname);
+	(void) vfprintf(stderr, format, ap);
+	va_end(ap);
+	(void) fprintf(stderr,"\n");
+	exit(GETPAR_ERROR);
+   }
+int gp_getvector(char *list, char *type, void *val)
+   {
+	register char *p;
+	register int index, cnt;
+	char *valptr;
+	int limit;
+	int ival, *iptr;
+	float fval, *fptr;
+	double dval, *dptr;
+
+	limit= MAXVECTOR;
+	if(type[2] == '(' || type[2] == '[') limit= (int)atol(&type[3]);
+	if(limit <= 0)
+		gp_getpar_err("getpar","bad limit=%d specified",limit);
+	index= 0;
+	p= list;
+	while(*p != '\0'  && index < limit)
+	   {
+		cnt=1;
+	 backup: /* return to here if we find a repetition factor */
+		while(*p == ' ' || *p == '\t') p++;
+		if(*p == '\0') return(index);
+		valptr= p;
+		while( *p != ',' && *p != '*' && *p != 'x' && *p != 'X' &&
+			*p != '\0') p++;
+		if(*p == '*' || *p == 'x' || *p == 'X')
+		   {
+			cnt= (int)atol(valptr);
+			if(cnt <= 0)
+				gp_getpar_err("getpar",
+					"bad repetition factor=%d specified",
+					 cnt);
+			if(index+cnt > limit) cnt= limit - index;
+			p++;
+			goto backup;
+		   }
+		switch(type[1])
+		   {
+			case 'd':
+				iptr= (int *) val;
+				ival= (int)atol(valptr);
+				while(cnt--) iptr[index++] = ival;
+				break;
+			case 'f':
+				fptr= (float *) val;
+				fval= atof(valptr);
+				while(cnt--) fptr[index++] = fval;
+				break;
+			case 'F':
+				dptr= (double *) val;
+				dval= atof(valptr);
+				while(cnt--) dptr[index++] = dval;
+				break;
+			default:
+				gp_getpar_err("getpar",
+					"bad vector type=%c specified",type[1]);
+				break;
+		   }
+		if(*p != '\0') p++;
+	   }
+	return(index);
+   }
+
+/*  This allows parameter substitution */
+
+void gp_subpar(char **apl, char **apv)
+{
+	register char *pl, *pv;
+	char     subname[MAXNAME];
+	int      valid = 0;
+	char     *bpl, *bpv;
+	
+	if((*apl)[-1] == '\\')
+	{
+		(*apv)[-1] = (*apl)[0];
+		(*apl)++;
+		return;
+	}
+
+	pl = *apl;
+	pl++;
+
+	if(*pl == '(' )
+	{
+		pv=subname;
+		pl++;
+		while(*pl != ')' && *pl != '\0')
+		{
+			if(*pl == '$')
+			{
+				bpl = pl;
+				bpv = pv;
+				gp_subpar(&bpl, &bpv);
+				pl = bpl;
+				pv = bpv;
+			}
+			else *pv++ = *pl++;
+		}
+		*pv = '\0';
+		if(*pl == ')' )
+		{
+			pl++;
+			pv = *apv;
+			valid = 1;
+			ARGHEAD= ARGLIST;
+#ifndef	FORTRAN
+			if(GETPAR(subname, "s", pv))
+#else
+			if(GETPAR(subname, "s", pv, 0, 0, 0))
+#endif
+			{
+				pv += strlen(pv);
+			}
+			*apv=pv;
+			*apl=pl;
+				
+		}
+	}
+	if(valid)
+	{
+		return;
+	}
+	else
+	{
+		**apv = **apl;
+		(*apv)++;
+		(*apl)++;
+	}
+}
+
+char *gp_fgets(char *line, int maxline, FILE *file)
+{
+	register char *p;
+	register int i;
+	int q;
+
+        p = line;
+	*p = '\0';
+
+	if    ( (q = getc(file)) == EOF)     return((char *) NULL);
+	else if( (unsigned char) q == '\n') return(line);
+
+	*p = (unsigned char) q;
+	p++;
+
+	for (i=1; (q = getc(file)) != EOF && i < maxline;)
+	{
+		*p = (unsigned char) q;
+		if(*p == '\0') return(line);
+	        if(*p == '\n')
+		{
+			if( *(p-1) == '\\') 
+			{
+				p--;
+				i--;
+			}
+			else break;
+		}
+		else 
+		{
+			p++;
+			i++;
+		}
+	}
+	*p = '\0';
+	
+	return line;
+}
+#ifndef FORTRAN
+char *mstspar(char *parname)
+{
+	char parvalue[MAXVALUE];
+	
+	mstpar(parname, "s", parvalue);
+	
+	return(strdup(parvalue));
+}
+char *getspar(char *parname, char *defvalue)
+{
+	char parvalue[MAXVALUE];
+	
+	parvalue[0] = '\0';
+
+	if(defvalue)
+	{
+		strcpy(parvalue, defvalue);
+	}
+	
+	getpar(parname, "s", parvalue);
+
+	if(! defvalue && parvalue[0] == '\0') return( (char *) 0 );
+	
+	else return(strdup(parvalue));
+
+}
+#endif

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/src/getpar.tar.gz
===================================================================
(Binary files differ)


Property changes on: SwiftApps/Cybershake/app/post/Getpar/getpar/src/getpar.tar.gz
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: SwiftApps/Cybershake/app/post/Getpar/getpar/src/libget.h
===================================================================
--- SwiftApps/Cybershake/app/post/Getpar/getpar/src/libget.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Getpar/getpar/src/libget.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,39 @@
+  /*
+   *  libpar.h include file.
+   *
+   *  Provide function definitions/prototypes for the 
+   *  routines found in libpar.a.  Note these routines may change if 
+   *  a new release of libpar is received.  Unfortunately this file 
+   *  and the release are independent.
+   */
+    
+#ifndef _LIBPAR_H
+#define _LIBPAR_H 1
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+    
+extern int	countarg(char *name, char *type);
+extern void	endarg (void);
+extern void	endpar (void);
+extern int	getarg (char *name, char *type, void *ptr_to_some_type);
+extern int	getpar (char *name, char *type, void *ptr_to_some_type);
+extern int	lenarg (char *name);
+extern int	mstpar (char *name, char *type, void *ptr_to_some_type);
+extern void	setarg (char *list, char *subname);
+extern int	setpar (int argc, char **argv);
+extern char    *getspar(char *name, char *defvalue);
+extern char    *mstspar(char *name);
+extern char    *getsarg(char *name, char *defvalue);
+extern int	getbpar(char *name, int defvalue);
+extern int	getdpar(char *name, int defvalue);
+extern float	getfpar(char *name, float defvalue);
+extern double	getffpar(char *name, double defvalue);
+extern int      getlocation(char *keyname, char *location, int fatal);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif	/* _LIBPAR_H */

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/defs.h
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/defs.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/defs.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,34 @@
+
+#define DEFAULT_DHYPO_FRAC       0.75  /* hypo at 0.75 down-dip width */
+#define DEFAULT_SHYPO_STEP       20.0  /* hypo spacing at 20 km along strike */
+#define DEFAULT_SHYPO_MIN_OFF    1.0   /* hypos start at 1.0 km along strike */
+#define DEFAULT_SLIPS_TO_HYPOS   2     /* #slip models = 2 times #hypos */
+
+#define DEFAULT_VR_TO_VS_FRAC    0.8   /* vrup = 0.8 times local Vs */
+#define DEFAULT_SHAL_VRUP_FRAC   0.8   /* shallow_vrup = 0.8 times back_vrup */
+#define DEFAULT_TSFAC            -0.5  /* tinit is shifted -0.5 at max_slip */
+
+#define DEFAULT_SIDE_TAP         0.1   /* taper slip at 0.1*flen on sides */
+#define DEFAULT_BOT_TAP          0.1   /* taper slip at 0.1*fwid on top/bot */
+
+#define         DEFAULT_DT         0.1
+#define         NTMAX              10000
+#define         SOMERVILLE_FLAG    1
+#define         MAI_FLAG           2
+#define         MINSLIP            1.0e-02
+
+#define RDONLY_FLAGS    O_RDONLY
+#define RDWR_FLAGS      O_RDWR
+#define CROPTR_FLAGS    O_CREAT | O_TRUNC | O_RDWR
+
+#if _FILE_OFFSET_BITS == 64
+
+#undef RDONLY_FLAGS
+#undef RDWR_FLAGS
+#undef CROPTR_FLAGS
+
+#define RDONLY_FLAGS    O_RDONLY | O_LARGEFILE
+#define RDWR_FLAGS      O_RDWR | O_LARGEFILE
+#define CROPTR_FLAGS    O_CREAT | O_TRUNC | O_RDWR | O_LARGEFILE
+
+#endif

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/fourg.f
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/fourg.f	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/fourg.f	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,145 @@
+      subroutine fourg (data,n,isign,work)
+c     cooley-tukey fast fourier transform in usasi basic fortran.
+c     one-dimensional transform of complex data, arbitrary number of
+c     points.  n points can be transformed in time proportional to
+c     n*log(n) (for n non-prime), whereas other methods take n**2 time.
+c     furthermore, because fewer arithmetic operations are performed,
+c     less error is built up.  the transform done is--
+c     dimension data(n),transform(n),work(n)
+c     complex data,transform,work
+c     transform(k) = sum(data(j)*exp(isign*2*pi*i*(j-1)*(k-1)/n)),
+c     summed from j = 1 to n for all k from 1 to n.  the transform
+c     values are returned to data, replacing the input.  n may be any
+c     positive number, but it should be non-prime for speed.  isign =
+c     +1 or -1.  a -1 transform followed by a +1 one (or vice versa)
+c     returns n times the original data.  work is a one-dimensional
+c     complex array of length n used for working storage.
+c     running time is proportional to n * (sum of the prime factors of
+c     n).  for example, n = 1960, time is t0 * 1960 * (2+2+2+5+7+7).
+c     naive methods directly implementing the summation run in time
+c     proportional to n**2.  an upper bound for the rms relative error
+c     is 3 * 2**(-b) * sum(f**1.5), where b is the number of bits in
+c     the floating point fraction and the sum is over the prime
+c     factors of n.  written by norman brenner, mit lincoln laboratory,
+c     august 1968.  see--ieee transactions on audio and e
+c     (june 1967), special issue on the fast fourier transform.
+      dimension data(1), work(1), ifact(32)
+      twopi=6.283185307*float(isign)
+c     factor n into its prime factors, nfact in number.  for example,
+c     for n = 1960, nfact = 6 and ifact(if) = 2, 2, 2, 5, 7 and 7.
+      if=0
+      npart=n
+      do 50 id=1,n,2
+      idiv=id
+      if (id-1) 10,10,20
+ 10   idiv=2
+ 20   iquot=npart/idiv
+      if (npart-idiv*iquot) 40,30,40
+ 30   if=if+1
+      ifact(if)=idiv
+      npart=iquot
+
+      go to 20
+ 40   if (iquot-idiv) 60,60,50
+ 50   continue
+ 60   if (npart-1) 80,80,70
+ 70   if=if+1
+      ifact(if)=npart
+ 80   nfact=if
+c     shuffle the data array by reversing the digits of the index.
+c     replace data(i) by data(irev) for all i from 1 to n.  irev-1 is
+c     the integer whose digit representation in the multi-radix
+c     notation of factors ifact(if) is the reverse of the r
+c     of i-1.  for example, if all ifact(if) = 2, then for i-1 = 11001,
+c     irev-1 = 10011.  a work array of length n is needed.
+      ip0=2
+      ip3=ip0*n
+      iwork=1
+      i3rev=1
+      do 110 i3=1,ip3,ip0
+      work(iwork)=data(i3rev)
+      work(iwork+1)=data(i3rev+1)
+      ip2=ip3
+      do 100 if=1,nfact
+      ip1=ip2/ifact(if)
+      i3rev=i3rev+ip1
+      if (i3rev-ip2) 110,110,90
+ 90   i3rev=i3rev-ip2
+ 100  ip2=ip1
+ 110  iwork=iwork+ip0
+      iwork=1
+      do 120 i3=1,ip3,ip0
+      data(i3)=work(iwork)
+      data(i3+1)=work(iwork+1)
+ 120  iwork=iwork+ip0
+c     phase-shifted fourier transform of length ifact(if).
+c     iprod=ip1/ip0
+c     irem=n/(ifact(if)*iprod)
+c     dimension data(iprod,ifact(if),irem),work(ifact(if))
+c     complex data,work
+c     data(i1,j2,i3) = sum(data(i1,i2,i3) * w**(i2-1)), summed over
+c     i2 = 1 to ifact(if) for all i1 from 1 to iprod, j2 from 1 to
+
+c     ifact(if) and i3 from 1 to irem.
+c     w = exp(isign*2*pi*i*(i1-1+iprod*(j2-1))/(iprod*ifact(if))).
+      if=0
+      ip1=ip0
+ 130  if (ip1-ip3) 140,240,240
+ 140  if=if+1
+      ifcur=ifact(if)
+      ip2=ip1*ifcur
+      theta=twopi/float(ifcur)
+      sinth=sin(theta/2.)
+      rootr=-2.*sinth*sinth
+c     cos(theta)-1, for accuracy
+      rooti=sin(theta)
+      theta=twopi/float(ip2/ip0)
+      sinth=sin(theta/2.)
+      wstpr=-2.*sinth*sinth
+      wstpi=sin(theta)
+      wminr=1.
+      wmini=0.
+      do 230 i1=1,ip1,ip0
+      if (ifcur-2) 150,150,170
+ 150  do 160 i3=i1,ip3,ip2
+      j0=i3
+      j1=i3+ip1
+      tempr=wminr*data(j1)-wmini*data(j1+1)
+      tempi=wminr*data(j1+1)+wmini*data(j1)
+      data(j1)=data(j0)-tempr
+      data(j1+1)=data(j0+1)-tempi
+      data(j0)=data(j0)+tempr
+ 160  data(j0+1)=data(j0+1)+tempi
+      go to 220
+ 170  iwmax=ip0*ifcur
+      do 210 i3=i1,ip3,ip2
+      i2max=i3+ip2-ip1
+      wr=wminr
+      wi=wmini
+      do 200 iwork=1,iwmax,ip0
+      i2=i2max
+      sumr=data(i2)
+      sumi=data(i2+1)
+
+ 180  i2=i2-ip1
+      tempr=sumr
+      sumr=wr*sumr-wi*sumi+data(i2)
+      sumi=wr*sumi+wi*tempr+data(i2+1)
+      if (i2-i3) 190,190,180
+ 190  work(iwork)=sumr
+      work(iwork+1)=sumi
+      tempr=wr
+      wr=wr*rootr-wi*rooti+wr
+ 200  wi=tempr*rooti+wi*rootr+wi
+      iwork=1
+      do 210 i2=i3,i2max,ip1
+      data(i2)=work(iwork)
+      data(i2+1)=work(iwork+1)
+ 210  iwork=iwork+ip0
+ 220  tempr=wminr
+      wminr=wminr*wstpr-wmini*wstpi+wminr
+ 230  wmini=tempr*wstpi+wmini*wstpr+wmini
+      ip1=ip2
+      go to 130
+ 240  return
+      end

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/function.h
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/function.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/function.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,45 @@
+void *check_malloc(size_t);
+void *check_realloc(void *,size_t);
+FILE *fopfile(char*, char*);
+int opfile_ro(char *);
+int opfile(char *);
+int croptrfile(char *);
+int reed(int, void *, int);
+int rite(int, void *, int);
+
+void fft2d(struct complex *, int, int, int,float *,float *);
+void kfilt(struct complex *,int,int,float *,float *,float *,float *,long *,int);
+void init_slip(struct complex *,int,int,float *,float *);
+void taper_slip(struct complex *,int,int,float *,float *);
+
+void scale_slip(struct pointsource *,struct complex *,int,int,int,float *,float *,float *,float *,float *,struct velmodel *,float *,float *);
+
+void write_field(char *,struct pointsource *,char *,int,int,float *,float *);
+void write_spec(char *,float *,struct complex *,int,int,float *,float *,float *,float *,float *,float *,int);
+void write_avgspec(char *,float *,int,int,int,float *,float *);
+
+void default_velmodel(struct velmodel *);
+void read_velmodel(char *,struct velmodel *);
+void conv2vrup(struct velmodel *,struct velmodel *,float *,float *,float *,float *,float *);
+
+double frand(void);
+double sfrand(long *);
+
+int gen_brune_stf(float *,float *,float *,int,float *);
+int gen_ucsb_stf(float *,float *,float *,int,float *);
+int gen_2tri_stf(float *,float *,float *,int,float *,float *);
+
+void set_ll(float *,float *,float *,float *,float *,float *);
+void swap_in_place(int,char *);
+
+struct pointsource *read_ruppars(char *,struct pointsource *,float *,int *,int *,float *,float *,float *,float *,float *,float *,float *);
+struct pointsource *read_gsfpars(char *,struct pointsource *,struct generic_slip *,float *,float *,float *,float *);
+struct pointsource *set_ruppars(struct pointsource *,float *,int *,int *,float *,float *,float *,float *,float *,float *,float *,float *);
+
+void init_plane_srf(struct standrupformat *,struct generic_slip *,float *,float *,int,int,float *,float *,float *,float *,float *,float *,float *,float *,float *);
+void load_slip_srf(struct standrupformat *,struct stfpar *,struct pointsource *);
+void load_rupt_srf(struct standrupformat *,struct pointsource *,float *,float *);
+void write_srf(struct standrupformat *,char *,int);
+void write2gsf(struct generic_slip *,struct pointsource *,char *,char *);
+
+void free_srf_stf(struct standrupformat *);

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/generf.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/generf.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/generf.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,166 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+FILE *fpr, *fpw;
+float tlon0, tlat0, tlon1, tlat1;
+float lon0, lat0, lon1, lat1;
+float tclon, tclat, sn, se, nadj, eadj;
+float local_stk, local_len;
+float dsub, wid, dtop, avgdip, avgrak, mag;
+float *slon, *slat, *sstk, *sdip, *srak, *sdep, *ddep, *dlon, *dlat;
+int i, nstk, np, j, ndip;
+char infile[256], str[512];
+char outfile[256];
+
+float pi = 3.14159265;
+double rperd = 0.017453293;
+double dperr = 57.29577951;
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+
+setpar(ac,av);
+
+getpar("infile","s",infile);
+getpar("outfile","s",outfile);
+
+mstpar("wid","f",&wid);
+mstpar("dsub","f",&dsub);
+mstpar("dtop","f",&dtop);
+mstpar("dip","f",&avgdip);
+mstpar("rake","f",&avgrak);
+mstpar("mag","f",&mag);
+
+endpar();
+
+slon = NULL;
+slat = NULL;
+sstk = NULL;
+sdip = NULL;
+srak = NULL;
+sdep = NULL;
+ddep = NULL;
+dlon = NULL;
+dlat = NULL;
+
+if(strcmp(infile,"stdin") == 0)
+   fpr = stdin;
+else
+   fpr = fopfile(infile,"r");
+
+fgets(str,512,fpr);
+sscanf(str,"%f %f",&tlon0,&tlat0);
+np = 0;
+while(fgets(str,512,fpr) != NULL)
+   {
+   sscanf(str,"%f %f",&tlon1,&tlat1);
+
+   set_ne(&tlon0,&tlat0,&tlon1,&tlat1,&sn,&se);
+
+   local_len = sqrt(sn*sn + se*se);
+   nstk = (int)(local_len/dsub + 0.5);
+
+   if(sn != 0.0)
+      local_stk = dperr*atan(se/sn);
+   else
+      local_stk = 90.0;
+
+   if(sn < 0.0)
+      local_stk = local_stk + 180.0;
+
+   while(local_stk < 0.0)
+      local_stk = local_stk + 360.0;
+
+   while(local_stk >= 360.0)
+      local_stk = local_stk - 360.0;
+
+   nadj = 0.5*(local_len - nstk*dsub)*cos(local_stk*rperd);
+   eadj = 0.5*(local_len - nstk*dsub)*sin(local_stk*rperd);
+
+   set_ll(&tlon0,&tlat0,&lon0,&lat0,&nadj,&eadj);
+   tlon0 = lon0;
+   tlat0 = lat0;
+
+   slon = (float *)check_realloc(slon,(np+nstk)*sizeof(float));
+   slat = (float *)check_realloc(slat,(np+nstk)*sizeof(float));
+   sstk = (float *)check_realloc(sstk,(np+nstk)*sizeof(float));
+   sdip = (float *)check_realloc(sdip,(np+nstk)*sizeof(float));
+   srak = (float *)check_realloc(srak,(np+nstk)*sizeof(float));
+   sdep = (float *)check_realloc(sdep,(np+nstk)*sizeof(float));
+   ddep = (float *)check_realloc(ddep,(np+nstk)*sizeof(float));
+   dlon = (float *)check_realloc(dlon,(np+nstk)*sizeof(float));
+   dlat = (float *)check_realloc(dlat,(np+nstk)*sizeof(float));
+
+   nadj = dsub*cos(avgdip*rperd)*cos((local_stk+90.0)*rperd);
+   eadj = dsub*cos(avgdip*rperd)*sin((local_stk+90.0)*rperd);
+
+   set_ll(&tlon0,&tlat0,&dlon[np],&dlat[np],&nadj,&eadj);
+   dlon[np] = dlon[np] - tlon0;
+   dlat[np] = dlat[np] - tlat0;
+   ddep[np] = dsub*sin(avgdip*rperd);
+
+   for(i=0;i<nstk;i++)
+      {
+      nadj = (i+1)*dsub*cos(local_stk*rperd);
+      eadj = (i+1)*dsub*sin(local_stk*rperd);
+
+      set_ll(&tlon0,&tlat0,&lon1,&lat1,&nadj,&eadj);
+
+      tclon = 0.5*(lon0 + lon1);
+      tclat = 0.5*(lat0 + lat1);
+
+      dlon[i+np] = dlon[np];
+      dlat[i+np] = dlat[np];
+      ddep[i+np] = ddep[np];
+      slon[i+np] = tclon + 0.0*dlon[np];
+      slat[i+np] = tclat + 0.0*dlat[np];
+      sstk[i+np] = local_stk;
+      sdip[i+np] = avgdip;
+      srak[i+np] = avgrak;
+      sdep[i+np] = dtop + 0.5*ddep[np];
+
+      lon0 = lon1;
+      lat0 = lat1;
+      }
+
+   np = np + nstk;
+
+   tlon0 = tlon1;
+   tlat0 = tlat1;
+   }
+fclose(fpr);
+
+nstk = np;
+ndip = (int)(wid/dsub + 0.5);
+
+if(strcmp(infile,"stdout") == 0)
+   fpw = stdout;
+else
+   fpw = fopfile(outfile,"w");
+
+fprintf(fpw,"Probability = 1.4031105E-4\n");
+fprintf(fpw,"Magnitude = %.2f\n",mag);
+fprintf(fpw,"GridSpacing = %.2f\n",dsub);
+fprintf(fpw,"NumRows = %d\n",ndip);
+fprintf(fpw,"NumCols = %d\n",nstk);
+fprintf(fpw,"# Lat  Lon  Depth  Rake  Dip  Strike\n");
+
+for(j=0;j<ndip;j++)
+   {
+   for(i=0;i<nstk;i++)
+      {
+      fprintf(fpw,"%.5f\t%.5f\t%.5f\t%.1f\t%.1f\t%.3f\n",slat[i]+j*dlat[i],
+                                                         slon[i]+j*dlon[i],
+                                                         sdep[i]+j*ddep[i],
+                                                         srak[i],
+                                                         sdip[i],
+                                                         sstk[i]);
+      }
+   }
+
+fclose(fpw);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip
===================================================================
(Binary files differ)


Property changes on: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-mreal.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-mreal.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-mreal.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,339 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+FILE *fpr, *fpw;
+struct complex *cslip;
+float *aspec;
+float flen, fwid, dx, dy, amp0, amp, lamp;
+float dkx, dky, kx, ky, xx, yy, zz;
+float cosA, sinA, cosD, sinD, dd, sn, se;
+int nx, ny;
+int i, j, k, ip, nt6, it;
+char infile[256], slipfile[256], specfile[256], ruptfile[256], str[512];
+char outfile[256];
+
+float bigM;
+float xl, yl;
+
+int flip_at_surface = 0;
+int ny_in, ny_str, ny_end;
+
+float pi = 3.14159265;
+double rperd = 0.017453293;
+
+float mag;
+float side_taper = DEFAULT_SIDE_TAP;
+float bot_taper = DEFAULT_BOT_TAP;
+
+long seed = 0;
+int kmodel = 1;   /* default is somerville */
+
+float shypo, dhypo, avgstk, rake, rt;
+struct velmodel rvmod;
+double rayp, rupt_rad;
+
+float shypo_step = DEFAULT_SHYPO_STEP;
+float shypo_min_off = DEFAULT_SHYPO_MIN_OFF;
+float dhypo_frac = DEFAULT_DHYPO_FRAC;
+int slips_to_hypos = DEFAULT_SLIPS_TO_HYPOS;
+
+float sh0;
+int nh = -1;
+int ns = -1;
+int ih, js;
+
+float rvfrac = DEFAULT_VR_TO_VS_FRAC;
+float shal_vrup = DEFAULT_SHAL_VRUP_FRAC;
+float htol = 0.1;
+
+float smax, savg, sf;
+float tsfac = DEFAULT_TSFAC;
+
+float dtop, avgdip, mom, mag_med;
+struct velmodel vmod;
+char velfile[128];
+
+struct standrupformat srf;
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+float *stf, elon, elat;
+int ig, ntot;
+
+struct pointsource *psrc;
+struct stfpar stfparams;
+
+int outbin = 0;
+
+slipfile[0] = '\0';
+specfile[0] = '\0';
+ruptfile[0] = '\0';
+
+velfile[0] = '\0';
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+
+sprintf(srf.version,"1.0");
+
+stfparams.dt = DEFAULT_DT;
+stfparams.nt = NTMAX;
+
+setpar(ac,av);
+
+getpar("infile","s",infile);
+getpar("outfile","s",outfile);
+getpar("outbin","d",&outbin);
+
+getpar("velfile","s",velfile);
+
+/*
+mstpar("mag","f",&mag);
+
+mstpar("nx","d",&nx);
+mstpar("ny","d",&ny_in);
+mstpar("dx","f",&dx);
+mstpar("dy","f",&dy);
+
+mstpar("dtop","f",&dtop);
+mstpar("dip","f",&dip);
+mstpar("elon","f",&elon);
+mstpar("elat","f",&elat);
+mstpar("strike","f",&strike);
+mstpar("rake","f",&rake);
+*/
+
+getpar("dt","f",&stfparams.dt);
+getpar("nt","d",&stfparams.nt);
+
+getpar("shypo_step","f",&shypo_step);
+getpar("shypo_min_off","f",&shypo_min_off);
+getpar("dhypo_frac","f",&dhypo_frac);
+getpar("slips_to_hypos","d",&slips_to_hypos);
+getpar("ns","d",&ns);
+getpar("nh","d",&nh);
+
+getpar("rvfrac","f",&rvfrac);
+getpar("shal_vrup","f",&shal_vrup);
+getpar("tsfac","f",&tsfac);
+
+getpar("slipfile","s",slipfile);
+getpar("specfile","s",specfile);
+getpar("ruptfile","s",ruptfile);
+
+getpar("kmodel","d",&kmodel);
+getpar("flip_at_surface","d",&flip_at_surface);
+getpar("seed","d",&seed);
+getpar("side_taper","f",&side_taper);
+getpar("bot_taper","f",&bot_taper);
+
+endpar();
+
+psrc = NULL;
+psrc = read_ruppars(infile,psrc,&mag,&nx,&ny_in,&dx,&dy,&dtop,&avgstk,&avgdip,&elon,&elat);
+
+flen = nx*dx;
+fwid = ny_in*dy;
+
+if(nh < 0)
+   nh = (int)((flen-2.0*shypo_min_off)/shypo_step) + 1;
+if(ns < 0)
+   ns = slips_to_hypos*nh;
+
+sh0 = 0.5*(flen - (nh-1)*shypo_step);
+dhypo = dhypo_frac*fwid;
+
+bigM = log(10.0);
+mom = exp(bigM*1.5*(mag + 10.7));
+mag_med = 3.98 + log(flen*fwid)/bigM;
+
+fprintf(stderr,"mag= %.2f median mag= %.2f nslip= %d nhypo= %d\n",mag,mag_med,ns,nh);
+
+/*
+   For now, set parameters here, later will read in from 'infile'
+
+psrc = (struct pointsource *)check_malloc(nx*ny_in*sizeof(struct pointsource));
+
+cosA = cos(strike*rperd);
+sinA = sin(strike*rperd);
+cosD = cos(dip*rperd);
+sinD = sin(dip*rperd);
+for(j=0;j<ny_in;j++)
+   {
+   dd = (j + 0.5)*dy;
+   yy = dd*cosD;
+   zz = dtop + dd*sinD;
+   for(i=0;i<nx;i++)
+      {
+      ip = i + j*nx;
+      xx = (i+0.5)*dx - 0.5*flen;
+
+      se = xx*sinA + yy*cosA;
+      sn = xx*cosA - yy*sinA;
+      set_ll(&elon,&elat,&psrc[ip].lon,&psrc[ip].lat,&sn,&se);
+
+      psrc[ip].dep = zz;
+      psrc[ip].stk = strike;
+      psrc[ip].dip = dip;
+      psrc[ip].rak = rake;
+      psrc[ip].area = dx*dy*1.0e+10;
+      }
+   }
+*/
+
+init_plane_srf(&srf,&elon,&elat,nx,ny_in,&flen,&fwid,&dx,&dy,&avgstk,&avgdip,&dtop,&shypo,&dhypo);
+
+if(velfile[0] != '\0')
+   read_velmodel(velfile,&vmod);
+else
+   default_velmodel(&vmod);
+
+conv2vrup(&vmod,&rvmod,&avgdip,&dtop,&fwid,&rvfrac,&shal_vrup);
+
+if(kmodel != MAI_FLAG)
+   kmodel = SOMERVILLE_FLAG;
+
+/* generic fault length/width scaling */
+xl = flen;
+yl = fwid;
+
+if(xl > 2.0*yl)
+   xl = 2.0*yl;
+if(yl > 2.0*xl)
+   yl = 2.0*xl;
+
+/* mai scaling */
+xl = exp(bigM*(0.5*mag_med - 2.50));
+yl = exp(bigM*(0.3333*mag_med - 1.50));
+
+/* somerville scaling */
+xl = exp(bigM*(0.5*mag_med - 1.72));
+yl = exp(bigM*(0.5*mag_med - 1.93));
+
+/* modified somerville scaling */
+xl = exp(bigM*(0.5*mag_med - 2.00));
+yl = exp(bigM*(0.5*mag_med - 2.00));
+
+ny = ny_in;
+if(flip_at_surface)
+   {
+   ny = 2*ny_in;
+   xl = sqrt(2.0)*xl;
+   yl = sqrt(2.0)*yl;
+   }
+
+dkx = 1.0/(nx*dx);
+dky = 1.0/(ny*dy);
+
+/* rise time from somerville */
+stfparams.trise = 1.8e-09*exp(log(mom)/3.0);
+
+cslip = (struct complex *) check_malloc (nx*ny*sizeof(struct complex));
+
+if(specfile[0] != '\0')
+   {
+   aspec = (float *) check_malloc (nx*ny*sizeof(float));
+   for(j=0;j<nx*ny;j++)
+      aspec[j] = 0.0;
+   }
+
+for(js=0;js<ns;js++)    /* loop over slip realizations */
+   {
+   init_slip(cslip,nx,ny,&side_taper,&bot_taper);
+
+   fft2d(cslip,nx,ny,-1,&dx,&dy);
+   kfilt(cslip,nx,ny,&dkx,&dky,&xl,&yl,&seed,kmodel);
+   fft2d(cslip,nx,ny,1,&dkx,&dky);
+
+   taper_slip(cslip,nx,ny,&side_taper,&bot_taper);
+
+/*
+   truncate any negative slip values => should double check that spectra is
+   not changed too much
+*/
+
+   for(j=0;j<ny*nx;j++)
+      {
+      if(cslip[j].re < 0.0)
+         cslip[j].re = 0.0;
+      }
+
+   ny_str = 0;
+   ny_end = ny;
+   if(flip_at_surface)
+      ny_str = ny_in;
+
+/* check moment and scale slip */
+
+   scale_slip(psrc,cslip,nx,ny_in,ny_str,&dx,&dy,&dtop,&avgdip,&mom,&vmod,&savg,&smax);
+
+   fprintf(stderr,"mom= %13.5e avgslip= %.0f maxslip= %.0f\n",mom,savg,smax);
+
+   if(slipfile[0] != '\0')
+      {
+      sprintf(str,"%s-s%.4d",slipfile,js);
+      write_field(str,psrc,"slip",nx,ny_in,&dx,&dy);
+      }
+
+   if(specfile[0] != '\0')
+      {
+      sprintf(str,"%s-s%.4d",specfile,js);
+      write_spec(str,aspec,cslip,nx,ny,&dx,&dy,&dkx,&dky,&xl,&yl,kmodel);
+      }
+
+   load_slip_srf(&srf,&stfparams,psrc);
+
+   for(ih=0;ih<nh;ih++)    /* loop over hypocenter realizations */
+      {
+      shypo = sh0 + ih*shypo_step - 0.5*flen;
+
+/* calculate rupture time */
+
+      if((smax-savg) != (float)(0.0))
+         sf = 1.0/(smax-savg);
+      else
+         tsfac = sf = 0.0;
+
+      for(j=0;j<ny_in;j++)
+         {
+         yy = (j + 0.5)*dy;
+         for(i=0;i<nx;i++)
+            {
+            xx = (i+0.5)*dx - 0.5*flen;
+
+            get_rupt(&rvmod,&htol,&dhypo,&yy,&shypo,&xx,&rayp,&rupt_rad,&rt);
+            psrc[i+j*nx].rupt = rt + sf*tsfac*(psrc[i + j*nx].slip - savg);
+            }
+         }
+
+      if(ruptfile[0] != '\0')
+         {
+         sprintf(str,"%s-s%.4d-h%.4d",ruptfile,js,ih);
+         write_field(str,psrc,"rupt",nx,ny_in,&dx,&dy);
+         }
+
+      load_rupt_srf(&srf,psrc,&shypo,&dhypo);
+
+      if(strcmp(outfile,"stdout") == 0)
+         sprintf(str,"stdout");
+      else
+         sprintf(str,"%s-s%.4d-h%.4d",outfile,js,ih);
+
+      write_srf(&srf,str,outbin);
+      }
+
+   free_srf_stf(&srf);
+   }
+
+if(specfile[0] != '\0')
+   {
+   sprintf(str,"%s-s_avg",specfile);
+   write_avgspec(str,aspec,ns,nx,ny,&dkx,&dky);
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-mreal_OLD-IO.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-mreal_OLD-IO.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-mreal_OLD-IO.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,326 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+FILE *fpr, *fpw;
+struct complex *cslip;
+float *aspec;
+float flen, fwid, dx, dy, amp0, amp, lamp;
+float dkx, dky, kx, ky, xx, yy, zz;
+float cosA, sinA, cosD, sinD, dd, sn, se;
+int nx, ny;
+int i, j, k, ip, nt6, it;
+char infile[256], slipfile[256], specfile[256], ruptfile[256], str[512];
+char outfile[256];
+
+float bigM;
+float xl, yl;
+
+int flip_at_surface = 0;
+int ny_in, ny_str, ny_end;
+
+float pi = 3.14159265;
+double rperd = 0.017453293;
+
+float mag;
+float side_taper = DEFAULT_SIDE_TAP;
+float bot_taper = DEFAULT_BOT_TAP;
+
+long seed = 0;
+int kmodel = 1;   /* default is somerville */
+
+float shypo, dhypo, strike, rake, rt;
+struct velmodel rvmod;
+double rayp, rupt_rad;
+
+float shypo_step = DEFAULT_SHYPO_STEP;
+float shypo_min_off = DEFAULT_SHYPO_MIN_OFF;
+float dhypo_frac = DEFAULT_DHYPO_FRAC;
+int slips_to_hypos = DEFAULT_SLIPS_TO_HYPOS;
+
+float sh0;
+int nh = -1;
+int ns = -1;
+int ih, js;
+
+float rvfrac = DEFAULT_VR_TO_VS_FRAC;
+float shal_vrup = DEFAULT_SHAL_VRUP_FRAC;
+float htol = 0.1;
+
+float smax, savg, sf;
+float tsfac = DEFAULT_TSFAC;
+
+float dtop, dip, mom;
+struct velmodel vmod;
+char velfile[128];
+
+struct standrupformat srf;
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+float area;
+float *stf, elon, elat;
+int ig, ntot;
+
+struct pointsource *psrc;
+struct stfpar stfparams;
+
+int outbin = 0;
+
+slipfile[0] = '\0';
+specfile[0] = '\0';
+ruptfile[0] = '\0';
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+
+sprintf(srf.version,"1.0");
+
+stfparams.nt = NTMAX;
+
+setpar(ac,av);
+
+mstpar("mag","f",&mag);
+
+mstpar("nx","d",&nx);
+mstpar("ny","d",&ny_in);
+mstpar("dx","f",&dx);
+mstpar("dy","f",&dy);
+
+mstpar("dtop","f",&dtop);
+mstpar("dip","f",&dip);
+mstpar("elon","f",&elon);
+mstpar("elat","f",&elat);
+mstpar("strike","f",&strike);
+mstpar("rake","f",&rake);
+mstpar("dt","f",&stfparams.dt);
+getpar("nt","d",&stfparams.nt);
+
+getpar("shypo_step","f",&shypo_step);
+getpar("shypo_min_off","f",&shypo_min_off);
+getpar("dhypo_frac","f",&dhypo_frac);
+getpar("slips_to_hypos","d",&slips_to_hypos);
+getpar("ns","d",&ns);
+getpar("nh","d",&nh);
+
+getpar("rvfrac","f",&rvfrac);
+getpar("shal_vrup","f",&shal_vrup);
+getpar("tsfac","f",&tsfac);
+
+getpar("slipfile","s",slipfile);
+getpar("specfile","s",specfile);
+getpar("ruptfile","s",ruptfile);
+
+getpar("infile","s",infile);
+getpar("outfile","s",outfile);
+getpar("outbin","d",&outbin);
+
+mstpar("velfile","s",velfile);
+
+getpar("kmodel","d",&kmodel);
+getpar("flip_at_surface","d",&flip_at_surface);
+getpar("seed","d",&seed);
+getpar("side_taper","f",&side_taper);
+getpar("bot_taper","f",&bot_taper);
+
+endpar();
+
+flen = nx*dx;
+fwid = ny_in*dy;
+
+if(nh < 0)
+   nh = (int)((flen-2.0*shypo_min_off)/shypo_step) + 1;
+if(ns < 0)
+   ns = slips_to_hypos*nh;
+
+sh0 = 0.5*(flen - (nh-1)*shypo_step);
+dhypo = dhypo_frac*fwid;
+
+fprintf(stderr,"mag= %.2f nslip= %d nhypo= %d\n",mag,ns,nh);
+
+/*
+   For now, set parameters here, later will read in from 'infile'
+*/
+
+psrc = (struct pointsource *)check_malloc(nx*ny_in*sizeof(struct pointsource));
+
+cosA = cos(strike*rperd);
+sinA = sin(strike*rperd);
+cosD = cos(dip*rperd);
+sinD = sin(dip*rperd);
+for(j=0;j<ny_in;j++)
+   {
+   dd = (j + 0.5)*dy;
+   yy = dd*cosD;
+   zz = dtop + dd*sinD;
+   for(i=0;i<nx;i++)
+      {
+      ip = i + j*nx;
+      xx = (i+0.5)*dx - 0.5*flen;
+
+      se = xx*sinA + yy*cosA;
+      sn = xx*cosA - yy*sinA;
+      set_ll(&elon,&elat,&psrc[ip].lon,&psrc[ip].lat,&sn,&se);
+
+      psrc[ip].dep = zz;
+      psrc[ip].stk = strike;
+      psrc[ip].dip = dip;
+      psrc[ip].rak = rake;
+      psrc[ip].area = dx*dy*1.0e+10;
+      }
+   }
+
+init_plane_srf(&srf,&elon,&elat,nx,ny_in,&flen,&fwid,&dx,&dy,&strike,&dip,&dtop,&shypo,&dhypo);
+
+read_velmodel(velfile,&vmod);
+conv2vrup(&vmod,&rvmod,&dip,&dtop,&fwid,&rvfrac,&shal_vrup);
+
+if(kmodel != MAI_FLAG)
+   kmodel = SOMERVILLE_FLAG;
+
+bigM = log(10.0);
+mom = exp(bigM*1.5*(mag + 10.7));
+
+/* generic fault length/width scaling */
+xl = flen;
+yl = fwid;
+
+if(xl > 2.0*yl)
+   xl = 2.0*yl;
+if(yl > 2.0*xl)
+   yl = 2.0*xl;
+
+/* mai scaling */
+xl = exp(bigM*(0.5*mag - 2.50));
+yl = exp(bigM*(0.3333*mag - 1.50));
+
+/* somerville scaling */
+xl = exp(bigM*(0.5*mag - 1.72));
+yl = exp(bigM*(0.5*mag - 1.93));
+
+/* modified somerville scaling */
+xl = exp(bigM*(0.5*mag - 2.00));
+yl = exp(bigM*(0.5*mag - 2.00));
+
+ny = ny_in;
+if(flip_at_surface)
+   {
+   ny = 2*ny_in;
+   xl = sqrt(2.0)*xl;
+   yl = sqrt(2.0)*yl;
+   }
+
+dkx = 1.0/(nx*dx);
+dky = 1.0/(ny*dy);
+
+/* rise time from somerville */
+stfparams.trise = 1.8e-09*exp(log(mom)/3.0);
+
+cslip = (struct complex *) check_malloc (nx*ny*sizeof(struct complex));
+
+if(specfile[0] != '\0')
+   {
+   aspec = (float *) check_malloc (nx*ny*sizeof(float));
+   for(j=0;j<nx*ny;j++)
+      aspec[j] = 0.0;
+   }
+
+for(js=0;js<ns;js++)    /* loop over slip realizations */
+   {
+   init_slip(cslip,nx,ny,&side_taper,&bot_taper);
+
+   fft2d(cslip,nx,ny,-1,&dx,&dy);
+   kfilt(cslip,nx,ny,&dkx,&dky,&xl,&yl,&seed,kmodel);
+   fft2d(cslip,nx,ny,1,&dkx,&dky);
+
+   taper_slip(cslip,nx,ny,&side_taper,&bot_taper);
+
+/*
+   truncate any negative slip values => should double check that spectra is
+   not changed too much
+*/
+
+   for(j=0;j<ny*nx;j++)
+      {
+      if(cslip[j].re < 0.0)
+         cslip[j].re = 0.0;
+      }
+
+   ny_str = 0;
+   ny_end = ny;
+   if(flip_at_surface)
+      ny_str = ny_in;
+
+/* check moment and scale slip */
+
+   scale_slip(psrc,cslip,nx,ny_in,ny_str,&dx,&dy,&dtop,&dip,&mom,&vmod,&savg,&smax);
+
+   fprintf(stderr,"mag= %.2f mom= %13.5e avgslip= %.0f maxslip= %.0f\n",mag,mom,savg,smax);
+
+   if(slipfile[0] != '\0')
+      {
+      sprintf(str,"%s-s%.4d",slipfile,js);
+      write_field(str,psrc,"slip",nx,ny_in,&dx,&dy);
+      }
+
+   if(specfile[0] != '\0')
+      {
+      sprintf(str,"%s-s%.4d",specfile,js);
+      write_spec(str,aspec,cslip,nx,ny,&dx,&dy,&dkx,&dky,&xl,&yl,kmodel);
+      }
+
+   load_slip_srf(&srf,&stfparams,psrc);
+
+   for(ih=0;ih<nh;ih++)    /* loop over hypocenter realizations */
+      {
+      shypo = sh0 + ih*shypo_step - 0.5*flen;
+
+/* calculate rupture time */
+
+      if((smax-savg) != (float)(0.0))
+         sf = 1.0/(smax-savg);
+      else
+         tsfac = sf = 0.0;
+
+      for(j=0;j<ny_in;j++)
+         {
+         yy = (j + 0.5)*dy;
+         for(i=0;i<nx;i++)
+            {
+            xx = (i+0.5)*dx - 0.5*flen;
+
+            get_rupt(&rvmod,&htol,&dhypo,&yy,&shypo,&xx,&rayp,&rupt_rad,&rt);
+            psrc[i+j*nx].rupt = rt + sf*tsfac*(psrc[i + j*nx].slip - savg);
+            }
+         }
+
+      if(ruptfile[0] != '\0')
+         {
+         sprintf(str,"%s-s%.4d-h%.4d",ruptfile,js,ih);
+         write_field(str,psrc,"rupt",nx,ny_in,&dx,&dy);
+         }
+
+      load_rupt_srf(&srf,psrc,&shypo,&dhypo);
+
+      if(strcmp(outfile,"stdout") == 0)
+         sprintf(str,"stdout");
+      else
+         sprintf(str,"%s-s%.4d-h%.4d",outfile,js,ih);
+
+      write_srf(&srf,str,outbin);
+      }
+
+   free_srf_stf(&srf);
+   }
+
+if(specfile[0] != '\0')
+   {
+   sprintf(str,"%s-s_avg",specfile);
+   write_avgspec(str,aspec,ns,nx,ny,&dkx,&dky);
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-v2.0.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-v2.0.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-v2.0.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,340 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+FILE *fpr, *fpw;
+struct complex *cslip;
+float *aspec;
+float flen, fwid, dx, dy, amp0, amp, lamp;
+float dkx, dky, kx, ky, xx, yy, zz;
+float cosA, sinA, cosD, sinD, dd, sn, se;
+int nx, ny;
+int i, j, k, ip, nt6, it;
+char infile[256], slipfile[256], specfile[256], ruptfile[256], str[512];
+char outfile[256];
+
+float bigM;
+float xl, yl;
+
+int flip_at_surface = -1;
+int ny_in, ny_str, ny_end;
+
+float pi = 3.14159265;
+double rperd = 0.017453293;
+
+float mag;
+float side_taper = DEFAULT_SIDE_TAP;
+float bot_taper = DEFAULT_BOT_TAP;
+
+long seed = 0;
+int kmodel = 1;   /* default is somerville */
+
+float shypo = -1.0e+15;
+float dhypo = -1.0e+15;
+float avgstk, rake, rt;
+struct velmodel rvmod;
+double rayp, rupt_rad;
+
+float shypo_step = DEFAULT_SHYPO_STEP;
+float shypo_min_off = DEFAULT_SHYPO_MIN_OFF;
+float dhypo_frac = DEFAULT_DHYPO_FRAC;
+int slips_to_hypos = DEFAULT_SLIPS_TO_HYPOS;
+
+float sh0;
+int nh = -1;
+int ns = -1;
+int ih, js;
+
+float rvfrac = DEFAULT_VR_TO_VS_FRAC;
+float shal_vrup = DEFAULT_SHAL_VRUP_FRAC;
+float htol = 0.1;
+
+float smax, sf;
+float savg = -1.0;
+float tsfac = DEFAULT_TSFAC;
+
+float dtop, avgdip, mom, mag_med;
+struct velmodel vmod;
+char velfile[128];
+
+int read_erf = 1;
+
+struct standrupformat srf;
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+struct generic_slip gslip;
+
+float *stf, elon, elat;
+int ig, ntot;
+
+struct pointsource *psrc;
+struct stfpar stfparams;
+
+int outbin = 0;
+
+slipfile[0] = '\0';
+specfile[0] = '\0';
+ruptfile[0] = '\0';
+
+velfile[0] = '\0';
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+
+sprintf(srf.version,"1.0");
+
+stfparams.dt = DEFAULT_DT;
+stfparams.nt = NTMAX;
+
+setpar(ac,av);
+
+getpar("infile","s",infile);
+getpar("outfile","s",outfile);
+getpar("outbin","d",&outbin);
+
+getpar("velfile","s",velfile);
+
+getpar("read_erf","d",&read_erf);
+
+if(read_erf == 0)
+   {
+   mstpar("mag","f",&mag);
+
+   mstpar("nx","d",&nx);
+   mstpar("ny","d",&ny_in);
+   mstpar("dx","f",&dx);
+   mstpar("dy","f",&dy);
+
+   mstpar("dtop","f",&dtop);
+   mstpar("strike","f",&avgstk);
+   mstpar("dip","f",&avgdip);
+   mstpar("rake","f",&rake);
+   mstpar("elon","f",&elon);
+   mstpar("elat","f",&elat);
+   }
+
+getpar("dt","f",&stfparams.dt);
+getpar("nt","d",&stfparams.nt);
+
+getpar("shypo_step","f",&shypo_step);
+getpar("shypo_min_off","f",&shypo_min_off);
+getpar("dhypo_frac","f",&dhypo_frac);
+getpar("slips_to_hypos","d",&slips_to_hypos);
+getpar("ns","d",&ns);
+getpar("nh","d",&nh);
+
+getpar("shypo","f",&shypo);
+getpar("dhypo","f",&dhypo);
+
+getpar("rvfrac","f",&rvfrac);
+getpar("shal_vrup","f",&shal_vrup);
+getpar("tsfac","f",&tsfac);
+
+getpar("slipfile","s",slipfile);
+getpar("specfile","s",specfile);
+getpar("ruptfile","s",ruptfile);
+
+getpar("kmodel","d",&kmodel);
+getpar("flip_at_surface","d",&flip_at_surface);
+getpar("seed","d",&seed);
+getpar("side_taper","f",&side_taper);
+getpar("bot_taper","f",&bot_taper);
+
+endpar();
+
+psrc = NULL;
+gslip.np = 0;
+
+if(read_erf == 1)
+   psrc = read_ruppars(infile,psrc,&mag,&nx,&ny_in,&dx,&dy,&dtop,&avgstk,&avgdip,&elon,&elat);
+else
+   psrc = set_ruppars(psrc,&mag,&nx,&ny_in,&dx,&dy,&dtop,&avgstk,&avgdip,&rake,&elon,&elat);
+
+flen = nx*dx;
+fwid = ny_in*dy;
+
+if(nh < 0)
+   nh = (int)((flen-2.0*shypo_min_off)/shypo_step) + 1;
+if(ns < 0)
+   {
+   ns = slips_to_hypos*nh;
+   if(nx == 1 && ny_in == 1)
+      ns = 1;
+   }
+
+sh0 = 0.5*(flen - (nh-1)*shypo_step);
+if(dhypo < -1.0e+14)
+   dhypo = dhypo_frac*fwid;
+
+bigM = log(10.0);
+mom = exp(bigM*1.5*(mag + 10.7));
+mag_med = 3.98 + log(flen*fwid)/bigM;
+/* update 12/2005 */
+mag_med = 3.87 + 1.05*log(flen*fwid)/bigM;
+
+fprintf(stderr,"mag= %.2f median mag= %.2f nslip= %d nhypo= %d\n",mag,mag_med,ns,nh);
+
+init_plane_srf(&srf,&gslip,&elon,&elat,nx,ny_in,&flen,&fwid,&dx,&dy,&avgstk,&avgdip,&dtop,&shypo,&dhypo);
+
+if(velfile[0] != '\0')
+   read_velmodel(velfile,&vmod);
+else
+   default_velmodel(&vmod);
+
+conv2vrup(&vmod,&rvmod,&avgdip,&dtop,&fwid,&rvfrac,&shal_vrup);
+
+if(kmodel != MAI_FLAG)
+   kmodel = SOMERVILLE_FLAG;
+
+/* generic fault length/width scaling */
+xl = flen;
+yl = fwid;
+
+if(xl > 2.0*yl)
+   xl = 2.0*yl;
+if(yl > 2.0*xl)
+   yl = 2.0*xl;
+
+/* mai scaling */
+xl = exp(bigM*(0.5*mag_med - 2.50));
+yl = exp(bigM*(0.3333*mag_med - 1.50));
+
+/* somerville scaling */
+xl = exp(bigM*(0.5*mag_med - 1.72));
+yl = exp(bigM*(0.5*mag_med - 1.93));
+
+/* modified somerville scaling */
+xl = exp(bigM*(0.5*mag_med - 2.00));
+yl = exp(bigM*(0.5*mag_med - 2.00));
+
+if(flip_at_surface < 0)
+   {
+   if(dtop <= 0.100001)
+      flip_at_surface = 1;
+   else
+      flip_at_surface = 0;
+   }
+
+ny = ny_in;
+if(flip_at_surface == 1)
+   {
+   ny = 2*ny_in;
+   xl = sqrt(2.0)*xl;
+   yl = sqrt(2.0)*yl;
+   }
+
+dkx = 1.0/(nx*dx);
+dky = 1.0/(ny*dy);
+
+/* rise time from somerville */
+stfparams.trise = 1.8e-09*exp(log(mom)/3.0);
+
+cslip = (struct complex *) check_malloc (nx*ny*sizeof(struct complex));
+
+if(specfile[0] != '\0')
+   {
+   aspec = (float *) check_malloc (nx*ny*sizeof(float));
+   for(j=0;j<nx*ny;j++)
+      aspec[j] = 0.0;
+   }
+
+for(js=0;js<ns;js++)    /* loop over slip realizations */
+   {
+   init_slip(cslip,nx,ny,&side_taper,&bot_taper);
+
+   fft2d(cslip,nx,ny,-1,&dx,&dy);
+   kfilt(cslip,nx,ny,&dkx,&dky,&xl,&yl,&seed,kmodel);
+   fft2d(cslip,nx,ny,1,&dkx,&dky);
+
+   taper_slip(cslip,nx,ny,&side_taper,&bot_taper);
+
+/*
+   truncate any negative slip values => should double check that spectra is
+   not changed too much
+*/
+
+   for(j=0;j<ny*nx;j++)
+      {
+      if(cslip[j].re < 0.0)
+         cslip[j].re = 0.0;
+      }
+
+   ny_str = 0;
+   ny_end = ny;
+   if(flip_at_surface == 1)
+      ny_str = ny_in;
+
+/* check moment and scale slip */
+
+   scale_slip(psrc,cslip,nx,ny_in,ny_str,&dx,&dy,&dtop,&avgdip,&mom,&vmod,&savg,&smax);
+
+   fprintf(stderr,"mom= %13.5e avgslip= %.0f maxslip= %.0f\n",mom,savg,smax);
+
+   if(slipfile[0] != '\0')
+      {
+      sprintf(str,"%s-s%.4d",slipfile,js);
+      write_field(str,psrc,"slip",nx,ny_in,&dx,&dy);
+      }
+
+   if(specfile[0] != '\0')
+      {
+      sprintf(str,"%s-s%.4d",specfile,js);
+      write_spec(str,aspec,cslip,nx,ny,&dx,&dy,&dkx,&dky,&xl,&yl,kmodel);
+      }
+
+   load_slip_srf(&srf,&stfparams,psrc);
+
+   for(ih=0;ih<nh;ih++)    /* loop over hypocenter realizations */
+      {
+      if(ih != 0 || shypo < -1.0e+14)
+         shypo = sh0 + ih*shypo_step - 0.5*flen;
+
+/* calculate rupture time */
+
+      if((smax-savg) != (float)(0.0))
+         sf = 1.0/(smax-savg);
+      else
+         tsfac = sf = 0.0;
+
+      for(j=0;j<ny_in;j++)
+         {
+         yy = (j + 0.5)*dy;
+         for(i=0;i<nx;i++)
+            {
+            xx = (i+0.5)*dx - 0.5*flen;
+
+            get_rupt(&rvmod,&htol,&dhypo,&yy,&shypo,&xx,&rayp,&rupt_rad,&rt);
+            psrc[i+j*nx].rupt = rt + sf*tsfac*(psrc[i + j*nx].slip - savg);
+            }
+         }
+
+      if(ruptfile[0] != '\0')
+         {
+         sprintf(str,"%s-s%.4d-h%.4d",ruptfile,js,ih);
+         write_field(str,psrc,"rupt",nx,ny_in,&dx,&dy);
+         }
+
+      load_rupt_srf(&srf,psrc,&shypo,&dhypo);
+
+      if(strcmp(outfile,"stdout") == 0)
+         sprintf(str,"stdout");
+      else
+         sprintf(str,"%s-s%.4d-h%.4d",outfile,js,ih);
+
+      write_srf(&srf,str,outbin);
+      }
+
+   free_srf_stf(&srf);
+   }
+
+if(specfile[0] != '\0')
+   {
+   sprintf(str,"%s-s_avg",specfile);
+   write_avgspec(str,aspec,ns,nx,ny,&dkx,&dky);
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-v2.1.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-v2.1.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip-v2.1.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,397 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+/*
+
+   03/06/2000: version 2.1
+
+   * Added option to read input fault description from Generic Slip Format (GSF)
+     file.
+
+   * Added option to specify "Brune" type STF.
+
+*/
+
+main(int ac,char **av)
+{
+FILE *fpr, *fpw;
+struct complex *cslip;
+float *aspec;
+float flen, fwid, dx, dy, amp0, amp, lamp;
+float dkx, dky, kx, ky, xx, yy, zz;
+float cosA, sinA, cosD, sinD, dd, sn, se;
+int nx, ny;
+int i, j, k, ip, nt6, it;
+char infile[256], slipfile[256], specfile[256], ruptfile[256], str[512];
+char outfile[256];
+
+float bigM;
+float xl, yl;
+
+int flip_at_surface = -1;
+int stretch_kcorner = 0;
+int ny_in, ny_str, ny_end;
+
+float pi = 3.14159265;
+double rperd = 0.017453293;
+
+float mag;
+float side_taper = DEFAULT_SIDE_TAP;
+float bot_taper = DEFAULT_BOT_TAP;
+
+long seed = 0;
+int kmodel = 1;   /* default is somerville */
+
+float shypo = -1.0e+15;
+float dhypo = -1.0e+15;
+float avgstk, rake, rt, tsmin;
+struct velmodel rvmod;
+double rayp, rupt_rad;
+
+float shypo_step = DEFAULT_SHYPO_STEP;
+float shypo_min_off = DEFAULT_SHYPO_MIN_OFF;
+float dhypo_frac = DEFAULT_DHYPO_FRAC;
+int slips_to_hypos = DEFAULT_SLIPS_TO_HYPOS;
+
+float sh0;
+int nh = -1;
+int ns = -1;
+int ih, js;
+
+float rvfrac = DEFAULT_VR_TO_VS_FRAC;
+float shal_vrup = DEFAULT_SHAL_VRUP_FRAC;
+float htol = 0.1;
+
+float smax, sf;
+float savg = -1.0;
+float tsfac = DEFAULT_TSFAC;
+
+float dtop, avgdip, mom, mag_med;
+struct velmodel vmod;
+char velfile[128];
+
+int read_erf = 0;
+
+struct standrupformat srf;
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+int read_gsf = 0;
+int write_gsf = 0;
+
+struct generic_slip gslip;
+
+float *stf, elon, elat;
+int ig, ntot;
+
+struct pointsource *psrc;
+struct stfpar stfparams;
+
+int outbin = 0;
+
+slipfile[0] = '\0';
+specfile[0] = '\0';
+ruptfile[0] = '\0';
+
+velfile[0] = '\0';
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+
+sprintf(srf.version,"1.0");
+
+stfparams.dt = DEFAULT_DT;
+stfparams.nt = NTMAX;
+stfparams.trise = -1.0;
+sprintf(stfparams.stype,"urs");  /* default is URS 2tri STF */
+
+setpar(ac,av);
+
+getpar("infile","s",infile);
+getpar("outfile","s",outfile);
+getpar("outbin","d",&outbin);
+
+getpar("velfile","s",velfile);
+
+getpar("read_erf","d",&read_erf);
+getpar("read_gsf","d",&read_gsf);
+
+if(read_gsf == 1)
+   {
+   mstpar("mag","f",&mag);
+
+   mstpar("nx","d",&nx);
+   mstpar("ny","d",&ny_in);
+   getpar("write_gsf","d",&write_gsf);
+   }
+
+if(read_erf == 0 && read_gsf == 0)
+   {
+   mstpar("mag","f",&mag);
+
+   mstpar("nx","d",&nx);
+   mstpar("ny","d",&ny_in);
+   mstpar("dx","f",&dx);
+   mstpar("dy","f",&dy);
+
+   mstpar("dtop","f",&dtop);
+   mstpar("strike","f",&avgstk);
+   mstpar("dip","f",&avgdip);
+   mstpar("rake","f",&rake);
+   mstpar("elon","f",&elon);
+   mstpar("elat","f",&elat);
+   }
+
+getpar("dt","f",&stfparams.dt);
+getpar("nt","d",&stfparams.nt);
+getpar("risetime","f",&stfparams.trise);
+getpar("stype","s",stfparams.stype);
+
+getpar("shypo_step","f",&shypo_step);
+getpar("shypo_min_off","f",&shypo_min_off);
+getpar("dhypo_frac","f",&dhypo_frac);
+getpar("slips_to_hypos","d",&slips_to_hypos);
+getpar("ns","d",&ns);
+getpar("nh","d",&nh);
+
+getpar("shypo","f",&shypo);
+getpar("dhypo","f",&dhypo);
+
+getpar("rvfrac","f",&rvfrac);
+getpar("shal_vrup","f",&shal_vrup);
+getpar("tsfac","f",&tsfac);
+
+getpar("savg","f",&savg);
+
+getpar("slipfile","s",slipfile);
+getpar("specfile","s",specfile);
+getpar("ruptfile","s",ruptfile);
+
+getpar("kmodel","d",&kmodel);
+getpar("flip_at_surface","d",&flip_at_surface);
+getpar("stretch_kcorner","d",&stretch_kcorner);
+getpar("seed","d",&seed);
+getpar("side_taper","f",&side_taper);
+getpar("bot_taper","f",&bot_taper);
+
+endpar();
+
+psrc = NULL;
+gslip.np = -1;
+gslip.spar = NULL;
+
+if(read_erf == 1)
+   psrc = read_ruppars(infile,psrc,&mag,&nx,&ny_in,&dx,&dy,&dtop,&avgstk,&avgdip,&elon,&elat);
+else if(read_gsf == 1)
+   psrc = read_gsfpars(infile,psrc,&gslip,&dx,&dy,&dtop,&avgdip);
+else
+   psrc = set_ruppars(psrc,&mag,&nx,&ny_in,&dx,&dy,&dtop,&avgstk,&avgdip,&rake,&elon,&elat);
+
+flen = nx*dx;
+fwid = ny_in*dy;
+
+if(nh < 0)
+   nh = (int)((flen-2.0*shypo_min_off)/shypo_step) + 1;
+if(ns < 0)
+   {
+   ns = slips_to_hypos*nh;
+   if(nx == 1 && ny_in == 1)
+      ns = 1;
+   }
+
+sh0 = 0.5*(flen - (nh-1)*shypo_step);
+if(dhypo < -1.0e+14)
+   dhypo = dhypo_frac*fwid;
+
+bigM = log(10.0);
+mom = exp(bigM*1.5*(mag + 10.7));
+mag_med = 3.98 + log(flen*fwid)/bigM;
+/* update 12/2005 */
+mag_med = 3.87 + 1.05*log(flen*fwid)/bigM;
+
+fprintf(stderr,"mag= %.2f median mag= %.2f nslip= %d nhypo= %d\n",mag,mag_med,ns,nh);
+fprintf(stderr,"nx= %d ny= %d dx= %10.4f dy= %10.4f\n",nx,ny_in,dx,dy);
+
+init_plane_srf(&srf,&gslip,&elon,&elat,nx,ny_in,&flen,&fwid,&dx,&dy,&avgstk,&avgdip,&dtop,&shypo,&dhypo);
+
+if(velfile[0] != '\0')
+   read_velmodel(velfile,&vmod);
+else
+   default_velmodel(&vmod);
+
+conv2vrup(&vmod,&rvmod,&avgdip,&dtop,&fwid,&rvfrac,&shal_vrup);
+
+if(kmodel != MAI_FLAG)
+   kmodel = SOMERVILLE_FLAG;
+
+/* generic fault length/width scaling */
+xl = flen;
+yl = fwid;
+
+if(xl > 2.0*yl)
+   xl = 2.0*yl;
+if(yl > 2.0*xl)
+   yl = 2.0*xl;
+
+/* mai scaling */
+xl = exp(bigM*(0.5*mag_med - 2.50));
+yl = exp(bigM*(0.3333*mag_med - 1.50));
+
+/* somerville scaling */
+xl = exp(bigM*(0.5*mag_med - 1.72));
+yl = exp(bigM*(0.5*mag_med - 1.93));
+
+/* modified somerville scaling */
+xl = exp(bigM*(0.5*mag_med - 2.00));
+yl = exp(bigM*(0.5*mag_med - 2.00));
+
+if(flip_at_surface < 0)
+   {
+   if(dtop <= 0.100001)
+      flip_at_surface = 1;
+   else
+      flip_at_surface = 0;
+   }
+
+ny = ny_in;
+if(flip_at_surface == 1)
+   {
+   ny = 2*ny_in;
+   if(stretch_kcorner)
+      {
+      xl = sqrt(2.0)*xl;
+      yl = sqrt(2.0)*yl;
+      }
+   }
+
+dkx = 1.0/(nx*dx);
+dky = 1.0/(ny*dy);
+
+/* rise time from somerville */
+if(stfparams.trise < 0.0)
+   stfparams.trise = 1.8e-09*exp(log(mom)/3.0);
+
+cslip = (struct complex *) check_malloc (nx*ny*sizeof(struct complex));
+
+if(specfile[0] != '\0')
+   {
+   aspec = (float *) check_malloc (nx*ny*sizeof(float));
+   for(j=0;j<nx*ny;j++)
+      aspec[j] = 0.0;
+   }
+
+for(js=0;js<ns;js++)    /* loop over slip realizations */
+   {
+   init_slip(cslip,nx,ny,&side_taper,&bot_taper);
+
+   fft2d(cslip,nx,ny,-1,&dx,&dy);
+   kfilt(cslip,nx,ny,&dkx,&dky,&xl,&yl,&seed,kmodel);
+   fft2d(cslip,nx,ny,1,&dkx,&dky);
+
+   taper_slip(cslip,nx,ny,&side_taper,&bot_taper);
+
+/*
+   truncate any negative slip values => should double check that spectra is
+   not changed too much
+*/
+
+   for(j=0;j<ny*nx;j++)
+      {
+      if(cslip[j].re < 0.0)
+         cslip[j].re = 0.0;
+      }
+
+   ny_str = 0;
+   ny_end = ny;
+   if(flip_at_surface == 1)
+      ny_str = ny_in;
+
+/* check moment and scale slip */
+
+   scale_slip(psrc,cslip,nx,ny_in,ny_str,&dx,&dy,&dtop,&avgdip,&mom,&vmod,&savg,&smax);
+
+   fprintf(stderr,"mom= %13.5e avgslip= %.0f maxslip= %.0f\n",mom,savg,smax);
+
+   if(slipfile[0] != '\0')
+      {
+      sprintf(str,"%s-s%.4d",slipfile,js);
+      write_field(str,psrc,"slip",nx,ny_in,&dx,&dy);
+      }
+
+   if(specfile[0] != '\0')
+      {
+      sprintf(str,"%s-s%.4d",specfile,js);
+      write_spec(str,aspec,cslip,nx,ny,&dx,&dy,&dkx,&dky,&xl,&yl,kmodel);
+      }
+
+   load_slip_srf(&srf,&stfparams,psrc);
+
+   for(ih=0;ih<nh;ih++)    /* loop over hypocenter realizations */
+      {
+      if(ih != 0 || shypo < -1.0e+14)
+         shypo = sh0 + ih*shypo_step - 0.5*flen;
+
+/* calculate rupture time */
+
+      if((smax-savg) != (float)(0.0))
+         sf = 1.0/(smax-savg);
+      else
+         tsfac = sf = 0.0;
+
+      tsmin = 1.0e+15;
+      for(j=0;j<ny_in;j++)
+         {
+         yy = (j + 0.5)*dy;
+         for(i=0;i<nx;i++)
+            {
+            xx = (i+0.5)*dx - 0.5*flen;
+
+            get_rupt(&rvmod,&htol,&dhypo,&yy,&shypo,&xx,&rayp,&rupt_rad,&rt);
+            psrc[i+j*nx].rupt = rt + sf*tsfac*(psrc[i + j*nx].slip - savg);
+
+	    if(psrc[i+j*nx].rupt < tsmin)
+	       tsmin = psrc[i+j*nx].rupt;
+            }
+         }
+
+      /* adjust to start at rt=0.0 */
+      for(j=0;j<nx*ny_in;j++)
+            psrc[j].rupt = psrc[j].rupt - tsmin;
+
+      if(ruptfile[0] != '\0')
+         {
+         sprintf(str,"%s-s%.4d-h%.4d",ruptfile,js,ih);
+         write_field(str,psrc,"rupt",nx,ny_in,&dx,&dy);
+         }
+
+      load_rupt_srf(&srf,psrc,&shypo,&dhypo);
+
+      if(strcmp(outfile,"stdout") == 0)
+         sprintf(str,"stdout");
+      else
+         sprintf(str,"%s-s%.4d-h%.4d",outfile,js,ih);
+
+      write_srf(&srf,str,outbin);
+
+      if(strcmp(outfile,"stdout") == 0)
+         sprintf(str,"stdout");
+      else
+         sprintf(str,"%s-s%.4d-h%.4d.gsf",outfile,js,ih);
+
+      if(gslip.np > 0 && write_gsf)
+         write2gsf(&gslip,psrc,infile,str);
+      }
+
+   free_srf_stf(&srf);
+   }
+
+if(specfile[0] != '\0')
+   {
+   sprintf(str,"%s-s_avg",specfile);
+   write_avgspec(str,aspec,ns,nx,ny,&dkx,&dky);
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslip.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,397 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+FILE *fpr, *fpw;
+struct complex *cslip;
+float *slip, *rupt;
+float flen, fwid, dx, dy, amp0, amp, lamp;
+float dkx, dky, kx, ky, xx, yy, zz;
+float cosA, sinA, cosD, sinD, dd, sn, se;
+int nx, ny;
+int i, j, k, ip, nt6, it;
+char infile[256], slipfile[256], specfile[256], ruptfile[256], str[512];
+char outfile[256];
+
+float bigM;
+float xl, yl;
+
+int flip_at_surface = 0;
+int ny_in, ny_str, ny_end, nyout;
+
+float pi = 3.14159265;
+double rperd = 0.017453293;
+
+float mag;
+float side_taper = 0.1;
+float bot_taper = 0.1;
+
+long seed = 0;
+
+int kmodel = 1;   /* default is somerville */
+
+float shypo, dhypo, strike, rake, rt;
+struct velmodel rvmod;
+double rayp, rupt_rad;
+
+float rvfrac = 0.8;
+float shal_vrup = 1.0;
+float htol = 0.1;
+
+float smax, savg, sf;
+float tsfac = -0.0;
+
+float dtop, dip, mom;
+struct velmodel vmod;
+char velfile[128];
+
+struct standrupformat srf;
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+float trise, dt, area;
+float *stf, *slon, *slat, *sdep, elon, elat;
+int ig, ntot;
+int nt = NTMAX;
+
+slipfile[0] = '\0';
+specfile[0] = '\0';
+ruptfile[0] = '\0';
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+
+sprintf(srf.version,"1.0");
+
+setpar(ac,av);
+
+mstpar("mag","f",&mag);
+mstpar("flen","f",&flen);
+mstpar("fwid","f",&fwid);
+mstpar("nx","d",&nx);
+mstpar("ny","d",&ny_in);
+
+mstpar("dtop","f",&dtop);
+mstpar("dip","f",&dip);
+mstpar("shypo","f",&shypo);
+mstpar("dhypo","f",&dhypo);
+mstpar("elon","f",&elon);
+mstpar("elat","f",&elat);
+mstpar("strike","f",&strike);
+mstpar("rake","f",&rake);
+mstpar("dt","f",&dt);
+getpar("nt","d",&nt);
+
+getpar("rvfrac","f",&rvfrac);
+getpar("shal_vrup","f",&shal_vrup);
+getpar("tsfac","f",&tsfac);
+
+getpar("slipfile","s",slipfile);
+getpar("specfile","s",specfile);
+getpar("ruptfile","s",ruptfile);
+
+getpar("infile","s",infile);
+getpar("outfile","s",outfile);
+
+mstpar("velfile","s",velfile);
+
+getpar("kmodel","d",&kmodel);
+getpar("flip_at_surface","d",&flip_at_surface);
+getpar("seed","d",&seed);
+getpar("side_taper","f",&side_taper);
+getpar("bot_taper","f",&bot_taper);
+
+endpar();
+
+dx = flen/nx;
+dy = fwid/ny_in;
+
+/*
+   For now, set parameters here, later will read in from 'infile'
+*/
+
+slon = (float *)check_malloc(nx*ny_in*sizeof(float));
+slat = (float *)check_malloc(nx*ny_in*sizeof(float));
+sdep = (float *)check_malloc(nx*ny_in*sizeof(float));
+
+cosA = cos(strike*rperd);
+sinA = sin(strike*rperd);
+cosD = cos(dip*rperd);
+sinD = sin(dip*rperd);
+for(j=0;j<ny_in;j++)
+   {
+   dd = (j + 0.5)*dy;
+   yy = dd*cosD;
+   zz = dtop + dd*sinD;
+   for(i=0;i<nx;i++)
+      {
+      ip = i + j*nx;
+      xx = (i+0.5)*dx - 0.5*flen;
+
+      se = xx*sinA + yy*cosA;
+      sn = xx*cosA - yy*sinA;
+      set_ll(&elon,&elat,&slon[ip],&slat[ip],&sn,&se);
+
+      sdep[ip] = zz;
+      }
+   }
+
+read_velmodel(velfile,&vmod);
+conv2vrup(&vmod,&rvmod,&dip,&dtop,&fwid,&rvfrac,&shal_vrup);
+
+if(kmodel != MAI_FLAG)
+   kmodel = SOMERVILLE_FLAG;
+
+ny = ny_in;
+if(flip_at_surface)
+   ny = 2*ny_in;
+
+bigM = log(10.0);
+
+/* generic fault length/width scaling */
+xl = flen;
+yl = fwid;
+
+if(xl > 2.0*yl)
+   xl = 2.0*yl;
+if(yl > 2.0*xl)
+   yl = 2.0*xl;
+
+/* somerville scaling */
+xl = exp(bigM*(0.5*mag - 1.72));
+yl = exp(bigM*(0.5*mag - 1.93));
+
+/* mai scaling */
+xl = exp(bigM*(0.5*mag - 2.50));
+yl = exp(bigM*(0.3333*mag - 1.50));
+
+/* modified somerville scaling */
+xl = exp(bigM*(0.5*mag - 2.00));
+yl = exp(bigM*(0.5*mag - 2.00));
+
+/*
+fprintf(stderr,"xl= %13.5f yl= %13.5f\n",xl,yl);
+*/
+
+dkx = 1.0/(nx*dx);
+dky = 1.0/(ny*dy);
+
+cslip = (struct complex *) check_malloc (nx*ny*sizeof(struct complex));
+init_slip(cslip,nx,ny,&side_taper,&bot_taper);
+
+fft2d(cslip,nx,ny,-1,&dx,&dy);
+kfilt(cslip,nx,ny,&dkx,&dky,&xl,&yl,&seed,kmodel);
+fft2d(cslip,nx,ny,1,&dkx,&dky);
+
+/*
+   truncate any negative slip values => should double check that spectra is
+   not changed too much
+*/
+
+for(j=0;j<ny*nx;j++)
+   {
+   if(cslip[j].re < 0.0)
+      cslip[j].re = 0.0;
+   }
+
+ny_str = 0;
+ny_end = ny;
+if(flip_at_surface)
+   ny_str = ny/2;
+
+nyout = ny_end - ny_str;
+
+slip = (float *) check_malloc (nx*nyout*sizeof(float));
+rupt = (float *) check_malloc (nx*nyout*sizeof(float));
+
+/* check moment and scale slip */
+
+mom = exp(bigM*1.5*(mag + 10.7));
+scale_slip(slip,cslip,nx,nyout,ny_str,&dx,&dy,&dtop,&dip,&mom,&vmod,&savg,&smax);
+
+/* calculate rupture time */
+
+if((smax-savg) != (float)(0.0))
+   sf = 1.0/(smax-savg);
+else
+   tsfac = sf = 0.0;
+
+for(j=0;j<nyout;j++)
+   {
+   yy = (j + 0.5)*dy;
+   for(i=0;i<nx;i++)
+      {
+      xx = (i+0.5)*dx - 0.5*flen;
+
+      get_rupt(&rvmod,&htol,&dhypo,&yy,&shypo,&xx,&rayp,&rupt_rad,&rt);
+      rupt[i+j*nx] = rt + sf*tsfac*(slip[i + j*nx] - savg);
+      }
+   }
+
+fprintf(stderr,"mag= %.2f mom= %13.5e avgslip= %.0f maxslip= %.0f\n",mag,mom,savg,smax);
+
+if(slipfile[0] != '\0')
+   write_field(slipfile,slip,nx,nyout,&dx,&dy);
+
+if(ruptfile[0] != '\0')
+   write_field(ruptfile,rupt,nx,nyout,&dx,&dy);
+
+if(specfile[0] != '\0')
+   write_spec(specfile,cslip,nx,ny,&dx,&dy,&dkx,&dky,&xl,&yl,kmodel);
+
+/*
+   load rupture model into Standard Rupture Format and write output
+*/
+
+/* rise time from somerville */
+trise = 1.8e-09*exp(log(mom)/3.0);
+
+sprintf(srf.type,"PLANE");
+
+prect_ptr = &srf.srf_prect;
+prect_ptr->nseg = 1;
+prseg_ptr = prect_ptr->prectseg;
+prseg_ptr = (struct srf_prectsegments *)check_malloc(prect_ptr->nseg*sizeof(struct srf_prectsegments));
+
+apnts_ptr = &srf.srf_apnts;
+apnts_ptr->np = 0;
+apval_ptr = apnts_ptr->apntvals;
+apval_ptr = (struct srf_apointvalues *)check_malloc(sizeof(struct srf_apointvalues));
+
+prseg_ptr[0].elon = elon;
+prseg_ptr[0].elat = elat;
+prseg_ptr[0].nstk = nx;
+prseg_ptr[0].ndip = nyout;
+prseg_ptr[0].flen = flen;
+prseg_ptr[0].fwid = fwid;
+prseg_ptr[0].dlen = dx;
+prseg_ptr[0].dwid = dy;
+prseg_ptr[0].stk = strike;
+prseg_ptr[0].dip = dip;
+prseg_ptr[0].dtop = dtop;
+prseg_ptr[0].shyp = shypo;
+prseg_ptr[0].dhyp = dhypo;
+
+ntot = (prseg_ptr[0].nstk)*(prseg_ptr[0].ndip);
+area = prseg_ptr[0].dlen*prseg_ptr[0].dwid*1.0e+10;
+
+apval_ptr = (struct srf_apointvalues *)check_realloc(apval_ptr,(apnts_ptr->np+ntot)*sizeof(struct srf_apointvalues));
+
+for(j=0;j<nyout;j++)
+   {
+   for(i=0;i<nx;i++)
+      {
+      ip = i + j*nx;
+
+      apval_ptr[ip].stf1 = (float *)check_malloc(nt*sizeof(float));
+      stf = apval_ptr[ip].stf1;
+
+      apval_ptr[ip].dt = dt;
+      if(slip[ip] > MINSLIP)
+         apval_ptr[ip].nt1 = gen_stf(&trise,stf,nt,&dt,&sdep[ip]);
+      else
+         apval_ptr[ip].nt1 = 0;
+
+      if(apval_ptr[ip].nt1)
+         apval_ptr[ip].stf1 = (float *)check_realloc(apval_ptr[ip].stf1,(apval_ptr[ip].nt1)*sizeof(float));
+      else
+         free(apval_ptr[ip].stf1);
+
+      apval_ptr[ip].lon = slon[ip];
+      apval_ptr[ip].lat = slat[ip];
+      apval_ptr[ip].dep = sdep[ip];
+      apval_ptr[ip].stk = prseg_ptr[0].stk;
+      apval_ptr[ip].dip = prseg_ptr[0].dip;
+      apval_ptr[ip].area = area;
+      apval_ptr[ip].tinit = rupt[ip];
+      apval_ptr[ip].rake = rake;
+      apval_ptr[ip].slip1 = slip[ip];
+
+      apval_ptr[ip].slip2 = 0.0;
+      apval_ptr[ip].nt2 = 0;
+      apval_ptr[ip].slip3 = 0.0;
+      apval_ptr[ip].nt3 = 0;
+      }
+   }
+apnts_ptr->np = apnts_ptr->np + ntot;
+
+if(strcmp(outfile,"stdout") == 0)
+   fpw = stdout;
+else
+   fpw = fopfile(outfile,"w");
+
+fprintf(fpw,"%s\n",srf.version);
+
+fprintf(fpw,"%s %d\n",srf.type,prect_ptr->nseg);
+for(ig=0;ig<prect_ptr->nseg;ig++)
+   {
+   fprintf(fpw,"%10.4f %9.4f %5d %5d %8.2f %8.2f\n",prseg_ptr[ig].elon,
+                                                     prseg_ptr[ig].elat,
+                                                     prseg_ptr[ig].nstk,
+                                                     prseg_ptr[ig].ndip,
+                                                     prseg_ptr[ig].flen,
+                                                     prseg_ptr[ig].fwid);
+   fprintf(fpw,"%4.0f %4.0f %8.2f %8.2f %8.2f\n",prseg_ptr[ig].stk,
+                                                 prseg_ptr[ig].dip,
+                                                 prseg_ptr[ig].dtop,
+                                                 prseg_ptr[ig].shyp,
+                                                 prseg_ptr[ig].dhyp);
+   }
+
+fprintf(fpw,"POINTS %d\n",apnts_ptr->np);
+for(i=0;i<apnts_ptr->np;i++)
+   {
+   fprintf(fpw,"%10.4f %9.4f %9.4f %4.0f %4.0f %12.5e %10.4f %12.5e\n",
+                                              apval_ptr[i].lon,
+                                              apval_ptr[i].lat,
+                                              apval_ptr[i].dep,
+                                              apval_ptr[i].stk,
+                                              apval_ptr[i].dip,
+                                              apval_ptr[i].area,
+                                              apval_ptr[i].tinit,
+                                              apval_ptr[i].dt);
+   fprintf(fpw,"%4.0f %8.2f %6d %8.2f %6d %8.2f %6d\n",
+                                              apval_ptr[i].rake,
+                                              apval_ptr[i].slip1,
+                                              apval_ptr[i].nt1,
+                                              apval_ptr[i].slip2,
+                                              apval_ptr[i].nt2,
+                                              apval_ptr[i].slip3,
+                                              apval_ptr[i].nt3);
+
+   stf = apval_ptr[i].stf1;
+   nt6 = (apval_ptr[i].nt1)/6;
+   for(k=0;k<nt6;k++)
+      {
+      for(j=0;j<6;j++)
+         {
+         it = 6*k + j;
+         fprintf(fpw,"%13.5e",stf[it]);
+         }
+      fprintf(fpw,"\n");
+      }
+
+   if(6*nt6 != (apval_ptr[i].nt1))
+      {
+      for(j=6*nt6;j<(apval_ptr[i].nt1);j++)
+         fprintf(fpw,"%13.5e",stf[j]);
+
+      fprintf(fpw,"\n");
+      }
+
+   stf = apval_ptr[i].stf2;
+   for(it=0;it<apval_ptr[i].nt2;it++)
+      fprintf(fpw,"%13.5e\n",stf[it]);
+
+   stf = apval_ptr[i].stf3;
+   for(it=0;it<apval_ptr[i].nt3;it++)
+      fprintf(fpw,"%13.5e\n",stf[it]);
+   }
+
+fclose(fpw);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslipALL.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslipALL.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/genslipALL.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,906 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+FILE *fpr, *fpw;
+struct complex *cslip;
+float *slip, *rupt;
+float flen, fwid, dx, dy, amp0, amp, lamp;
+float dkx, dky, kx, ky, xx, yy, zz;
+int nx, ny;
+int i, j, k, l, ip;
+char infile[256], slipfile[256], specfile[256], ruptfile[256], str[512];
+char outfile[256];
+
+float bigM;
+float xl, yl;
+
+int flip_at_surface = 0;
+int ny_in, ny_str, ny_end, nyout;
+
+float pi = 3.14159265;
+
+float mag;
+float side_taper = 0.1;
+float bot_taper = 0.1;
+
+long seed = 0;
+
+int kmodel = 1;   /* default is somerville */
+
+float shypo, dhypo, rake, rt;
+struct velmodel rvmod;
+double rayp, rupt_rad;
+
+float rvfrac = 0.8;
+float shal_vrup = 1.0;
+float htol = 0.1;
+
+float smax, savg, sf;
+float tsfac = -0.0;
+
+float dtop, dip, mom;
+struct velmodel vmod;
+char velfile[128];
+
+slipfile[0] = '\0';
+specfile[0] = '\0';
+ruptfile[0] = '\0';
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+
+setpar(ac,av);
+
+mstpar("mag","f",&mag);
+mstpar("flen","f",&flen);
+mstpar("fwid","f",&fwid);
+mstpar("nx","d",&nx);
+mstpar("ny","d",&ny_in);
+
+mstpar("dtop","f",&dtop);
+mstpar("dip","f",&dip);
+mstpar("shypo","f",&shypo);
+mstpar("dhypo","f",&dhypo);
+mstpar("rake","f",&rake);
+
+getpar("rvfrac","f",&rvfrac);
+getpar("shal_vrup","f",&shal_vrup);
+getpar("tsfac","f",&tsfac);
+
+getpar("slipfile","s",slipfile);
+getpar("specfile","s",specfile);
+getpar("ruptfile","s",ruptfile);
+
+getpar("infile","s",infile);
+getpar("outfile","s",outfile);
+
+mstpar("velfile","s",velfile);
+
+getpar("kmodel","d",&kmodel);
+getpar("flip_at_surface","d",&flip_at_surface);
+getpar("seed","d",&seed);
+getpar("side_taper","f",&side_taper);
+getpar("bot_taper","f",&bot_taper);
+
+endpar();
+
+fpr = fopfile(velfile,"r");
+
+fgets(str,512,fpr);
+sscanf(str,"%d",&vmod.nlay);
+
+vmod.vp = (float *)check_malloc(vmod.nlay*sizeof(float));
+vmod.vs = (double *)check_malloc(vmod.nlay*sizeof(double));
+vmod.den = (float *)check_malloc(vmod.nlay*sizeof(float));
+vmod.th = (float *)check_malloc(vmod.nlay*sizeof(float));
+vmod.dep = (float *)check_malloc(vmod.nlay*sizeof(float));
+vmod.mu = (float *)check_malloc(vmod.nlay*sizeof(float));
+vmod.invb2 = (double *)check_malloc(vmod.nlay*sizeof(double));
+
+for(i=0;i<vmod.nlay;i++)
+   {
+   fgets(str,512,fpr);
+   sscanf(str,"%f %f %lf %f",&vmod.th[i],&vmod.vp[i],&vmod.vs[i],&vmod.den[i]);
+
+   if(i==0)
+      vmod.dep[i] = vmod.th[i];
+   else
+      vmod.dep[i] = vmod.dep[i-1] + vmod.th[i];
+
+   vmod.mu[i] = vmod.vs[i]*vmod.vs[i]*vmod.den[i]*1.0e+10;  /* in CMS units */
+   }
+fclose(fpr);
+
+rvmod.nlay = vmod.nlay;
+rvmod.vs = (double *)check_malloc(rvmod.nlay*sizeof(double));
+rvmod.th = (float *)check_malloc(rvmod.nlay*sizeof(float));
+rvmod.invb2 = (double *)check_malloc(rvmod.nlay*sizeof(double));
+
+conv2vrup(&vmod,&rvmod,&dip,&dtop,&fwid,&rvfrac,&shal_vrup);
+
+if(kmodel != MAI_FLAG)
+   kmodel = SOMERVILLE_FLAG;
+
+ny = ny_in;
+if(flip_at_surface)
+   ny = 2*ny_in;
+
+dx = flen/nx;
+dy = fwid/ny_in;
+
+bigM = log(10.0);
+
+/* mai scaling */
+xl = exp(bigM*(0.5*mag - 2.50));
+yl = exp(bigM*(0.3333*mag - 1.50));
+
+/* generic fault length/width scaling */
+xl = flen;
+yl = fwid;
+
+if(xl > 2.0*yl)
+   xl = 2.0*yl;
+if(yl > 2.0*xl)
+   yl = 2.0*xl;
+
+/* somerville scaling */
+xl = exp(bigM*(0.5*mag - 1.72));
+yl = exp(bigM*(0.5*mag - 1.93));
+
+/* modified somerville scaling */
+xl = exp(bigM*(0.5*mag - 2.00));
+yl = exp(bigM*(0.5*mag - 2.00));
+
+/*
+fprintf(stderr,"xl= %13.5f yl= %13.5f\n",xl,yl);
+*/
+
+dkx = 1.0/(nx*dx);
+dky = 1.0/(ny*dy);
+
+cslip = (struct complex *) check_malloc (nx*ny*sizeof(struct complex));
+init_slip(cslip,nx,ny,&side_taper,&bot_taper);
+
+fft2d(cslip,nx,ny,-1,&dx,&dy);
+kfilt(cslip,nx,ny,&dkx,&dky,&xl,&yl,&seed,kmodel);
+fft2d(cslip,nx,ny,1,&dkx,&dky);
+
+/*
+   truncate any negative slip values => should double check that spectra is
+   not changed too much
+*/
+
+for(j=0;j<ny*nx;j++)
+   {
+   if(cslip[j].re < 0.0)
+      cslip[j].re = 1.0e-04;
+   }
+
+ny_str = 0;
+ny_end = ny;
+if(flip_at_surface)
+   ny_str = ny/2;
+
+nyout = ny_end - ny_str;
+
+slip = (float *) check_malloc (nx*nyout*sizeof(float));
+rupt = (float *) check_malloc (nx*nyout*sizeof(float));
+
+/* check moment and scale slip */
+
+mom = exp(bigM*1.5*(mag + 10.7));
+scale_slip(slip,cslip,nx,nyout,ny_str,&dx,&dy,&dtop,&dip,&mom,&vmod,&savg,&smax);
+
+/* calculate rupture time */
+
+if((smax-savg) != (float)(0.0))
+   sf = 1.0/(smax-savg);
+else
+   tsfac = sf = 0.0;
+
+for(j=0;j<nyout;j++)
+   {
+   yy = (j + 0.5)*dy;
+   for(i=0;i<nx;i++)
+      {
+      xx = (i+0.5)*dx - 0.5*flen;
+
+      get_rupt(&rvmod,&htol,&dhypo,&yy,&shypo,&xx,&rayp,&rupt_rad,&rt);
+      rupt[i+j*nx] = rt + sf*tsfac*(slip[i + j*nx] - savg);
+      }
+   }
+
+fprintf(stderr,"mag= %.2f mom= %13.5e avgslip= %.0f maxslip= %.0f\n",mag,mom,savg,smax);
+
+/*
+write_srf(outfile,slip,nx,nyout,&dx,&dy);
+*/
+
+if(slipfile[0] != '\0')
+   write_field(slipfile,slip,nx,nyout,&dx,&dy);
+
+if(ruptfile[0] != '\0')
+   write_field(ruptfile,rupt,nx,nyout,&dx,&dy);
+
+if(specfile[0] != '\0')
+   write_spec(specfile,cslip,nx,ny,&dx,&dy,&dkx,&dky,&xl,&yl,kmodel);
+}
+
+void kfilt(struct complex *s0,int nx0,int ny0,float *dkx,float *dky,float *xl,float *yl,long *seed,int kflag)
+{
+int i, j, ip;
+float kx, ky, fac, amp, amp0, phs, xl2, yl2;
+
+float pi = 3.14159265;
+float hcoef = 1.8;  /* H=0.8, hcoef = H + 1 */
+
+amp0 = sqrt(s0[0].re*s0[0].re + s0[0].im*s0[0].im);
+if(*xl > 1.0e+14 || *yl > 1.0e+14)
+   amp0 = 0.0;
+
+xl2 = (*xl)*(*xl);
+yl2 = (*yl)*(*yl);
+
+for(j=0;j<ny0;j++)
+   {
+   if(j <= ny0/2)
+      ky = j*(*dky);
+   else
+      ky = (j - ny0)*(*dky);
+
+   for(i=0;i<nx0;i++)
+      {
+      if(i <= nx0/2)
+         kx = i*(*dkx);
+      else
+         kx = (i - nx0)*(*dkx);
+
+      ip = i + j*nx0;
+
+      amp = kx*kx*xl2 + ky*ky*yl2;
+
+      /* default is somerville scaling */
+      fac = amp0/sqrt(1.0 + amp*amp);
+
+      if(kflag == MAI_FLAG) /* mai scaling */
+         {
+         fac = exp((hcoef)*log(1.0+amp));
+         fac = amp0/sqrt(fac);
+	 }
+
+      if(kflag == SOMERVILLE_FLAG)      /* somerville scaling */
+         fac = amp0/sqrt(1.0 + amp*amp);
+
+      phs = pi*sfrand(seed);
+
+/* 
+   Do not alter phase of lowest (k=0) and 2nd lowest (k=dk) wavenumbers
+   so average slip and edge taper are not significantly modified
+*/
+      if(i > 1 && j > 1)
+         {
+         s0[ip].re = fac*cos(phs);
+         s0[ip].im = fac*sin(phs);
+	 }
+      }
+   }
+}
+
+void fft2d(struct complex *xc,int n1,int n2,int isgn,float *d1,float *d2)
+{
+int i, j, ip;
+float *space;
+struct complex *xtc;
+float normf;
+
+normf = (*d1)*(*d2);
+
+space = (float *) check_malloc (2*(n1+n2)*sizeof(float));
+
+for(j=0;j<n2;j++)
+   fourg_(xc+j*n1,&n1,&isgn,space);
+
+xtc = (struct complex *) check_malloc (n2*sizeof(struct complex));
+
+for(i=0;i<n1;i++)
+   {
+   for(j=0;j<n2;j++)
+      {
+      ip = i + j*n1;
+
+      xtc[j].re = xc[ip].re;
+      xtc[j].im = xc[ip].im;
+      }
+
+   fourg_(xtc,&n2,&isgn,space);
+
+   for(j=0;j<n2;j++)
+      {
+      ip = i + j*n1;
+
+      xc[ip].re = normf*xtc[j].re;
+      xc[ip].im = normf*xtc[j].im;
+      }
+   }
+
+free(space);
+free(xtc);
+}
+
+FILE *fopfile(char *name,char *mode)
+{
+FILE *fp;
+
+if((fp = fopen(name,mode)) == NULL)
+   {
+   fprintf(stderr,"CAN'T FOPEN FILE = %s, MODE = %s\n", name, mode);
+   exit(-1);
+   }
+return(fp);
+}
+
+void *check_malloc(size_t len)
+{
+void *ptr;
+
+ptr = (void *) malloc (len);
+
+if(ptr == NULL)
+   {
+   fprintf(stderr,"*****  memory allocation error\n");
+   exit(-1);
+   }
+
+return(ptr);
+}
+
+static  long    frandx = 1;
+
+/* frand() returns a uniform distribution of random numbers
+ * in the range -1.0 -> 1.0.
+ */
+double frand(void)
+{
+frandx = (frandx * 1103515245 + 12345) & 0x7fffffff;
+return((double)(frandx)/1073741824.0 - 1.0);
+}
+
+/* sfrand() returns a uniform distribution of random numbers
+ * in the range -1.0 -> 1.0.
+ */
+double sfrand(long *seed)
+{
+*seed = ((*seed) * 1103515245 + 12345) & 0x7fffffff;
+return((double)(*seed)/1073741824.0 - 1.0);
+}
+
+void init_slip(struct complex *sc,int nx,int ny,float *st,float *bt)
+{
+float xdamp, ydamp;
+int ix, iy, xb, yb;
+
+for(ix=0;ix<nx*ny;ix++)
+   {
+   sc[ix].re = 0.5;
+   sc[ix].im = 0.0;
+   }
+
+xb = (int)((*st)*nx + 0.5);
+if(xb < 0)
+   xb = 0;
+
+yb = (int)((*bt)*ny + 0.5);
+if(yb < 0)
+   yb = 0;
+
+for(iy=0;iy<yb;iy++)
+   {
+   ydamp = (float)(iy+1)/(float)(yb);
+   for(ix=0;ix<nx;ix++)
+      {
+      xdamp = 1.0;
+      if(ix < xb)
+         xdamp = (float)(ix+1)/(float)(xb);
+      if(ix > nx-xb)
+         xdamp = (float)(nx-ix)/(float)(xb);
+
+      sc[ix+iy*nx].re = xdamp*ydamp*sc[ix+iy*nx].re;
+      sc[ix+(ny-1-iy)*nx].re = xdamp*ydamp*sc[ix+(ny-1-iy)*nx].re;
+      }
+   }
+
+for(iy=yb;iy<ny-yb;iy++)
+   {
+   for(ix=0;ix<xb;ix++)
+      {
+      xdamp = (float)(ix+1)/(float)(xb);
+
+      sc[ix+iy*nx].re = xdamp*sc[ix+iy*nx].re;
+      sc[(nx-1-ix)+iy*nx].re = xdamp*sc[(nx-1-ix)+iy*nx].re;
+      }
+   }
+}
+
+void write_field(char *file,float *aa,int nx,int ny,float *dx,float *dy)
+{
+FILE *fpw, *fopfile();
+float xx, yy;
+int i, j;
+
+fpw = fopfile(file,"w");
+for(j=0;j<ny;j++)
+   {
+   yy = (j + 0.5)*(*dy);
+   for(i=0;i<nx;i++)
+      {
+      xx = (i+0.5)*(*dx);
+      fprintf(fpw,"%12.5e %12.5e %12.5e\n",xx,yy,aa[i+j*nx]);
+      }
+   }
+fclose(fpw);
+}
+
+void write_spec(char *file,struct complex *slip,int nx,int ny,float *dx,float *dy,float *dkx,float *dky,float *xl,float *yl,int kflag)
+{
+FILE *fpw;
+float kx, ky, amp, amp0, lamp;
+float xl2, yl2, fac;
+int i, j, ip;
+
+float hcoef = 1.8;  /* H=0.8, hcoef = H + 1 */
+
+xl2 = (*xl)*(*xl);
+yl2 = (*yl)*(*yl);
+
+fft2d(slip,nx,ny,-1,dx,dy);
+
+fpw = fopfile(file,"w");
+
+/* this will normalize max spectrum to one */
+amp0 = sqrt(slip[0].re*slip[0].re + slip[0].im*slip[0].im);
+
+for(j=0;j<=ny/2;j++)
+   {
+   if(j<=ny/2)
+      ky = j*(*dky);
+   else
+      ky = (j-ny)*(*dky);
+
+   for(i=0;i<=nx/2;i++)
+      {
+      if(i<=nx/2)
+         kx = i*(*dkx);
+      else
+         kx = (i-nx)*(*dkx);
+
+      ip = i + j*nx;
+
+      amp = kx*kx*xl2 + ky*ky*yl2;
+
+      /* default is somerville scaling */
+      fac = 1.0/sqrt(1.0 + amp*amp);
+
+      if(kflag == MAI_FLAG) /* mai scaling */
+         {
+         fac = exp((hcoef)*log(1.0+amp));
+         fac = 1.0/sqrt(fac);
+	 }
+
+      if(kflag == SOMERVILLE_FLAG)      /* somerville scaling */
+         fac = 1.0/sqrt(1.0 + amp*amp);
+
+      amp = sqrt(slip[ip].re*slip[ip].re + slip[ip].im*slip[ip].im);
+      amp = amp/amp0;
+
+      lamp = -1.e+20;
+      if(amp > 0.0)
+	 lamp = log10(amp/fac);
+
+      fprintf(fpw,"%13.5e %13.5e %12.5e %12.5e\n",kx,ky,lamp,amp);
+      }
+   }
+fclose(fpw);
+
+fft2d(slip,nx,ny,1,dkx,dky);
+}
+
+void conv2vrup(struct velmodel *vm,struct velmodel *rvm,float *dip,float *ztop,float *wid,float *rvf,float *shal_vr)
+{
+int i, j, k;
+float invsinA, dep, zbot;
+char string[256];
+
+float rperd = 0.017453293;
+float dmin = 4.0;
+float dmax = 6.0;
+float rvfac;
+
+i = 0;
+dep = vm->th[0];
+while(dep < (*ztop))
+   {
+   i++;
+   dep = dep + vm->th[i];
+   }
+
+zbot = *ztop + (*wid)*sin((*dip)*rperd);
+invsinA = 1.0/sin((*dip)*rperd);
+
+if(dep >= dmax)
+   rvfac = (*rvf);
+else if(dep < dmax && dep > dmin)
+   rvfac = (*rvf)*(1.0 - (1.0 - (*shal_vr))*(dmax-dep)/(dmax-dmin));
+else
+   rvfac = (*rvf)*(*shal_vr);
+
+rvm->th[0] = invsinA*(dep - (*ztop));
+rvm->vs[0] = rvfac*vm->vs[i];
+
+j = i;
+k = 0;
+while(dep < zbot)
+   {
+   j++; k++;
+   dep = dep + vm->th[j];
+
+   if(dep >= dmax)
+      rvfac = (*rvf);
+   else if(dep < dmax && dep > dmin)
+      rvfac = (*rvf)*(1.0 - (1.0 - (*shal_vr))*(dmax-dep)/(dmax-dmin));
+   else
+      rvfac = (*rvf)*(*shal_vr);
+
+   rvm->th[k] = invsinA*vm->th[j];
+   rvm->vs[k] = rvfac*vm->vs[j];
+   }
+
+rvm->nlay = k + 1;
+
+for(i=0;i<rvm->nlay;i++)
+   rvm->invb2[i] = 1.0/(rvm->vs[i]*rvm->vs[i]);
+}
+
+get_rupt(vm,h,srcd,recd,srcr,recr,p,rad,tt)
+struct velmodel *vm;
+float *h, *srcr, *recr, *recd, *tt, *srcd;
+double *p, *rad;
+{
+double sth, rth, rng;
+float sdep, rdep;
+float tol;
+float tup, thead;
+int k, slay, rlay, linc;
+
+float tenth = 0.1;
+double eps = 1.0e-12;
+
+tol = tenth*(*h);
+
+rng = *srcr - *recr;
+if(rng < 0.0)
+   rng = -rng;
+
+k = 0;
+sdep = vm->th[0];
+while((*srcd) > sdep)
+   {
+   k++;
+   sdep = sdep + vm->th[k];
+   }
+slay = k;
+
+k = 0;
+rdep = vm->th[0];
+while((*recd) > rdep)
+   {
+   k++;
+   rdep = rdep + vm->th[k];
+   }
+rlay = k;
+
+sth = sdep - *srcd;
+rth = rdep - *recd;
+get_headtime(vm,slay,&sth,rlay,&rth,&rng,&thead);
+
+if(slay != rlay)
+   {
+   if(sdep > rdep)
+      {
+      sth = vm->th[slay] - (sdep - *srcd);
+      rth = rdep - *recd;
+      linc = -1;
+      }
+   else
+      {
+      sth = sdep - *srcd;
+      rth = vm->th[rlay] - (rdep - *recd);
+      linc = 1;
+      }
+
+/*
+   bisection method
+*/
+    bisect_p(vm,slay,&sth,rlay,&rth,p,&eps,&tol,&rng,linc);
+
+         /* get path length and travel time for correct ray parameter */
+
+   get_radtime(vm,slay,&sth,rlay,&rth,p,rad,&tup,linc);
+   }
+else
+   {
+   *rad = sqrt(rng*rng + ((*srcd)-(*recd))*((*srcd)-(*recd)));
+   tup = (*rad)/vm->vs[slay];
+   }
+
+*tt = thead;
+if(tup < thead)
+   *tt = tup;
+/*
+else
+   fprintf(stderr,"*** thead selected\n");
+
+fprintf(stderr,"*** thd= %f tup= %f\n",thead,tup);
+*/
+}
+
+bisect_p(vm,slay,sth,rlay,rth,p,eps,tol,rng,linc)
+struct velmodel *vm;
+double *sth, *rth, *p, *rng, *eps;
+float *tol;
+int linc, slay, rlay;
+{
+double tp0, pp, pm, p0, r0, delr;
+int i, ic;
+
+int nc = 100;
+
+p0 = 1.0/vm->vs[slay];
+for(i=slay+linc;i!=rlay;i=i+linc)
+   {
+   tp0 = 1.0/vm->vs[i];
+   if(tp0 < p0)
+      p0 = tp0;
+   }
+tp0 = 1.0/vm->vs[rlay];
+if(tp0 < p0)
+   p0 = tp0;
+
+*p = *eps;
+
+get_range(vm,slay,sth,rlay,rth,p,&r0,linc);
+
+if(r0 < *rng)  /* if not, then p=0 (vertical ray) */
+   {
+                   /* bracket range with ray parameter extremes */
+
+   ic = 0;
+   while(r0 < *rng && ic < nc)
+      {
+      ic++;
+      *p = p0*(1.0 - (*eps)/(double)(ic*ic));
+      get_range(vm,slay,sth,rlay,rth,p,&r0,linc);
+      }
+
+   pp = *p;
+   pm = *eps;
+
+   delr = r0 - *rng;
+
+/*
+   use bisection to converge to correct ray parameter
+*/
+
+   ic = 0;
+   while(delr > *tol)
+      {
+      *p = 0.5*(pp + pm);
+
+      if(*p == pp || *p == pm) /* beyond double precision accuracy */
+         break;
+
+      get_range(vm,slay,sth,rlay,rth,p,&r0,linc);
+      if(r0 >= *rng)
+         {
+         delr = r0 - *rng;
+         pp = *p;
+         }
+      else
+         {
+         delr = *rng - r0;
+         pm = *p;
+         }
+
+      ic++;
+      if(ic > nc)
+         break;
+      }
+   }
+else
+   *p = 0.0;
+}
+
+get_range(vm,slay,sth,rlay,rth,p,r0,linc)
+struct velmodel *vm;
+double *sth, *rth, *p, *r0;
+int linc, slay, rlay;
+{
+int i;
+double denom, arg;
+double invp2;
+
+invp2 = 1.0/((*p)*(*p));
+
+denom = sqrt(invp2*vm->invb2[slay] - 1.0);
+*r0 = (*sth)/denom;
+
+for(i=slay+linc;i!=rlay;i=i+linc)
+   {
+   denom = sqrt(invp2*vm->invb2[i] - 1.0);
+   *r0 = *r0 + vm->th[i]/denom;
+   }
+
+denom = sqrt(invp2*vm->invb2[rlay] - 1.0);
+*r0 = *r0 + (*rth)/denom;
+}
+
+get_radtime(vm,slay,sth,rlay,rth,p,r0,tt,linc)
+struct velmodel *vm;
+double *sth, *rth, *p, *r0;
+float *tt;
+int linc, slay, rlay;
+{
+int i;
+double r1, rad, arg;
+double denom, invp2;
+
+if(*p > 0.0)
+   {
+   arg = 1.0 - (*p)*(*p)*vm->vs[slay]*vm->vs[slay];
+   denom = sqrt(arg);
+
+   *r0 = (*sth)/denom;
+   *tt = *r0/vm->vs[slay];
+
+   for(i=slay+linc;i!=rlay;i=i+linc)
+      {
+      arg = 1.0 - (*p)*(*p)*vm->vs[i]*vm->vs[i];
+      denom = sqrt(arg);
+
+      rad = vm->th[i]/denom;
+      *r0 = *r0 + rad;
+      *tt = *tt + rad/vm->vs[i];
+      }
+
+   arg = 1.0 - (*p)*(*p)*vm->vs[rlay]*vm->vs[rlay];
+   denom = sqrt(arg);
+
+   rad = (*rth)/denom;
+   *r0 = *r0 + rad;
+   *tt = *tt + rad/vm->vs[rlay];
+   }
+else
+   {
+   *r0 = *sth;
+   *tt = *r0/vm->vs[slay];
+
+   for(i=slay+linc;i!=rlay;i=i+linc)
+      {
+      *r0 = *r0 + vm->th[i];
+      *tt = *tt + vm->th[i]/vm->vs[i];
+      }
+
+   *r0 = *r0 + *rth;
+   *tt = *tt + (*rth)/vm->vs[rlay];
+   }
+}
+
+get_headtime(mod,slay,sth,rlay,rth,rad,tt)
+struct velmodel *mod;
+double *sth, *rth, *rad;
+float *tt;
+int slay, rlay;
+{
+int vflag, j, jj, jst, jnd;
+double inv2, rc, tinc, arg;
+
+jst = rlay;
+if(slay > rlay)
+   jst = slay;
+
+*tt = 1.0e+5;
+for(jnd=jst+1;jnd<mod->nlay;jnd++)
+   {
+   jj = rlay;
+   if(slay < rlay)
+      jj = slay;
+
+   vflag = 1;
+   for(j=jj;j<jnd;j++)
+      {
+      if(mod->vs[j] > mod->vs[jnd])
+	 vflag = -1;
+      }
+
+   if(vflag == 1)
+      {
+      tinc = (*rad)/mod->vs[jnd];
+      inv2 = 1.0/(mod->vs[jnd]*mod->vs[jnd]);
+
+      arg = 1.0/(mod->vs[slay]*mod->vs[slay]) - inv2;
+      arg = sqrt(arg);
+      tinc = tinc + (*sth)*arg;
+      rc = (*sth)/(arg*mod->vs[jnd]);
+
+      for(j=slay+1;j<jnd;j++)
+         {
+         arg = 1.0/(mod->vs[j]*mod->vs[j]) - inv2;
+         arg = sqrt(arg);
+         tinc = tinc + mod->th[j]*arg;
+         rc = rc + mod->th[j]/(arg*mod->vs[jnd]);
+         }
+
+      for(j=rlay+1;j<jnd;j++)
+         {
+         arg = 1.0/(mod->vs[j]*mod->vs[j]) - inv2;
+         arg = sqrt(arg);
+         tinc = tinc + mod->th[j]*arg;
+         rc = rc + mod->th[j]/(arg*mod->vs[jnd]);
+         }
+
+      arg = 1.0/(mod->vs[rlay]*mod->vs[rlay]) - inv2;
+      arg = sqrt(arg);
+      tinc = tinc + (*rth)*arg;
+      rc = rc + (*rth)/(arg*mod->vs[jnd]);
+
+      if(tinc < *tt && rc < (*rad))
+         *tt = tinc;
+      }
+   }
+}
+
+void scale_slip(float *s,struct complex *cs,int nx,int ny,int nys,float *dx,float *dy,float *dtop,float *dip,float *mom,struct velmodel *vm,float *savg,float *smax)
+{
+float sum, fac, sinD, area;
+float zz;
+int i, j, k;
+
+float rperd = 0.017453293;
+
+sinD = sin((*dip)*rperd);
+area = (*dx)*(*dy)*1.0e+10;    /* in CMS units */
+
+sum = 0.0;
+for(j=0;j<ny;j++)
+   {
+   zz = (*dtop) + sinD*(j + 0.5)*(*dy);
+
+   k = 0;
+   while(zz > vm->dep[k] && k < (vm->nlay)-1)
+      k++;
+
+   fac = area*vm->mu[k];
+   for(i=0;i<nx;i++)
+      sum = sum + fac*cs[i + (j+nys)*nx].re;
+   }
+
+fac = (*mom)/sum;
+
+*smax = 0.0;
+*savg = 0.0;
+for(j=0;j<ny;j++)
+   {
+   for(i=0;i<nx;i++)
+      {
+      s[i + j*nx] = fac*cs[i + (j+nys)*nx].re;
+
+      *savg = *savg + s[i + j*nx];
+      if(s[i + j*nx] > *smax)
+         *smax = s[i + j*nx];
+      }
+   }
+*savg = (*savg)/(float)(nx*ny);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/include.h
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/include.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/include.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,15 @@
+#include <errno.h>
+#include <fcntl.h>
+#include <math.h>
+#include <stdio.h>
+#include <stdarg.h>
+#include <unistd.h>
+#include <stdlib.h>
+
+#include <sys/file.h>
+#include <sys/resource.h>
+#include <sys/signal.h>
+#include <sys/stat.h>
+#include <sys/syscall.h>
+#include <sys/time.h>
+#include <sys/types.h>

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/iofunc.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/iofunc.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/iofunc.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,391 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+void write_field(char *file,struct pointsource *ps,char *type,int nx,int ny,float *dx,float *dy)
+{
+FILE *fpw, *fopfile();
+float xx, yy;
+int i, j;
+
+fpw = fopfile(file,"w");
+for(j=0;j<ny;j++)
+   {
+   yy = (j + 0.5)*(*dy);
+   for(i=0;i<nx;i++)
+      {
+      xx = (i+0.5)*(*dx);
+
+      if(strcmp(type,"slip") == 0)
+         fprintf(fpw,"%12.5e %12.5e %12.5e\n",xx,yy,ps[i+j*nx].slip);
+      else if(strcmp(type,"rupt") == 0)
+         fprintf(fpw,"%12.5e %12.5e %12.5e\n",xx,yy,ps[i+j*nx].rupt);
+      }
+   }
+fclose(fpw);
+}
+
+void write_spec(char *file,float *as,struct complex *slip,int nx,int ny,float *dx,float *dy,float *dkx,float *dky,float *xl,float *yl,int kflag)
+{
+FILE *fpw;
+float kx, ky, amp, amp0, lamp;
+float xl2, yl2, fac;
+int i, j, ip;
+
+float hcoef = 1.8;  /* H=0.8, hcoef = H + 1 */
+
+xl2 = (*xl)*(*xl);
+yl2 = (*yl)*(*yl);
+
+fft2d(slip,nx,ny,-1,dx,dy);
+
+fpw = fopfile(file,"w");
+
+/* this will normalize max spectrum to one */
+amp0 = sqrt(slip[0].re*slip[0].re + slip[0].im*slip[0].im);
+
+for(j=0;j<=ny/2;j++)
+   {
+   if(j<=ny/2)
+      ky = j*(*dky);
+   else
+      ky = (j-ny)*(*dky);
+
+   for(i=0;i<=nx/2;i++)
+      {
+      if(i<=nx/2)
+         kx = i*(*dkx);
+      else
+         kx = (i-nx)*(*dkx);
+
+      ip = i + j*nx;
+
+      amp = kx*kx*xl2 + ky*ky*yl2;
+
+      /* default is somerville scaling */
+      fac = 1.0/sqrt(1.0 + amp*amp);
+
+      if(kflag == MAI_FLAG) /* mai scaling */
+         {
+         fac = exp((hcoef)*log(1.0+amp));
+         fac = 1.0/sqrt(fac);
+	 }
+
+      if(kflag == SOMERVILLE_FLAG)      /* somerville scaling */
+         fac = 1.0/sqrt(1.0 + amp*amp);
+
+      amp = sqrt(slip[ip].re*slip[ip].re + slip[ip].im*slip[ip].im);
+      amp = amp/amp0;
+
+      lamp = -1.e+20;
+      if(amp > 0.0)
+	 lamp = log10(amp/fac);
+
+      fprintf(fpw,"%13.5e %13.5e %12.5e %12.5e\n",kx,ky,lamp,180*atan(slip[ip].im/slip[ip].re)/3.14159);
+
+      as[ip] = as[ip] + lamp;
+      }
+   }
+fclose(fpw);
+
+fft2d(slip,nx,ny,1,dkx,dky);
+}
+
+void write_avgspec(char *file,float *as,int ns,int nx,int ny,float *dkx,float *dky)
+{
+FILE *fpw;
+float kx, ky, fac;
+int i, j, ip;
+
+fac = 1.0/(float)(ns);
+
+fpw = fopfile(file,"w");
+
+for(j=0;j<=ny/2;j++)
+   {
+   ky = j*(*dky);
+
+   for(i=0;i<=nx/2;i++)
+      {
+      kx = i*(*dkx);
+      ip = i + j*nx;
+      fprintf(fpw,"%13.5e %13.5e %12.5e\n",kx,ky,fac*as[ip]);
+      }
+   }
+fclose(fpw);
+}
+
+FILE *fopfile(char *name,char *mode)
+{
+FILE *fp;
+
+if((fp = fopen(name,mode)) == NULL)
+   {
+   fprintf(stderr,"CAN'T FOPEN FILE = %s, MODE = %s\n", name, mode);
+   exit(-1);
+   }
+return(fp);
+}
+
+int opfile_ro(char *name)
+{
+int fd;
+if ((fd = open (name, RDONLY_FLAGS, 0444)) == -1)
+   fprintf (stderr, "CAN'T OPEN FILE %s\n", name);
+return (fd);
+}
+
+int opfile(char *name)
+{
+int fd;
+if ((fd = open (name, RDWR_FLAGS, 0664)) == -1)
+   fprintf (stderr, "CAN'T OPEN FILE %s\n", name);
+return (fd);
+}
+
+int croptrfile(char *name)
+{
+int fd;
+if ((fd = open (name, CROPTR_FLAGS, 0664)) == -1)
+   fprintf (stderr, "CAN'T OPEN FILE %s\n", name);
+return (fd);
+}
+
+int reed(int fd, void *pntr, int length)
+{
+int temp;
+if ((temp = read(fd, pntr, length)) < length)
+   {
+   fprintf (stderr, "READ ERROR\n");
+   fprintf (stderr, "%d attempted  %d read\n", length, temp);
+   exit(-1);
+   }
+return(temp);
+}
+
+int rite(int fd, void *pntr, int length)
+{
+int temp;
+if ((temp = write(fd, pntr, length)) < length)
+   {
+   fprintf (stderr, "WRITE ERROR\n");
+   fprintf (stderr, "%d attempted  %d written\n", length, temp);
+   exit(-1);
+   }
+return(temp);
+}
+
+struct pointsource *read_ruppars(char *file,struct pointsource *psrc,float *mag,int *nx,int *ny,float *dx,float *dy,float *dtop,float *stk,float *dip,float *elon,float *elat)
+{
+FILE *fpr, *fopfile();
+float area;
+int i, nn;
+char str[1024];
+
+double rperd = 0.017453293;
+
+*dtop = 1.0e+15;
+*stk = 0.0;
+*dip = 0.0;
+*elon = 0.0;
+*elat = 0.0;
+
+if(strcmp(file,"stdin") == 0)
+   fpr = stdin;
+else
+   fpr = fopfile(file,"r");
+
+fgets(str,1024,fpr);   /* Probability = <float> */
+
+fgets(str,1024,fpr);   /* Magnitude = <float> */
+sscanf(str,"%*s %*s %f",mag);
+
+fgets(str,1024,fpr);   /* GridSpacing = <float> */
+sscanf(str,"%*s %*s %f",dx);
+
+if(*dx == (float)(0.0))
+   {
+   fprintf(stderr,"***** input error\n");
+   fprintf(stderr,"      GridSpacing = 0.0, exiting...\n");
+   exit(-1);
+   }
+
+*dy = *dx;
+
+fgets(str,1024,fpr);   /* NumRows = <int> */
+sscanf(str,"%*s %*s %d",ny);
+
+fgets(str,1024,fpr);   /* NumCols = <int> */
+sscanf(str,"%*s %*s %d",nx);
+
+fgets(str,1024,fpr);   /* header comment */
+
+psrc = (struct pointsource *)check_realloc(psrc,(*nx)*(*ny)*sizeof(struct pointsource));
+
+area = (*dx)*(*dy)*1.0e+10;  /* km -> cm */
+
+for(i=0;i<(*nx)*(*ny);i++)
+   {
+   fgets(str,1024,fpr);   /* Lat , Lon , Depth , Rake , Dip , Strike */
+   sscanf(str,"%f %f %f %f %f %f",&psrc[i].lat,
+                                  &psrc[i].lon,
+                                  &psrc[i].dep,
+                                  &psrc[i].rak,
+                                  &psrc[i].dip,
+                                  &psrc[i].stk);
+
+   psrc[i].area = area;
+
+   if(psrc[i].dep < *dtop)
+      *dtop = psrc[i].dep;
+
+   *stk = *stk + psrc[i].stk;
+   *dip = *dip + psrc[i].dip;
+   }
+fclose(fpr);
+
+*stk = *stk/((*nx)*(*ny));
+*dip = *dip/((*nx)*(*ny));
+
+nn = 0;
+for(i=0;i<(*nx)*(*ny);i++)
+   {
+   if(psrc[i].dep < (*dtop + 0.01))
+      {
+      *elon = *elon + psrc[i].lon;
+      *elat = *elat + psrc[i].lat;
+      nn++;
+      }
+   }
+
+/* adjust for half subfault width */
+*dtop = (*dtop) - 0.5*(*dx)*sin((*dip)*rperd);
+
+if(nn == 0)
+   nn++;
+
+*elon = *elon/nn;
+*elat = *elat/nn;
+
+return(psrc);
+}
+
+struct pointsource *set_ruppars(struct pointsource *psrc,float *mag,int *nx,int *ny,float *dx,float *dy,float *dtop,float *stk,float *dip,float *rak,float *elon,float *elat)
+{
+float area;
+float cosA, sinA, cosD, sinD, fwid, flen;
+float xx, yy, zz, dd, sn, se;
+int i, j, ip;
+
+double rperd = 0.017453293;
+
+psrc = (struct pointsource *)check_realloc(psrc,(*nx)*(*ny)*sizeof(struct pointsource));
+
+area = (*dx)*(*dy)*1.0e+10;  /* km -> cm */
+flen = (*nx)*(*dx);
+fwid = (*ny)*(*dy);
+
+cosA = cos((*stk)*rperd);
+sinA = sin((*stk)*rperd);
+cosD = cos((*dip)*rperd);
+sinD = sin((*dip)*rperd);
+for(j=0;j<(*ny);j++)
+   {
+   dd = (j + 0.5)*(*dy);
+   yy = dd*cosD;
+   zz = (*dtop) + dd*sinD;
+
+   for(i=0;i<(*nx);i++)
+      {
+      ip = i + j*(*nx);
+      xx = (i+0.5)*(*dx) - 0.5*flen;
+
+      se = xx*sinA + yy*cosA;
+      sn = xx*cosA - yy*sinA;
+      set_ll(elon,elat,&psrc[ip].lon,&psrc[ip].lat,&sn,&se);
+
+      psrc[ip].dep = zz;
+      psrc[ip].stk = (*stk);
+      psrc[ip].dip = (*dip);
+      psrc[ip].rak = (*rak);
+      psrc[ip].area = area;
+      }
+   }
+
+return(psrc);
+}
+
+struct pointsource *read_gsfpars(char *file,struct pointsource *psrc,struct generic_slip *gslip,float *dx,float *dy,float *dtop,float *dip)
+{
+FILE *fpr, *fopfile();
+int i, nn;
+char str[1024];
+struct slippars *spar;
+
+double rperd = 0.017453293;
+
+*dtop = 1.0e+15;
+*dip = 0.0;
+
+if(strcmp(file,"stdin") == 0)
+   fpr = stdin;
+else
+   fpr = fopfile(file,"r");
+
+fgets(str,1024,fpr);
+while(strncmp(str,"#",1) == 0)
+   fgets(str,1024,fpr);
+
+sscanf(str,"%d",&gslip->np);
+
+psrc = (struct pointsource *)check_realloc(psrc,gslip->np*sizeof(struct pointsource));
+gslip->spar = (struct slippars *)check_realloc(gslip->spar,gslip->np*sizeof(struct slippars));
+spar = gslip->spar;
+
+i = 0;
+while(fgets(str,1024,fpr) != NULL)
+   {
+   sscanf(str,"%f %f %f %f %f %f %f %f %f %f %d",&spar[i].lon,
+                                     &spar[i].lat,
+                                     &spar[i].dep,
+                                     &spar[i].ds,
+                                     &spar[i].dw,
+                                     &spar[i].stk,
+                                     &spar[i].dip,
+                                     &spar[i].rake,
+                                     &spar[i].slip,
+                                     &spar[i].tinit,
+                                     &spar[i].segno);
+
+
+   psrc[i].lon = spar[i].lon;
+   psrc[i].lat = spar[i].lat;
+   psrc[i].dep = spar[i].dep;
+   psrc[i].stk = spar[i].stk;
+   psrc[i].dip = spar[i].dip;
+   psrc[i].rak = spar[i].rake;
+   psrc[i].area = spar[i].ds*spar[i].dw*1.0e+10;
+
+   if(psrc[i].dep < *dtop)
+      *dtop = psrc[i].dep;
+
+   *dip = *dip + psrc[i].dip;
+   *dx = *dx + spar[i].ds;
+   *dy = *dy + spar[i].dw;
+
+   i++;
+   }
+fclose(fpr);
+
+*dip = *dip/(gslip->np);
+*dx = *dx/(gslip->np);
+*dy = *dy/(gslip->np);
+
+/* adjust for half subfault width */
+*dtop = (*dtop) - 0.5*(*dy)*sin((*dip)*rperd);
+if(*dtop < 0.0)
+   *dtop = 0.0;
+
+return(psrc);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/makefile
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/makefile	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/makefile	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,44 @@
+HEADS = include.h structure.h function.h defs.h
+OBJS = fourg.o iofunc.o misc.o slip.o ruptime.o srf_subs.o
+
+GETPAR = ${HOME}/Getpar/getpar/lib
+
+LIBS = -lm ${GETPAR}/libget.a
+LDLIBS = ${OBJS} ${LIBS}
+
+#LF_FLAGS = -D_FILE_OFFSET_BITS=32
+#
+# use following for large file capability
+LF_FLAGS = -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
+
+UFLAGS = -O3
+
+CC = gcc
+
+CFLAGS = ${UFLAGS} ${LF_FLAGS}
+FFLAGS = ${UFLAGS} -ffixed-line-length-132
+
+##### make options
+
+generf : generf.o ${OBJS}
+	g77 -o generf generf.o ${LDLIBS}
+
+genslip-v2.1 : genslip-v2.1.o ${OBJS}
+	g77 -o genslip-v2.1 genslip-v2.1.o ${LDLIBS}
+
+genslip-v2.0 : genslip-v2.0.o ${OBJS}
+	g77 -o genslip-v2.0 genslip-v2.0.o ${LDLIBS}
+
+genslip-mreal : genslip-mreal.o ${OBJS}
+	g77 -o genslip-mreal genslip-mreal.o ${LDLIBS}
+
+genslip-mreal_OLD-IO : genslip-mreal_OLD-IO.o ${OBJS}
+	g77 -o genslip-mreal_OLD-IO genslip-mreal_OLD-IO.o ${LDLIBS}
+
+genslip : genslip.o ${OBJS}
+	g77 -o genslip genslip.o ${LDLIBS}
+
+${OBJS} : ${HEADS}
+
+clean :
+	-rm -f ${OBJS}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/misc.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/misc.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/misc.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,135 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+void *check_malloc(size_t len)
+{
+void *ptr;
+
+ptr = (void *) malloc (len);
+
+if(ptr == NULL)
+   {
+   fprintf(stderr,"*****  memory allocation error\n");
+   exit(-1);
+   }
+
+return(ptr);
+}
+
+void *check_realloc(void *ptr,size_t len)
+{
+ptr = (char *) realloc (ptr,len);
+
+if(ptr == NULL)
+   {
+   fprintf(stderr,"*****  memory reallocation error\n");
+   exit(-1);
+   }
+
+return(ptr);
+}
+
+static  long    frandx = 1;
+
+/* frand() returns a uniform distribution of random numbers
+ * in the range -1.0 -> 1.0.
+ */
+double frand(void)
+{
+frandx = (frandx * 1103515245 + 12345) & 0x7fffffff;
+return((double)(frandx)/1073741824.0 - 1.0);
+}
+
+/* sfrand() returns a uniform distribution of random numbers
+ * in the range -1.0 -> 1.0.
+ */
+double sfrand(long *seed)
+{
+*seed = ((*seed) * 1103515245 + 12345) & 0x7fffffff;
+return((double)(*seed)/1073741824.0 - 1.0);
+}
+
+zapit(s,n)
+float *s;
+int n;
+{
+while(n--)
+   {
+   s[0] = 0.0;
+   s++;
+   }
+}
+
+void set_ne(float *elon,float *elat,float *slon,float *slat,float *sn,float *se)
+{
+float kperd_n, kperd_e;
+double e2, den, g2, lat0;
+float cosA, sinA;
+
+double rperd = 0.017453293;
+double radius = 6378.139;
+double f = 298.256;
+
+f = 1.0/f;
+e2 = 2.0*f - f*f;
+g2 = e2/((1.0 - f)*(1.0 - f));
+
+lat0 = atan((1.0 - f)*tan((*elat)*rperd));
+
+cosA = cos(lat0);
+sinA = sin(lat0);
+
+den = sqrt(1.0/(1.0 + g2*sinA*sinA));
+kperd_e = rperd*radius*cosA*den;
+kperd_n = rperd*radius*(sqrt(1.0 + g2*sinA*sinA*(2.0 + g2)))*den*den*den;
+
+*sn = ((*slat) - (*elat))*kperd_n;
+*se = ((*slon) - (*elon))*kperd_e;
+}
+
+void set_ll(float *elon,float *elat,float *slon,float *slat,float *sn,float *se)
+{
+float kperd_n, kperd_e;
+double e2, den, g2, lat0;
+float cosA, sinA;
+
+double rperd = 0.017453293;
+double radius = 6378.139;
+double f = 298.256;
+
+f = 1.0/f;
+e2 = 2.0*f - f*f;
+g2 = e2/((1.0 - f)*(1.0 - f));
+
+lat0 = atan((1.0 - f)*tan((*elat)*rperd));
+
+cosA = cos(lat0);
+sinA = sin(lat0);
+
+den = sqrt(1.0/(1.0 + g2*sinA*sinA));
+kperd_e = rperd*radius*cosA*den;
+kperd_n = rperd*radius*(sqrt(1.0 + g2*sinA*sinA*(2.0 + g2)))*den*den*den;
+
+*slat = (*sn)/kperd_n + *elat;
+*slon = (*se)/kperd_e + *elon;
+}
+
+void swap_in_place(int n,char *cbuf)
+{
+char cv;
+
+while(n--)
+   {
+   cv = cbuf[0];
+   cbuf[0] = cbuf[3];
+   cbuf[3] = cv;
+
+   cv = cbuf[1];
+   cbuf[1] = cbuf[2];
+   cbuf[2] = cv;
+
+   cbuf = cbuf + 4;
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/mmm
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/mmm	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/mmm	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,200 @@
+1.0
+PLANE 1
+ -118.0000   34.0000     8     8    32.00    32.00
+   0   90     1.00     0.00    24.00
+POINTS 64
+ -118.0000   33.8741    3.0000    0   90  1.60000e+11     8.7956  1.00000e-01
+   0     4.87      9     0.00      0     0.00      0
+  0.00000e+00  8.11946e+00  1.62389e+01  8.11946e+00  6.49557e+00  4.87168e+00
+  3.24778e+00  1.62389e+00  0.00000e+00
+ -118.0000   33.9101    3.0000    0   90  1.60000e+11     8.3031  1.00000e-01
+   0     3.84      9     0.00      0     0.00      0
+  0.00000e+00  6.39382e+00  1.27876e+01  6.39382e+00  5.11506e+00  3.83629e+00
+  2.55753e+00  1.27876e+00  0.00000e+00
+ -118.0000   33.9460    3.0000    0   90  1.60000e+11     7.7315  1.00000e-01
+   0     4.43      9     0.00      0     0.00      0
+  0.00000e+00  7.38597e+00  1.47719e+01  7.38597e+00  5.90877e+00  4.43158e+00
+  2.95439e+00  1.47719e+00  0.00000e+00
+ -118.0000   33.9820    3.0000    0   90  1.60000e+11     8.2204  1.00000e-01
+   0     0.00      0     0.00      0     0.00      0
+ -118.0000   34.0180    3.0000    0   90  1.60000e+11     7.7666  1.00000e-01
+   0     2.73      9     0.00      0     0.00      0
+  0.00000e+00  4.54521e+00  9.09043e+00  4.54521e+00  3.63617e+00  2.72713e+00
+  1.81809e+00  9.09043e-01  0.00000e+00
+ -118.0000   34.0540    3.0000    0   90  1.60000e+11     7.6088  1.00000e-01
+   0     5.17      9     0.00      0     0.00      0
+  0.00000e+00  8.61448e+00  1.72290e+01  8.61448e+00  6.89159e+00  5.16869e+00
+  3.44579e+00  1.72290e+00  0.00000e+00
+ -118.0000   34.0899    3.0000    0   90  1.60000e+11     8.9413  1.00000e-01
+   0     0.00      0     0.00      0     0.00      0
+ -118.0000   34.1259    3.0000    0   90  1.60000e+11     9.5167  1.00000e-01
+   0     0.54      9     0.00      0     0.00      0
+  0.00000e+00  8.95621e-01  1.79124e+00  8.95621e-01  7.16497e-01  5.37373e-01
+  3.58249e-01  1.79124e-01  0.00000e+00
+ -118.0000   33.8741    7.0000    0   90  1.60000e+11     7.8310  1.00000e-01
+   0     3.06      6     0.00      0     0.00      0
+  0.00000e+00  7.99453e+00  1.59891e+01  4.39699e+00  2.19849e+00  0.00000e+00
+ -118.0000   33.9101    7.0000    0   90  1.60000e+11     7.0953  1.00000e-01
+   0     2.93      6     0.00      0     0.00      0
+  0.00000e+00  7.65428e+00  1.53086e+01  4.20985e+00  2.10493e+00  0.00000e+00
+ -118.0000   33.9460    7.0000    0   90  1.60000e+11     6.3970  1.00000e-01
+   0     3.80      6     0.00      0     0.00      0
+  0.00000e+00  9.92506e+00  1.98501e+01  5.45878e+00  2.72939e+00  0.00000e+00
+ -118.0000   33.9820    7.0000    0   90  1.60000e+11     5.9025  1.00000e-01
+   0     4.99      6     0.00      0     0.00      0
+  0.00000e+00  1.30575e+01  2.61150e+01  7.18162e+00  3.59081e+00  0.00000e+00
+ -118.0000   34.0180    7.0000    0   90  1.60000e+11     5.9199  1.00000e-01
+   0     4.89      6     0.00      0     0.00      0
+  0.00000e+00  1.27845e+01  2.55690e+01  7.03147e+00  3.51574e+00  0.00000e+00
+ -118.0000   34.0540    7.0000    0   90  1.60000e+11     6.0437  1.00000e-01
+   0     5.92      6     0.00      0     0.00      0
+  0.00000e+00  1.54766e+01  3.09533e+01  8.51215e+00  4.25608e+00  0.00000e+00
+ -118.0000   34.0899    7.0000    0   90  1.60000e+11     7.1986  1.00000e-01
+   0     2.31      6     0.00      0     0.00      0
+  0.00000e+00  6.03131e+00  1.20626e+01  3.31722e+00  1.65861e+00  0.00000e+00
+ -118.0000   34.1259    7.0000    0   90  1.60000e+11     7.6745  1.00000e-01
+   0     4.00      6     0.00      0     0.00      0
+  0.00000e+00  1.04535e+01  2.09070e+01  5.74943e+00  2.87471e+00  0.00000e+00
+ -118.0000   33.8741   11.0000    0   90  1.60000e+11     6.4957  1.00000e-01
+   0     4.40      5     0.00      0     0.00      0
+  0.00000e+00  1.29542e+01  2.59084e+01  5.18167e+00  0.00000e+00
+ -118.0000   33.9101   11.0000    0   90  1.60000e+11     5.5281  1.00000e-01
+   0     4.94      5     0.00      0     0.00      0
+  0.00000e+00  1.45320e+01  2.90639e+01  5.81279e+00  0.00000e+00
+ -118.0000   33.9460   11.0000    0   90  1.60000e+11     5.0511  1.00000e-01
+   0     3.80      5     0.00      0     0.00      0
+  0.00000e+00  1.11800e+01  2.23600e+01  4.47200e+00  0.00000e+00
+ -118.0000   33.9820   11.0000    0   90  1.60000e+11     4.9144  1.00000e-01
+   0     2.41      5     0.00      0     0.00      0
+  0.00000e+00  7.07842e+00  1.41568e+01  2.83137e+00  0.00000e+00
+ -118.0000   34.0180   11.0000    0   90  1.60000e+11     4.8326  1.00000e-01
+   0     2.90      5     0.00      0     0.00      0
+  0.00000e+00  8.52575e+00  1.70515e+01  3.41030e+00  0.00000e+00
+ -118.0000   34.0540   11.0000    0   90  1.60000e+11     4.9799  1.00000e-01
+   0     4.23      5     0.00      0     0.00      0
+  0.00000e+00  1.24386e+01  2.48771e+01  4.97543e+00  0.00000e+00
+ -118.0000   34.0899   11.0000    0   90  1.60000e+11     5.3873  1.00000e-01
+   0     5.79      5     0.00      0     0.00      0
+  0.00000e+00  1.70215e+01  3.40431e+01  6.80861e+00  0.00000e+00
+ -118.0000   34.1259   11.0000    0   90  1.60000e+11     6.6977  1.00000e-01
+   0     3.19      5     0.00      0     0.00      0
+  0.00000e+00  9.38223e+00  1.87645e+01  3.75289e+00  0.00000e+00
+ -118.0000   33.8741   15.0000    0   90  1.60000e+11     5.5996  1.00000e-01
+   0     4.14      5     0.00      0     0.00      0
+  0.00000e+00  1.21867e+01  2.43734e+01  4.87469e+00  0.00000e+00
+ -118.0000   33.9101   15.0000    0   90  1.60000e+11     4.7877  1.00000e-01
+   0     2.86      5     0.00      0     0.00      0
+  0.00000e+00  8.41131e+00  1.68226e+01  3.36453e+00  0.00000e+00
+ -118.0000   33.9460   15.0000    0   90  1.60000e+11     4.1724  1.00000e-01
+   0     1.57      5     0.00      0     0.00      0
+  0.00000e+00  4.60775e+00  9.21549e+00  1.84310e+00  0.00000e+00
+ -118.0000   33.9820   15.0000    0   90  1.60000e+11     3.6770  1.00000e-01
+   0     1.60      5     0.00      0     0.00      0
+  0.00000e+00  4.71653e+00  9.43306e+00  1.88661e+00  0.00000e+00
+ -118.0000   34.0180   15.0000    0   90  1.60000e+11     3.5737  1.00000e-01
+   0     2.22      5     0.00      0     0.00      0
+  0.00000e+00  6.54226e+00  1.30845e+01  2.61690e+00  0.00000e+00
+ -118.0000   34.0540   15.0000    0   90  1.60000e+11     4.0973  1.00000e-01
+   0     2.02      5     0.00      0     0.00      0
+  0.00000e+00  5.93568e+00  1.18714e+01  2.37427e+00  0.00000e+00
+ -118.0000   34.0899   15.0000    0   90  1.60000e+11     4.5270  1.00000e-01
+   0     4.43      5     0.00      0     0.00      0
+  0.00000e+00  1.30200e+01  2.60400e+01  5.20800e+00  0.00000e+00
+ -118.0000   34.1259   15.0000    0   90  1.60000e+11     5.4564  1.00000e-01
+   0     5.00      5     0.00      0     0.00      0
+  0.00000e+00  1.47182e+01  2.94364e+01  5.88727e+00  0.00000e+00
+ -118.0000   33.8741   19.0000    0   90  1.60000e+11     4.8906  1.00000e-01
+   0     4.15      5     0.00      0     0.00      0
+  0.00000e+00  1.22103e+01  2.44207e+01  4.88413e+00  0.00000e+00
+ -118.0000   33.9101   19.0000    0   90  1.60000e+11     4.2561  1.00000e-01
+   0     0.85      5     0.00      0     0.00      0
+  0.00000e+00  2.51043e+00  5.02085e+00  1.00417e+00  0.00000e+00
+ -118.0000   33.9460   19.0000    0   90  1.60000e+11     3.3405  1.00000e-01
+   0     0.00      0     0.00      0     0.00      0
+ -118.0000   33.9820   19.0000    0   90  1.60000e+11     2.5431  1.00000e-01
+   0     0.50      5     0.00      0     0.00      0
+  0.00000e+00  1.46134e+00  2.92268e+00  5.84536e-01  0.00000e+00
+ -118.0000   34.0180   19.0000    0   90  1.60000e+11     2.3833  1.00000e-01
+   0     1.46      5     0.00      0     0.00      0
+  0.00000e+00  4.28547e+00  8.57094e+00  1.71419e+00  0.00000e+00
+ -118.0000   34.0540   19.0000    0   90  1.60000e+11     2.6069  1.00000e-01
+   0     4.41      5     0.00      0     0.00      0
+  0.00000e+00  1.29704e+01  2.59408e+01  5.18817e+00  0.00000e+00
+ -118.0000   34.0899   19.0000    0   90  1.60000e+11     3.4700  1.00000e-01
+   0     5.58      5     0.00      0     0.00      0
+  0.00000e+00  1.64067e+01  3.28133e+01  6.56267e+00  0.00000e+00
+ -118.0000   34.1259   19.0000    0   90  1.60000e+11     5.0825  1.00000e-01
+   0     3.00      5     0.00      0     0.00      0
+  0.00000e+00  8.81821e+00  1.76364e+01  3.52728e+00  0.00000e+00
+ -118.0000   33.8741   23.0000    0   90  1.60000e+11     5.0359  1.00000e-01
+   0     0.85      5     0.00      0     0.00      0
+  0.00000e+00  2.50625e+00  5.01250e+00  1.00250e+00  0.00000e+00
+ -118.0000   33.9101   23.0000    0   90  1.60000e+11     3.6133  1.00000e-01
+   0     1.60      5     0.00      0     0.00      0
+  0.00000e+00  4.71946e+00  9.43891e+00  1.88778e+00  0.00000e+00
+ -118.0000   33.9460   23.0000    0   90  1.60000e+11     2.0358  1.00000e-01
+   0     3.43      5     0.00      0     0.00      0
+  0.00000e+00  1.00812e+01  2.01623e+01  4.03246e+00  0.00000e+00
+ -118.0000   33.9820   23.0000    0   90  1.60000e+11     0.9295  1.00000e-01
+   0     3.16      5     0.00      0     0.00      0
+  0.00000e+00  9.30768e+00  1.86154e+01  3.72307e+00  0.00000e+00
+ -118.0000   34.0180   23.0000    0   90  1.60000e+11     1.1312  1.00000e-01
+   0     1.95      5     0.00      0     0.00      0
+  0.00000e+00  5.74253e+00  1.14851e+01  2.29701e+00  0.00000e+00
+ -118.0000   34.0540   23.0000    0   90  1.60000e+11     1.9678  1.00000e-01
+   0     3.84      5     0.00      0     0.00      0
+  0.00000e+00  1.12842e+01  2.25685e+01  4.51370e+00  0.00000e+00
+ -118.0000   34.0899   23.0000    0   90  1.60000e+11     3.5021  1.00000e-01
+   0     2.27      5     0.00      0     0.00      0
+  0.00000e+00  6.68470e+00  1.33694e+01  2.67388e+00  0.00000e+00
+ -118.0000   34.1259   23.0000    0   90  1.60000e+11     4.7749  1.00000e-01
+   0     2.42      5     0.00      0     0.00      0
+  0.00000e+00  7.12004e+00  1.42401e+01  2.84801e+00  0.00000e+00
+ -118.0000   33.8741   27.0000    0   90  1.60000e+11     4.7195  1.00000e-01
+   0     2.75      5     0.00      0     0.00      0
+  0.00000e+00  8.09932e+00  1.61986e+01  3.23973e+00  0.00000e+00
+ -118.0000   33.9101   27.0000    0   90  1.60000e+11     3.3954  1.00000e-01
+   0     2.91      5     0.00      0     0.00      0
+  0.00000e+00  8.57235e+00  1.71447e+01  3.42894e+00  0.00000e+00
+ -118.0000   33.9460   27.0000    0   90  1.60000e+11     2.2033  1.00000e-01
+   0     2.42      5     0.00      0     0.00      0
+  0.00000e+00  7.11995e+00  1.42399e+01  2.84798e+00  0.00000e+00
+ -118.0000   33.9820   27.0000    0   90  1.60000e+11     0.9704  1.00000e-01
+   0     2.92      5     0.00      0     0.00      0
+  0.00000e+00  8.58539e+00  1.71708e+01  3.43416e+00  0.00000e+00
+ -118.0000   34.0180   27.0000    0   90  1.60000e+11     1.1767  1.00000e-01
+   0     1.68      5     0.00      0     0.00      0
+  0.00000e+00  4.93898e+00  9.87796e+00  1.97559e+00  0.00000e+00
+ -118.0000   34.0540   27.0000    0   90  1.60000e+11     1.9503  1.00000e-01
+   0     3.94      5     0.00      0     0.00      0
+  0.00000e+00  1.15932e+01  2.31863e+01  4.63727e+00  0.00000e+00
+ -118.0000   34.0899   27.0000    0   90  1.60000e+11     3.4187  1.00000e-01
+   0     2.77      5     0.00      0     0.00      0
+  0.00000e+00  8.16005e+00  1.63201e+01  3.26402e+00  0.00000e+00
+ -118.0000   34.1259   27.0000    0   90  1.60000e+11     4.2808  1.00000e-01
+   0     5.39      5     0.00      0     0.00      0
+  0.00000e+00  1.58547e+01  3.17094e+01  6.34188e+00  0.00000e+00
+ -118.0000   33.8741   31.0000    0   90  1.60000e+11     4.6922  1.00000e-01
+   0     5.07      5     0.00      0     0.00      0
+  0.00000e+00  1.49170e+01  2.98340e+01  5.96680e+00  0.00000e+00
+ -118.0000   33.9101   31.0000    0   90  1.60000e+11     3.3362  1.00000e-01
+   0     6.16      5     0.00      0     0.00      0
+  0.00000e+00  1.81320e+01  3.62639e+01  7.25278e+00  0.00000e+00
+ -118.0000   33.9460   31.0000    0   90  1.60000e+11     2.8535  1.00000e-01
+   0     2.79      5     0.00      0     0.00      0
+  0.00000e+00  8.19178e+00  1.63836e+01  3.27671e+00  0.00000e+00
+ -118.0000   33.9820   31.0000    0   90  1.60000e+11     2.3974  1.00000e-01
+   0     1.25      5     0.00      0     0.00      0
+  0.00000e+00  3.68937e+00  7.37874e+00  1.47575e+00  0.00000e+00
+ -118.0000   34.0180   31.0000    0   90  1.60000e+11     1.9772  1.00000e-01
+   0     3.78      5     0.00      0     0.00      0
+  0.00000e+00  1.11185e+01  2.22370e+01  4.44740e+00  0.00000e+00
+ -118.0000   34.0540   31.0000    0   90  1.60000e+11     2.5541  1.00000e-01
+   0     4.58      5     0.00      0     0.00      0
+  0.00000e+00  1.34852e+01  2.69704e+01  5.39408e+00  0.00000e+00
+ -118.0000   34.0899   31.0000    0   90  1.60000e+11     3.9935  1.00000e-01
+   0     2.21      5     0.00      0     0.00      0
+  0.00000e+00  6.51087e+00  1.30217e+01  2.60435e+00  0.00000e+00
+ -118.0000   34.1259   31.0000    0   90  1.60000e+11     5.0187  1.00000e-01
+   0     3.11      5     0.00      0     0.00      0
+  0.00000e+00  9.14592e+00  1.82918e+01  3.65837e+00  0.00000e+00

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/ruptime.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/ruptime.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/ruptime.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,440 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+void default_velmodel(struct velmodel *vm)
+{
+int i;
+
+vm->nlay = 17;
+
+vm->vp = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->vs = (double *)check_malloc(vm->nlay*sizeof(double));
+vm->den = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->th = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->dep = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->mu = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->invb2 = (double *)check_malloc(vm->nlay*sizeof(double));
+
+vm->th[ 0] = 0.002; vm->vp[ 0] = 1.70; vm->vs[ 0] = 0.35; vm->den[ 0] = 2.0;
+vm->th[ 1] = 0.004; vm->vp[ 1] = 1.80; vm->vs[ 1] = 0.55; vm->den[ 1] = 2.1;
+vm->th[ 2] = 0.006; vm->vp[ 2] = 1.80; vm->vs[ 2] = 0.80; vm->den[ 2] = 2.1;
+vm->th[ 3] = 0.008; vm->vp[ 3] = 1.90; vm->vs[ 3] = 0.90; vm->den[ 3] = 2.1;
+vm->th[ 4] = 0.010; vm->vp[ 4] = 2.00; vm->vs[ 4] = 1.00; vm->den[ 4] = 2.2;
+vm->th[ 5] = 0.070; vm->vp[ 5] = 2.40; vm->vs[ 5] = 1.30; vm->den[ 5] = 2.2;
+vm->th[ 6] = 0.200; vm->vp[ 6] = 3.30; vm->vs[ 6] = 1.80; vm->den[ 6] = 2.3;
+vm->th[ 7] = 0.200; vm->vp[ 7] = 3.90; vm->vs[ 7] = 2.20; vm->den[ 7] = 2.3;
+vm->th[ 8] = 0.200; vm->vp[ 8] = 4.15; vm->vs[ 8] = 2.40; vm->den[ 8] = 2.4;
+vm->th[ 9] = 0.300; vm->vp[ 9] = 4.50; vm->vs[ 9] = 2.60; vm->den[ 9] = 2.4;
+vm->th[10] = 2.000; vm->vp[10] = 5.00; vm->vs[10] = 2.90; vm->den[10] = 2.5;
+vm->th[11] = 3.000; vm->vp[11] = 5.70; vm->vs[11] = 3.30; vm->den[11] = 2.5;
+vm->th[12] = 5.000; vm->vp[12] = 6.10; vm->vs[12] = 3.50; vm->den[12] = 2.6;
+vm->th[13] = 5.000; vm->vp[13] = 6.25; vm->vs[13] = 3.60; vm->den[13] = 2.7;
+vm->th[14] = 5.000; vm->vp[14] = 6.45; vm->vs[14] = 3.70; vm->den[14] = 2.7;
+vm->th[15] = 11.00; vm->vp[15] = 6.60; vm->vs[15] = 3.80; vm->den[15] = 2.8;
+vm->th[16] = 999.0; vm->vp[16] = 7.80; vm->vs[16] = 4.50; vm->den[16] = 3.2;
+
+for(i=0;i<vm->nlay;i++)
+   {
+   if(i==0)
+      vm->dep[i] = vm->th[i];
+   else
+      vm->dep[i] = vm->dep[i-1] + vm->th[i];
+
+   vm->mu[i] = vm->vs[i]*vm->vs[i]*vm->den[i]*1.0e+10;  /* in CMS units */
+   }
+}
+
+void read_velmodel(char *vfile,struct velmodel *vm)
+{
+FILE *fpr, *fopfile();
+int i;
+char str[512];
+
+fpr = fopfile(vfile,"r");
+
+fgets(str,512,fpr);
+sscanf(str,"%d",&vm->nlay);
+
+vm->vp = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->vs = (double *)check_malloc(vm->nlay*sizeof(double));
+vm->den = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->th = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->dep = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->mu = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->invb2 = (double *)check_malloc(vm->nlay*sizeof(double));
+
+for(i=0;i<vm->nlay;i++)
+   {
+   fgets(str,512,fpr);
+   sscanf(str,"%f %f %lf %f",&vm->th[i],&vm->vp[i],&vm->vs[i],&vm->den[i]);
+
+   if(i==0)
+      vm->dep[i] = vm->th[i];
+   else
+      vm->dep[i] = vm->dep[i-1] + vm->th[i];
+
+   vm->mu[i] = vm->vs[i]*vm->vs[i]*vm->den[i]*1.0e+10;  /* in CMS units */
+   }
+fclose(fpr);
+}
+
+void conv2vrup(struct velmodel *vm,struct velmodel *rvm,float *dip,float *ztop,float *wid,float *rvf,float *shal_vr)
+{
+int i, j, k;
+float invsinA, dep, zbot;
+char string[256];
+
+float rperd = 0.017453293;
+float dmin = 4.0;
+float dmax = 6.0;
+float rvfac;
+
+rvm->nlay = vm->nlay;
+rvm->vs = (double *)check_malloc(rvm->nlay*sizeof(double));
+rvm->th = (float *)check_malloc(rvm->nlay*sizeof(float));
+rvm->invb2 = (double *)check_malloc(rvm->nlay*sizeof(double));
+
+i = 0;
+dep = vm->th[0];
+while(dep < (*ztop))
+   {
+   i++;
+   dep = dep + vm->th[i];
+   }
+
+zbot = *ztop + (*wid)*sin((*dip)*rperd);
+invsinA = 1.0/sin((*dip)*rperd);
+
+if(dep >= dmax)
+   rvfac = (*rvf);
+else if(dep < dmax && dep > dmin)
+   rvfac = (*rvf)*(1.0 - (1.0 - (*shal_vr))*(dmax-dep)/(dmax-dmin));
+else
+   rvfac = (*rvf)*(*shal_vr);
+
+rvm->th[0] = invsinA*(dep - (*ztop));
+rvm->vs[0] = rvfac*vm->vs[i];
+
+j = i;
+k = 0;
+while(dep < zbot)
+   {
+   j++; k++;
+   dep = dep + vm->th[j];
+
+   if(dep >= dmax)
+      rvfac = (*rvf);
+   else if(dep < dmax && dep > dmin)
+      rvfac = (*rvf)*(1.0 - (1.0 - (*shal_vr))*(dmax-dep)/(dmax-dmin));
+   else
+      rvfac = (*rvf)*(*shal_vr);
+
+   rvm->th[k] = invsinA*vm->th[j];
+   rvm->vs[k] = rvfac*vm->vs[j];
+   }
+
+rvm->nlay = k + 1;
+
+for(i=0;i<rvm->nlay;i++)
+   rvm->invb2[i] = 1.0/(rvm->vs[i]*rvm->vs[i]);
+}
+
+get_rupt(vm,h,srcd,recd,srcr,recr,p,rad,tt)
+struct velmodel *vm;
+float *h, *srcr, *recr, *recd, *tt, *srcd;
+double *p, *rad;
+{
+double sth, rth, rng;
+float sdep, rdep;
+float tol;
+float tup, thead;
+int k, slay, rlay, linc;
+
+float tenth = 0.1;
+double eps = 1.0e-12;
+
+tol = tenth*(*h);
+
+rng = *srcr - *recr;
+if(rng < 0.0)
+   rng = -rng;
+
+k = 0;
+sdep = vm->th[0];
+while((*srcd) > sdep)
+   {
+   k++;
+   sdep = sdep + vm->th[k];
+   }
+slay = k;
+
+k = 0;
+rdep = vm->th[0];
+while((*recd) > rdep)
+   {
+   k++;
+   rdep = rdep + vm->th[k];
+   }
+rlay = k;
+
+sth = sdep - *srcd;
+rth = rdep - *recd;
+get_headtime(vm,slay,&sth,rlay,&rth,&rng,&thead);
+
+if(slay != rlay)
+   {
+   if(sdep > rdep)
+      {
+      sth = vm->th[slay] - (sdep - *srcd);
+      rth = rdep - *recd;
+      linc = -1;
+      }
+   else
+      {
+      sth = sdep - *srcd;
+      rth = vm->th[rlay] - (rdep - *recd);
+      linc = 1;
+      }
+
+/*
+   bisection method
+*/
+    bisect_p(vm,slay,&sth,rlay,&rth,p,&eps,&tol,&rng,linc);
+
+         /* get path length and travel time for correct ray parameter */
+
+   get_radtime(vm,slay,&sth,rlay,&rth,p,rad,&tup,linc);
+   }
+else
+   {
+   *rad = sqrt(rng*rng + ((*srcd)-(*recd))*((*srcd)-(*recd)));
+   tup = (*rad)/vm->vs[slay];
+   }
+
+*tt = thead;
+if(tup < thead)
+   *tt = tup;
+/*
+else
+   fprintf(stderr,"*** thead selected\n");
+
+fprintf(stderr,"*** thd= %f tup= %f\n",thead,tup);
+*/
+}
+
+bisect_p(vm,slay,sth,rlay,rth,p,eps,tol,rng,linc)
+struct velmodel *vm;
+double *sth, *rth, *p, *rng, *eps;
+float *tol;
+int linc, slay, rlay;
+{
+double tp0, pp, pm, p0, r0, delr;
+int i, ic;
+
+int nc = 100;
+
+p0 = 1.0/vm->vs[slay];
+for(i=slay+linc;i!=rlay;i=i+linc)
+   {
+   tp0 = 1.0/vm->vs[i];
+   if(tp0 < p0)
+      p0 = tp0;
+   }
+tp0 = 1.0/vm->vs[rlay];
+if(tp0 < p0)
+   p0 = tp0;
+
+*p = *eps;
+
+get_range(vm,slay,sth,rlay,rth,p,&r0,linc);
+
+if(r0 < *rng)  /* if not, then p=0 (vertical ray) */
+   {
+                   /* bracket range with ray parameter extremes */
+
+   ic = 0;
+   while(r0 < *rng && ic < nc)
+      {
+      ic++;
+      *p = p0*(1.0 - (*eps)/(double)(ic*ic));
+      get_range(vm,slay,sth,rlay,rth,p,&r0,linc);
+      }
+
+   pp = *p;
+   pm = *eps;
+
+   delr = r0 - *rng;
+
+/*
+   use bisection to converge to correct ray parameter
+*/
+
+   ic = 0;
+   while(delr > *tol)
+      {
+      *p = 0.5*(pp + pm);
+
+      if(*p == pp || *p == pm) /* beyond double precision accuracy */
+         break;
+
+      get_range(vm,slay,sth,rlay,rth,p,&r0,linc);
+      if(r0 >= *rng)
+         {
+         delr = r0 - *rng;
+         pp = *p;
+         }
+      else
+         {
+         delr = *rng - r0;
+         pm = *p;
+         }
+
+      ic++;
+      if(ic > nc)
+         break;
+      }
+   }
+else
+   *p = 0.0;
+}
+
+get_range(vm,slay,sth,rlay,rth,p,r0,linc)
+struct velmodel *vm;
+double *sth, *rth, *p, *r0;
+int linc, slay, rlay;
+{
+int i;
+double denom, arg;
+double invp2;
+
+invp2 = 1.0/((*p)*(*p));
+
+denom = sqrt(invp2*vm->invb2[slay] - 1.0);
+*r0 = (*sth)/denom;
+
+for(i=slay+linc;i!=rlay;i=i+linc)
+   {
+   denom = sqrt(invp2*vm->invb2[i] - 1.0);
+   *r0 = *r0 + vm->th[i]/denom;
+   }
+
+denom = sqrt(invp2*vm->invb2[rlay] - 1.0);
+*r0 = *r0 + (*rth)/denom;
+}
+
+get_radtime(vm,slay,sth,rlay,rth,p,r0,tt,linc)
+struct velmodel *vm;
+double *sth, *rth, *p, *r0;
+float *tt;
+int linc, slay, rlay;
+{
+int i;
+double r1, rad, arg;
+double denom, invp2;
+
+if(*p > 0.0)
+   {
+   arg = 1.0 - (*p)*(*p)*vm->vs[slay]*vm->vs[slay];
+   denom = sqrt(arg);
+
+   *r0 = (*sth)/denom;
+   *tt = *r0/vm->vs[slay];
+
+   for(i=slay+linc;i!=rlay;i=i+linc)
+      {
+      arg = 1.0 - (*p)*(*p)*vm->vs[i]*vm->vs[i];
+      denom = sqrt(arg);
+
+      rad = vm->th[i]/denom;
+      *r0 = *r0 + rad;
+      *tt = *tt + rad/vm->vs[i];
+      }
+
+   arg = 1.0 - (*p)*(*p)*vm->vs[rlay]*vm->vs[rlay];
+   denom = sqrt(arg);
+
+   rad = (*rth)/denom;
+   *r0 = *r0 + rad;
+   *tt = *tt + rad/vm->vs[rlay];
+   }
+else
+   {
+   *r0 = *sth;
+   *tt = *r0/vm->vs[slay];
+
+   for(i=slay+linc;i!=rlay;i=i+linc)
+      {
+      *r0 = *r0 + vm->th[i];
+      *tt = *tt + vm->th[i]/vm->vs[i];
+      }
+
+   *r0 = *r0 + *rth;
+   *tt = *tt + (*rth)/vm->vs[rlay];
+   }
+}
+
+get_headtime(mod,slay,sth,rlay,rth,rad,tt)
+struct velmodel *mod;
+double *sth, *rth, *rad;
+float *tt;
+int slay, rlay;
+{
+int vflag, j, jj, jst, jnd;
+double inv2, rc, tinc, arg;
+
+jst = rlay;
+if(slay > rlay)
+   jst = slay;
+
+*tt = 1.0e+5;
+for(jnd=jst+1;jnd<mod->nlay;jnd++)
+   {
+   jj = rlay;
+   if(slay < rlay)
+      jj = slay;
+
+   vflag = 1;
+   for(j=jj;j<jnd;j++)
+      {
+      if(mod->vs[j] > mod->vs[jnd])
+	 vflag = -1;
+      }
+
+   if(vflag == 1)
+      {
+      tinc = (*rad)/mod->vs[jnd];
+      inv2 = 1.0/(mod->vs[jnd]*mod->vs[jnd]);
+
+      arg = 1.0/(mod->vs[slay]*mod->vs[slay]) - inv2;
+      arg = sqrt(arg);
+      tinc = tinc + (*sth)*arg;
+      rc = (*sth)/(arg*mod->vs[jnd]);
+
+      for(j=slay+1;j<jnd;j++)
+         {
+         arg = 1.0/(mod->vs[j]*mod->vs[j]) - inv2;
+         arg = sqrt(arg);
+         tinc = tinc + mod->th[j]*arg;
+         rc = rc + mod->th[j]/(arg*mod->vs[jnd]);
+         }
+
+      for(j=rlay+1;j<jnd;j++)
+         {
+         arg = 1.0/(mod->vs[j]*mod->vs[j]) - inv2;
+         arg = sqrt(arg);
+         tinc = tinc + mod->th[j]*arg;
+         rc = rc + mod->th[j]/(arg*mod->vs[jnd]);
+         }
+
+      arg = 1.0/(mod->vs[rlay]*mod->vs[rlay]) - inv2;
+      arg = sqrt(arg);
+      tinc = tinc + (*rth)*arg;
+      rc = rc + (*rth)/(arg*mod->vs[jnd]);
+
+      if(tinc < *tt && rc < (*rad))
+         *tt = tinc;
+      }
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/slip.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/slip.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/slip.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,372 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+void init_slip(struct complex *sc,int nx,int ny,float *st,float *bt)
+{
+float xdamp, ydamp;
+int i;
+
+for(i=0;i<nx*ny;i++)
+   {
+   sc[i].re = 0.5;
+   sc[i].im = 0.0;
+   }
+
+/*
+taper_slip(sc,nx,ny,st,bt);
+*/
+}
+
+void taper_slip(struct complex *sc,int nx,int ny,float *st,float *bt)
+{
+float xdamp, ydamp;
+int ix, iy, xb, yb;
+
+xb = (int)((*st)*nx + 0.5);
+if(xb < 0)
+   xb = 0;
+
+yb = (int)((*bt)*ny + 0.5);
+if(yb < 0)
+   yb = 0;
+
+for(iy=0;iy<yb;iy++)
+   {
+   ydamp = (float)(iy+1)/(float)(yb);
+   for(ix=0;ix<nx;ix++)
+      {
+      xdamp = 1.0;
+      if(ix < xb)
+         xdamp = (float)(ix+1)/(float)(xb);
+      if(ix > nx-xb)
+         xdamp = (float)(nx-ix)/(float)(xb);
+
+      sc[ix+iy*nx].re = xdamp*ydamp*sc[ix+iy*nx].re;
+      sc[ix+(ny-1-iy)*nx].re = xdamp*ydamp*sc[ix+(ny-1-iy)*nx].re;
+      }
+   }
+
+for(iy=yb;iy<ny-yb;iy++)
+   {
+   for(ix=0;ix<xb;ix++)
+      {
+      xdamp = (float)(ix+1)/(float)(xb);
+
+      sc[ix+iy*nx].re = xdamp*sc[ix+iy*nx].re;
+      sc[(nx-1-ix)+iy*nx].re = xdamp*sc[(nx-1-ix)+iy*nx].re;
+      }
+   }
+}
+
+void scale_slip(struct pointsource *ps,struct complex *cs,int nx,int ny,int nys,float *dx,float *dy,float *dtop,float *dip,float *mom,struct velmodel *vm,float *savg,float *smax)
+{
+float sum, fac, sinD, area;
+float zz;
+int i, j, k;
+
+float rperd = 0.017453293;
+
+if(*savg < 0.0)
+   {
+   sinD = sin((*dip)*rperd);
+   area = (*dx)*(*dy)*1.0e+10;    /* in CMS units */
+
+   sum = 0.0;
+   for(j=0;j<ny;j++)
+      {
+      zz = (*dtop) + sinD*(j + 0.5)*(*dy);
+
+      k = 0;
+      while(zz > vm->dep[k] && k < (vm->nlay)-1)
+         k++;
+
+      fac = area*vm->mu[k];
+      for(i=0;i<nx;i++)
+         sum = sum + fac*cs[i + (j+nys)*nx].re;
+      }
+
+   fac = (*mom)/sum;
+
+   *smax = 0.0;
+   *savg = 0.0;
+   for(j=0;j<ny;j++)
+      {
+      for(i=0;i<nx;i++)
+         {
+         ps[i + j*nx].slip = fac*cs[i + (j+nys)*nx].re;
+
+         *savg = *savg + ps[i + j*nx].slip;
+         if(ps[i + j*nx].slip > *smax)
+            *smax = ps[i + j*nx].slip;
+         }
+      }
+   *savg = (*savg)/(float)(nx*ny);
+   }
+else
+   {
+   sinD = sin((*dip)*rperd);
+   area = (*dx)*(*dy)*1.0e+10;    /* in CMS units */
+
+   sum = 0.0;
+   for(j=0;j<ny;j++)
+      {
+      for(i=0;i<nx;i++)
+         {
+         sum = sum + cs[i + (j+nys)*nx].re;
+         }
+      }
+
+   fac = (*savg)*(float)(nx*ny)/(sum);
+
+   *smax = 0.0;
+   *savg = 0.0;
+   for(j=0;j<ny;j++)
+      {
+      for(i=0;i<nx;i++)
+         {
+         ps[i + j*nx].slip = fac*cs[i + (j+nys)*nx].re;
+
+         *savg = *savg + ps[i + j*nx].slip;
+         if(ps[i + j*nx].slip > *smax)
+            *smax = ps[i + j*nx].slip;
+         }
+      }
+   *savg = (*savg)/(float)(nx*ny);
+   }
+}
+
+void kfilt(struct complex *s0,int nx0,int ny0,float *dkx,float *dky,float *xl,float *yl,long *seed,int kflag)
+{
+int i, j, ip;
+float kx, ky, fac, amp, amp0, phs, xl2, yl2;
+float phs1, fac1, wtS, wtD;
+float xp, k2, invkc2;
+int ndkc;
+
+float pi = 3.14159265;
+float hcoef = 1.8;  /* H=0.8, hcoef = H + 1 */
+
+amp0 = sqrt(s0[0].re*s0[0].re + s0[0].im*s0[0].im);
+
+xl2 = (*xl)*(*xl);
+yl2 = (*yl)*(*yl);
+
+/*
+
+   Transition between deterministic and stochastic parts of spectrum
+   are given by
+
+       F = wtS*stoch + wtD*deter
+
+   with
+    
+       wtD = {1 + k2/Kc2}^-(xp)     (kind of a butterworth filter)
+       wtS = 1 - wtD
+
+   and
+
+       k2 = kx*kx + ky*ky          (k-squared)
+       Kc2 = (N*dky)*(N*dkx)       (corner wavenumber of transition)
+
+   The parameter N specifies the number of dk's in the corner (somewhat
+   like a fraction of the total wavenumber space).  The exponent (xp)
+   gives the sharpness of the transition.  Based on very limited
+   testing, I came up with
+
+       N = 4
+       xp = 2.0
+
+*/
+
+xp = 2.0;
+ndkc = 4;
+invkc2 = ndkc*(*dky)*ndkc*(*dkx);
+invkc2 = 1.0/(invkc2);
+
+for(j=0;j<=ny0/2;j++)  /* only do positive half, then use symmetry */
+   {
+   if(j <= ny0/2)
+      ky = j*(*dky);
+   else
+      ky = (j - ny0)*(*dky);
+
+   for(i=0;i<nx0;i++)
+      {
+      if(i <= nx0/2)
+         kx = i*(*dkx);
+      else
+         kx = (i - nx0)*(*dkx);
+
+      ip = i + j*nx0;
+
+      amp = kx*kx*xl2 + ky*ky*yl2;
+
+      /* default is somerville scaling */
+      fac = amp0/sqrt(1.0 + amp*amp);
+
+      if(kflag == MAI_FLAG) /* mai scaling */
+         {
+         fac = exp((hcoef)*log(1.0+amp));
+         fac = amp0/sqrt(fac);
+	 }
+
+      if(kflag == SOMERVILLE_FLAG)      /* somerville scaling */
+         fac = amp0/sqrt(1.0 + amp*amp);
+
+      phs = pi*sfrand(seed);
+
+      fac1 = sqrt(s0[ip].re*s0[ip].re + s0[ip].im*s0[ip].im);
+
+      phs1 = 0.5*pi;
+      if(s0[ip].re != 0.0)
+         {
+         phs1 = atan(s0[ip].im/s0[ip].re);
+         if(s0[ip].re < 0.0)
+            phs1 = phs1 + pi;
+         }
+      else if(s0[ip].im < 0.0)
+         phs1 = -0.5*pi;
+
+      while(phs1 > pi)
+         phs1 = phs1 - pi;
+      while(phs1 < -pi)
+         phs1 = phs1 + pi;
+
+      k2 = (kx*kx + ky*ky)*invkc2;
+      wtD = exp(-xp*log(1.0 + k2));
+      wtS = 1.0 - wtD;
+
+      s0[ip].re = wtS*fac*cos(phs) + wtD*fac1*cos(phs1);
+      s0[ip].im = wtS*fac*sin(phs) + wtD*fac1*sin(phs1);
+
+/*
+
+   OLD STUFF that I tried FOLLOWS from HERE
+
+*/
+
+/*
+   Do not alter phase of lowest (k=0) and 2nd lowest (k=dk) wavenumbers
+   so average slip and edge taper are not significantly modified
+      if(i > 1 && j > 1)
+*/
+
+/* 
+   Do not alter phase of lowest (k=0) wavenumbers and use average of
+   random and determinstic phase for 2nd lowest (k=dk)
+   so average slip and edge taper are not significantly modified
+*/
+
+/*
+      if(i > 1 && j > 1)
+         {
+         s0[ip].re = fac*cos(phs);
+         s0[ip].im = fac*sin(phs);
+	 }
+      else if((i == 1 && j > 0) || (i > 0 && j == 1))
+         {
+	 if(i == 1)
+	    wtS = sqrt(ky*ky*invkym2);
+	 if(j == 1)
+	    wtS = sqrt(kx*kx*invkxm2);
+
+	 if(wtS < 0.5)
+	    wtS = 0.5;
+
+	 wtD = 1.0 - wtS;
+
+	 fac1 = sqrt(s0[ip].re*s0[ip].re + s0[ip].im*s0[ip].im);
+
+	 phs1 = 0.5*pi;
+	 if(s0[ip].re != 0.0)
+	    {
+	    phs1 = atan(s0[ip].im/s0[ip].re);
+	    if(s0[ip].re < 0.0)
+	       phs1 = phs1 + pi;
+	    }
+	 else if(s0[ip].im < 0.0)
+	    phs1 = -0.5*pi;
+
+         while(phs1 > pi)
+            phs1 = phs1 - pi;
+         while(phs1 < -pi)
+            phs1 = phs1 + pi;
+
+         s0[ip].re = wtS*fac*cos(phs) + wtD*fac1*cos(phs1);
+         s0[ip].im = wtS*fac*sin(phs) + wtD*fac1*sin(phs1);
+	 }
+*/
+      }
+   }
+
+/* 
+   Enforce Hermitian symmetry to make slip real valued
+*/
+
+for(j=1;j<=(ny0-1)/2;j++)
+   {
+   s0[(ny0-j)*nx0].re = s0[j*nx0].re;
+   s0[(ny0-j)*nx0].im = -s0[j*nx0].im;
+   }
+
+for(i=1;i<=(nx0-1)/2;i++)
+   {
+   s0[nx0-i].re = s0[i].re;
+   s0[nx0-i].im = -s0[i].im;
+   }
+
+for(j=1;j<=ny0/2;j++)
+   {
+   for(i=1;i<=nx0/2;i++)
+      {
+      s0[(nx0-i)+(ny0-j)*nx0].re = s0[i+j*nx0].re;
+      s0[(nx0-i)+(ny0-j)*nx0].im = -s0[i+j*nx0].im;
+
+      s0[i+(ny0-j)*nx0].re = s0[(nx0-i)+j*nx0].re;
+      s0[i+(ny0-j)*nx0].im = -s0[(nx0-i)+j*nx0].im;
+      }
+   }
+}
+
+void fft2d(struct complex *xc,int n1,int n2,int isgn,float *d1,float *d2)
+{
+int i, j, ip;
+float *space;
+struct complex *xtc;
+float normf;
+
+normf = (*d1)*(*d2);
+
+space = (float *) check_malloc (2*(n1+n2)*sizeof(float));
+
+for(j=0;j<n2;j++)
+   fourg_(xc+j*n1,&n1,&isgn,space);
+
+xtc = (struct complex *) check_malloc (n2*sizeof(struct complex));
+
+for(i=0;i<n1;i++)
+   {
+   for(j=0;j<n2;j++)
+      {
+      ip = i + j*n1;
+
+      xtc[j].re = xc[ip].re;
+      xtc[j].im = xc[ip].im;
+      }
+
+   fourg_(xtc,&n2,&isgn,space);
+
+   for(j=0;j<n2;j++)
+      {
+      ip = i + j*n1;
+
+      xc[ip].re = normf*xtc[j].re;
+      xc[ip].im = normf*xtc[j].im;
+      }
+   }
+
+free(space);
+free(xtc);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/spec-s0000
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/spec-s0000	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/spec-s0000	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,25 @@
+  0.00000e+00   0.00000e+00  0.00000e+00  0.00000e+00
+  3.12500e-02   0.00000e+00 -9.07180e-01  6.02984e+01
+  6.25000e-02   0.00000e+00 -4.77612e-01 -7.87496e+01
+  9.37500e-02   0.00000e+00 -3.10210e-01  5.58469e+01
+  1.25000e-01   0.00000e+00 -2.18629e-01  4.93999e+01
+  0.00000e+00   3.12500e-02 -8.99783e-01 -4.05948e+01
+  3.12500e-02   3.12500e-02 -7.46279e-01 -8.80999e+01
+  6.25000e-02   3.12500e-02 -4.34080e-01 -5.07044e+01
+  9.37500e-02   3.12500e-02 -3.18465e-01 -5.61412e+01
+  1.25000e-01   3.12500e-02 -1.59758e-01  7.41615e+01
+  0.00000e+00   6.25000e-02 -5.33286e-01 -5.31134e+00
+  3.12500e-02   6.25000e-02 -3.33786e-01 -7.30556e+01
+  6.25000e-02   6.25000e-02 -3.56633e-01 -1.42272e+01
+  9.37500e-02   6.25000e-02 -1.67545e-01  3.33741e-01
+  1.25000e-01   6.25000e-02 -1.46947e-02  3.54207e+01
+  0.00000e+00   9.37500e-02 -3.32322e-01 -9.22558e+00
+  3.12500e-02   9.37500e-02 -2.99540e-01 -5.61743e+01
+  6.25000e-02   9.37500e-02 -2.67565e-01 -2.26523e+01
+  9.37500e-02   9.37500e-02 -2.77285e-01  6.54237e+01
+  1.25000e-01   9.37500e-02 -5.43442e-02  7.06984e+01
+  0.00000e+00   1.25000e-01 -2.91847e-01  2.17233e+01
+  3.12500e-02   1.25000e-01 -7.15182e-02  4.53739e+01
+  6.25000e-02   1.25000e-01 -9.25299e-02  6.92534e+01
+  9.37500e-02   1.25000e-01 -9.00383e-02 -1.49679e+00
+  1.25000e-01   1.25000e-01  9.44937e-02  3.85367e+00

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/spec-s_avg
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/spec-s_avg	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/spec-s_avg	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,25 @@
+  0.00000e+00   0.00000e+00  0.00000e+00
+  3.12500e-02   0.00000e+00 -9.07180e-01
+  6.25000e-02   0.00000e+00 -4.77612e-01
+  9.37500e-02   0.00000e+00 -3.10210e-01
+  1.25000e-01   0.00000e+00 -2.18629e-01
+  0.00000e+00   3.12500e-02 -8.99783e-01
+  3.12500e-02   3.12500e-02 -7.46279e-01
+  6.25000e-02   3.12500e-02 -4.34080e-01
+  9.37500e-02   3.12500e-02 -3.18465e-01
+  1.25000e-01   3.12500e-02 -1.59758e-01
+  0.00000e+00   6.25000e-02 -5.33286e-01
+  3.12500e-02   6.25000e-02 -3.33786e-01
+  6.25000e-02   6.25000e-02 -3.56633e-01
+  9.37500e-02   6.25000e-02 -1.67545e-01
+  1.25000e-01   6.25000e-02 -1.46947e-02
+  0.00000e+00   9.37500e-02 -3.32322e-01
+  3.12500e-02   9.37500e-02 -2.99540e-01
+  6.25000e-02   9.37500e-02 -2.67565e-01
+  9.37500e-02   9.37500e-02 -2.77285e-01
+  1.25000e-01   9.37500e-02 -5.43442e-02
+  0.00000e+00   1.25000e-01 -2.91847e-01
+  3.12500e-02   1.25000e-01 -7.15182e-02
+  6.25000e-02   1.25000e-01 -9.25299e-02
+  9.37500e-02   1.25000e-01 -9.00383e-02
+  1.25000e-01   1.25000e-01  9.44937e-02

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/srf_subs.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/srf_subs.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/srf_subs.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,908 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+void init_plane_srf(struct standrupformat *srf,struct generic_slip *gslip,float *elon,float *elat,int nx,int ny,float *fl,float *fw,float *dx,float *dy,float *stk,float *dip,float *dtop,float *sh,float *dh)
+{
+struct srf_prectsegments *prseg_ptr;
+float avglon, avglat, dmin, dold, se, sn;
+int ig, iseg, nseg, nc, i, ip;
+struct slippars *spar, *spar2;
+
+float rperd = 0.017453293;
+
+sprintf(srf[0].type,"PLANE");
+
+if(gslip->np > 0)
+   {
+   spar = gslip->spar;
+   spar2 = (struct slippars *)check_malloc(gslip->np*sizeof(struct slippars));
+
+   nseg = 0;
+   for(i=0;i<gslip->np;i++)
+      {
+      if(spar[i].segno > nseg)
+         nseg = spar[i].segno;
+      }
+   nseg++;
+
+   srf[0].srf_prect.nseg = nseg;
+   srf[0].srf_prect.prectseg = (struct srf_prectsegments *)check_malloc(srf[0].srf_prect.nseg*sizeof(struct srf_prectsegments));
+
+   prseg_ptr = srf[0].srf_prect.prectseg;
+
+   nc = 0; 
+   for(i=0;i<nseg;i++)
+      {
+      avglon = 0.0; 
+      avglat = 0.0; 
+      prseg_ptr[i].stk = 0.0;
+      prseg_ptr[i].dip = 0.0;
+      prseg_ptr[i].dlen = 0.0;
+      prseg_ptr[i].dwid = 0.0;
+      iseg = 0;
+      dold = -1;
+      prseg_ptr[i].nstk = 0;
+      prseg_ptr[i].ndip = 0;
+      for(ip=0;ip<gslip->np;ip++)
+         {
+         if(spar[ip].segno == i)
+            {
+            spar2[nc].lon = spar[ip].lon;
+            spar2[nc].lat = spar[ip].lat;
+            spar2[nc].dep = spar[ip].dep;
+            spar2[nc].ds = spar[ip].ds;
+            spar2[nc].dw = spar[ip].dw;
+            spar2[nc].stk = spar[ip].stk;
+            spar2[nc].dip = spar[ip].dip;
+            spar2[nc].rake = spar[ip].rake;
+            spar2[nc].slip = spar[ip].slip;
+            spar2[nc].tinit = spar[ip].tinit;
+            spar2[nc].segno = spar[ip].segno;
+
+            if(iseg == 0)
+               dmin = spar[ip].dep;
+
+            if(spar[ip].dep == dmin)
+               {
+               avglon = avglon + spar[ip].lon;
+               avglat = avglat + spar[ip].lat;
+               prseg_ptr[i].nstk++;
+               }
+
+            if(spar[ip].dep != dold)
+               {
+               dold = spar[ip].dep;
+               prseg_ptr[i].ndip++;
+               }
+
+            prseg_ptr[i].dlen = prseg_ptr[i].dlen + spar[ip].ds;
+            prseg_ptr[i].dwid = prseg_ptr[i].dwid + spar[ip].dw;
+
+            nc++;
+            iseg++;
+
+            if(iseg == 1)
+               {
+               prseg_ptr[i].stk = spar[ip].stk;
+               prseg_ptr[i].dip = spar[ip].dip;
+               }
+            else
+               {
+               if(spar[ip].stk > prseg_ptr[i].stk/(float)(iseg) + 90.0)
+                  {
+                  prseg_ptr[i].stk = prseg_ptr[i].stk + spar[ip].stk - 180.0;
+                  prseg_ptr[i].dip = prseg_ptr[i].dip + 180.0 - spar[ip].dip;
+                  }
+               else if(spar[ip].stk < prseg_ptr[i].stk/(float)(iseg) - 90.0)
+                  {
+                  prseg_ptr[i].stk = prseg_ptr[i].stk + spar[ip].stk + 180.0;
+                  prseg_ptr[i].dip = prseg_ptr[i].dip + 180.0 - spar[ip].dip;
+                  }
+               else
+                  {
+                  prseg_ptr[i].stk = prseg_ptr[i].stk + spar[ip].stk;
+                  prseg_ptr[i].dip = prseg_ptr[i].dip + spar[ip].dip;
+                  }
+               }
+            }
+         }
+
+      prseg_ptr[i].stk = prseg_ptr[i].stk/(float)(iseg);
+      prseg_ptr[i].dip = prseg_ptr[i].dip/(float)(iseg);
+
+      if(prseg_ptr[i].dip > 90.0)
+         {
+         prseg_ptr[i].dip = 180.0 - prseg_ptr[i].dip;
+         prseg_ptr[i].stk = prseg_ptr[i].stk - 180.0;
+         }
+
+      while(prseg_ptr[i].stk < 0.0)
+         prseg_ptr[i].stk = prseg_ptr[i].stk + 360.0;
+      while(prseg_ptr[i].stk >= 360.0)
+         prseg_ptr[i].stk = prseg_ptr[i].stk - 360.0;
+
+      prseg_ptr[i].dlen = prseg_ptr[i].dlen/(float)(iseg);
+      prseg_ptr[i].dwid = prseg_ptr[i].dwid/(float)(iseg);
+
+      prseg_ptr[i].flen = prseg_ptr[i].nstk*prseg_ptr[i].dlen;
+      prseg_ptr[i].fwid = prseg_ptr[i].ndip*prseg_ptr[i].dwid;
+
+      prseg_ptr[i].dtop = dmin - 0.5*prseg_ptr[i].dwid*sin(rperd*prseg_ptr[i].dip);
+      if(prseg_ptr[i].dtop < 0.0)
+         prseg_ptr[i].dtop = 0.0;
+
+      avglon = avglon/(float)(prseg_ptr[i].nstk);
+      avglat = avglat/(float)(prseg_ptr[i].nstk);
+      se = -prseg_ptr[i].dwid*sin(rperd*prseg_ptr[i].dip)*cos(rperd*prseg_ptr[i].stk);
+      sn = prseg_ptr[i].dwid*sin(rperd*prseg_ptr[i].dip)*sin(rperd*prseg_ptr[i].stk);
+
+      set_ll(&avglon,&avglat,&prseg_ptr[i].elon,&prseg_ptr[i].elat,&sn,&se);
+
+      prseg_ptr[i].shyp = -999.9;
+      prseg_ptr[i].dhyp = -999.9;
+
+      fprintf(stderr,"%3d: %11.5f %11.5f %2d %2d %10.4f %10.4f %.1f %.1f %10.4f\n",i,prseg_ptr[i].elon,prseg_ptr[i].elat,prseg_ptr[i].nstk,prseg_ptr[i].ndip,prseg_ptr[i].flen,prseg_ptr[i].fwid,prseg_ptr[i].stk,prseg_ptr[i].dip,prseg_ptr[i].dtop);
+      }
+
+/*
+   for(ip=0;ip<gslip->np;ip++)
+      {
+      spar[ip].lon = spar2[ip].lon;
+      spar[ip].lat = spar2[ip].lat;
+      spar[ip].dep = spar2[ip].dep;
+      spar[ip].ds = spar2[ip].ds;
+      spar[ip].dw = spar2[ip].dw;
+      spar[ip].stk = spar2[ip].stk;
+      spar[ip].dip = spar2[ip].dip;
+      spar[ip].rake = spar2[ip].rake;
+      spar[ip].slip = spar2[ip].slip;
+      spar[ip].tinit = spar2[ip].tinit;
+      spar[ip].segno = spar2[ip].segno;
+      }
+*/
+
+   free(spar2);
+   }
+else
+   {
+   srf[0].srf_prect.nseg = 1;
+   srf[0].srf_prect.prectseg = (struct srf_prectsegments *)check_malloc(srf[0].srf_prect.nseg*sizeof(struct srf_prectsegments));
+   prseg_ptr = srf[0].srf_prect.prectseg;
+
+   prseg_ptr[0].elon = *elon;
+   prseg_ptr[0].elat = *elat;
+   prseg_ptr[0].nstk = nx;
+   prseg_ptr[0].ndip = ny;
+   prseg_ptr[0].flen = *fl;
+   prseg_ptr[0].fwid = *fw;
+   prseg_ptr[0].dlen = *dx;
+   prseg_ptr[0].dwid = *dy;
+   prseg_ptr[0].stk = *stk;
+   prseg_ptr[0].dip = *dip;
+   prseg_ptr[0].dtop = *dtop;
+   prseg_ptr[0].shyp = *sh;
+   prseg_ptr[0].dhyp = *dh;
+   }
+
+srf[0].srf_apnts.np = 0;
+for(ig=0;ig<srf[0].srf_prect.nseg;ig++)
+   srf[0].srf_apnts.np = srf[0].srf_apnts.np + (prseg_ptr[ig].nstk)*(prseg_ptr[ig].ndip);
+
+srf[0].srf_apnts.apntvals = (struct srf_apointvalues *)check_malloc((srf[0].srf_apnts.np)*sizeof(struct srf_apointvalues));
+}
+
+void load_slip_srf(struct standrupformat *srf,struct stfpar *spar,struct pointsource *ps)
+{
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+struct srf_prectsegments *prseg_ptr;
+float area;
+float *stf;
+int i, j, ip, ip0, iseg, nseg, ioff, noff, ntot;
+
+float dmin = 4.0;
+float dmax = 6.0;
+float rtfac, tzero;
+float rtfac0 = 1.0;
+
+float alpha = 0.1;      /* 1st triangle has pulse width = 2*alpha*trise */
+float betadeep = 0.2;       /* 2nd triangle has amplitude = beta*A (z0>dmax)*/
+float betashal = 0.5;       /* 2nd triangle has amplitude = beta*A (z0<dmin)*/
+float beta, dbdd;
+
+dbdd = (betadeep - betashal)/(dmax-dmin);
+
+apnts_ptr = &(srf->srf_apnts);
+apval_ptr = apnts_ptr->apntvals;
+
+nseg = srf[0].srf_prect.nseg;
+prseg_ptr = srf[0].srf_prect.prectseg;
+
+ntot = 0;
+for(iseg=0;iseg<nseg;iseg++)
+   ntot = ntot + prseg_ptr[iseg].nstk;
+
+ioff = 0;
+noff = 0;
+for(iseg=0;iseg<nseg;iseg++)
+   {
+   for(j=0;j<prseg_ptr[iseg].ndip;j++)
+      {
+      for(i=0;i<prseg_ptr[iseg].nstk;i++)
+         {
+	 ip = noff + i + j*prseg_ptr[iseg].nstk;
+	 ip0 = i + ioff + j*ntot;
+
+         apval_ptr[ip].stf1 = (float *)check_malloc(spar->nt*sizeof(float));
+         stf = apval_ptr[ip].stf1;
+
+         apval_ptr[ip].dt = spar->dt;
+         if(ps[ip0].slip > MINSLIP)
+	    {
+            if(ps[ip0].dep >= dmax)
+               rtfac = 1.0;
+            else if(ps[ip0].dep < dmax && ps[ip0].dep > dmin)
+               rtfac = 1.0 + rtfac0*(dmax-(ps[ip0].dep))/(dmax-dmin);
+            else
+               rtfac = 1.0 + rtfac0;
+
+            if(strcmp(spar->stype,"brune") == 0)
+               {
+               tzero = 0.1*exp(-1.0)*sqrt(ps[ip0].slip)/(1.2); /* assume slip in cm */     
+               tzero = tzero*rtfac;
+
+               apval_ptr[ip].nt1 = gen_brune_stf(&(ps[ip0].slip),&tzero,stf,spar->nt,&spar->dt);
+               }
+	    else if(strcmp(spar->stype,"urs") == 0)
+               {
+	       tzero = rtfac*spar->trise;
+
+               apval_ptr[ip].nt1 = gen_2tri_stf(&(ps[ip0].slip),&tzero,stf,spar->nt,&spar->dt,&ps[ip0].dep);
+               }
+            else if(strcmp(spar->stype,"ucsb") == 0)
+               {
+               tzero = rtfac*spar->trise;
+
+               apval_ptr[ip].nt1 = gen_ucsb_stf(&(ps[ip0].slip),&tzero,stf,spar->nt,&spar->dt);
+               }
+	    }
+         else
+            apval_ptr[ip].nt1 = 0;
+
+         if(apval_ptr[ip].nt1)
+            apval_ptr[ip].stf1 = (float *)check_realloc(apval_ptr[ip].stf1,(apval_ptr[ip].nt1)*sizeof(float));
+         else
+            {
+            free(apval_ptr[ip].stf1);
+            apval_ptr[ip].stf1 = NULL;
+            }
+
+         apval_ptr[ip].lon = ps[ip0].lon;
+         apval_ptr[ip].lat = ps[ip0].lat;
+         apval_ptr[ip].dep = ps[ip0].dep;
+         apval_ptr[ip].stk = ps[ip0].stk;
+         apval_ptr[ip].dip = ps[ip0].dip;
+         apval_ptr[ip].area = ps[ip0].area;
+         apval_ptr[ip].rake = ps[ip0].rak;
+         apval_ptr[ip].slip1 = ps[ip0].slip;
+
+         apval_ptr[ip].slip2 = 0.0;
+         apval_ptr[ip].nt2 = 0;
+         apval_ptr[ip].stf2 = NULL;
+         apval_ptr[ip].slip3 = 0.0;
+         apval_ptr[ip].nt3 = 0;
+         apval_ptr[ip].stf3 = NULL;
+         }
+      }
+   ioff = ioff + prseg_ptr[iseg].nstk;
+   noff = noff + prseg_ptr[iseg].nstk*prseg_ptr[iseg].ndip;
+   }
+}
+
+void load_rupt_srf(struct standrupformat *srf,struct pointsource *ps,float *sh,float *dh)
+{
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+struct srf_prectsegments *prseg_ptr;
+int i, j, ip, ip0, iseg, nseg, ioff, noff, ntot;
+
+(srf->srf_prect).prectseg[0].shyp = *sh;
+(srf->srf_prect).prectseg[0].dhyp = *dh;
+
+apnts_ptr = &(srf->srf_apnts);
+apval_ptr = apnts_ptr->apntvals;
+
+nseg = srf[0].srf_prect.nseg;
+prseg_ptr = srf[0].srf_prect.prectseg;
+
+ntot = 0;
+for(iseg=0;iseg<nseg;iseg++)
+   ntot = ntot + prseg_ptr[iseg].nstk;
+
+ioff = 0;
+noff = 0;
+for(iseg=0;iseg<nseg;iseg++)
+   {
+   for(j=0;j<prseg_ptr[iseg].ndip;j++)
+      {
+      for(i=0;i<prseg_ptr[iseg].nstk;i++)
+         {
+	 ip = noff + i + j*prseg_ptr[iseg].nstk;
+	 ip0 = i + ioff + j*ntot;
+
+         apval_ptr[ip].tinit = ps[ip0].rupt;
+         }
+      }
+   ioff = ioff + prseg_ptr[iseg].nstk;
+   noff = noff + prseg_ptr[iseg].nstk*prseg_ptr[iseg].ndip;
+   }
+}
+
+void write2gsf(struct generic_slip *gslip,struct pointsource *ps,char *ifile,char *ofile)
+{
+FILE *fpr, *fpw, *fopfile();
+int ip;
+char str[1024];
+
+if(strcmp(ofile,"stdout") == 0)
+   fpw = stdout;
+else
+   fpw = fopfile(ofile,"w");
+
+fpr = fopfile(ifile,"r");
+fgets(str,1024,fpr);
+while(strncmp(str,"#",1) == 0)
+   {
+   fprintf(fpw,"%s",str);
+   fgets(str,1024,fpr);
+   } 
+fclose(fpr);
+   
+fprintf(fpw,"%d\n",gslip->np);
+      
+for(ip=0;ip<gslip->np;ip++)
+   {
+   fprintf(fpw,"%11.5f %11.5f %8.4f %8.4f %8.4f %6.1f %6.1f %6.1f %8.2f %8.3f %3d\n",
+                                                               gslip->spar[ip].lon,
+                                                               gslip->spar[ip].lat,
+                                                               gslip->spar[ip].dep,
+                                                               gslip->spar[ip].ds,
+                                                               gslip->spar[ip].dw,
+                                                               gslip->spar[ip].stk,
+                                                               gslip->spar[ip].dip,
+                                                               gslip->spar[ip].rake,
+                                                               ps[ip].slip,
+                                                               ps[ip].rupt,
+                                                               gslip->spar[ip].segno);
+   }
+fclose(fpw);
+}
+
+void write_srf(struct standrupformat *srf,char *file,int bflag)
+{
+FILE *fpw, *fopfile();
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+float area;
+float *stf;
+int i, j, k, nt6, it, ip, ig, ntot;
+
+char pword[32];
+int fdw;
+
+prect_ptr = &(srf->srf_prect);
+prseg_ptr = prect_ptr->prectseg;
+apnts_ptr = &(srf->srf_apnts);
+apval_ptr = apnts_ptr->apntvals;
+
+if(bflag)
+   {
+   if(strcmp(file,"stdout") == 0)
+      fdw = STDOUT_FILENO;
+   else
+      fdw = croptrfile(file);
+
+   rite(fdw,srf->version,sizeof(srf->version));
+
+   if(strcmp(srf->type,"PLANE") == 0)
+      {
+      rite(fdw,srf->type,sizeof(srf->type));
+      rite(fdw,&(prect_ptr->nseg),sizeof(prect_ptr->nseg));
+      rite(fdw,prseg_ptr,(prect_ptr->nseg)*sizeof(struct srf_prectsegments));
+      }
+
+   sprintf(pword,"POINTS");
+   rite(fdw,pword,sizeof(pword));
+   rite(fdw,&(apnts_ptr->np),sizeof(apnts_ptr->np));
+   for(i=0;i<apnts_ptr->np;i++)
+      {
+      rite(fdw,&(apval_ptr[i].lon),sizeof(float));
+      rite(fdw,&(apval_ptr[i].lat),sizeof(float));
+      rite(fdw,&(apval_ptr[i].dep),sizeof(float));
+      rite(fdw,&(apval_ptr[i].stk),sizeof(float));
+      rite(fdw,&(apval_ptr[i].dip),sizeof(float));
+      rite(fdw,&(apval_ptr[i].area),sizeof(float));
+      rite(fdw,&(apval_ptr[i].tinit),sizeof(float));
+      rite(fdw,&(apval_ptr[i].dt),sizeof(float));
+      rite(fdw,&(apval_ptr[i].rake),sizeof(float));
+      rite(fdw,&(apval_ptr[i].slip1),sizeof(float));
+      rite(fdw,&(apval_ptr[i].nt1),sizeof(int));
+      rite(fdw,&(apval_ptr[i].slip2),sizeof(float));
+      rite(fdw,&(apval_ptr[i].nt2),sizeof(int));
+      rite(fdw,&(apval_ptr[i].slip3),sizeof(float));
+      rite(fdw,&(apval_ptr[i].nt3),sizeof(int));
+
+      rite(fdw,apval_ptr[i].stf1,(apval_ptr[i].nt1)*sizeof(float));
+      rite(fdw,apval_ptr[i].stf2,(apval_ptr[i].nt2)*sizeof(float));
+      rite(fdw,apval_ptr[i].stf3,(apval_ptr[i].nt3)*sizeof(float));
+      }
+   close(fdw);
+   }
+else
+   {
+   if(strcmp(file,"stdout") == 0)
+      fpw = stdout;
+   else
+      fpw = fopfile(file,"w");
+
+   fprintf(fpw,"%s\n",srf->version);
+
+   if(strcmp(srf->type,"PLANE") == 0)
+      {
+      fprintf(fpw,"%s %d\n",srf->type,prect_ptr->nseg);
+      for(ig=0;ig<prect_ptr->nseg;ig++)
+         {
+         fprintf(fpw,"%10.4f %9.4f %5d %5d %8.2f %8.2f\n",prseg_ptr[ig].elon,
+                                                        prseg_ptr[ig].elat,
+                                                        prseg_ptr[ig].nstk,
+                                                        prseg_ptr[ig].ndip,
+                                                        prseg_ptr[ig].flen,
+                                                        prseg_ptr[ig].fwid);
+         fprintf(fpw,"%4.0f %4.0f %8.2f %8.2f %8.2f\n",prseg_ptr[ig].stk,
+                                                    prseg_ptr[ig].dip,
+                                                    prseg_ptr[ig].dtop,
+                                                    prseg_ptr[ig].shyp,
+                                                    prseg_ptr[ig].dhyp);
+         }
+      }
+
+   fprintf(fpw,"POINTS %d\n",apnts_ptr->np);
+   for(i=0;i<apnts_ptr->np;i++)
+      {
+      fprintf(fpw,"%10.4f %9.4f %9.4f %4.0f %4.0f %12.5e %10.4f %12.5e\n",
+                                              apval_ptr[i].lon,
+                                              apval_ptr[i].lat,
+                                              apval_ptr[i].dep,
+                                              apval_ptr[i].stk,
+                                              apval_ptr[i].dip,
+                                              apval_ptr[i].area,
+                                              apval_ptr[i].tinit,
+                                              apval_ptr[i].dt);
+      fprintf(fpw,"%4.0f %8.2f %6d %8.2f %6d %8.2f %6d\n",
+                                              apval_ptr[i].rake,
+                                              apval_ptr[i].slip1,
+                                              apval_ptr[i].nt1,
+                                              apval_ptr[i].slip2,
+                                              apval_ptr[i].nt2,
+                                              apval_ptr[i].slip3,
+                                              apval_ptr[i].nt3);
+
+      stf = apval_ptr[i].stf1;
+      nt6 = (apval_ptr[i].nt1)/6;
+      for(k=0;k<nt6;k++)
+         {
+         for(j=0;j<6;j++)
+            {
+            it = 6*k + j;
+            fprintf(fpw,"%13.5e",stf[it]);
+            }
+         fprintf(fpw,"\n");
+         }
+
+      if(6*nt6 != (apval_ptr[i].nt1))
+         {
+         for(j=6*nt6;j<(apval_ptr[i].nt1);j++)
+            fprintf(fpw,"%13.5e",stf[j]);
+
+         fprintf(fpw,"\n");
+         }
+
+      stf = apval_ptr[i].stf2;
+      nt6 = (apval_ptr[i].nt2)/6;
+      for(k=0;k<nt6;k++)
+         {
+         for(j=0;j<6;j++)
+            {
+            it = 6*k + j;
+            fprintf(fpw,"%13.5e",stf[it]);
+            }
+         fprintf(fpw,"\n");
+         }
+
+      if(6*nt6 != (apval_ptr[i].nt2))
+         {
+         for(j=6*nt6;j<(apval_ptr[i].nt2);j++)
+            fprintf(fpw,"%13.5e",stf[j]);
+
+         fprintf(fpw,"\n");
+         }
+
+      stf = apval_ptr[i].stf3;
+      nt6 = (apval_ptr[i].nt3)/6;
+      for(k=0;k<nt6;k++)
+         {
+         for(j=0;j<6;j++)
+            {
+            it = 6*k + j;
+            fprintf(fpw,"%13.5e",stf[it]);
+            }
+         fprintf(fpw,"\n");
+         }
+
+      if(6*nt6 != (apval_ptr[i].nt3))
+         {
+         for(j=6*nt6;j<(apval_ptr[i].nt3);j++)
+            fprintf(fpw,"%13.5e",stf[j]);
+
+         fprintf(fpw,"\n");
+         }
+      }
+   fclose(fpw);
+   }
+}
+
+void free_srf_stf(struct standrupformat *srf)
+{
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+int i;
+
+apnts_ptr = &(srf->srf_apnts);
+apval_ptr = apnts_ptr->apntvals;
+
+for(i=0;i<apnts_ptr->np;i++)
+   {
+   free(apval_ptr[i].stf1);
+   free(apval_ptr[i].stf2);
+   free(apval_ptr[i].stf3);
+   }
+}
+
+void read_srf(struct standrupformat *srf,char *file,int bflag)
+{
+FILE *fpr, *fopfile();
+struct srf_prectsegments *prseg_ptr;
+struct srf_apointvalues *apval_ptr;
+char str[1024];
+
+float *stf;
+int i, j, k, nt6, it, ip, ig, ntot;
+
+char pword[32];
+int fdr;
+
+if(bflag)
+   {
+   if(strcmp(file,"stdin") == 0)
+      fdr = STDIN_FILENO;
+   else
+      fdr = opfile_ro(file);
+
+   reed(fdr,srf->version,sizeof(srf->version));
+
+   reed(fdr,pword,sizeof(pword));
+   if(strcmp(pword,"PLANE") == 0)
+      {
+      sprintf(srf->type,"PLANE");
+
+      reed(fdr,&(srf[0].srf_prect.nseg),sizeof(int));
+      srf[0].srf_prect.prectseg = (struct srf_prectsegments *)check_malloc(srf[0].srf_prect.nseg*sizeof(struct srf_prectsegments));
+      prseg_ptr = srf[0].srf_prect.prectseg;
+
+      reed(fdr,prseg_ptr,(srf[0].srf_prect.nseg)*sizeof(struct srf_prectsegments));
+      }
+
+   reed(fdr,pword,sizeof(pword));
+   if(strncmp(pword,"POINTS",6) == 0)
+      {
+      reed(fdr,&(srf[0].srf_apnts.np),sizeof(int));
+      srf[0].srf_apnts.apntvals = (struct srf_apointvalues *)check_malloc((srf[0].srf_apnts.np)*sizeof(struct srf_apointvalues));
+
+      apval_ptr = srf[0].srf_apnts.apntvals;
+
+      for(i=0;i<srf[0].srf_apnts.np;i++)
+         {
+         reed(fdr,&(apval_ptr[i].lon),sizeof(float));
+         reed(fdr,&(apval_ptr[i].lat),sizeof(float));
+         reed(fdr,&(apval_ptr[i].dep),sizeof(float));
+         reed(fdr,&(apval_ptr[i].stk),sizeof(float));
+         reed(fdr,&(apval_ptr[i].dip),sizeof(float));
+         reed(fdr,&(apval_ptr[i].area),sizeof(float));
+         reed(fdr,&(apval_ptr[i].tinit),sizeof(float));
+         reed(fdr,&(apval_ptr[i].dt),sizeof(float));
+         reed(fdr,&(apval_ptr[i].rake),sizeof(float));
+         reed(fdr,&(apval_ptr[i].slip1),sizeof(float));
+         reed(fdr,&(apval_ptr[i].nt1),sizeof(int));
+         reed(fdr,&(apval_ptr[i].slip2),sizeof(float));
+         reed(fdr,&(apval_ptr[i].nt2),sizeof(int));
+         reed(fdr,&(apval_ptr[i].slip3),sizeof(float));
+         reed(fdr,&(apval_ptr[i].nt3),sizeof(int));
+
+         apval_ptr[i].stf1 = (float *)check_malloc((apval_ptr[i].nt1)*sizeof(float));
+         apval_ptr[i].stf2 = (float *)check_malloc((apval_ptr[i].nt2)*sizeof(float));
+         apval_ptr[i].stf3 = (float *)check_malloc((apval_ptr[i].nt3)*sizeof(float));
+
+         reed(fdr,apval_ptr[i].stf1,(apval_ptr[i].nt1)*sizeof(float));
+         reed(fdr,apval_ptr[i].stf2,(apval_ptr[i].nt2)*sizeof(float));
+         reed(fdr,apval_ptr[i].stf3,(apval_ptr[i].nt3)*sizeof(float));
+         }
+      }
+   close(fdr);
+   }
+else
+   {
+   if(strcmp(file,"stdin") == 0)
+      fpr = stdin;
+   else
+      fpr = fopfile(file,"r");
+
+   fgets(str,1024,fpr);
+   sscanf(str,"%s",&(srf[0].version));
+
+   fgets(str,1024,fpr);
+   if(strncmp(str,"PLANE",5) == 0)
+      {
+      sscanf(str,"%s %d",srf[0].type,&(srf[0].srf_prect.nseg));
+
+      srf[0].srf_prect.prectseg = (struct srf_prectsegments *)check_malloc(srf[0].srf_prect.nseg*sizeof(struct srf_prectsegments));
+      prseg_ptr = srf[0].srf_prect.prectseg;
+
+      for(ig=0;ig<srf[0].srf_prect.nseg;ig++)
+         {
+         fgets(str,1024,fpr);
+         sscanf(str,"%f %f %d %d %f %f",&(prseg_ptr[ig].elon),
+                                     &(prseg_ptr[ig].elat),
+                                     &(prseg_ptr[ig].nstk),
+                                     &(prseg_ptr[ig].ndip),
+                                     &(prseg_ptr[ig].flen),
+                                     &(prseg_ptr[ig].fwid));
+         fgets(str,1024,fpr);
+         sscanf(str,"%f %f %f %f %f",&(prseg_ptr[ig].stk),
+                                  &(prseg_ptr[ig].dip),
+                                  &(prseg_ptr[ig].dtop),
+                                  &(prseg_ptr[ig].shyp),
+                                  &(prseg_ptr[ig].dhyp));
+         }
+
+      fgets(str,1024,fpr);
+      }
+
+   if(strncmp(str,"POINTS",6) == 0)
+      {
+      sscanf(str,"%*s %d",&(srf[0].srf_apnts.np));
+      srf[0].srf_apnts.apntvals = (struct srf_apointvalues *)check_malloc((srf[0].srf_apnts.np)*sizeof(struct srf_apointvalues));
+
+      apval_ptr = srf[0].srf_apnts.apntvals;
+
+      for(i=0;i<srf[0].srf_apnts.np;i++)
+         {
+         fgets(str,1024,fpr);
+         sscanf(str,"%f %f %f %f %f %f %f %f",&(apval_ptr[i].lon),
+                                           &(apval_ptr[i].lat),
+                                           &(apval_ptr[i].dep),
+                                           &(apval_ptr[i].stk),
+                                           &(apval_ptr[i].dip),
+                                           &(apval_ptr[i].area),
+                                           &(apval_ptr[i].tinit),
+                                           &(apval_ptr[i].dt));
+         fgets(str,1024,fpr);
+         sscanf(str,"%f %f %d %f %d %f %d",&(apval_ptr[i].rake),
+                                        &(apval_ptr[i].slip1),
+                                        &(apval_ptr[i].nt1),
+                                        &(apval_ptr[i].slip2),
+                                        &(apval_ptr[i].nt2),
+                                        &(apval_ptr[i].slip3),
+                                        &(apval_ptr[i].nt3));
+
+         apval_ptr[i].stf1 = (float *)check_malloc((apval_ptr[i].nt1)*sizeof(float));
+         stf = apval_ptr[i].stf1;
+
+         for(it=0;it<(apval_ptr[i].nt1);it++)
+            fscanf(fpr,"%f",&stf[it]);
+
+         apval_ptr[i].stf2 = (float *)check_malloc((apval_ptr[i].nt2)*sizeof(float));
+         stf = apval_ptr[i].stf2;
+
+         for(it=0;it<(apval_ptr[i].nt2);it++)
+            fscanf(fpr,"%f",&stf[it]);
+
+         apval_ptr[i].stf3 = (float *)check_malloc((apval_ptr[i].nt3)*sizeof(float));
+         stf = apval_ptr[i].stf3;
+
+         for(it=0;it<(apval_ptr[i].nt3);it++)
+            fscanf(fpr,"%f",&stf[it]);
+
+         /* get rouge newline character */
+         if((apval_ptr[i].nt1) || (apval_ptr[i].nt2) || (apval_ptr[i].nt3))
+            fgets(str,1024,fpr);
+         }
+      }
+   fclose(fpr);
+   }
+}
+
+int gen_2tri_stf(float *slip,float *trise,float *stf,int nt,float *dt,float *z0)
+{
+int it, nstf;
+int ip, it0, it1, it2;
+float tr, amp, a0;
+float sum;
+float alpha = 0.1;      /* 1st triangle has pulse width = 2*alpha*trise */
+float betadeep = 0.2;       /* 2nd triangle has amplitude = beta*A (z0>dmax)*/
+float betashal = 0.5;       /* 2nd triangle has amplitude = beta*A (z0<dmin)*/
+float beta, dbdd;
+
+float dmin = 4.0;
+float dmax = 6.0;
+
+dbdd = (betadeep - betashal)/(dmax-dmin);
+
+if((*z0) >= dmax)
+   beta = betadeep;
+else if((*z0) < dmax && (*z0) > dmin)
+   beta = betadeep - (dmax-(*z0))*dbdd;
+else
+   beta = betashal;
+
+zapit(stf,nt);
+
+tr = (*trise);
+alpha = alpha*tr;
+
+it0 = (int)((alpha)/(*dt) + 0.5);
+if(it0 < 2)
+   it0 = 2;
+it1 = (int)((tr)/(*dt) + 0.5);
+if(it1 < 4)
+   it1 = 4;
+
+it2 = (2 - beta)*it0;
+
+a0 = 1.0;
+amp = a0/(float)(it0);
+
+for(it=0;it<it0;it++)
+   stf[it] = it*amp;
+
+for(it=it0;it<it2;it++)
+   stf[it] = (2*it0-it)*amp;
+
+amp = beta*a0/(float)(it1-it2);
+
+for(it=it2;it<it1;it++)
+   stf[it] = beta*a0 + (it2-it)*amp;
+
+nstf = nt-1;
+while(stf[nstf] == (float)(0.0) && nstf)
+   nstf--;
+
+if(nstf == 0)
+   return(0);
+
+if(nstf < nt-1)
+   nstf = nstf + 2;;
+
+sum = 0.0;
+for(it=0;it<nstf;it++)
+   sum = sum + (*dt)*stf[it];
+
+if(sum <= 0.0)
+   return(0);
+
+/* scale STF by slip */
+sum = (*slip)/sum;
+for(it=0;it<nstf;it++)
+   stf[it] = stf[it]*sum;
+
+return(nstf);
+}
+
+int gen_brune_stf(float *slip,float *t0,float *stf,int nt,float *dt)
+{
+int it, nstf;
+float t95, tend, sfac, tfac;
+float sum;
+
+zapit(stf,nt);
+
+t95 = 1.745*exp(1.0)*(*t0);
+tend = 3.0*t95;
+
+nstf = (int)((tend)/(*dt) + 0.5);
+if(nstf > nt)
+   nstf = nt;
+
+if(nstf == 0)
+   return(0);
+
+sfac = (*slip)/(*t0);
+tfac = (*dt)/(*t0);
+for(it=0;it<nstf;it++)
+   stf[it] = sfac*(it*tfac)*exp(-it*tfac);
+
+sum = 0.0;
+for(it=0;it<nstf;it++)
+   sum = sum + (*dt)*stf[it];
+
+if(sum <= 0.0)
+   return(0);
+
+return(nstf);
+}
+
+int gen_ucsb_stf(float *slip,float *t0,float *stf,int nt,float *dt)
+{
+int it, nstf;
+float tau, tau1, tau2, tau1x2, arg1, arg2;
+float sum, t, alpha;
+float pi = 3.141592654;
+
+zapit(stf,nt);
+
+tau = (*t0);
+tau1 = 0.13*tau;
+tau2 = tau - tau1;
+tau1x2 = 2.0*tau1;
+
+nstf = (int)((tau)/(*dt) + 0.5);
+if(nstf > nt)
+   nstf = nt;
+
+if(nstf == 0)
+   return(0);
+
+for(it=0;it<nstf;it++)
+   {
+   t = it*(*dt);
+
+   alpha = 0.0;
+   if(t < tau1)
+      {
+      arg1 = pi*t/tau1;
+      arg2 = 0.5*arg1;
+      alpha = 0.7 - 0.7*cos(arg1) + 0.6*sin(arg2);
+      }
+   else if(t < tau1x2)
+      {
+      arg1 = pi*t/tau1;
+      arg2 = pi*(t - tau1)/tau2;
+      alpha = 1.0 - 0.7*cos(arg1) + 0.3*cos(arg2);
+      }
+   else if(t < tau) 
+      {
+      arg1 = pi*(t - tau1)/tau2;
+      alpha = 0.3 + 0.3*cos(arg1);
+      }
+
+   stf[it] = alpha;
+   }
+
+sum = 0.0;
+for(it=0;it<nstf;it++)
+   sum = sum + (*dt)*stf[it];
+
+if(sum <= 0.0)
+   return(0);
+
+/* scale STF by slip */
+sum = (*slip)/sum;
+for(it=0;it<nstf;it++)
+   stf[it] = stf[it]*sum;
+
+return(nstf);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/structure.h
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/structure.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/GenRand/structure.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,118 @@
+struct complex
+   {
+   float re;
+   float im;
+   };
+
+struct velmodel
+   {
+   int nlay;
+   float *vp;
+   double *vs;    /* need double for ray tracing to get ruptime */
+   float *den;
+   float *th;
+   float *dep;
+   float *mu;     /* in CMS units */
+   double *invb2; /* need double for ray tracing to get ruptime */
+   };
+
+struct stfpar
+   {
+   int nt;
+   float dt;
+   float trise;
+   char stype[32];
+   };
+
+struct pointsource
+   {
+   float lon;
+   float lat;
+   float dep;
+   float stk;
+   float dip;
+   float rak;
+   float area;
+   float slip;
+   float rupt;
+   };
+
+struct srf_apointvalues
+   {
+   float lon;
+   float lat;
+   float dep;
+   float stk;
+   float dip;
+   float area;
+   float tinit;
+   float dt;
+   float rake;
+   float slip1;
+   int nt1;
+   float slip2;
+   int nt2;
+   float slip3;
+   int nt3;
+   float *stf1;
+   float *stf2;
+   float *stf3;
+   };
+
+struct srf_allpoints
+   {
+   int np;
+   struct srf_apointvalues *apntvals;
+   };
+
+struct srf_prectsegments
+   {
+   float elon;
+   float elat;
+   int nstk;
+   int ndip;
+   float flen;
+   float fwid;
+   float dlen;
+   float dwid;
+   float stk;
+   float dip;
+   float dtop;
+   float shyp;
+   float dhyp;
+   };
+
+struct srf_planerectangle
+   {
+   int nseg;
+   struct srf_prectsegments *prectseg;
+   };
+
+struct standrupformat
+   {
+   char version[32];
+   char type[32];
+   struct srf_planerectangle srf_prect;
+   struct srf_allpoints srf_apnts;
+   };
+
+struct slippars
+   {
+   float lon;
+   float lat;
+   float dep;
+   float ds;
+   float dw;
+   float stk;
+   float dip;
+   float rake;
+   float slip;
+   float tinit;
+   int segno;
+   };
+
+struct generic_slip
+   {
+   int np;
+   struct slippars *spar;
+   };

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/fourg.f
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/fourg.f	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/fourg.f	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,145 @@
+      subroutine fourg (data,n,isign,work)
+c     cooley-tukey fast fourier transform in usasi basic fortran.
+c     one-dimensional transform of complex data, arbitrary number of
+c     points.  n points can be transformed in time proportional to
+c     n*log(n) (for n non-prime), whereas other methods take n**2 time.
+c     furthermore, because fewer arithmetic operations are performed,
+c     less error is built up.  the transform done is--
+c     dimension data(n),transform(n),work(n)
+c     complex data,transform,work
+c     transform(k) = sum(data(j)*exp(isign*2*pi*i*(j-1)*(k-1)/n)),
+c     summed from j = 1 to n for all k from 1 to n.  the transform
+c     values are returned to data, replacing the input.  n may be any
+c     positive number, but it should be non-prime for speed.  isign =
+c     +1 or -1.  a -1 transform followed by a +1 one (or vice versa)
+c     returns n times the original data.  work is a one-dimensional
+c     complex array of length n used for working storage.
+c     running time is proportional to n * (sum of the prime factors of
+c     n).  for example, n = 1960, time is t0 * 1960 * (2+2+2+5+7+7).
+c     naive methods directly implementing the summation run in time
+c     proportional to n**2.  an upper bound for the rms relative error
+c     is 3 * 2**(-b) * sum(f**1.5), where b is the number of bits in
+c     the floating point fraction and the sum is over the prime
+c     factors of n.  written by norman brenner, mit lincoln laboratory,
+c     august 1968.  see--ieee transactions on audio and e
+c     (june 1967), special issue on the fast fourier transform.
+      dimension data(1), work(1), ifact(32)
+      twopi=6.283185307*float(isign)
+c     factor n into its prime factors, nfact in number.  for example,
+c     for n = 1960, nfact = 6 and ifact(if) = 2, 2, 2, 5, 7 and 7.
+      if=0
+      npart=n
+      do 50 id=1,n,2
+      idiv=id
+      if (id-1) 10,10,20
+ 10   idiv=2
+ 20   iquot=npart/idiv
+      if (npart-idiv*iquot) 40,30,40
+ 30   if=if+1
+      ifact(if)=idiv
+      npart=iquot
+
+      go to 20
+ 40   if (iquot-idiv) 60,60,50
+ 50   continue
+ 60   if (npart-1) 80,80,70
+ 70   if=if+1
+      ifact(if)=npart
+ 80   nfact=if
+c     shuffle the data array by reversing the digits of the index.
+c     replace data(i) by data(irev) for all i from 1 to n.  irev-1 is
+c     the integer whose digit representation in the multi-radix
+c     notation of factors ifact(if) is the reverse of the r
+c     of i-1.  for example, if all ifact(if) = 2, then for i-1 = 11001,
+c     irev-1 = 10011.  a work array of length n is needed.
+      ip0=2
+      ip3=ip0*n
+      iwork=1
+      i3rev=1
+      do 110 i3=1,ip3,ip0
+      work(iwork)=data(i3rev)
+      work(iwork+1)=data(i3rev+1)
+      ip2=ip3
+      do 100 if=1,nfact
+      ip1=ip2/ifact(if)
+      i3rev=i3rev+ip1
+      if (i3rev-ip2) 110,110,90
+ 90   i3rev=i3rev-ip2
+ 100  ip2=ip1
+ 110  iwork=iwork+ip0
+      iwork=1
+      do 120 i3=1,ip3,ip0
+      data(i3)=work(iwork)
+      data(i3+1)=work(iwork+1)
+ 120  iwork=iwork+ip0
+c     phase-shifted fourier transform of length ifact(if).
+c     iprod=ip1/ip0
+c     irem=n/(ifact(if)*iprod)
+c     dimension data(iprod,ifact(if),irem),work(ifact(if))
+c     complex data,work
+c     data(i1,j2,i3) = sum(data(i1,i2,i3) * w**(i2-1)), summed over
+c     i2 = 1 to ifact(if) for all i1 from 1 to iprod, j2 from 1 to
+
+c     ifact(if) and i3 from 1 to irem.
+c     w = exp(isign*2*pi*i*(i1-1+iprod*(j2-1))/(iprod*ifact(if))).
+      if=0
+      ip1=ip0
+ 130  if (ip1-ip3) 140,240,240
+ 140  if=if+1
+      ifcur=ifact(if)
+      ip2=ip1*ifcur
+      theta=twopi/float(ifcur)
+      sinth=sin(theta/2.)
+      rootr=-2.*sinth*sinth
+c     cos(theta)-1, for accuracy
+      rooti=sin(theta)
+      theta=twopi/float(ip2/ip0)
+      sinth=sin(theta/2.)
+      wstpr=-2.*sinth*sinth
+      wstpi=sin(theta)
+      wminr=1.
+      wmini=0.
+      do 230 i1=1,ip1,ip0
+      if (ifcur-2) 150,150,170
+ 150  do 160 i3=i1,ip3,ip2
+      j0=i3
+      j1=i3+ip1
+      tempr=wminr*data(j1)-wmini*data(j1+1)
+      tempi=wminr*data(j1+1)+wmini*data(j1)
+      data(j1)=data(j0)-tempr
+      data(j1+1)=data(j0+1)-tempi
+      data(j0)=data(j0)+tempr
+ 160  data(j0+1)=data(j0+1)+tempi
+      go to 220
+ 170  iwmax=ip0*ifcur
+      do 210 i3=i1,ip3,ip2
+      i2max=i3+ip2-ip1
+      wr=wminr
+      wi=wmini
+      do 200 iwork=1,iwmax,ip0
+      i2=i2max
+      sumr=data(i2)
+      sumi=data(i2+1)
+
+ 180  i2=i2-ip1
+      tempr=sumr
+      sumr=wr*sumr-wi*sumi+data(i2)
+      sumi=wr*sumi+wi*tempr+data(i2+1)
+      if (i2-i3) 190,190,180
+ 190  work(iwork)=sumr
+      work(iwork+1)=sumi
+      tempr=wr
+      wr=wr*rootr-wi*rooti+wr
+ 200  wi=tempr*rooti+wi*rootr+wi
+      iwork=1
+      do 210 i2=i3,i2max,ip1
+      data(i2)=work(iwork)
+      data(i2+1)=work(iwork+1)
+ 210  iwork=iwork+ip0
+ 220  tempr=wminr
+      wminr=wminr*wstpr-wmini*wstpi+wminr
+ 230  wmini=tempr*wstpi+wmini*wstpr+wmini
+      ip1=ip2
+      go to 130
+ 240  return
+      end

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/makefile
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/makefile	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/makefile	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,26 @@
+OBJS = fourg.o ../GenRand/ruptime.o
+
+GETPAR = ${HOME}/Getpar/getpar/lib
+
+LIBS = -lm ${GETPAR}/libget.a
+LDLIBS = ${OBJS} ${LIBS}
+
+#LF_FLAGS = -D_FILE_OFFSET_BITS=32
+#
+# use following for large file capability
+LF_FLAGS = -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
+
+UFLAGS = -O3
+
+CC = gcc
+
+CFLAGS = ${UFLAGS} ${LF_FLAGS}
+FFLAGS = ${UFLAGS} -ffixed-line-length-132
+
+##### make options
+
+resamp_slip : resamp_slip.o ${OBJS}
+	g77 -o resamp_slip resamp_slip.o ${LDLIBS}
+
+resamp_slip-flip : resamp_slip-flip.o ${OBJS}
+	g77 -o resamp_slip-flip resamp_slip-flip.o ${LDLIBS}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/resamp_slip-flip.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/resamp_slip-flip.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/resamp_slip-flip.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,1395 @@
+#include <errno.h>
+#include <fcntl.h>
+#include <math.h>
+#include <stdio.h>
+#include <unistd.h>
+#include <stdlib.h>
+
+#include <sys/file.h>
+#include <sys/procfs.h>
+#include <sys/resource.h>
+#include <sys/signal.h>
+#include <sys/stat.h>
+#include <sys/syscall.h>
+#include <sys/time.h>
+#include <sys/types.h>
+
+#include "../StandRupFormat/structure.h"
+
+#define MAXTOL 0.01
+#define         RPERD           0.017453293
+
+struct complex
+   {
+   float re;
+   float im;
+   };
+
+#ifndef STRUCT_VELMODEL
+#define STRUCT_VELMODEL
+
+struct velmodel
+   {
+   int nlay;
+   float *vp;
+   double *vs;    /* need double for ray tracing to get ruptime */
+   float *den;
+   float *th;
+   float *dep;
+   float *mu;     /* in CMS units */
+   double *invb2; /* need double for ray tracing to get ruptime */
+   };
+
+#endif
+
+void *check_malloc(int);
+FILE *fopfile(char*, char*);
+
+void fft2d(struct complex *, int, int, int,float *,float *);
+
+void resamp(struct complex *,int,int,struct complex *,int,int,float *,float *,float *,float *,long *,float *,float *);
+
+void resampOLD2(struct complex *,int,int,struct complex *,int,int,float *,float *,float *,float *,long *,float *,float *);
+
+void resampOLD(struct complex *,int,int,struct complex *,int,int,float *,float *,float *,float *,long *,float *,float *);
+
+void resample_slip(float *,int,int,float,float,float *,int,int,float,float);
+void smooth_slip(float *,int,int,float *);
+
+double frand(void);
+double Xsfrand(long *);
+double sfrand(long *);
+double gaus_rand(float *,float *,long *);
+
+void set_ll(float *,float *,float *,float *,float *,float *);
+
+main(int ac,char **av)
+{
+FILE *fpr, *fpw;
+struct complex *slip0, *slip1;
+struct complex *vrup0, *vrup1;
+float *rslip, flen, fwid, dx, dy, dx2, dy2, amp0, amp, lamp;
+float dkx, dky, kx, ky, xx, yy;
+float x0, y0, dd, hh, ee, nn, xlon, xlat;
+int nx, ny, nxfine, nyfine, nx2, ny2;
+int i, j, k, l, ip0, ipf, ip, i0, j0;
+char infile[256], slipfile[256], specfile[256], str[512];
+char lisafile[512], lhead0[512], lhead1[512], lhead2[512];
+
+float savg, smax, sf, *rt, rtmin, xrtmin, rupt;
+float tsfac = 0.0;
+float avg_vrup = 3.0;
+float avgvr;
+
+int gen_ruptime = 0;
+float rvfrac = 0.8;
+float shal_vrup = 0.8;
+float htol = 0.1;
+float shypo, dhypo, avgdip, dtop, dmin;
+struct velmodel vmod, rvmod;
+char velfile[128];
+double rayp, rupt_rad;
+
+double rperd = 0.017453293;
+
+int generic_slip = 0;
+char generic_slipfile[512];
+struct generic_slip gslip;
+struct slippars *spar;
+
+float xl = -1.0;
+float yl = -1.0;
+
+float *s1, *s2;
+int smooth = 0;
+int lisaformat = 0;
+int norm2one = 1;
+int npad = 0;
+int flip_at_surface = 0;
+int ny_in, ny_out;
+
+float mech[2], rake[2], *rake0, ss, ds;
+int nmech = 1;
+
+float scl, savg_in;
+int scale_avgslip = 1;
+
+float pi = 3.14159265;
+
+long seed = 0;
+long neg_seed = -99;
+
+float dxcorner = -1.0;
+float dycorner = -1.0;
+
+float fone = 1.0;
+
+float default_rake = 0.0;
+float set_rake = -999.0;
+float rand_rake_degs = 0.0;
+
+rake[0] = 0.0;
+rake[1] = 0.0;
+
+slipfile[0] = '\0';
+specfile[0] = '\0';
+lisafile[0] = '\0';
+generic_slipfile[0] = '\0';
+
+rtmin = -1.0e+15;
+xrtmin = 1.0e+15;
+
+setpar(ac,av);
+mstpar("infile","s",infile);
+getpar("slipfile","s",slipfile);
+getpar("specfile","s",specfile);
+mstpar("nxfine","d",&nxfine);
+mstpar("nyfine","d",&nyfine);
+getpar("xl","f",&xl);
+getpar("yl","f",&yl);
+getpar("dxcorner","f",&dxcorner);
+getpar("dycorner","f",&dycorner);
+getpar("seed","d",&seed);
+getpar("npad","d",&npad);
+getpar("smooth","d",&smooth);
+getpar("norm2one","d",&norm2one);
+getpar("flip_at_surface","d",&flip_at_surface);
+getpar("tsfac","f",&tsfac);
+getpar("rtmin","f",&rtmin);
+
+getpar("lisaformat","d",&lisaformat);
+getpar("generic_slip","d",&generic_slip);
+getpar("scale_avgslip","d",&scale_avgslip);
+
+if(generic_slip)
+   {
+   lisaformat = 0;
+   mstpar("flen","f",&flen);
+   mstpar("fwid","f",&fwid);
+   mstpar("nx","d",&nx);
+   mstpar("ny","d",&ny_in);
+   mstpar("generic_slipfile","s",generic_slipfile);
+
+   getpar("gen_ruptime","d",&gen_ruptime);
+   if(gen_ruptime)
+      {
+      mstpar("velfile","s",velfile);
+      mstpar("shypo","f",&shypo);
+      mstpar("dhypo","f",&dhypo);
+      getpar("rvfrac","f",&rvfrac);
+      getpar("shal_vrup","f",&shal_vrup);
+      }
+   else if(nxfine > 1 || nyfine > 1)
+      {
+      mstpar("shypo","f",&shypo);
+      mstpar("dhypo","f",&dhypo);
+      getpar("avg_vrup","f",&avg_vrup);
+      }
+
+   dx = flen/nx;
+   dy = fwid/ny_in;
+   }
+if(lisaformat)
+   {
+   mstpar("flen","f",&flen);
+   mstpar("fwid","f",&fwid);
+   mstpar("nx","d",&nx);
+   mstpar("ny","d",&ny_in);
+   getpar("lisafile","s",lisafile);
+   mstpar("rake1","f",&rake[0]);
+   getpar("nmech","d",&nmech);
+   if(nmech == 2)
+      mstpar("rake2","f",&rake[1]);
+   getpar("default_rake","f",&default_rake);
+   getpar("set_rake","f",&set_rake);
+   getpar("rand_rake_degs","f",&rand_rake_degs);
+   }
+
+endpar();
+
+fpr = fopfile(infile,"r");
+
+if(lisaformat)
+   {
+   ny = ny_in;
+   if(flip_at_surface)
+      ny = 2*ny_in;
+
+   slip0 = (struct complex *) check_malloc (nx*ny*sizeof(struct complex));
+   rake0 = (float *) check_malloc (nx*ny*sizeof(float));
+
+   fgets(str,512,fpr);
+   fgets(str,512,fpr);
+   fgets(lhead0,512,fpr);
+   fgets(lhead1,512,fpr);
+   fgets(lhead2,512,fpr);
+
+   for(i=0;i<nx;i++)
+      {
+      for(j=0;j<ny_in;j++)
+         {
+         ip0 = i + j*nx;
+
+	 ss = 0.0;
+	 ds = 0.0;
+	 mech[1] = 0.0;
+	 for(k=0;k<nmech;k++)
+	    {
+            fscanf(fpr,"%f",&mech[k]);
+	    ss = ss + mech[k]*cos(rake[k]*RPERD);
+	    ds = ds + mech[k]*sin(rake[k]*RPERD);
+	    }
+
+	 if(ss != 0.0)
+	    {
+	    rake0[ip0] = (atan(ds/ss))/RPERD;
+	    if(ss < 0.0)
+	       rake0[ip0] = rake0[ip0] + 180.0;
+	    }
+	 else if(ds >= 0.0)
+	    rake0[ip0] = 90.0;
+	 else
+	    rake0[ip0] = -90.0;
+
+         if(ss == 0.0 && ds == 0.0)
+            rake0[ip0] = default_rake;
+
+         if(set_rake > -900.0)
+            rake0[ip0] = set_rake + rand_rake_degs*sfrand(&seed);
+
+         slip0[ip0].re = sqrt(ss*ss + ds*ds);
+	 slip0[ip0].im = 0.0;
+         }
+      }
+   }
+else if(generic_slip == 1)
+   {
+   fgets(str,1024,fpr);
+   while(strncmp(str,"#",1) == 0)
+      fgets(str,1024,fpr);
+
+   sscanf(str,"%d",&gslip.np);
+
+   gslip.spar = (struct slippars *)check_malloc(gslip.np*sizeof(struct slippars));
+   spar = gslip.spar;
+
+   i = 0;
+   savg_in = 0.0;
+   avgdip = 0.0;
+   dmin = 1.0e+15;;
+   while(fgets(str,1024,fpr) != NULL)
+      {
+      sscanf(str,"%f %f %f %f %f %f %f %f %f %f %d",&spar[i].lon,
+                                        &spar[i].lat,
+                                        &spar[i].dep,
+                                        &spar[i].ds,
+                                        &spar[i].dw,
+                                        &spar[i].stk,
+                                        &spar[i].dip,
+                                        &spar[i].rake,
+                                        &spar[i].slip,
+                                        &spar[i].tinit,
+                                        &spar[i].segno);
+
+      if(spar[i].dep < dmin)
+         {
+	 dmin = spar[i].dep;
+	 dtop = dmin - 0.5*spar[i].dw*sin(rperd*spar[i].dip);
+	 }
+
+      savg_in = savg_in + spar[i].slip;
+      avgdip = avgdip + spar[i].dip;
+      i++;
+      }
+   savg_in = savg_in/(float)(i);
+   avgdip = avgdip/(float)(i);
+
+   ny = ny_in;
+   if(flip_at_surface)
+      ny = 2*ny_in;
+
+   slip0 = (struct complex *) check_malloc (nx*ny*sizeof(struct complex));
+   rake0 = (float *) check_malloc (nx*ny*sizeof(float));
+
+   for(i=0;i<nx*ny_in;i++)
+      {
+      slip0[i].re = spar[i].slip;
+      slip0[i].im = 0.0;
+      }
+
+   if(gen_ruptime)
+      {
+      read_velmodel(velfile,&vmod);
+      conv2vrup(&vmod,&rvmod,&avgdip,&dtop,&fwid,&rvfrac,&shal_vrup);
+      }
+   else if(nxfine > 1 || nyfine > 1)
+      {
+      vrup0 = (struct complex *) check_malloc (nx*ny*sizeof(struct complex));
+
+      avg_vrup = 0.0;
+      i = 0;
+      for(j0=0;j0<ny_in;j0++)
+         {
+         y0 = (j0 + 0.5)*dy - dhypo;
+
+         for(i0=0;i0<nx;i0++)
+            {
+            x0 = (i0 + 0.5)*dx - 0.5*flen - shypo;
+
+	    ip0 = i0 + j0*nx;
+
+	    if(spar[ip0].tinit > 0.0)
+	       {
+	       vrup0[ip0].re = sqrt(x0*x0 + y0*y0)/spar[ip0].tinit;
+	       avg_vrup = avg_vrup + vrup0[ip0].re;
+	       i++;
+	       }
+
+	    vrup0[ip0].im = 0.0;
+            }
+         }
+
+      avg_vrup = avg_vrup/(float)(i);
+      for(j0=0;j0<ny_in;j0++)
+         {
+         for(i0=0;i0<nx;i0++)
+            {
+	    ip0 = i0 + j0*nx;
+
+	    if(spar[ip0].tinit <= 0.0 || vrup0[ip0].re <= 0.0)
+	       vrup0[ip0].re = avg_vrup;
+            }
+         }
+      }
+   }
+else
+   {
+   fscanf(fpr,"%f %f",&flen,&fwid);
+   fscanf(fpr,"%d",&nx);
+   fscanf(fpr,"%d",&ny_in);
+
+   ny = ny_in;
+   if(flip_at_surface)
+      ny = 2*ny_in;
+
+   slip0 = (struct complex *) check_malloc (nx*ny*sizeof(struct complex));
+   rake0 = (float *) check_malloc (nx*ny*sizeof(float));
+
+   for(ip0=0;ip0<nx*ny_in;ip0++)
+      {
+      fscanf(fpr,"%f",&slip0[ip0].re);
+      slip0[ip0].im = 0.0;
+      }
+   }
+
+fclose(fpr);
+
+if(flip_at_surface)
+   {
+   for(j=0;j<ny_in;j++)
+      {
+      for(i=0;i<nx;i++)
+         {
+         slip0[i + ((ny-1)-j)*nx].re = slip0[i + j*nx].re;
+         slip0[i + ((ny-1)-j)*nx].im = slip0[i + j*nx].im;
+         rake0[i + ((ny-1)-j)*nx] = rake0[i + j*nx];
+         }
+      }
+
+   if(generic_slip == 1 && gen_ruptime == 0 && (nxfine > 1 || nyfine > 1))
+      {
+      for(j=0;j<ny_in;j++)
+         {
+         for(i=0;i<nx;i++)
+            {
+            vrup0[i + ((ny-1)-j)*nx].re = vrup0[i + j*nx].re;
+            vrup0[i + ((ny-1)-j)*nx].im = vrup0[i + j*nx].im;
+            }
+         }
+      }
+   }
+
+if(xl < 0.0)
+   xl = flen;
+if(yl < 0.0)
+   yl = fwid;
+
+dx = flen/nx;
+dy = fwid/ny_in;
+
+dx2 = dx/nxfine;
+dy2 = dy/nyfine;
+
+nx2 = nx*nxfine;
+ny2 = ny*nyfine;
+
+ny_out = ny2;
+if(flip_at_surface)
+   ny_out = ny2/2;
+
+dkx = 1.0/(nx2*dx2);
+dky = 1.0/(ny2*dy2);
+
+dxcorner = dx/dxcorner;
+if(dxcorner < 0.0)
+   dxcorner = 1;
+
+dycorner = dy/dycorner;
+if(dycorner < 0.0)
+   dycorner = 1;
+
+fprintf(stderr,"nx=%4d ny=%4d dx=%12.5e dy=%12.5e\n",nx,ny,dx,dy);
+fprintf(stderr,"              dxcorner=%12.5f dycorner=%12.5f\n",dxcorner,dycorner);
+fprintf(stderr,"nx2=%4d ny2=%4d dx2=%12.5e dy2=%12.5e\n",nx2,ny2,dx2,dy2);
+
+slip1 = (struct complex *) check_malloc (nx2*ny2*sizeof(struct complex));
+
+fft2d(slip0,nx,ny,-1,&dx,&dy);
+resamp(slip0,nx,ny,slip1,nx2,ny2,&dkx,&dky,&xl,&yl,&seed,&dxcorner,&dycorner);
+
+if(generic_slip == 1 && gen_ruptime == 0 && (nxfine > 1 || nyfine > 1))
+   {
+   vrup1 = (struct complex *) check_malloc (nx2*ny2*sizeof(struct complex));
+   fft2d(vrup0,nx,ny,-1,&dx,&dy);
+   resamp(vrup0,nx,ny,vrup1,nx2,ny2,&dkx,&dky,&xl,&yl,&neg_seed,&fone,&fone);
+   fft2d(vrup1,nx2,ny2,1,&dkx,&dky);
+   fft2d(vrup0,nx,ny,1,&dkx,&dky);
+   }
+
+/* truncate any negative slip values => should double check that spectra is
+   not changed too much  */
+
+if(xl < 1.0e+14 && yl < 1.0e+14)
+   {
+   fft2d(slip1,nx2,ny2,1,&dkx,&dky);
+   for(j=0;j<ny2*nx2;j++)
+      {
+      if(slip1[j].re < 0.0)
+         slip1[j].re = 1.0e-04;
+      }
+   fft2d(slip1,nx2,ny2,-1,&dx2,&dy2);
+   }
+/*
+*/
+
+if(specfile[0] != '\0')
+   {
+   fpw = fopfile(specfile,"w");
+
+   fprintf(fpw,"dkx=%14.7e dky=%14.7e kxmax=%12.5e kymax=%12.5e\n",dkx,dky,0.5/dx2,0.5/dy2);
+
+   amp0 = 1.0;
+   if(norm2one)
+      amp0 = dx2*dy2*sqrt(slip1[0].re*slip1[0].re + slip1[0].im*slip1[0].im);
+
+   if(amp0 == 0.0)
+      amp0 = 1.0;
+
+   for(j=0;j<=ny2/2;j++)
+      {
+      if(j<=ny2/2)
+         ky = j*dky;
+      else
+         ky = (j-ny2)*dky;
+
+      for(i=0;i<=nx2/2;i++)
+         {
+         if(i<=nx2/2)
+            kx = i*dkx;
+         else
+            kx = (i-nx2)*dkx;
+
+         ip = i + j*nx2;
+
+         /* dx2*dy2 for FFT normalization */
+         amp = dx2*dy2*sqrt(slip1[ip].re*slip1[ip].re + slip1[ip].im*slip1[ip].im);
+         amp = amp/amp0;
+
+         lamp = -1.e+20;
+         if(amp > 0.0)
+	    lamp = log10(amp);
+
+         fprintf(fpw,"%14.7e %14.7e %12.5e %12.5e\n",kx,ky,lamp,amp);
+         }
+      }
+   fclose(fpw);
+   }
+
+fft2d(slip1,nx2,ny2,1,&dkx,&dky);
+
+smax = -1;
+savg = 0.0;
+for(j=0;j<ny_out*nx2;j++)
+   {
+   if(slip1[j].re < 0.0)
+      slip1[j].re = 1.0e-04;
+
+   savg = savg + slip1[j].re;
+   if(slip1[j].re > smax)
+      smax = slip1[j].re;
+   }
+savg = savg/(ny_out*nx2);
+
+if(scale_avgslip)
+   {
+   scl = savg_in/savg;
+
+   smax = -1;
+   savg = 0.0;
+   for(j=0;j<ny_out*nx2;j++)
+      {
+      slip1[j].re = scl*slip1[j].re;
+
+      savg = savg + slip1[j].re;
+      if(slip1[j].re > smax)
+         smax = slip1[j].re;
+      }
+   savg = savg/(ny_out*nx2);
+   }
+
+if(slipfile[0] != '\0')
+   {
+   fpw = fopfile(slipfile,"w");
+
+   for(j=0;j<ny_out;j++)
+      {
+      yy = (j+0.5)*dy2;
+      for(i=0;i<nx2;i++)
+         {
+         xx = (i+0.5)*dx2;
+         fprintf(fpw,"%12.5e %12.5e %12.5e\n",xx,yy,slip1[i + j*nx2].re);
+         }
+      }
+   fclose(fpw);
+   }
+
+if(lisaformat && lisafile[0] != '\0')
+   {
+   fpw = fopfile(lisafile,"w");
+
+   fprintf(fpw,"RESAMPLED lisa format slipmodel from file \"%s\"\n",infile);
+   if(nmech == 1)
+      fprintf(fpw,"nx= %d ny=%d\n",nx2,ny_out);
+   else
+      fprintf(fpw,"nx= %d ny=%d nmech= %d (%3.0f %3.0f)\n",nx2,ny_out,nmech,rake[0],rake[1]);
+
+   fprintf(fpw,"%s",lhead0);
+   fprintf(fpw,"%s",lhead1);
+   fprintf(fpw,"%s",lhead2);
+
+   for(i=0;i<nx2;i++)
+      {
+      i0 = i/nxfine;
+
+      for(j=0;j<ny_out;j++)
+         {
+         j0 = j/nyfine;
+	 ip0 = i0 + j0*nx;
+	 ip = i + j*nx2;
+
+         fprintf(fpw,"%8.0f",slip1[ip].re*cos((rake0[ip0]-rake[0])*RPERD));
+	 if(nmech == 2)
+            fprintf(fpw,"%8.0f",slip1[ip].re*sin((rake0[ip0]-rake[0])*RPERD));
+
+         fprintf(fpw,"\n");
+         }
+      }
+   fclose(fpw);
+   }
+
+if(generic_slip && generic_slipfile[0] != '\0')
+   {
+   fpw = fopfile(generic_slipfile,"w");
+
+   fpr = fopfile(infile,"r");
+   fgets(str,1024,fpr);
+   while(strncmp(str,"#",1) == 0)
+      {
+      fprintf(fpw,"%s",str);
+      fgets(str,1024,fpr);
+      }
+   fclose(fpr);
+
+   fprintf(fpw,"%d\n",nxfine*nyfine*gslip.np);
+
+   if((smax-savg) != (float)(0.0))
+      sf = 1.0/(smax-savg);
+   else
+      tsfac = sf = 0.0;
+
+   rt = (float *) check_malloc (nx2*ny_out*sizeof(float));
+
+   for(j=0;j<ny_out;j++)
+      {
+      j0 = j/nyfine;
+      yy = (j + 0.5)*dy2;
+
+      for(i=0;i<nx2;i++)
+         {
+         i0 = i/nxfine;
+         xx = (i + 0.5)*dx2 - 0.5*flen;
+
+	 ip0 = i0 + j0*nx;
+	 ip = i + j*nx2;
+
+         if(gen_ruptime)
+            {
+            get_rupt(&rvmod,&htol,&dhypo,&yy,&shypo,&xx,&rayp,&rupt_rad,&rt[ip]);
+	    rt[ip] = rt[ip] + sf*tsfac*(slip1[ip].re - savg);
+            }
+         else if(nxfine > 1 || nyfine > 1)
+	    {
+	    if(spar[ip0].tinit == 0.0)
+	       avgvr = avg_vrup;
+	    else
+	       {
+	       x0 = (i0 + 0.5)*dx - 0.5*flen - shypo;
+	       y0 = (j0 + 0.5)*dy - dhypo;
+	       avgvr = sqrt(x0*x0 + y0*y0)/spar[ip0].tinit;
+	       }
+
+	    x0 = xx - shypo;
+	    y0 = yy - dhypo;
+
+	    rt[ip] = sqrt(x0*x0 + y0*y0)/avgvr + sf*tsfac*(slip1[ip].re - savg);
+	    rt[ip] = sqrt(x0*x0 + y0*y0)/vrup1[ip].re + sf*tsfac*(slip1[ip].re - savg);
+
+	    }
+         else
+	    rt[ip] = spar[ip0].tinit + sf*tsfac*(slip1[ip].re - savg);
+
+	 if(rt[ip] < xrtmin)
+	    {
+	    k = ip;
+	    l = ip0;
+	    xrtmin = rt[ip];
+	    }
+         }
+      }
+
+   for(j=0;j<ny_out;j++)
+      {
+      j0 = j/nyfine;
+      y0 = (j0 + 0.5)*dy;
+      yy = (j + 0.5)*dy2;
+
+      dd = yy - y0;
+
+      for(i=0;i<nx2;i++)
+         {
+         i0 = i/nxfine;
+         x0 = (i0 + 0.5)*dx;
+         xx = (i + 0.5)*dx2;
+
+         ss = xx - x0;
+
+	 ip0 = i0 + j0*nx;
+	 ip = i + j*nx2;
+
+         ee = ss*sin(rperd*spar[ip0].stk)
+	         + dd*cos(rperd*spar[ip0].dip)*cos(rperd*spar[ip0].stk);
+         nn = ss*cos(rperd*spar[ip0].stk)
+	         - dd*cos(rperd*spar[ip0].dip)*sin(rperd*spar[ip0].stk);
+         hh = dd*sin(rperd*spar[ip0].dip);
+
+	 set_ll(&spar[ip0].lon,&spar[ip0].lat,&xlon,&xlat,&nn,&ee);
+
+	 rupt = rt[ip];
+	 rupt = rt[ip] - xrtmin;
+	 if(rupt < rtmin)
+	    rupt = rtmin;
+
+         fprintf(fpw,"%11.5f %11.5f %8.4f %8.4f %8.4f %6.1f %6.1f %6.1f %8.2f %8.3f %3d\n",
+                                                        xlon,
+                                                        xlat,
+                                                        spar[ip0].dep + hh,
+                                                        spar[ip0].ds/nxfine,
+                                                        spar[ip0].dw/nyfine,
+                                                        spar[ip0].stk,
+                                                        spar[ip0].dip,
+                                                        spar[ip0].rake,
+                                                        slip1[ip].re,
+                                                        rupt,
+                                                        spar[ip0].segno);
+         }
+      }
+   fclose(fpw);
+   }
+}
+
+void resamp(struct complex *s0,int nx0,int ny0,struct complex *s1,int nx1,int ny1,float *dkx,float *dky,float *xl,float *yl,long *seed,float *dxc,float *dyc)
+{
+int i, j, i0, j0, ip0, ip1;
+int i1, j1, nxc2, nyc2;
+float kx, ky, fac, amp, amp0, phs, xl2, yl2;
+float phs1, fac1, wtS, wtD;
+float xp, k2, invkc2;
+
+float pi = 3.14159265;
+
+amp0 = sqrt(s0[0].re*s0[0].re + s0[0].im*s0[0].im);
+if(*xl > 1.0e+14 || *yl > 1.0e+14)
+   amp0 = 0.0;
+
+xl2 = (*xl)*(*xl);
+yl2 = (*yl)*(*yl);
+
+nxc2 = nx0/2;
+nyc2 = ny0/2;
+
+nxc2 = (int)(0.5*nx0*(*dxc) + 0.5);
+if(nxc2 > nx0/2)
+   nxc2 = nx0/2;
+if(nxc2 < 2)
+   nxc2 = 2;
+
+nyc2 = (int)(0.5*ny0*(*dyc) + 0.5);
+if(nyc2 > ny0/2)
+   nyc2 = ny0/2;
+if(nyc2 < 2)
+   nyc2 = 2;
+
+invkc2 = nxc2*(*dkx)*nyc2*(*dky);
+invkc2 = 1.0/(invkc2);
+
+fprintf(stderr,"%d %d\n",nxc2,nyc2);
+
+for(j1=0;j1<=ny1/2;j1++)  /* only do positive half, then use symmetry */
+   {
+   j0 = j1;
+   ky = j1*(*dky);
+
+   for(i1=0;i1<nx1;i1++)
+      {
+      if(i1 <= nx1/2)
+	 {
+	 i0 = i1;
+         kx = i1*(*dkx);
+	 }
+      else
+	 {
+         kx = (i1 - nx1)*(*dkx);
+	 i0 = nx0 - (nx1  - i1);
+	 }
+
+      ip1 = i1 + j1*nx1;
+
+/*
+      i0 = i1;
+      if(i0 > nx0/2)
+         {
+	 i0 = nx0 - (nx1  - i1);
+	 if(i0 <= nx0/2)
+	    i0 = -1;
+	 }
+
+      if(j1 <= ny0/2 && i0 >= 0)
+*/
+      i0 = i1;
+      if(i0 > nxc2 && i0 <= nx0/2)
+	 i0 = -1;
+      else if(i0 > nx0/2)
+         {
+	 i0 = nx0 - (nx1  - i1);
+	 if(i0 <= (nx0-nxc2))
+	    i0 = -1;
+	 }
+
+      if(j1 <= nyc2 && i0 >= 0)
+         {
+         ip0 = i0 + j0*nx0;
+
+         s1[ip1].re = s0[ip0].re;
+         s1[ip1].im = s0[ip0].im;
+	 }
+      else if(*seed > -1)
+         {
+         amp = kx*kx*xl2 + ky*ky*yl2;
+         fac = amp0/sqrt(1.0 + amp*amp);
+         phs = pi*sfrand(seed);
+
+         s1[ip1].re = fac*cos(phs);
+         s1[ip1].im = fac*sin(phs);
+	 }
+      else
+         {
+         s1[ip1].re = 0.0;
+         s1[ip1].im = 0.0;
+	 }
+      }
+   }
+
+/*
+   Enforce Hermitian symmetry to make slip real valued
+*/
+
+for(j=1;j<=(ny1-1)/2;j++)
+   {
+   s1[(ny1-j)*nx1].re = s1[j*nx1].re;
+   s1[(ny1-j)*nx1].im = -s1[j*nx1].im;
+   }
+
+for(i=1;i<=(nx1-1)/2;i++)
+   {
+   s1[nx1-i].re = s1[i].re;
+   s1[nx1-i].im = -s1[i].im;
+   }
+
+for(j=1;j<=ny1/2;j++)
+   {
+   for(i=1;i<=nx1/2;i++)
+      {
+      s1[(nx1-i)+(ny1-j)*nx1].re = s1[i+j*nx1].re;
+      s1[(nx1-i)+(ny1-j)*nx1].im = -s1[i+j*nx1].im;
+
+      s1[i+(ny1-j)*nx1].re = s1[(nx1-i)+j*nx1].re;
+      s1[i+(ny1-j)*nx1].im = -s1[(nx1-i)+j*nx1].im;
+      }
+   }
+}
+
+void resampOLD2(struct complex *s0,int nx0,int ny0,struct complex *s1,int nx1,int ny1,float *dkx,float *dky,float *xl,float *yl,long *seed,float *dxc,float *dyc)
+{
+int i, j, i0, j0, ip0, ip1;
+int i1, j1, nxc2, nyc2;
+float kx, ky, fac, amp, amp0, phs, xl2, yl2;
+float phs1, fac1, wtS, wtD;
+float xp, k2, invkc2;
+
+float pi = 3.14159265;
+
+amp0 = sqrt(s0[0].re*s0[0].re + s0[0].im*s0[0].im);
+if(*xl > 1.0e+14 || *yl > 1.0e+14)
+   amp0 = 0.0;
+
+xl2 = (*xl)*(*xl);
+yl2 = (*yl)*(*yl);
+
+/*
+
+   Transition between deterministic and stochastic parts of spectrum
+   are given by
+
+       F = wtS*stoch + wtD*deter
+
+   with
+
+       wtD = {1 + k2/Kc2}^-(xp)     (kind of a butterworth filter)
+       wtS = 1 - wtD
+
+   and
+
+       k2 = kx*kx + ky*ky          (k-squared)
+       Kc2 = (N*dky)*(N*dkx)       (corner wavenumber of transition)
+
+   The parameter N specifies the number of dk's in the corner (somewhat
+   like a fraction of the total wavenumber space).  The exponent (xp)
+   gives the sharpness of the transition.  Based on very limited
+   testing, I came up with
+
+       N = 4
+       xp = 2.0
+
+*/
+
+xp = 2.0;
+
+nxc2 = nx0/2;
+nyc2 = ny0/2;
+
+nxc2 = (int)(0.5*nx0*(*dxc) + 0.5);
+if(nxc2 > nx0/2)
+   nxc2 = nx0/2;
+if(nxc2 < 2)
+   nxc2 = 2;
+
+nyc2 = (int)(0.5*ny0*(*dyc) + 0.5);
+if(nyc2 > ny0/2)
+   nyc2 = ny0/2;
+if(nyc2 < 2)
+   nyc2 = 2;
+
+invkc2 = nxc2*(*dkx)*nyc2*(*dky);
+invkc2 = 1.0/(invkc2);
+
+fprintf(stderr,"%d %d\n",nxc2,nyc2);
+
+for(j1=0;j1<=ny1/2;j1++)  /* only do positive half, then use symmetry */
+   {
+   j0 = j1;
+   ky = j1*(*dky);
+
+   for(i1=0;i1<nx1;i1++)
+      {
+      if(i1 <= nx1/2)
+	 {
+	 i0 = i1;
+         kx = i1*(*dkx);
+	 }
+      else
+	 {
+         kx = (i1 - nx1)*(*dkx);
+	 i0 = nx0 - (nx1  - i1);
+	 }
+
+      ip1 = i1 + j1*nx1;
+
+      amp = kx*kx*xl2 + ky*ky*yl2;
+      fac = amp0/sqrt(1.0 + amp*amp);
+      phs = pi*sfrand(seed);
+
+      fac1 = 0.0;
+      phs1 = 0.0;
+      if(i0 >= 0 && i0 < nx0 && j0 <= ny0/2)
+         {
+         ip0 = i0 + j0*nx0;
+         fac1 = sqrt(s0[ip0].re*s0[ip0].re + s0[ip0].im*s0[ip0].im);
+
+         phs1 = 0.5*pi;
+         if(s0[ip0].re != 0.0)
+            {
+            phs1 = atan(s0[ip0].im/s0[ip0].re);
+            if(s0[ip0].re < 0.0)
+               phs1 = phs1 + pi;
+            }
+         else if(s0[ip0].im < 0.0)
+            phs1 = -0.5*pi;
+	 }
+
+      k2 = (kx*kx + ky*ky)*invkc2;
+      wtD = exp(-xp*log(1.0 + k2));
+      wtS = 1.0 - wtD;
+
+      s1[ip1].re = wtS*fac*cos(phs) + wtD*fac1*cos(phs1);
+      s1[ip1].im = wtS*fac*sin(phs) + wtD*fac1*sin(phs1);
+      }
+   }
+
+/*
+   Enforce Hermitian symmetry to make slip real valued
+*/
+
+for(j=1;j<=(ny1-1)/2;j++)
+   {
+   s1[(ny1-j)*nx1].re = s1[j*nx1].re;
+   s1[(ny1-j)*nx1].im = -s1[j*nx1].im;
+   }
+
+for(i=1;i<=(nx1-1)/2;i++)
+   {
+   s1[nx1-i].re = s1[i].re;
+   s1[nx1-i].im = -s1[i].im;
+   }
+
+for(j=1;j<=ny1/2;j++)
+   {
+   for(i=1;i<=nx1/2;i++)
+      {
+      s1[(nx1-i)+(ny1-j)*nx1].re = s1[i+j*nx1].re;
+      s1[(nx1-i)+(ny1-j)*nx1].im = -s1[i+j*nx1].im;
+
+      s1[i+(ny1-j)*nx1].re = s1[(nx1-i)+j*nx1].re;
+      s1[i+(ny1-j)*nx1].im = -s1[(nx1-i)+j*nx1].im;
+      }
+   }
+}
+
+void fft2d(struct complex *xc,int n1,int n2,int isgn,float *d1,float *d2)
+{
+int i, j, ip;
+float *space;
+struct complex *xtc;
+float normf;
+
+normf = (*d1)*(*d2);
+
+space = (float *) check_malloc (2*(n1+n2)*sizeof(float));
+
+for(j=0;j<n2;j++)
+   fourg_(xc+j*n1,&n1,&isgn,space);
+
+xtc = (struct complex *) check_malloc (n2*sizeof(struct complex));
+
+for(i=0;i<n1;i++)
+   {
+   for(j=0;j<n2;j++)
+      {
+      ip = i + j*n1;
+
+      xtc[j].re = xc[ip].re;
+      xtc[j].im = xc[ip].im;
+      }
+
+   fourg_(xtc,&n2,&isgn,space);
+
+   for(j=0;j<n2;j++)
+      {
+      ip = i + j*n1;
+
+      xc[ip].re = normf*xtc[j].re;
+      xc[ip].im = normf*xtc[j].im;
+      }
+   }
+
+free(space);
+free(xtc);
+}
+
+FILE *fopfile(char *name,char *mode)
+{
+FILE *fp;
+
+if((fp = fopen(name,mode)) == NULL)
+   {
+   fprintf(stderr,"CAN'T FOPEN FILE = %s, MODE = %s\n", name, mode);
+   exit(-1);
+   }
+return(fp);
+}
+
+void *check_malloc(int len)
+{
+void *ptr;
+
+ptr = (void *) malloc (len);
+
+if(ptr == NULL)
+   {
+   fprintf(stderr,"*****  memory allocation error\n");
+   exit(-1);
+   }
+
+return(ptr);
+}
+
+void resample_slip(float *rslip,int nx,int ny,float dx,float dy,float *slip,int nx0,int ny0,float dx0,float dy0)
+{
+int ix, iy, ip, ip0, ix0, iy0, ix1, iy1;
+float xp1, yp1, xp2, yp2, x1, y1, x2, y2, xa1, ya1, xa2, ya2;
+float area, darea, sum;
+
+area = dx*dy;
+
+for(iy=0;iy<ny;iy++)
+   {
+   yp1 = iy*dy;
+   yp2 = yp1 + dy;
+
+   iy1 = (int)(yp1/dy0);
+
+   for(ix=0;ix<nx;ix++)
+      {
+      xp1 = ix*dx;
+      xp2 = xp1 + dx;
+
+      ix1 = (int)(xp1/dx0);
+
+      y1 = iy1*dy0;
+      y2 = y1 + dy0;
+
+      sum = 0.0;
+      while(y1 < yp2)
+         {
+         if(y1 < yp1)
+            ya1 = yp1;
+         else
+            ya1 = y1;
+
+         if(y2 > yp2)
+            ya2 = yp2;
+         else
+            ya2 = y2;
+
+         iy0 = (int)(y1/dy0);
+         if(iy0 >= 0 && iy0 < ny0)
+            {
+            x1 = ix1*dx0;
+            x2 = x1 + dx0;
+
+            while(x1 < xp2)
+               {
+               if(x1 < xp1)
+                  xa1 = xp1;
+               else
+                  xa1 = x1;
+
+               if(x2 > xp2)
+                  xa2 = xp2;
+               else
+                  xa2 = x2;
+
+               ix0 = (int)(x1/dx0);
+               if(ix0 >= 0 && ix0 < nx0)
+                  {
+                  darea = (xa2-xa1)*(ya2-ya1)/area;
+                  ip0 = ix0 + iy0*nx0;
+                  sum = sum + slip[ip0]*darea;
+                  }
+
+               x1 = x2;
+               x2 = x1 + dx0;
+               }
+            }
+
+         y1 = y2;
+         y2 = y1 + dy0;
+         }
+
+      ip = ix + iy*nx;
+      rslip[ip] = sum;
+      }
+   }
+}
+
+static  long    frandx = 1;
+
+/* frand() returns a uniform distribution of random numbers
+ * in the range -1.0 -> 1.0.
+ */
+double frand(void)
+{
+frandx = (frandx * 1103515245 + 12345) & 0x7fffffff;
+return((double)(frandx)/1073741824.0 - 1.0);
+}
+
+/* sfrand() returns a uniform distribution of random numbers
+ * in the range -1.0 -> 1.0.
+ */
+double sfrand(long *seed)
+{
+*seed = ((*seed) * 1103515245 + 12345) & 0x7fffffff;
+return((double)(*seed)/1073741824.0 - 1.0);
+}
+
+void smooth_slip(float *s1,int nx,int ny,float *stmp)
+{
+int ip, ix, iy;
+float c0, c1, sum;
+
+c0 = 1.0;
+c1 = 0.2;
+
+stmp[0] = (c1*(s1[1] + s1[nx] + s1[nx+1]) + c0*s1[0])/(c0+3*c1);
+for(ix=1;ix<nx-1;ix++)
+   {
+   ip = ix;
+   stmp[ip] =   (c1*(s1[ip-1]                + s1[ip+1])
+	       + c1*(s1[ip+nx-1] + s1[ip+nx] + s1[ip+nx+1])
+	       + c0*s1[ip])/(c0+5*c1);
+   }
+stmp[nx-1] = (c1*(s1[nx-2] + s1[2*nx-1] + s1[2*nx-2]) + c0*s1[nx-1])/(c0+3*c1);
+
+for(iy=1;iy<ny-1;iy++)
+   {
+   ip = iy*nx;
+   stmp[ip] = (c1*(s1[ip-nx] + s1[ip-nx+1])
+	       + c1*(        + s1[ip+1])
+	       + c1*(s1[ip+nx] + s1[ip+nx+1])
+	       + c0*s1[ip])/(c0+5*c1);
+
+   for(ix=1;ix<nx-1;ix++)
+      {
+      ip = ix + iy*nx;
+      stmp[ip] = (c1*(s1[ip-nx-1] + s1[ip-nx] + s1[ip-nx+1])
+	       + c1*(s1[ip-1]                + s1[ip+1])
+	       + c1*(s1[ip+nx-1] + s1[ip+nx] + s1[ip+nx+1])
+	       + c0*s1[ip])/(c0+8*c1);
+      }
+
+   ip = nx-1 + iy*nx;
+   stmp[ip] = (c1*(s1[ip-nx-1] + s1[ip-nx])
+	       + c1*(s1[ip-1]             )
+	       + c1*(s1[ip+nx-1] + s1[ip+nx])
+	       + c0*s1[ip])/(c0+5*c1);
+   }
+
+ip = (ny-1)*nx;
+stmp[ip] = (c1*(s1[ip+1] + s1[ip-nx] + s1[ip-nx+1]) + c0*s1[ip])/(c0+3*c1);
+for(ix=1;ix<nx-1;ix++)
+   {
+   ip = ix + (ny-1)*nx;
+   stmp[ip] = (c1*(s1[ip-nx-1] + s1[ip-nx] + s1[ip-nx+1])
+	       + c1*(s1[ip-1]                + s1[ip+1])
+	       + c0*s1[ip])/(c0+5*c1);
+   }
+ip = nx-1 + (ny-1)*nx;
+stmp[ip] = (c1*(s1[ip-1] + s1[ip-nx] + s1[ip-nx-1]) + c0*s1[ip])/(c0+3*c1);
+
+for(iy=0;iy<ny;iy++)
+   {
+   for(ix=0;ix<nx;ix++)
+      {
+      ip = ix + iy*nx;
+      s1[ip] = stmp[ip];
+      }
+   }
+}
+
+double gaus_rand(float *sigma,float *mean,long *seed)
+{
+double r = 0.0;
+double six = 6.0;
+double one = 1.0;
+double half = 0.5;
+int i;
+
+for(i=0;i<12;i++)
+   r = r + sfrand(seed);
+
+return((double)((r - six)*(*sigma) + *mean));
+}
+
+void set_ll(float *elon,float *elat,float *slon,float *slat,float *sn,float *se)
+{  
+float kperd_n, kperd_e;
+double e2, den, g2, lat0;
+float cosA, sinA;
+
+double rperd = 0.017453293;
+double radius = 6378.139;
+double f = 298.256;
+
+f = 1.0/f;
+e2 = 2.0*f - f*f;
+g2 = e2/((1.0 - f)*(1.0 - f));
+
+lat0 = atan((1.0 - f)*tan((*elat)*rperd));
+
+cosA = cos(lat0);
+sinA = sin(lat0);
+
+den = sqrt(1.0/(1.0 + g2*sinA*sinA));
+kperd_e = rperd*radius*cosA*den;
+kperd_n = rperd*radius*(sqrt(1.0 + g2*sinA*sinA*(2.0 + g2)))*den*den*den;
+
+*slat = (*sn)/kperd_n + *elat;
+*slon = (*se)/kperd_e + *elon;
+}
+
+void resampOLD(struct complex *s0,int nx0,int ny0,struct complex *s1,int nx1,int ny1,float *dkx,float *dky,float *xl,float *yl,long *seed,float *dxc,float *dyc)
+{
+int i, j, ip0, ip1;
+int i1, j1, nxc2, nyc2;
+float kx, ky, amp, amp0, phs, xl2, yl2;
+
+float pi = 3.14159265;
+
+amp0 = sqrt(s0[0].re*s0[0].re + s0[0].im*s0[0].im);
+if(*xl > 1.0e+14 || *yl > 1.0e+14)
+   amp0 = 0.0;
+
+xl2 = (*xl)*(*xl);
+yl2 = (*yl)*(*yl);
+
+nxc2 = nx0/2;
+nyc2 = ny0/2;
+
+nxc2 = (int)(0.5*nx0*(*dxc) + 0.5);
+if(nxc2 > nx0/2)
+   nxc2 = nx0/2;
+
+nyc2 = (int)(0.5*ny0*(*dyc) + 0.5);
+if(nyc2 > ny0/2)
+   nyc2 = ny0/2;
+
+fprintf(stderr,"%d %d\n",nxc2,nyc2);
+
+for(j=0;j<ny0;j++)
+   {
+   if(j <= ny0/2)
+      j1 = j;
+   else
+      j1 = ny1 - (ny0 - j);
+
+   for(i=0;i<nx0;i++)
+      {
+      if(i <= nx0/2)
+         i1 = i;
+      else
+         i1 = nx1 - (nx0  - i);
+
+      ip0 = i + j*nx0;
+      ip1 = i1 + j1*nx1;
+
+      s1[ip1].re = s0[ip0].re;
+      s1[ip1].im = s0[ip0].im;
+      }
+
+   if(j1 <= ny1/2)
+      ky = j1*(*dky);
+   else
+      ky = (j1-ny1)*(*dky);
+
+   for(i1=nxc2+1;i1<=nx1-nxc2;i1++)
+      {
+      if(i1 <= nx1/2)
+         kx = i1*(*dkx);
+      else
+         kx = (i1-nx1)*(*dkx);
+
+      amp = kx*kx*xl2 + ky*ky*yl2;
+      amp = amp0/sqrt(1.0 + amp*amp);
+
+      phs = pi*sfrand(seed);
+
+      ip1 = i1 + j1*nx1;
+
+      s1[ip1].re = amp*cos(phs);
+      s1[ip1].im = amp*sin(phs);
+      }
+   }
+
+for(j1=nyc2+1;j1<=ny1-nyc2;j1++)
+   {
+   if(j1 <= ny1/2)
+      ky = j1*(*dky);
+   else
+      ky = (j1-ny1)*(*dky);
+
+   for(i1=0;i1<nx1;i1++)
+      {
+      if(i1 <= nx1/2)
+         kx = i1*(*dkx);
+      else
+         kx = (i1-nx1)*(*dkx);
+
+      amp = kx*kx*xl2 + ky*ky*yl2;
+      amp = amp0/sqrt(1.0 + amp*amp);
+
+      phs = pi*frand();
+
+      ip1 = i1 + j1*nx1;
+
+      s1[ip1].re = amp*cos(phs);
+      s1[ip1].im = amp*sin(phs);
+      }
+   }
+
+/*
+   Enforce Hermitian symmetry to make slip real valued
+*/
+
+for(j=1;j<=(ny1-1)/2;j++)
+   {
+   s1[(ny1-j)*nx1].re = s1[j*nx1].re;
+   s1[(ny1-j)*nx1].im = -s1[j*nx1].im;
+   }
+
+for(i=1;i<=(nx1-1)/2;i++)
+   {
+   s1[nx1-i].re = s1[i].re;
+   s1[nx1-i].im = -s1[i].im;
+   }
+
+for(j=1;j<=ny1/2;j++)
+   {
+   for(i=1;i<=nx1/2;i++)
+      {
+      s1[(nx1-i)+(ny1-j)*nx1].re = s1[i+j*nx1].re;
+      s1[(nx1-i)+(ny1-j)*nx1].im = -s1[i+j*nx1].im;
+
+      s1[i+(ny1-j)*nx1].re = s1[(nx1-i)+j*nx1].re;
+      s1[i+(ny1-j)*nx1].im = -s1[(nx1-i)+j*nx1].im;
+      }
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/resamp_slip.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/resamp_slip.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/resamp_slip.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,666 @@
+#include <errno.h>
+#include <fcntl.h>
+#include <math.h>
+#include <stdio.h>
+#include <unistd.h>
+
+#include <sys/file.h>
+#include <sys/procfs.h>
+#include <sys/resource.h>
+#include <sys/signal.h>
+#include <sys/stat.h>
+#include <sys/syscall.h>
+#include <sys/time.h>
+#include <sys/types.h>
+
+#define MAXTOL 0.01
+#define         RPERD           0.017453293
+
+struct complex
+   {
+   float re;
+   float im;
+   };
+
+void *check_malloc(int);
+FILE *fopfile(char*, char*);
+
+void fft2d(struct complex *, int, int, int,float *,float *);
+void resamp(struct complex *,int,int,struct complex *,int,int,float *,float *,float *,float *,long *,float *,float *);
+
+void resample_slip(float *,int,int,float,float,float *,int,int,float,float);
+void smooth_slip(float *,int,int,float *);
+
+double frand(void);
+double Xsfrand(long *);
+double sfrand(long *);
+double gaus_rand(float *,float *,long *);
+
+main(int ac,char **av)
+{
+FILE *fpr, *fpw;
+struct complex *slip0, *slip1;
+float *rslip, flen, fwid, dx, dy, dx2, dy2, amp0, amp, lamp;
+float dkx, dky, kx, ky, xx, yy;
+int nx, ny, nxfine, nyfine, nx2, ny2;
+int i, j, k, l, ip0, ipf, ip, i0, j0;
+char infile[256], slipfile[256], specfile[256], str[512];
+char lisafile[512], lhead0[512], lhead1[512], lhead2[512];
+
+float xl = -1.0;
+float yl = -1.0;
+
+float *s1, *s2;
+int smooth = 0;
+int lisaformat = 0;
+int norm2one = 1;
+int npad = 0;
+
+float mech[2], rake[2], *rake0, ss, ds;
+int nmech = 1;
+
+float pi = 3.14159265;
+
+long seed = 0;
+
+float dxcorner = -1.0;
+float dycorner = -1.0;
+
+float default_rake = 0.0;
+
+rake[0] = 0.0;
+rake[1] = 0.0;
+
+lisafile[0] = '\0';
+
+setpar(ac,av);
+mstpar("infile","s",infile);
+mstpar("slipfile","s",slipfile);
+mstpar("specfile","s",specfile);
+mstpar("nxfine","d",&nxfine);
+mstpar("nyfine","d",&nyfine);
+getpar("xl","f",&xl);
+getpar("yl","f",&yl);
+getpar("dxcorner","f",&dxcorner);
+getpar("dycorner","f",&dycorner);
+getpar("seed","d",&seed);
+getpar("npad","d",&npad);
+getpar("smooth","d",&smooth);
+getpar("norm2one","d",&norm2one);
+getpar("lisaformat","d",&lisaformat);
+if(lisaformat)
+   {
+   mstpar("flen","f",&flen);
+   mstpar("fwid","f",&fwid);
+   mstpar("nx","d",&nx);
+   mstpar("ny","d",&ny);
+   getpar("lisafile","s",lisafile);
+   mstpar("rake1","f",&rake[0]);
+   getpar("nmech","d",&nmech);
+   if(nmech == 2)
+      mstpar("rake2","f",&rake[1]);
+   getpar("default_rake","f",&default_rake);
+   }
+endpar();
+
+fpr = fopfile(infile,"r");
+
+if(lisaformat)
+   {
+   slip0 = (struct complex *) check_malloc (nx*ny*sizeof(struct complex));
+   rake0 = (float *) check_malloc (nx*ny*sizeof(float));
+
+   fgets(str,512,fpr);
+   fgets(str,512,fpr);
+   fgets(lhead0,512,fpr);
+   fgets(lhead1,512,fpr);
+   fgets(lhead2,512,fpr);
+
+   for(i=0;i<nx;i++)
+      {
+      for(j=0;j<ny;j++)
+         {
+         ip0 = i + j*nx;
+
+	 ss = 0.0;
+	 ds = 0.0;
+	 mech[1] = 0.0;
+	 for(k=0;k<nmech;k++)
+	    {
+            fscanf(fpr,"%f",&mech[k]);
+	    ss = ss + mech[k]*cos(rake[k]*RPERD);
+	    ds = ds + mech[k]*sin(rake[k]*RPERD);
+	    }
+
+	 if(ss != 0.0)
+	    {
+	    rake0[ip0] = (atan(ds/ss))/RPERD;
+	    if(ss < 0.0)
+	       rake0[ip0] = rake0[ip0] + 180.0;
+	    }
+	 else if(ds >= 0.0)
+	    rake0[ip0] = 90.0;
+	 else
+	    rake0[ip0] = -90.0;
+
+         if(ss == 0.0 && ds == 0.0)
+            rake0[ip0] = default_rake;
+
+         slip0[ip0].re = sqrt(mech[0]*mech[0] + mech[1]*mech[1]);
+         slip0[ip0].re = sqrt(ss*ss + ds*ds);
+	 slip0[ip0].im = 0.0;
+         }
+      }
+   }
+else
+   {
+   fscanf(fpr,"%f %f",&flen,&fwid);
+   fscanf(fpr,"%d",&nx);
+   fscanf(fpr,"%d",&ny);
+
+   slip0 = (struct complex *) check_malloc (nx*ny*sizeof(struct complex));
+
+   for(ip0=0;ip0<nx*ny;ip0++)
+      {
+      fscanf(fpr,"%f",&slip0[ip0].re);
+      slip0[ip0].im = 0.0;
+      }
+   }
+
+fclose(fpr);
+
+if(xl < 0.0)
+   xl = flen;
+if(yl < 0.0)
+   yl = fwid;
+
+dx = flen/nx;
+dy = fwid/ny;
+
+dx2 = dx/nxfine;
+dy2 = dy/nyfine;
+
+nx2 = nx*nxfine;
+ny2 = ny*nyfine;
+
+dkx = 1.0/(nx2*dx2);
+dky = 1.0/(ny2*dy2);
+
+dxcorner = dx/dxcorner;
+if(dxcorner < 0.0)
+   dxcorner = 1;
+
+dycorner = dy/dycorner;
+if(dycorner < 0.0)
+   dycorner = 1;
+
+fprintf(stderr,"nx=%4d ny=%4d dx=%12.5e dy=%12.5e\n",nx,ny,dx,dy);
+fprintf(stderr,"              dxcorner=%12.5f dycorner=%12.5f\n",dxcorner,dycorner);
+fprintf(stderr,"nx2=%4d ny2=%4d dx2=%12.5e dy2=%12.5e\n",nx2,ny2,dx2,dy2);
+
+slip1 = (struct complex *) check_malloc (nx2*ny2*sizeof(struct complex));
+
+fft2d(slip0,nx,ny,-1,&dx,&dy);
+
+resamp(slip0,nx,ny,slip1,nx2,ny2,&dkx,&dky,&xl,&yl,&seed,&dxcorner,&dycorner);
+
+/* truncate any negative slip values => should double check that spectra is
+   not changed too much  */
+
+if(xl < 1.0e+14 && yl < 1.0e+14)
+   {
+   fft2d(slip1,nx2,ny2,1,&dkx,&dky);
+   for(j=0;j<ny2*nx2;j++)
+      {
+      if(slip1[j].re < 0.0)
+         slip1[j].re = 1.0e-04;
+      }
+   fft2d(slip1,nx2,ny2,-1,&dx2,&dy2);
+   }
+/*
+*/
+
+fpw = fopfile(specfile,"w");
+
+fprintf(fpw,"dkx=%14.7e dky=%14.7e kxmax=%12.5e kymax=%12.5e\n",dkx,dky,0.5/dx2,0.5/dy2);
+
+amp0 = 1.0;
+if(norm2one)
+   amp0 = dx2*dy2*sqrt(slip1[0].re*slip1[0].re + slip1[0].im*slip1[0].im);
+
+if(amp0 == 0.0)
+   amp0 = 1.0;
+
+for(j=0;j<=ny2/2;j++)
+   {
+   if(j<=ny2/2)
+      ky = j*dky;
+   else
+      ky = (j-ny2)*dky;
+
+   for(i=0;i<=nx2/2;i++)
+      {
+      if(i<=nx2/2)
+         kx = i*dkx;
+      else
+         kx = (i-nx2)*dkx;
+
+      ip = i + j*nx2;
+
+      /* dx2*dy2 for FFT normalization */
+      amp = dx2*dy2*sqrt(slip1[ip].re*slip1[ip].re + slip1[ip].im*slip1[ip].im);
+      amp = amp/amp0;
+
+      lamp = -1.e+20;
+      if(amp > 0.0)
+	 lamp = log10(amp);
+
+      fprintf(fpw,"%14.7e %14.7e %12.5e %12.5e\n",kx,ky,lamp,amp);
+      }
+   }
+fclose(fpw);
+
+/*
+for(j=0;j<ny2;j++)
+   {
+   for(i=0;i<nx2;i++)
+      {
+      fprintf(stderr,"%12.5e %12.5e\n",slip1[i + j*nx2].re,slip1[i+j*nx2].im);
+      }
+   }
+*/
+
+fft2d(slip1,nx2,ny2,1,&dkx,&dky);
+
+fpw = fopfile(slipfile,"w");
+
+for(j=0;j<ny2;j++)
+   {
+   yy = (j+0.5)*dy2;
+   for(i=0;i<nx2;i++)
+      {
+      xx = (i+0.5)*dx2;
+      fprintf(fpw,"%12.5e %12.5e %12.5e\n",xx,yy,slip1[i + j*nx2].re);
+      }
+   }
+fclose(fpw);
+
+if(lisaformat && lisafile[0] != '\0')
+   {
+   fpw = fopfile(lisafile,"w");
+
+   fprintf(fpw,"RESAMPLED lisa format slipmodel from file \"%s\"\n",infile);
+   if(nmech == 1)
+      fprintf(fpw,"nx= %d ny=%d\n",nx2,ny2);
+   else
+      fprintf(fpw,"nx= %d ny=%d nmech= %d (%3.0f %3.0f)\n",nx2,ny2,nmech,rake[0],rake[1]);
+
+   fprintf(fpw,"%s",lhead0);
+   fprintf(fpw,"%s",lhead1);
+   fprintf(fpw,"%s",lhead2);
+
+   for(i=0;i<nx2;i++)
+      {
+      i0 = i/nxfine;
+
+      for(j=0;j<ny2;j++)
+         {
+         j0 = j/nyfine;
+	 ip0 = i0 + j0*nx;
+	 ip = i + j*nx2;
+
+         fprintf(fpw,"%8.0f",slip1[ip].re*cos((rake0[ip0]-rake[0])*RPERD));
+	 if(nmech == 2)
+            fprintf(fpw,"%8.0f",slip1[ip].re*sin((rake0[ip0]-rake[0])*RPERD));
+
+         fprintf(fpw,"\n");
+         }
+      }
+   fclose(fpw);
+   }
+}
+
+void resamp(struct complex *s0,int nx0,int ny0,struct complex *s1,int nx1,int ny1,float *dkx,float *dky,float *xl,float *yl,long *seed,float *dxc,float *dyc)
+{
+int i, j, ip0, ip1;
+int i1, j1, nxc2, nyc2;
+float kx, ky, amp, amp0, phs, xl2, yl2;
+
+float pi = 3.14159265;
+
+amp0 = sqrt(s0[0].re*s0[0].re + s0[0].im*s0[0].im);
+if(*xl > 1.0e+14 || *yl > 1.0e+14)
+   amp0 = 0.0;
+
+xl2 = (*xl)*(*xl);
+yl2 = (*yl)*(*yl);
+
+nxc2 = nx0/2;
+nyc2 = ny0/2;
+
+nxc2 = (int)(0.5*nx0*(*dxc) + 0.5);
+if(nxc2 > nx0/2)
+   nxc2 = nx0/2;
+
+nyc2 = (int)(0.5*ny0*(*dyc) + 0.5);
+if(nyc2 > ny0/2)
+   nyc2 = ny0/2;
+
+fprintf(stderr,"%d %d\n",nxc2,nyc2);
+
+for(j=0;j<ny0;j++)
+   {
+   if(j <= ny0/2)
+      j1 = j;
+   else
+      j1 = ny1 - (ny0 - j);
+
+   for(i=0;i<nx0;i++)
+      {
+      if(i <= nx0/2)
+         i1 = i;
+      else
+         i1 = nx1 - (nx0  - i);
+
+      ip0 = i + j*nx0;
+      ip1 = i1 + j1*nx1;
+
+      s1[ip1].re = s0[ip0].re;
+      s1[ip1].im = s0[ip0].im;
+      }
+
+   if(j1 <= ny1/2)
+      ky = j1*(*dky);
+   else
+      ky = (j1-ny1)*(*dky);
+
+   for(i1=nxc2+1;i1<=nx1-nxc2;i1++)
+      {
+      if(i1 <= nx1/2)
+         kx = i1*(*dkx);
+      else
+         kx = (i1-nx1)*(*dkx);
+
+      amp = kx*kx*xl2 + ky*ky*yl2;
+      amp = amp0/sqrt(1.0 + amp*amp);
+
+      phs = pi*sfrand(seed);
+
+      ip1 = i1 + j1*nx1;
+
+      s1[ip1].re = amp*cos(phs);
+      s1[ip1].im = amp*sin(phs);
+      }
+   }
+
+for(j1=nyc2+1;j1<=ny1-nyc2;j1++)
+   {
+   if(j1 <= ny1/2)
+      ky = j1*(*dky);
+   else
+      ky = (j1-ny1)*(*dky);
+
+   for(i1=0;i1<nx1;i1++)
+      {
+      if(i1 <= nx1/2)
+         kx = i1*(*dkx);
+      else
+         kx = (i1-nx1)*(*dkx);
+
+      amp = kx*kx*xl2 + ky*ky*yl2;
+      amp = amp0/sqrt(1.0 + amp*amp);
+
+      phs = pi*frand();
+
+      ip1 = i1 + j1*nx1;
+
+      s1[ip1].re = amp*cos(phs);
+      s1[ip1].im = amp*sin(phs);
+      }
+   }
+}
+
+void fft2d(struct complex *xc,int n1,int n2,int isgn,float *d1,float *d2)
+{
+int i, j, ip;
+float *space;
+struct complex *xtc;
+float normf;
+
+normf = (*d1)*(*d2);
+
+space = (float *) check_malloc (2*(n1+n2)*sizeof(float));
+
+for(j=0;j<n2;j++)
+   fourg_(xc+j*n1,&n1,&isgn,space);
+
+xtc = (struct complex *) check_malloc (n2*sizeof(struct complex));
+
+for(i=0;i<n1;i++)
+   {
+   for(j=0;j<n2;j++)
+      {
+      ip = i + j*n1;
+
+      xtc[j].re = xc[ip].re;
+      xtc[j].im = xc[ip].im;
+      }
+
+   fourg_(xtc,&n2,&isgn,space);
+
+   for(j=0;j<n2;j++)
+      {
+      ip = i + j*n1;
+
+      xc[ip].re = normf*xtc[j].re;
+      xc[ip].im = normf*xtc[j].im;
+      }
+   }
+
+free(space);
+free(xtc);
+}
+
+FILE *fopfile(char *name,char *mode)
+{
+FILE *fp;
+
+if((fp = fopen(name,mode)) == NULL)
+   {
+   fprintf(stderr,"CAN'T FOPEN FILE = %s, MODE = %s\n", name, mode);
+   exit(-1);
+   }
+return(fp);
+}
+
+void *check_malloc(int len)
+{
+void *ptr;
+
+ptr = (void *) malloc (len);
+
+if(ptr == NULL)
+   {
+   fprintf(stderr,"*****  memory allocation error\n");
+   exit(-1);
+   }
+
+return(ptr);
+}
+
+void resample_slip(float *rslip,int nx,int ny,float dx,float dy,float *slip,int nx0,int ny0,float dx0,float dy0)
+{
+int ix, iy, ip, ip0, ix0, iy0, ix1, iy1;
+float xp1, yp1, xp2, yp2, x1, y1, x2, y2, xa1, ya1, xa2, ya2;
+float area, darea, sum;
+
+area = dx*dy;
+
+for(iy=0;iy<ny;iy++)
+   {
+   yp1 = iy*dy;
+   yp2 = yp1 + dy;
+
+   iy1 = (int)(yp1/dy0);
+
+   for(ix=0;ix<nx;ix++)
+      {
+      xp1 = ix*dx;
+      xp2 = xp1 + dx;
+
+      ix1 = (int)(xp1/dx0);
+
+      y1 = iy1*dy0;
+      y2 = y1 + dy0;
+
+      sum = 0.0;
+      while(y1 < yp2)
+         {
+         if(y1 < yp1)
+            ya1 = yp1;
+         else
+            ya1 = y1;
+
+         if(y2 > yp2)
+            ya2 = yp2;
+         else
+            ya2 = y2;
+
+         iy0 = (int)(y1/dy0);
+         if(iy0 >= 0 && iy0 < ny0)
+            {
+            x1 = ix1*dx0;
+            x2 = x1 + dx0;
+
+            while(x1 < xp2)
+               {
+               if(x1 < xp1)
+                  xa1 = xp1;
+               else
+                  xa1 = x1;
+
+               if(x2 > xp2)
+                  xa2 = xp2;
+               else
+                  xa2 = x2;
+
+               ix0 = (int)(x1/dx0);
+               if(ix0 >= 0 && ix0 < nx0)
+                  {
+                  darea = (xa2-xa1)*(ya2-ya1)/area;
+                  ip0 = ix0 + iy0*nx0;
+                  sum = sum + slip[ip0]*darea;
+                  }
+
+               x1 = x2;
+               x2 = x1 + dx0;
+               }
+            }
+
+         y1 = y2;
+         y2 = y1 + dy0;
+         }
+
+      ip = ix + iy*nx;
+      rslip[ip] = sum;
+      }
+   }
+}
+
+static  long    frandx = 1;
+
+/* frand() returns a uniform distribution of random numbers
+ * in the range -1.0 -> 1.0.
+ */
+double frand(void)
+{
+frandx = (frandx * 1103515245 + 12345) & 0x7fffffff;
+return((double)(frandx)/1073741824.0 - 1.0);
+}
+
+/* sfrand() returns a uniform distribution of random numbers
+ * in the range -1.0 -> 1.0.
+ */
+double sfrand(long *seed)
+{
+*seed = ((*seed) * 1103515245 + 12345) & 0x7fffffff;
+return((double)(*seed)/1073741824.0 - 1.0);
+}
+
+void smooth_slip(float *s1,int nx,int ny,float *stmp)
+{
+int ip, ix, iy;
+float c0, c1, sum;
+
+c0 = 1.0;
+c1 = 0.2;
+
+stmp[0] = (c1*(s1[1] + s1[nx] + s1[nx+1]) + c0*s1[0])/(c0+3*c1);
+for(ix=1;ix<nx-1;ix++)
+   {
+   ip = ix;
+   stmp[ip] =   (c1*(s1[ip-1]                + s1[ip+1])
+	       + c1*(s1[ip+nx-1] + s1[ip+nx] + s1[ip+nx+1])
+	       + c0*s1[ip])/(c0+5*c1);
+   }
+stmp[nx-1] = (c1*(s1[nx-2] + s1[2*nx-1] + s1[2*nx-2]) + c0*s1[nx-1])/(c0+3*c1);
+
+for(iy=1;iy<ny-1;iy++)
+   {
+   ip = iy*nx;
+   stmp[ip] = (c1*(s1[ip-nx] + s1[ip-nx+1])
+	       + c1*(        + s1[ip+1])
+	       + c1*(s1[ip+nx] + s1[ip+nx+1])
+	       + c0*s1[ip])/(c0+5*c1);
+
+   for(ix=1;ix<nx-1;ix++)
+      {
+      ip = ix + iy*nx;
+      stmp[ip] = (c1*(s1[ip-nx-1] + s1[ip-nx] + s1[ip-nx+1])
+	       + c1*(s1[ip-1]                + s1[ip+1])
+	       + c1*(s1[ip+nx-1] + s1[ip+nx] + s1[ip+nx+1])
+	       + c0*s1[ip])/(c0+8*c1);
+      }
+
+   ip = nx-1 + iy*nx;
+   stmp[ip] = (c1*(s1[ip-nx-1] + s1[ip-nx])
+	       + c1*(s1[ip-1]             )
+	       + c1*(s1[ip+nx-1] + s1[ip+nx])
+	       + c0*s1[ip])/(c0+5*c1);
+   }
+
+ip = (ny-1)*nx;
+stmp[ip] = (c1*(s1[ip+1] + s1[ip-nx] + s1[ip-nx+1]) + c0*s1[ip])/(c0+3*c1);
+for(ix=1;ix<nx-1;ix++)
+   {
+   ip = ix + (ny-1)*nx;
+   stmp[ip] = (c1*(s1[ip-nx-1] + s1[ip-nx] + s1[ip-nx+1])
+	       + c1*(s1[ip-1]                + s1[ip+1])
+	       + c0*s1[ip])/(c0+5*c1);
+   }
+ip = nx-1 + (ny-1)*nx;
+stmp[ip] = (c1*(s1[ip-1] + s1[ip-nx] + s1[ip-nx-1]) + c0*s1[ip])/(c0+3*c1);
+
+for(iy=0;iy<ny;iy++)
+   {
+   for(ix=0;ix<nx;ix++)
+      {
+      ip = ix + iy*nx;
+      s1[ip] = stmp[ip];
+      }
+   }
+}
+
+double gaus_rand(float *sigma,float *mean,long *seed)
+{
+double r = 0.0;
+double six = 6.0;
+double one = 1.0;
+double half = 0.5;
+int i;
+
+for(i=0;i<12;i++)
+   r = r + sfrand(seed);
+
+return((double)((r - six)*(*sigma) + *mean));
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/test_rand
===================================================================
(Binary files differ)


Property changes on: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/test_rand
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/test_rand.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/test_rand.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/Resamp/test_rand.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,36 @@
+#include <errno.h>
+#include <fcntl.h>
+#include <math.h>
+#include <stdio.h>
+#include <unistd.h>
+
+#include <sys/file.h>
+#include <sys/procfs.h>
+#include <sys/resource.h>
+#include <sys/signal.h>
+#include <sys/stat.h>
+#include <sys/syscall.h>
+#include <sys/time.h>
+#include <sys/types.h>
+
+double sfrand(long *);
+
+main(int ac,char **av)
+{
+int n, seed;
+
+while(scanf("%d %d",&n,&seed)==2)
+   {
+   while(n--)
+      printf("%13.5e\n",sfrand((long *)&seed));
+   }
+}
+
+/* sfrand() returns a uniform distribution of random numbers
+ * in the range -1.0 -> 1.0.
+ */
+double sfrand(long *seed)
+{
+*seed = ((*seed) * 1103515245 + 12345) & 0x7fffffff;
+return((double)(*seed)/1073741824.0 - 1.0);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/bailey2srf.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/bailey2srf.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/bailey2srf.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,234 @@
+#include "include.h"
+#include "structure.h"
+#include "../../JordanBailey/structure.h"
+#include "function.h"
+#include "../../JordanBailey/function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+FILE *fopfile(), *fpr, *fpw;
+float *stf;
+float x0, y0, z0, dd, vslip, rake;
+float len2, ds0, dd0, dsf, ddf;
+float area, sn, se, cosA, sinA, slon, slat;
+int ig, i, j, k, l, ip, kp, ntot, ntall, nt6;
+char filelist[256], *infile[20], outfile[256];
+char string[1024], filebuf[20*256];
+char stype[32];
+
+struct rob rrm;
+struct standrupformat srf;
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+float rupvel = -1.0;
+float shal_vrup = 1.0;
+float xtsfac;
+float tsfac = 0.0;
+float rvfrac, dt, rt;
+float htol = 0.1;
+double rayp, rupt_rad;
+int it, nt;
+struct velmodel vmod, rvmod;
+char modfile[128];
+
+float cosD, sinD, arg;
+double rperd = 0.017453293;
+
+int nfinestk = 1;
+int nfinedip = 1;
+
+int outbin = 0;
+
+sprintf(srf.version,"1.0");
+sprintf(stype,"rob");
+
+nt = NTMAX;
+
+setpar(ac,av);
+
+getpar("version","s",srf.version);
+
+mstpar("filelist","s",filelist);
+mstpar("outfile","s",outfile);
+
+getpar("outbin","d",&outbin);
+
+mstpar("dt","f",&dt);
+getpar("nt","d",&nt);
+
+getpar("nfinestk","d",&nfinestk);
+getpar("nfinedip","d",&nfinedip);
+
+getpar("stype","s",stype);
+
+getpar("tsfac","f",&tsfac);
+getpar("rupvel","f",&rupvel);
+if(rupvel < 0.0)
+   {
+   mstpar("modfile","s",modfile);
+   mstpar("rvfrac","f",&rvfrac);
+   getpar("shal_vrup","f",&shal_vrup);
+   }
+
+endpar();
+
+fpr = fopfile(filelist,"r");
+
+i = 0;
+infile[0] = filebuf;
+while(fscanf(fpr,"%s",infile[i]) != EOF)
+   {
+   i++;
+   infile[i] = filebuf + i*256;
+   }
+
+fclose(fpr);
+
+sprintf(srf.type,"PLANE");
+
+prect_ptr = &srf.srf_prect;
+prect_ptr->nseg = i;
+prect_ptr->prectseg = (struct srf_prectsegments *)check_malloc(prect_ptr->nseg*sizeof(struct srf_prectsegments));
+prseg_ptr = prect_ptr->prectseg;
+
+srf.srf_apnts.np = 0;
+srf.srf_apnts.apntvals = NULL;
+apnts_ptr = &srf.srf_apnts;
+
+for(ig=0;ig<prect_ptr->nseg;ig++)
+   {
+   fprintf(stderr,"Reading file: %s\n",infile[ig]);
+   read_rob(&rrm,infile[ig],&tsfac);
+
+   prseg_ptr[ig].elon = rrm.elon;
+   prseg_ptr[ig].elat = rrm.elat;
+   prseg_ptr[ig].nstk = rrm.nstk*nfinestk;
+   prseg_ptr[ig].ndip = rrm.ndip*nfinedip;
+   prseg_ptr[ig].flen = rrm.flen;
+   prseg_ptr[ig].fwid = rrm.fwid;
+   prseg_ptr[ig].dlen = rrm.flen/prseg_ptr[ig].nstk;
+   prseg_ptr[ig].dwid = rrm.fwid/prseg_ptr[ig].ndip;
+   prseg_ptr[ig].stk = rrm.stk;
+   prseg_ptr[ig].dip = rrm.dip;
+   prseg_ptr[ig].dtop = rrm.dtop;
+   prseg_ptr[ig].shyp = rrm.shyp;
+   prseg_ptr[ig].dhyp = rrm.dhyp;
+
+   ntot = (prseg_ptr[ig].nstk)*(prseg_ptr[ig].ndip);
+   area = prseg_ptr[ig].dlen*prseg_ptr[ig].dwid*1.0e+10;
+
+   srf.srf_apnts.apntvals = (struct srf_apointvalues *)check_realloc(srf.srf_apnts.apntvals,(apnts_ptr->np+ntot)*sizeof(struct srf_apointvalues));
+   apval_ptr = srf.srf_apnts.apntvals + apnts_ptr->np;
+
+   if(rupvel < 0.0)
+      {
+      read_velmodel(modfile,&vmod);
+      conv2vrup(&vmod,&rvmod,&rrm.dip,&rrm.dtop,&rrm.fwid,&rvfrac,&shal_vrup);
+      }
+
+   ds0 = rrm.flen/rrm.nstk;
+   dd0 = rrm.fwid/rrm.ndip;
+
+   dsf = ds0/nfinestk;
+   ddf = dd0/nfinedip;
+
+   len2 = 0.5*rrm.flen;
+
+   arg = rrm.dip*rperd;
+   cosD = cos(arg);
+   sinD = sin(arg);
+
+   arg = rrm.stk*rperd;
+   cosA = cos(arg);
+   sinA = sin(arg);
+
+   for(j=0;j<rrm.ndip;j++)
+      {
+      for(i=0;i<rrm.nstk;i++)
+         {
+	 kp = i + j*rrm.nstk;
+
+         for(l=0;l<nfinedip;l++)
+            {
+            for(k=0;k<nfinestk;k++)
+               {
+	       ip = k + i*nfinestk + l*prseg_ptr[ig].nstk + j*prseg_ptr[ig].nstk*nfinedip;
+
+               dd = j*dd0 + (l+0.5)*ddf;
+
+               x0 = i*ds0 + (k+0.5)*dsf - len2;
+               y0 = dd*cosD;
+               z0 = rrm.dtop + dd*sinD;
+
+	       apval_ptr[ip].stf1 = (float *)check_malloc(nt*sizeof(float));
+	       stf = apval_ptr[ip].stf1;
+
+	       apval_ptr[ip].dt = dt;
+
+               if(rrm.slip[kp] > MINSLIP)
+                  {
+                  if(strcmp(stype,"rob") == 0)
+                     apval_ptr[ip].nt1 = gen_rob_stf(&rrm,i,j,stf,nt,&dt,&z0);
+
+                  if(strcmp(stype,"brune") == 0)
+                     apval_ptr[ip].nt1 = gen_brune_stf(&rrm.slip[kp],&rrm.trise[kp],stf,nt,&dt,&z0);
+                  }
+               else
+                  apval_ptr[ip].nt1 = 0;
+
+	       if(apval_ptr[ip].nt1)
+	          apval_ptr[ip].stf1 = (float *)check_realloc(apval_ptr[ip].stf1,(apval_ptr[ip].nt1)*sizeof(float));
+	       else
+		  {
+	          free(apval_ptr[ip].stf1);
+		  apval_ptr[ip].stf1 = NULL;
+		  }
+
+               get_rrmpars(&rrm,i,j,&x0,&dd,&rt,&vslip,&rake,&xtsfac);
+
+               if(rt < 0.0)
+                  {
+                  if(rupvel < 0.0)
+                     get_rupt(&rvmod,&htol,&rrm.dhyp,&dd,&rrm.shyp,&x0,&rayp,&rupt_rad,&rt);
+                  else
+                     rt = sqrt((rrm.shyp-x0)*(rrm.shyp-x0)+(rrm.dhyp-dd)*(rrm.dhyp-dd))/rupvel;
+                  rt = rt + xtsfac;
+                  }
+
+               if(rt < 0.0)
+                  rt = 0.0;
+
+               se = x0*sinA + y0*cosA;
+               sn = x0*cosA - y0*sinA;
+	       set_ll(&rrm.elon,&rrm.elat,&slon,&slat,&sn,&se);
+
+	       apval_ptr[ip].lon = slon;
+	       apval_ptr[ip].lat = slat;
+	       apval_ptr[ip].dep = z0;
+	       apval_ptr[ip].stk = prseg_ptr[ig].stk;
+	       apval_ptr[ip].dip = prseg_ptr[ig].dip;
+	       apval_ptr[ip].area = area;
+	       apval_ptr[ip].tinit = rt;
+	       apval_ptr[ip].rake = rrm.rake[kp];
+	       apval_ptr[ip].slip1 = rrm.slip[kp];
+
+	       apval_ptr[ip].slip2 = 0.0;
+	       apval_ptr[ip].nt2 = 0;
+               apval_ptr[ip].stf2 = NULL;
+	       apval_ptr[ip].slip3 = 0.0;
+	       apval_ptr[ip].nt3 = 0;
+               apval_ptr[ip].stf3 = NULL;
+               }
+            }
+         }
+      }
+
+   apnts_ptr->np = apnts_ptr->np + ntot;
+   }
+
+write_srf(&srf,outfile,outbin);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/defs.h
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/defs.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/defs.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,29 @@
+#define         NTMAX              10000
+#define         SOMERVILLE_FLAG    1
+#define         MAI_FLAG           2
+#define         MINSLIP            1.0e-02
+
+#define   DHYPO_FRAC       0.75     /* hypo at 0.75 down-dip width */
+#define   SHYPO_STEP       20.0     /* hypo spacing at 20 km along strike */
+#define   SHYPO_MIN_OFF    1.0      /* hypos start at 1.0 km along strike */
+#define   SLIPS_TO_HYPOS   2    /* no. slip models = 2 times no. of hypos */
+
+#define DEFAULT_VR_TO_VS_FRAC    0.8   /* vrup = 0.8 times local Vs */
+#define DEFAULT_SHAL_VRUP_FRAC   0.8   /* shallow_vrup = 0.8 times back_vrup */
+#define DEFAULT_TSFAC            -0.5  /* tinit is shifted -0.5 at max_slip */
+
+#define RDONLY_FLAGS    O_RDONLY
+#define RDWR_FLAGS      O_RDWR
+#define CROPTR_FLAGS    O_CREAT | O_TRUNC | O_RDWR
+
+#if _FILE_OFFSET_BITS == 64
+
+#undef RDONLY_FLAGS
+#undef RDWR_FLAGS
+#undef CROPTR_FLAGS
+
+#define RDONLY_FLAGS    O_RDONLY | O_LARGEFILE
+#define RDWR_FLAGS      O_RDWR | O_LARGEFILE
+#define CROPTR_FLAGS    O_CREAT | O_TRUNC | O_RDWR | O_LARGEFILE
+
+#endif

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/function.h
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/function.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/function.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,31 @@
+void *check_malloc(size_t);
+void *check_realloc(void *,size_t);
+FILE *fopfile(char*, char*);
+int opfile_ro(char *);
+int opfile(char *);
+int croptrfile(char *);
+int reed(int, void *, int);
+int rite(int, void *, int);
+
+int gen_esg2006_stf(float *,float *,float *,int,float *,float *);
+int gen_2tri_stf(float *,float *,float *,int,float *,float *);
+int gen_brune_stf(float *,float *,float *,int,float *,float *);
+
+void set_ne(float *,float *,float *,float *,float *,float *);
+void set_ll(float *,float *,float *,float *,float *,float *);
+void swap_in_place(int,char *);
+
+void init_plane_srf(struct standrupformat *,float *,float *,int,int,float *,float *,float *,float *,float *,float *,float *,float *,float *);
+void load_slip_srf(struct standrupformat *,struct stfpar *,struct pointsource *);
+void load_rupt_srf(struct standrupformat *,struct pointsource *,float *,float *);
+
+void read_srf(struct standrupformat *,char *,int);
+void write_srf(struct standrupformat *,char *,int);
+
+void free_srf_stf(struct standrupformat *);
+
+int write_xyz(char *,struct standrupformat *,char *,int,int,float *,float *,int,int,int,float *,float *);
+void write_maxsvf(char *,struct standrupformat *,char *,int,float *);
+
+void get_moment(struct standrupformat *,struct velmodel *);
+void read_velmodel(char *,struct velmodel *); 

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/gene2gsf.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/gene2gsf.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/gene2gsf.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,182 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+#define MAXFILE 100
+
+char infilebuf[MAXFILE*256];
+
+main(int ac,char **av)
+{
+FILE *fopfile(), *fpr, *fpw;
+float dx, dy, *len, *wid, *strike, *dip;
+float xlon, xlat, xdep, xrak, xslp, tdel;
+int nfile, i, j, k, ip, nstk_tot, *nstk, *ndip, poff;
+int nseg, ig;
+char filelist[256], *infile[MAXFILE], outfile[256], segmentfile[256];
+char string[1024];
+
+struct generic_slip gslip;
+struct slippars *spar, *spar2;
+
+int reverse_strike = 0;
+
+setpar(ac,av);
+mstpar("filelist","s",filelist);
+mstpar("outfile","s",outfile);
+mstpar("segmentfile","s",segmentfile);
+mstpar("tdel","f",&tdel);
+getpar("reverse_strike","d",&reverse_strike);
+endpar();
+
+fpr = fopfile(filelist,"r");
+nfile = 0;
+while(fgets(string,1024,fpr) != NULL)
+   {
+   if(nfile == MAXFILE)
+      {
+      fprintf(stderr,"MAXFILE=%d exceeded, exiting...\n",MAXFILE);
+      exit(-1);
+      }
+
+   infile[nfile] = infilebuf + nfile*256;
+   sscanf(string,"%s",infile[nfile]);
+   nfile++;
+   }
+fclose(fpr);
+
+fpr = fopfile(segmentfile,"r");
+
+fgets(string,1024,fpr);
+sscanf(string,"%d",&nseg);
+
+len = (float *)check_malloc(nseg*sizeof(float));
+wid = (float *)check_malloc(nseg*sizeof(float));
+strike = (float *)check_malloc(nseg*sizeof(float));
+dip = (float *)check_malloc(nseg*sizeof(float));
+nstk = (int *)check_malloc(nseg*sizeof(int));
+ndip = (int *)check_malloc(nseg*sizeof(int));
+
+nstk_tot = 0;
+for(i=0;i<nseg;i++)
+   {
+   fgets(string,1024,fpr);
+   sscanf(string,"%f %f %d %d %f %f",&len[i],&wid[i],&nstk[i],&ndip[i],&strike[i],&dip[i]);
+
+   nstk_tot = nstk_tot + nstk[i];
+   }
+
+fclose(fpr);
+
+gslip.np = nstk_tot*ndip[0];
+gslip.spar = (struct slippars *)check_malloc(gslip.np*sizeof(struct slippars));
+spar = gslip.spar;
+
+for(ip=0;ip<gslip.np;ip++)
+   {
+   spar[ip].rake = 0.0;
+   spar[ip].slip = -1;
+   spar[ip].tinit = 0.0;
+   }
+
+for(k=0;k<nfile;k++)
+   {
+   fpr = fopfile(infile[k],"r");
+
+   poff = 0;
+   for(ig=0;ig<nseg;ig++)
+      {
+      dx = len[ig]/nstk[ig];
+      dy = wid[ig]/ndip[ig];
+      for(i=0;i<nstk[ig];i++)
+         {
+         for(j=0;j<ndip[ig];j++)
+            {
+            fgets(string,1024,fpr);
+            sscanf(string,"%f %f %f %f %f",&xlon,&xlat,&xdep,&xrak,&xslp);
+
+	    ip = poff + i + j*nstk_tot;
+
+	    spar[ip].lon = xlon;
+	    spar[ip].lat = xlat;
+	    spar[ip].dep = xdep;
+	    spar[ip].ds = dx;
+	    spar[ip].dw = dy;
+	    spar[ip].stk = strike[ig];
+	    spar[ip].dip = dip[ig];
+	    spar[ip].segno = ig;
+
+	    if(xslp > 0.0)
+	       {
+	       if(spar[ip].slip < 0.0)
+	          {
+	          spar[ip].rake = xrak*xslp;
+	          spar[ip].slip = xslp;
+	          spar[ip].tinit = k*tdel;
+	          }
+	       else
+	          {
+	          spar[ip].rake = spar[ip].rake + xrak*xslp;
+	          spar[ip].slip = spar[ip].slip + xslp;
+	          }
+	       }
+            }
+         }
+
+      poff = poff + nstk[ig];
+      }
+
+   fclose(fpr);
+   }
+
+if(reverse_strike)
+   {
+   spar2 = (struct slippars *)check_malloc(gslip.np*sizeof(struct slippars));
+   for(j=0;j<ndip[0];j++)
+      {
+      for(i=0;i<nstk_tot;i++)
+         {
+	 k = i + j*nstk_tot;
+	 ip = ((nstk_tot-1) - i) + j*nstk_tot;
+
+	 spar2[ip].lon = spar[k].lon;
+	 spar2[ip].lat = spar[k].lat;
+	 spar2[ip].dep = spar[k].dep;
+	 spar2[ip].ds = spar[k].ds;
+	 spar2[ip].dw = spar[k].dw;
+	 spar2[ip].stk = spar[k].stk;
+	 spar2[ip].dip = spar[k].dip;
+	 spar2[ip].rake = spar[k].rake;
+	 spar2[ip].slip = spar[k].slip;
+	 spar2[ip].tinit = spar[k].tinit;
+	 spar2[ip].segno = (nseg-1) - spar[k].segno;
+	 }
+      }
+   spar = spar2;
+   }
+
+fpw = fopfile(outfile,"w");
+
+fprintf(fpw,"%d\n",gslip.np);
+
+for(ip=0;ip<gslip.np;ip++)
+   {
+   if(spar[ip].slip > 0.0)
+      spar[ip].rake = spar[ip].rake/spar[ip].slip;
+
+   fprintf(fpw,"%11.5f %11.5f %8.4f %8.4f %8.4f %6.1f %6.1f %6.1f %8.2f %8.3f %3d\n",
+                                                        spar[ip].lon,
+                                                        spar[ip].lat,
+                                                        spar[ip].dep,
+                                                        spar[ip].ds,
+                                                        spar[ip].dw,
+                                                        spar[ip].stk,
+                                                        spar[ip].dip,
+                                                        spar[ip].rake,
+                                                        spar[ip].slip,
+                                                        spar[ip].tinit,
+                                                        spar[ip].segno);
+   }
+
+fclose(fpw);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/generic_slip2srf.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/generic_slip2srf.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/generic_slip2srf.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,347 @@
+#include "include.h"
+#include "structure.h"
+#include "../../JordanBailey/structure.h"
+#include "function.h"
+#include "../../JordanBailey/function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+FILE *fopfile(), *fpr, *fpw;
+float *stf;
+float tzero;
+int i, ip;
+char infile[256], outfile[256];
+char str[1024];
+char stype[32];
+
+struct generic_slip gslip;
+struct slippars *spar;
+struct standrupformat srf;
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+struct slippars *spar2;
+float depmin, dold, avglon, avglat, se, sn;
+int iseg, nseg, nc;
+
+float dmin, dmax, rtfac;
+
+float rperd = 0.017453293;
+
+float dt;
+int it, nt;
+
+int outbin = 0;
+int plane_header = 0;
+
+float risetimedep = 5.0;
+float risetimefac = 2.0;
+float risetime;
+
+sprintf(srf.version,"1.0");
+sprintf(stype,"brune");
+
+nt = NTMAX;
+
+setpar(ac,av);
+
+getpar("version","s",srf.version);
+
+mstpar("infile","s",infile);
+mstpar("outfile","s",outfile);
+getpar("outbin","d",&outbin);
+
+mstpar("dt","f",&dt);
+getpar("nt","d",&nt);
+getpar("stype","s",stype);
+if(strcmp(stype,"esg2006") == 0 || strcmp(stype,"urs") == 0 || strcmp(stype,"ucsb") == 0 || strncmp(stype,"cos",3) == 0)
+   {
+   mstpar("risetime","f",&risetime);
+   }
+
+getpar("risetimefac","f",&risetimefac);
+getpar("risetimedep","f",&risetimedep);
+
+getpar("plane_header","d",&plane_header);
+
+endpar();
+
+fpr = fopfile(infile,"r");
+
+fgets(str,1024,fpr);
+while(strncmp(str,"#",1) == 0)
+   fgets(str,1024,fpr);
+
+sscanf(str,"%d",&gslip.np);
+
+gslip.spar = (struct slippars *)check_malloc(gslip.np*sizeof(struct slippars));
+spar = gslip.spar;
+
+i = 0;
+while(fgets(str,1024,fpr) != NULL)
+   {
+   sscanf(str,"%f %f %f %f %f %f %f %f %f %f %d",&spar[i].lon,
+                                     &spar[i].lat,
+                                     &spar[i].dep,
+                                     &spar[i].ds,
+                                     &spar[i].dw,
+                                     &spar[i].stk,
+                                     &spar[i].dip,
+                                     &spar[i].rake,
+                                     &spar[i].slip,
+                                     &spar[i].tinit,
+                                     &spar[i].segno);
+   i++;
+   }
+
+fclose(fpr);
+
+if(plane_header)
+   {
+   nseg = 0;
+   for(i=0;i<gslip.np;i++)
+      {
+      if(spar[i].segno > nseg)
+         nseg = spar[i].segno;
+      }
+   nseg++;
+
+   spar2 = (struct slippars *)check_malloc(gslip.np*sizeof(struct slippars));
+
+   sprintf(srf.type,"PLANE");
+
+   prect_ptr = &srf.srf_prect;
+   prect_ptr->nseg = nseg;
+   prect_ptr->prectseg = (struct srf_prectsegments *)check_malloc(prect_ptr->nseg*sizeof(struct srf_prectsegments));
+
+   prseg_ptr = prect_ptr->prectseg;
+
+   nc = 0;
+   for(i=0;i<nseg;i++)
+      {
+      avglon = 0.0;
+      avglat = 0.0;
+      prseg_ptr[i].stk = 0.0;
+      prseg_ptr[i].dip = 0.0;
+      prseg_ptr[i].dlen = 0.0;
+      prseg_ptr[i].dwid = 0.0;
+      iseg = 0;
+      dold = -1;
+      prseg_ptr[i].nstk = 0;
+      prseg_ptr[i].ndip = 0;
+
+      depmin = 1.0e+15;
+      for(ip=0;ip<gslip.np;ip++)
+         {
+	 if(spar[ip].segno == i && spar[ip].dep < depmin)
+	    depmin = spar[ip].dep;
+	 }
+
+      for(ip=0;ip<gslip.np;ip++)
+         {
+	 if(spar[ip].segno == i)
+	    {
+	    spar2[nc].lon = spar[ip].lon;
+	    spar2[nc].lat = spar[ip].lat;
+	    spar2[nc].dep = spar[ip].dep;
+	    spar2[nc].ds = spar[ip].ds;
+	    spar2[nc].dw = spar[ip].dw;
+	    spar2[nc].stk = spar[ip].stk;
+	    spar2[nc].dip = spar[ip].dip;
+	    spar2[nc].rake = spar[ip].rake;
+	    spar2[nc].slip = spar[ip].slip;
+	    spar2[nc].tinit = spar[ip].tinit;
+	    spar2[nc].segno = spar[ip].segno;
+
+            if(spar[ip].dep <= 1.01*depmin && spar[ip].dep >= 0.99*depmin)
+	       {
+	       avglon = avglon + spar[ip].lon;
+	       avglat = avglat + spar[ip].lat;
+	       prseg_ptr[i].nstk++;
+	       }
+
+            if(spar[ip].dep != dold)
+	       {
+	       dold = spar[ip].dep;
+	       prseg_ptr[i].ndip++;
+	       }
+
+	    prseg_ptr[i].dlen = prseg_ptr[i].dlen + spar[ip].ds;
+	    prseg_ptr[i].dwid = prseg_ptr[i].dwid + spar[ip].dw;
+
+	    nc++;
+	    iseg++;
+
+	    if(iseg == 1)
+	       {
+	       prseg_ptr[i].stk = spar[ip].stk;
+	       prseg_ptr[i].dip = spar[ip].dip;
+	       }
+	    else
+	       {
+	       if(spar[ip].stk > prseg_ptr[i].stk/(float)(iseg-1) + 90.0)
+	          {
+		  prseg_ptr[i].stk = prseg_ptr[i].stk + spar[ip].stk - 180.0;
+		  prseg_ptr[i].dip = prseg_ptr[i].dip + 180.0 - spar[ip].dip;
+		  }
+	       else if(spar[ip].stk < prseg_ptr[i].stk/(float)(iseg-1) - 90.0)
+	          {
+		  prseg_ptr[i].stk = prseg_ptr[i].stk + spar[ip].stk + 180.0;
+		  prseg_ptr[i].dip = prseg_ptr[i].dip + 180.0 - spar[ip].dip;
+		  }
+	       else
+	          {
+		  prseg_ptr[i].stk = prseg_ptr[i].stk + spar[ip].stk;
+		  prseg_ptr[i].dip = prseg_ptr[i].dip + spar[ip].dip;
+		  }
+	       }
+	    }
+         }
+
+      prseg_ptr[i].stk = prseg_ptr[i].stk/(float)(iseg);
+      prseg_ptr[i].dip = prseg_ptr[i].dip/(float)(iseg);
+
+      if(prseg_ptr[i].dip > 90.0)
+         {
+	 prseg_ptr[i].dip = 180.0 - prseg_ptr[i].dip;
+	 prseg_ptr[i].stk = prseg_ptr[i].stk - 180.0;
+	 }
+
+      while(prseg_ptr[i].stk < 0.0)
+         prseg_ptr[i].stk = prseg_ptr[i].stk + 360.0;
+      while(prseg_ptr[i].stk >= 360.0)
+         prseg_ptr[i].stk = prseg_ptr[i].stk - 360.0;
+
+      prseg_ptr[i].dlen = prseg_ptr[i].dlen/(float)(iseg);
+      prseg_ptr[i].dwid = prseg_ptr[i].dwid/(float)(iseg);
+
+      prseg_ptr[i].flen = prseg_ptr[i].nstk*prseg_ptr[i].dlen;
+      prseg_ptr[i].fwid = prseg_ptr[i].ndip*prseg_ptr[i].dwid;
+
+      prseg_ptr[i].dtop = depmin - 0.5*prseg_ptr[i].dwid*sin(rperd*prseg_ptr[i].dip);
+      if(prseg_ptr[i].dtop < 0.0)
+         prseg_ptr[i].dtop = 0.0;
+
+      avglon = avglon/(float)(prseg_ptr[i].nstk);
+      avglat = avglat/(float)(prseg_ptr[i].nstk);
+      se = -prseg_ptr[i].dwid*cos(rperd*prseg_ptr[i].dip)*cos(rperd*prseg_ptr[i].stk);
+      sn = prseg_ptr[i].dwid*cos(rperd*prseg_ptr[i].dip)*sin(rperd*prseg_ptr[i].stk);
+
+      set_ll(&avglon,&avglat,&prseg_ptr[i].elon,&prseg_ptr[i].elat,&sn,&se);
+
+      prseg_ptr[i].shyp = -999.9;
+      prseg_ptr[i].dhyp = -999.9;
+
+      fprintf(stderr,"%3d: %11.5f %11.5f %2d %2d %10.4f %10.4f %.1f %.1f %10.4f\n",i,prseg_ptr[i].elon,prseg_ptr[i].elat,prseg_ptr[i].nstk,prseg_ptr[i].ndip,prseg_ptr[i].flen,prseg_ptr[i].fwid,prseg_ptr[i].stk,prseg_ptr[i].dip,prseg_ptr[i].dtop);
+      }
+
+   for(ip=0;ip<gslip.np;ip++)
+      {
+      spar[ip].lon = spar2[ip].lon;
+      spar[ip].lat = spar2[ip].lat;
+      spar[ip].dep = spar2[ip].dep;
+      spar[ip].ds = spar2[ip].ds;
+      spar[ip].dw = spar2[ip].dw;
+      spar[ip].stk = spar2[ip].stk;
+      spar[ip].dip = spar2[ip].dip;
+      spar[ip].rake = spar2[ip].rake;
+      spar[ip].slip = spar2[ip].slip;
+      spar[ip].tinit = spar2[ip].tinit;
+      spar[ip].segno = spar2[ip].segno;
+      }
+
+   free(spar2);
+   }
+
+srf.srf_apnts.np = gslip.np;
+srf.srf_apnts.apntvals = (struct srf_apointvalues *)check_malloc((gslip.np)*sizeof(struct srf_apointvalues));
+apval_ptr = srf.srf_apnts.apntvals;
+
+dmin = risetimedep - 1.0;
+dmax = risetimedep + 1.0;
+
+for(ip=0;ip<gslip.np;ip++)
+   {
+   apval_ptr[ip].stf1 = (float *)check_malloc(nt*sizeof(float));
+   stf = apval_ptr[ip].stf1;
+
+   apval_ptr[ip].dt = dt;
+
+   if(spar[ip].slip > MINSLIP)
+      {
+      if(spar[ip].dep >= dmax)
+         rtfac = 1.0;
+      else if(spar[ip].dep < dmax && spar[ip].dep > dmin)
+         rtfac = 1.0 + (risetimefac - 1.0)*(dmax-(spar[ip].dep))/(dmax-dmin);
+      else
+         rtfac = risetimefac;
+
+      if(strcmp(stype,"brune") == 0)
+	 {
+         tzero = 0.1*exp(-1.0)*sqrt(spar[ip].slip)/(1.5); /* assume slip in cm */
+         tzero = 0.1*exp(-1.0)*sqrt(spar[ip].slip)/(1.2); /* assume slip in cm */
+
+	 tzero = tzero*rtfac;
+
+         apval_ptr[ip].nt1 = gen_brune_stf(&spar[ip].slip,&tzero,stf,nt,&dt,&spar[ip].dep);
+	 }
+      else if(strcmp(stype,"urs") == 0)
+         {
+         tzero = rtfac*risetime;
+
+         apval_ptr[ip].nt1 = gen_2tri_stf(&spar[ip].slip,&tzero,stf,nt,&dt,&spar[ip].dep);
+         }
+      else if(strcmp(stype,"esg2006") == 0)
+         {
+         tzero = rtfac*risetime;
+
+         apval_ptr[ip].nt1 = gen_esg2006_stf(&spar[ip].slip,&tzero,stf,nt,&dt,&spar[ip].dep);
+         }
+      else if(strncmp(stype,"cos",3) == 0)
+         {
+         tzero = rtfac*risetime;
+
+         apval_ptr[ip].nt1 = gen_cos_stf(&spar[ip].slip,&tzero,stf,nt,&dt,&spar[ip].dep);
+         }
+      else if(strcmp(stype,"delta") == 0)
+         {
+         apval_ptr[ip].nt1 = 3;
+	 stf[0] = 0.0;
+	 stf[1] = spar[ip].slip/dt;
+	 stf[2] = 0.0;
+         }
+      }
+   else
+      apval_ptr[ip].nt1 = 0;
+
+   if(apval_ptr[ip].nt1)
+      apval_ptr[ip].stf1 = (float *)check_realloc(apval_ptr[ip].stf1,(apval_ptr[ip].nt1)*sizeof(float));
+   else
+      {
+      free(apval_ptr[ip].stf1);
+      apval_ptr[ip].stf1 = NULL;
+      }
+
+   apval_ptr[ip].lon = spar[ip].lon;
+   apval_ptr[ip].lat = spar[ip].lat;
+   apval_ptr[ip].dep = spar[ip].dep;
+   apval_ptr[ip].stk = spar[ip].stk;
+   apval_ptr[ip].dip = spar[ip].dip;
+   apval_ptr[ip].area = spar[ip].ds*spar[ip].dw*1.0e+10;
+   apval_ptr[ip].tinit = spar[ip].tinit;
+   apval_ptr[ip].rake = spar[ip].rake;
+   apval_ptr[ip].slip1 = spar[ip].slip;
+
+   apval_ptr[ip].slip2 = 0.0;
+   apval_ptr[ip].nt2 = 0;
+   apval_ptr[ip].stf2 = NULL;
+   apval_ptr[ip].slip3 = 0.0;
+   apval_ptr[ip].nt3 = 0;
+   apval_ptr[ip].stf3 = NULL;
+   }
+
+write_srf(&srf,outfile,outbin);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/generic_slip2srfGOOD.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/generic_slip2srfGOOD.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/generic_slip2srfGOOD.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,171 @@
+#include "include.h"
+#include "structure.h"
+#include "../../JordanBailey/structure.h"
+#include "function.h"
+#include "../../JordanBailey/function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+FILE *fopfile(), *fpr, *fpw;
+float *stf;
+float area, tzero;
+int i, ip;
+char infile[256], outfile[256];
+char str[1024];
+char stype[32];
+
+struct generic_slip gslip;
+struct slippars *spar;
+struct standrupformat srf;
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+float dt;
+int it, nt;
+
+int outbin = 0;
+int plane_header = 0;
+
+float risetimedep = 0.0;
+float risetimefac = 1.0;
+
+sprintf(srf.version,"1.0");
+sprintf(stype,"brune");
+
+nt = NTMAX;
+
+prect_ptr = &srf.srf_prect;
+prect_ptr->nseg = 1;
+prect_ptr->prectseg = (struct srf_prectsegments *)check_malloc(prect_ptr->nseg*sizeof(struct srf_prectsegments));
+
+prseg_ptr = prect_ptr->prectseg;
+
+setpar(ac,av);
+
+getpar("version","s",srf.version);
+
+mstpar("infile","s",infile);
+mstpar("outfile","s",outfile);
+getpar("outbin","d",&outbin);
+
+mstpar("dt","f",&dt);
+getpar("nt","d",&nt);
+getpar("stype","s",stype);
+
+getpar("risetimefac","f",&risetimefac);
+getpar("risetimedep","f",&risetimedep);
+
+getpar("plane_header","d",&plane_header);
+if(plane_header)
+   {
+   sprintf(srf.type,"PLANE");
+
+   mstpar("elon","f",&prseg_ptr[0].elon);
+   mstpar("elat","f",&prseg_ptr[0].elat);
+   mstpar("nstk","d",&prseg_ptr[0].nstk);
+   mstpar("ndip","d",&prseg_ptr[0].ndip);
+   mstpar("flen","f",&prseg_ptr[0].flen);
+   mstpar("fwid","f",&prseg_ptr[0].fwid);
+
+   prseg_ptr[0].dlen = prseg_ptr[0].flen/prseg_ptr[0].nstk;
+   prseg_ptr[0].dwid = prseg_ptr[0].fwid/prseg_ptr[0].ndip;
+
+   mstpar("stk","f",&prseg_ptr[0].stk);
+   mstpar("dip","f",&prseg_ptr[0].dip);
+   mstpar("dtop","f",&prseg_ptr[0].dtop);
+   mstpar("shyp","f",&prseg_ptr[0].shyp);
+   mstpar("dhyp","f",&prseg_ptr[0].dhyp);
+
+   area = prseg_ptr[0].dlen*prseg_ptr[0].dwid*1.0e+10;
+   }
+else
+   {
+   mstpar("subfault_area","f",&area);
+   area = area*1.0e+10;
+   }
+
+endpar();
+
+fpr = fopfile(infile,"r");
+
+fgets(str,1024,fpr);
+while(strncmp(str,"#",1) == 0)
+   fgets(str,1024,fpr);
+
+sscanf(str,"%d",&gslip.np);
+
+gslip.spar = (struct slippars *)check_malloc(gslip.np*sizeof(struct slippars));
+spar = gslip.spar;
+
+i = 0;
+while(fgets(str,1024,fpr) != NULL)
+   {
+   sscanf(str,"%f %f %f %f %f %f %f %f",&spar[i].lon,
+                                     &spar[i].lat,
+                                     &spar[i].dep,
+                                     &spar[i].stk,
+                                     &spar[i].dip,
+                                     &spar[i].rake,
+                                     &spar[i].slip,
+                                     &spar[i].tinit);
+   i++;
+   }
+
+fclose(fpr);
+
+srf.srf_apnts.np = gslip.np;
+srf.srf_apnts.apntvals = (struct srf_apointvalues *)check_malloc((gslip.np)*sizeof(struct srf_apointvalues));
+apval_ptr = srf.srf_apnts.apntvals;
+
+for(ip=0;ip<gslip.np;ip++)
+   {
+   apval_ptr[ip].stf1 = (float *)check_malloc(nt*sizeof(float));
+   stf = apval_ptr[ip].stf1;
+
+   apval_ptr[ip].dt = dt;
+
+   if(spar[ip].slip > MINSLIP)
+      {
+      if(strcmp(stype,"brune") == 0)
+	 {
+         tzero = 0.025*sqrt(spar[ip].slip);  /* assumes slip in cm */
+	 if(risetimefac > 0.0 && spar[ip].dep < risetimedep)
+	    tzero = tzero*risetimefac;
+
+         apval_ptr[ip].nt1 = gen_brune_stf(&spar[ip].slip,&tzero,stf,nt,&dt,&spar[ip].dep);
+	 }
+      }
+   else
+      apval_ptr[ip].nt1 = 0;
+
+   if(apval_ptr[ip].nt1)
+      apval_ptr[ip].stf1 = (float *)check_realloc(apval_ptr[ip].stf1,(apval_ptr[ip].nt1)*sizeof(float));
+   else
+      {
+      free(apval_ptr[ip].stf1);
+      apval_ptr[ip].stf1 = NULL;
+      }
+
+   apval_ptr[ip].lon = spar[ip].lon;
+   apval_ptr[ip].lat = spar[ip].lat;
+   apval_ptr[ip].dep = spar[ip].dep;
+   apval_ptr[ip].stk = spar[ip].stk;
+   apval_ptr[ip].dip = spar[ip].dip;
+   apval_ptr[ip].area = area;
+   apval_ptr[ip].tinit = spar[ip].tinit;
+   apval_ptr[ip].rake = spar[ip].rake;
+   apval_ptr[ip].slip1 = spar[ip].slip;
+
+   apval_ptr[ip].slip2 = 0.0;
+   apval_ptr[ip].nt2 = 0;
+   apval_ptr[ip].stf2 = NULL;
+   apval_ptr[ip].slip3 = 0.0;
+   apval_ptr[ip].nt3 = 0;
+   apval_ptr[ip].stf3 = NULL;
+   }
+
+write_srf(&srf,outfile,outbin);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/include.h
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/include.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/include.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,15 @@
+#include <errno.h>
+#include <fcntl.h>
+#include <math.h>
+#include <stdio.h>
+#include <stdarg.h>
+#include <unistd.h>
+#include <stdlib.h>
+
+#include <sys/file.h>
+#include <sys/resource.h>
+#include <sys/signal.h>
+#include <sys/stat.h>
+#include <sys/syscall.h>
+#include <sys/time.h>
+#include <sys/types.h>

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/inv2_5x4.stoch
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/inv2_5x4.stoch	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/inv2_5x4.stoch	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,15 @@
+1
+ -120.4360    35.8843     8     4     5.00     4.00
+ 141   89  188     0.00    10.00     7.60
+    12    18    41    48    20    15     8    11
+    14    18    27    32    30    54     8    10
+     4     6     7     7     7     4     2     1
+     4     7    11    14    16    11     5     7
+  1.95  2.55  2.55  2.55  2.55  2.55  2.29  2.29
+  1.95  2.55  2.55  2.55  2.55  2.55  2.04  2.04
+  1.95  2.55  2.55  2.55  2.55  2.55  2.55  2.55
+  1.95  2.55  2.55  2.55  2.55  2.55  2.55  2.55
+  8.55  7.05  5.55  4.15  2.90  2.10  2.45  3.05
+  8.50  6.90  5.30  3.90  2.20  0.90  1.10  3.10
+  8.50  6.90  5.40  3.90  2.55  1.95  2.65  3.35
+  8.60  7.30  5.80  4.40  3.30  2.90  2.95  4.25

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/inv2xyz.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/inv2xyz.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/inv2xyz.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,71 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+FILE *fpr, *fpw, *fopfile();
+int nx, ny, nwin, ix, iy, i;
+float flen, fwid, dx, dy, dt;
+float xp, yp, *tp, slip, rake;
+char infile[256], outfile[256], str[512];
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+
+setpar(ac,av);
+getpar("infile","s",infile);
+getpar("outfile","s",outfile);
+mstpar("flen","f",&flen);
+mstpar("fwid","f",&fwid);
+mstpar("dx","f",&dx);
+mstpar("dy","f",&dy);
+endpar();
+
+nx = (int)(flen/dx + 0.5);
+ny = (int)(fwid/dy + 0.5);
+
+tp = (float *)check_malloc(nx*ny*sizeof(float));
+
+if(strcmp(infile,"stdin") == 0)
+   fpr = stdin;
+else
+   fpr = fopfile(infile,"r");
+
+fgets(str,512,fpr);
+sscanf(str,"%d %*d %*f %*f %f",&nwin,&dt);
+
+for(ix=0;ix<nx;ix++)
+   {
+   for(iy=0;iy<ny;iy++)
+      {
+      tp[ix+iy*nx] = -99;
+      fgets(str,512,fpr);
+      for(i=0;i<nwin;i++)
+         {
+	 fscanf(fpr,"%f %f",&slip,&rake);
+	 if(slip > 0.01 && tp[ix+iy*nx] < 0.0)
+	    tp[ix+iy*nx] = (i-1)*dt;
+	 }
+      fgets(str,512,fpr);  /* get rouge newline */
+      }
+   }
+fclose(fpr);
+
+if(strcmp(outfile,"stdout") == 0)
+   fpw = stdout;
+else
+   fpw = fopfile(outfile,"w");
+
+for(iy=0;iy<ny;iy++)
+   {
+   yp = (iy+0.5)*dy;
+   for(ix=0;ix<nx;ix++)
+      {
+      xp = (ix+0.5)*dx;
+      fprintf(fpw,"%13.5e %13.5e %13.5e\n",xp,yp,tp[ix+iy*nx]);
+      }
+   }
+fclose(fpw);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/iofunc.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/iofunc.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/iofunc.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,64 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+FILE *fopfile(char *name,char *mode)
+{
+FILE *fp;
+
+if((fp = fopen(name,mode)) == NULL)
+   {
+   fprintf(stderr,"CAN'T FOPEN FILE = %s, MODE = %s\n", name, mode);
+   exit(-1);
+   }
+return(fp);
+}
+
+int opfile_ro(char *name)
+{
+int fd;
+if ((fd = open (name, RDONLY_FLAGS, 0444)) == -1)
+   fprintf (stderr, "CAN'T OPEN FILE %s\n", name);
+return (fd);
+}
+
+int opfile(char *name)
+{
+int fd;
+if ((fd = open (name, RDWR_FLAGS, 0664)) == -1)
+   fprintf (stderr, "CAN'T OPEN FILE %s\n", name);
+return (fd);
+}
+
+int croptrfile(char *name)
+{
+int fd;
+if ((fd = open (name, CROPTR_FLAGS, 0664)) == -1)
+   fprintf (stderr, "CAN'T OPEN FILE %s\n", name);
+return (fd);
+}
+
+int reed(int fd, void *pntr, int length)
+{
+int temp;
+if ((temp = read(fd, pntr, length)) < length)
+   {
+   fprintf (stderr, "READ ERROR\n");
+   fprintf (stderr, "%d attempted  %d read\n", length, temp);
+   exit(-1);
+   }
+return(temp);
+}
+
+int rite(int fd, void *pntr, int length)
+{
+int temp;
+if ((temp = write(fd, pntr, length)) < length)
+   {
+   fprintf (stderr, "WRITE ERROR\n");
+   fprintf (stderr, "%d attempted  %d written\n", length, temp);
+   exit(-1);
+   }
+return(temp);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/makefile
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/makefile	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/makefile	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,67 @@
+HEADS = include.h structure.h function.h defs.h
+OBJS = iofunc.o misc.o srf_subs.o
+GENRAND_OBJS = ../GenRand/ruptime.o
+BAILEY_OBJS = ../../JordanBailey/rob_rupm.o \
+              ../../JordanBailey/ruptime.o \
+              ../../JordanBailey/stf_subs.o
+
+GETPAR = ../../../Getpar/getpar/lib
+
+LIBS = -lm ${GETPAR}/libget.a
+LDLIBS = $(OBJS) $(LIBS)
+
+LF_FLAGS = -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
+
+UFLAGS = -O3
+
+include ../../../Compilers.mk
+CC = $(MY_CC)
+CFLAGS = $(UFLAGS) $(LF_FLAGS)
+
+##### make options
+
+all: $(OBJS)
+
+testget : testget.o
+	$(CC) -o testget testget.o ${LIBS}
+
+inv2xyz : inv2xyz.o ${OBJS}
+	$(CC) -o inv2xyz inv2xyz.o ${LDLIBS}
+
+srf2moment : srf2moment.o ${OBJS} ${BAILEY_OBJS}
+	$(CC) -o srf2moment srf2moment.o ${LDLIBS} ${BAILEY_OBJS}
+
+srf2stoch : srf2stoch.o ${OBJS}
+	$(CC) -o srf2stoch srf2stoch.o ${LDLIBS}
+
+srf_const-rv : srf_const-rv.o ${OBJS} ${GENRAND_OBJS}
+	$(CC) -o srf_const-rv srf_const-rv.o ${LDLIBS} ${GENRAND_OBJS}
+
+srf2svf : srf2svf.o ${OBJS}
+	$(CC) -o srf2svf srf2svf.o ${LDLIBS}
+
+stoch2xyz : stoch2xyz.o ${OBJS}
+	$(CC) -o stoch2xyz stoch2xyz.o ${LDLIBS}
+
+srf2xyz : srf2xyz.o ${OBJS}
+	$(CC) -o srf2xyz srf2xyz.o ${LDLIBS}
+
+gene2gsf : gene2gsf.o ${OBJS} ${BAILEY_OBJS}
+	$(CC) -o gene2gsf gene2gsf.o ${LDLIBS} ${BAILEY_OBJS}
+
+generic_slip2srf : generic_slip2srf.o ${OBJS} ${BAILEY_OBJS}
+	$(CC) -o generic_slip2srf generic_slip2srf.o ${LDLIBS} ${BAILEY_OBJS}
+
+bailey2srf : bailey2srf.o ${OBJS} ${BAILEY_OBJS}
+	$(CC) -o bailey2srf bailey2srf.o ${LDLIBS} ${BAILEY_OBJS}
+
+srf_resamp : srf_resamp.o ${OBJS}
+	$(CC) -o srf_resamp srf_resamp.o ${LDLIBS}
+
+srf_rotate-rake : srf_rotate-rake.o ${OBJS}
+	$(CC) -o srf_rotate-rake srf_rotate-rake.o ${LDLIBS}
+
+$(OBJS) : $(HEADS)
+
+clean :
+	-rm -f $(OBJS)

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/misc.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/misc.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/misc.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,521 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+void *check_malloc(size_t len)
+{
+void *ptr;
+
+ptr = (void *) malloc (len);
+
+if(ptr == NULL)
+   {
+   fprintf(stderr,"*****  memory allocation error\n");
+   exit(-1);
+   }
+
+return(ptr);
+}
+
+void *check_realloc(void *ptr,size_t len)
+{
+ptr = (char *) realloc (ptr,len);
+
+if(ptr == NULL)
+   {
+   fprintf(stderr,"*****  memory reallocation error\n");
+   exit(-1);
+   }
+
+return(ptr);
+}
+
+static  long    frandx = 1;
+
+/* frand() returns a uniform distribution of random numbers
+ * in the range -1.0 -> 1.0.
+ */
+double frand(void)
+{
+frandx = (frandx * 1103515245 + 12345) & 0x7fffffff;
+return((double)(frandx)/1073741824.0 - 1.0);
+}
+
+/* sfrand() returns a uniform distribution of random numbers
+ * in the range -1.0 -> 1.0.
+ */
+double sfrand(long *seed)
+{
+*seed = ((*seed) * 1103515245 + 12345) & 0x7fffffff;
+return((double)(*seed)/1073741824.0 - 1.0);
+}
+
+zapit(s,n)
+float *s;
+int n;
+{
+while(n--)
+   {
+   s[0] = 0.0;
+   s++;
+   }
+}
+
+void set_ne(float *elon,float *elat,float *slon,float *slat,float *sn,float *se)
+{
+float kperd_n, kperd_e;
+double e2, den, g2, lat0;
+float cosA, sinA;
+
+double rperd = 0.017453293;
+double radius = 6378.139;
+double f = 298.256;
+
+f = 1.0/f;
+e2 = 2.0*f - f*f;
+g2 = e2/((1.0 - f)*(1.0 - f));
+
+lat0 = atan((1.0 - f)*tan((*elat)*rperd));
+
+cosA = cos(lat0);
+sinA = sin(lat0);
+
+den = sqrt(1.0/(1.0 + g2*sinA*sinA));
+kperd_e = rperd*radius*cosA*den;
+kperd_n = rperd*radius*(sqrt(1.0 + g2*sinA*sinA*(2.0 + g2)))*den*den*den;
+
+*sn = ((*slat) - (*elat))*kperd_n;
+*se = ((*slon) - (*elon))*kperd_e;
+}
+
+void set_ll(float *elon,float *elat,float *slon,float *slat,float *sn,float *se)
+{
+float kperd_n, kperd_e;
+double e2, den, g2, lat0;
+float cosA, sinA;
+
+double rperd = 0.017453293;
+double radius = 6378.139;
+double f = 298.256;
+
+f = 1.0/f;
+e2 = 2.0*f - f*f;
+g2 = e2/((1.0 - f)*(1.0 - f));
+
+lat0 = atan((1.0 - f)*tan((*elat)*rperd));
+
+cosA = cos(lat0);
+sinA = sin(lat0);
+
+den = sqrt(1.0/(1.0 + g2*sinA*sinA));
+kperd_e = rperd*radius*cosA*den;
+kperd_n = rperd*radius*(sqrt(1.0 + g2*sinA*sinA*(2.0 + g2)))*den*den*den;
+
+*slat = (*sn)/kperd_n + *elat;
+*slon = (*se)/kperd_e + *elon;
+}
+
+void swap_in_place(int n,char *cbuf)
+{
+char cv;
+
+while(n--)
+   {
+   cv = cbuf[0];
+   cbuf[0] = cbuf[3];
+   cbuf[3] = cv;
+
+   cv = cbuf[1];
+   cbuf[1] = cbuf[2];
+   cbuf[2] = cv;
+
+   cbuf = cbuf + 4;
+   }
+}
+
+int write_xyz(char *file,struct standrupformat *srf,char *type,int ig,int calc_xy,float *xoff,float *yoff,int tsstr,int tsend,int tsinc,float *svmin,float *slipmin)
+{
+FILE *fpw, *fopfile();
+struct srf_prectsegments *prseg_ptr;
+struct srf_apointvalues *apval_ptr;
+float elon, elat;
+float sn, se, arg;
+float len, wid, dx, dy, stk, dip, dtop, shypo, dhypo;
+float len2, slip, xx, yy, outval;
+float sv, svmax, *stf1, *stf2, *stf3;
+int it, maxnt, ts, itdel;
+int nx, ny;
+int nt1, nt2, nt3;
+int i, j, k, npskip;
+int igst, ignd, igp;
+int nd, place;
+char str[512], frmt[32];
+
+float rperd = 0.017453293;
+
+if(strcmp(srf[0].type,"PLANE") != 0 || ig >= srf[0].srf_prect.nseg)
+   return(-99);
+
+if(ig < 0)
+   {
+   igst = 0;
+   ignd = srf[0].srf_prect.nseg;
+   }
+else
+   {
+   igst = ig;
+   ignd = igst + 1;
+   }
+
+if(strncmp(type,"rupture",7) == 0)
+   {
+   if(tsstr < 0)
+      tsstr = 0;
+   if(tsend < 0)
+      {
+      apval_ptr = srf[0].srf_apnts.apntvals;
+      for(k=0;k<srf[0].srf_apnts.np;k++)
+         {
+	 itdel = (int)(apval_ptr[k].tinit/apval_ptr[k].dt + 0.5);
+
+	 if(tsend < itdel + apval_ptr[k].nt1)
+            tsend = itdel + apval_ptr[k].nt1;
+	 if(tsend < itdel + apval_ptr[k].nt2)
+            tsend = itdel + apval_ptr[k].nt2;
+	 if(tsend < itdel + apval_ptr[k].nt3)
+            tsend = itdel + apval_ptr[k].nt3;
+	 }
+      }
+
+   nd = 0;
+   place = 1;
+   while((tsend-tsstr)/tsinc > (place-1))
+      {
+      place = place*10;
+      nd++;
+      }
+
+   sprintf(frmt,"%s%%.%dd",file,nd);
+   }
+else
+   {
+   tsstr = 0;
+   tsend = 1;
+   }
+
+for(ts=tsstr;ts<tsend;ts=ts+tsinc)
+   {
+   if(strcmp(file,"stdout") == 0)
+      fpw = stdout;
+   else
+      {
+      if(strncmp(type,"rupture",7) == 0)
+         {
+         sprintf(str,frmt,(ts-tsstr)/tsinc);
+         fpw = fopfile(str,"w");
+         }
+      else
+         fpw = fopfile(file,"w");
+      }
+
+   for(igp=igst;igp<ignd;igp++)
+      {
+      prseg_ptr = srf[0].srf_prect.prectseg;
+
+      elon = prseg_ptr[igp].elon;
+      elat = prseg_ptr[igp].elat;
+      nx = prseg_ptr[igp].nstk;
+      ny = prseg_ptr[igp].ndip;
+      len = prseg_ptr[igp].flen;
+      wid = prseg_ptr[igp].fwid;
+      stk = prseg_ptr[igp].stk;
+      dip = prseg_ptr[igp].dip;
+      dtop = prseg_ptr[igp].dtop;
+      shypo = prseg_ptr[igp].shyp;
+      dhypo = prseg_ptr[igp].dhyp;
+
+      len2 = 0.5*len;
+      dx = len/(float)(nx);
+      dy = wid/(float)(ny);
+
+      npskip = 0;
+      for(i=0;i<igp;i++)
+         npskip = npskip + prseg_ptr[i].nstk*prseg_ptr[i].ndip;
+
+      apval_ptr = srf[0].srf_apnts.apntvals + npskip;
+
+      for(j=0;j<ny;j++)
+         {
+         yy = (j+0.5)*dy;
+         for(i=0;i<nx;i++)
+            {
+            xx = (i+0.5)*dx;
+	    k = i + j*nx;
+
+            if(calc_xy)
+               {
+               set_ne(&(prseg_ptr[igp].elon),&(prseg_ptr[igp].elat),&(apval_ptr[k].lon),&(apval_ptr[k].lat),&sn,&se);
+
+               arg = (apval_ptr[k].stk)*rperd;
+               xx = se*sin(arg) + sn*cos(arg) + 0.5*prseg_ptr[igp].flen;
+
+               arg = (apval_ptr[k].dip)*rperd;
+               yy = ((apval_ptr[k].dep)-(prseg_ptr[igp].dtop))/sin(arg);
+               }
+
+	    xx = xx + *xoff;
+	    yy = yy + *yoff;
+
+            if(strncmp(type,"slip",4) == 0)
+               {
+	       slip = sqrt(apval_ptr[k].slip1*apval_ptr[k].slip1 +
+	                apval_ptr[k].slip2*apval_ptr[k].slip2 +
+	                apval_ptr[k].slip3*apval_ptr[k].slip3);
+
+               outval = slip;
+	       }
+            else if(strncmp(type,"velocity",8) == 0)
+               {
+               stf1 = apval_ptr[k].stf1;
+               stf2 = apval_ptr[k].stf2;
+               stf3 = apval_ptr[k].stf3;
+
+	       maxnt = apval_ptr[k].nt1;
+	       if(apval_ptr[k].nt2 > maxnt)
+	          maxnt = apval_ptr[k].nt2;
+	       if(apval_ptr[k].nt3 > maxnt)
+	          maxnt = apval_ptr[k].nt3;
+
+	       svmax = 0.0;
+               for(it=0;it<maxnt;it++)
+	          {
+	          sv = 0.0;
+	          if(it < apval_ptr[k].nt1)
+	             sv = sv + stf1[it]*stf1[it];
+	          if(it < apval_ptr[k].nt2)
+	             sv = sv + stf2[it]*stf2[it];
+	          if(it < apval_ptr[k].nt3)
+	             sv = sv + stf3[it]*stf3[it];
+
+                  sv = sqrt(sv);
+	          if(sv > svmax)
+	             svmax = sv;
+	          }
+
+               outval = svmax;
+	       }
+            else if(strncmp(type,"rupture",7) == 0)
+               {
+               stf1 = apval_ptr[k].stf1;
+               stf2 = apval_ptr[k].stf2;
+               stf3 = apval_ptr[k].stf3;
+
+	       nt1 = apval_ptr[k].nt1;
+	       while(stf1[nt1-1] < *svmin && nt1 > 0)
+	          nt1--;
+
+	       nt2 = apval_ptr[k].nt2;
+	       while(stf2[nt2-1] < *svmin && nt2 > 0)
+	          nt2--;
+
+	       nt3 = apval_ptr[k].nt3;
+	       while(stf3[nt3-1] < *svmin && nt3 > 0)
+	          nt3--;
+
+	       itdel = ts - (int)(apval_ptr[k].tinit/apval_ptr[k].dt + 0.5);
+
+	       if(itdel < 1)
+	          sv = 0.0;
+	       else if(itdel < nt1 || itdel < nt2 || itdel < nt3)
+	          {
+	          sv = 0.0;
+	          if(itdel < nt1)
+	             sv = sv + stf1[itdel]*stf1[itdel];
+	          if(itdel < nt2)
+	             sv = sv + stf2[itdel]*stf2[itdel];
+	          if(itdel < nt3)
+	             sv = sv + stf3[itdel]*stf3[itdel];
+
+                  sv = sqrt(sv);
+		  }
+	       else
+	          {
+	          sv = -1.0*sqrt(apval_ptr[k].slip1*apval_ptr[k].slip1 +
+	                         apval_ptr[k].slip2*apval_ptr[k].slip2 +
+	                         apval_ptr[k].slip3*apval_ptr[k].slip3);
+
+		  if(sv > -(*slipmin))
+		     sv = -(*slipmin);
+		  }
+
+               outval = sv;
+	       }
+
+            else if(strncmp(type,"rake",4) == 0)
+               outval = apval_ptr[k].rake;
+
+            else if(strncmp(type,"tinit",5) == 0)
+               outval = apval_ptr[k].tinit;
+
+            fprintf(fpw,"%12.5e %12.5e %12.5e\n",xx,yy,outval);
+            }
+         }
+
+      *xoff = *xoff + len;
+      }
+   fclose(fpw);
+   }
+}
+
+void write_maxsvf(char *file,struct standrupformat *srf,char *type,int ig,float *maxslip)
+{
+FILE *fpw, *fopfile();
+struct srf_prectsegments *prseg_ptr;
+struct srf_apointvalues *apval_ptr;
+float elon, elat;
+float sn, se, arg;
+float len, wid, dx, dy, stk, dip, dtop, shypo, dhypo;
+float len2, slip, xx, yy;
+float *stf;
+int it, kp, nx, ny;
+int i, j, k, npskip, pflag;
+
+float rperd = 0.017453293;
+
+if(strcmp(srf[0].type,"PLANE") == 0 && ig < srf[0].srf_prect.nseg)
+   {
+   prseg_ptr = srf[0].srf_prect.prectseg;
+
+   elon = prseg_ptr[ig].elon;
+   elat = prseg_ptr[ig].elat;
+   nx = prseg_ptr[ig].nstk;
+   ny = prseg_ptr[ig].ndip;
+   len = prseg_ptr[ig].flen;
+   wid = prseg_ptr[ig].fwid;
+   stk = prseg_ptr[ig].stk;
+   dip = prseg_ptr[ig].dip;
+   dtop = prseg_ptr[ig].dtop;
+   shypo = prseg_ptr[ig].shyp;
+   dhypo = prseg_ptr[ig].dhyp;
+
+   len2 = 0.5*len;
+   dx = len/(float)(nx);
+   dy = wid/(float)(ny);
+
+   npskip = 0;
+   for(i=0;i<ig;i++)
+      npskip = npskip + prseg_ptr[i].nstk*prseg_ptr[i].ndip;
+
+   pflag = 1;
+   }
+else
+   {
+   elon = -99;
+   elat = -99;
+   pflag = 0;
+   }
+
+*maxslip = 0.0;
+if(pflag)
+   {
+   apval_ptr = srf[0].srf_apnts.apntvals + npskip;
+
+   for(j=0;j<ny;j++)
+      {
+      for(i=0;i<nx;i++)
+         {
+	 k = i + j*nx;
+
+         if(strncmp(type,"slip",4) == 0)
+            {
+	    slip = sqrt(apval_ptr[k].slip1*apval_ptr[k].slip1 +
+	             apval_ptr[k].slip2*apval_ptr[k].slip2 +
+	             apval_ptr[k].slip3*apval_ptr[k].slip3);
+
+	    if(slip > *maxslip)
+	       {
+	       *maxslip = slip;
+	       kp = k;
+	       }
+	    }
+         }
+      }
+
+   if(strcmp(file,"stdout") == 0)
+      fpw = stdout;
+   else
+      fpw = fopfile(file,"w");
+
+   fprintf(fpw,"svf svf\n");
+   fprintf(fpw,"%d %13.5e\n",apval_ptr[kp].nt1,apval_ptr[kp].dt);
+
+   stf = apval_ptr[kp].stf1;
+   for(it=0;it<apval_ptr[kp].nt1;it++)
+      fprintf(fpw,"%13.5e\n",stf[it]);
+
+   fclose(fpw);
+   }
+}
+
+void Xread_velmodel(char *vfile,struct velmodel *vm)
+{
+FILE *fpr, *fopfile();
+int i;
+char str[512];
+
+fpr = fopfile(vfile,"r");
+
+fgets(str,512,fpr);
+sscanf(str,"%d",&vm->nlay);
+
+vm->vp = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->vs = (double *)check_malloc(vm->nlay*sizeof(double));
+vm->den = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->th = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->dep = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->mu = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->invb2 = (double *)check_malloc(vm->nlay*sizeof(double));
+
+for(i=0;i<vm->nlay;i++)
+   {
+   fgets(str,512,fpr);
+   sscanf(str,"%f %f %lf %f",&vm->th[i],&vm->vp[i],&vm->vs[i],&vm->den[i]);
+
+   if(i==0)
+      vm->dep[i] = vm->th[i];
+   else
+      vm->dep[i] = vm->dep[i-1] + vm->th[i];
+
+   vm->mu[i] = vm->vs[i]*vm->vs[i]*vm->den[i]*1.0e+10;  /* in CMS units */
+   }
+fclose(fpr);
+}
+
+void get_moment(struct standrupformat *srf,struct velmodel *vm)
+{
+struct srf_prectsegments *prseg_ptr;
+struct srf_apointvalues *apval_ptr;
+float tmom, slip;
+int np;
+int j, k;
+
+tmom = 0.0;
+np = srf[0].srf_apnts.np;
+apval_ptr = srf[0].srf_apnts.apntvals;
+
+for(k=0;k<np;k++)
+   {
+   slip = sqrt(apval_ptr[k].slip1*apval_ptr[k].slip1 +
+	             apval_ptr[k].slip2*apval_ptr[k].slip2 +
+	             apval_ptr[k].slip3*apval_ptr[k].slip3);
+
+   j = 0;
+   while(vm->dep[j] < apval_ptr[k].dep)
+      j++;
+
+   tmom = tmom + slip*apval_ptr[k].area*vm->mu[j];
+   }
+
+fprintf(stderr,"Total moment= %13.5e\n",tmom);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2moment.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2moment.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2moment.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,25 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+char infile[256], velfile[256];
+
+struct standrupformat srf;
+struct velmodel vmod;
+
+int inbin = 0;
+
+sprintf(infile,"stdin");
+
+setpar(ac,av);
+getpar("infile","s",infile);
+mstpar("velfile","s",velfile);
+endpar();
+
+read_velmodel(velfile,&vmod);
+read_srf(&srf,infile,inbin);
+get_moment(&srf,&vmod);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2stoch.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2stoch.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2stoch.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,280 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+#define         RPERD           0.017453293
+#define         DPERR           57.29577951
+
+main(int ac,char **av)
+{
+FILE *fopfile(), *fpr, *fpw;
+float dx, dy, len, wid, xp, yp;
+float dtop, strike, dip;
+float rr, ss, tt, tl, ravg, savg, *slip, *trise, *tinit, *sp, *tr, *ti;
+float s1, s2, xx, yy, rake, cosA, sinA, sum;
+int i, is, id, ip, nstk, ndip, nseg;
+int ix, iy, j, k, m, kp, noff;
+int nx, ny, nxdiv, nydiv, nxsum, nysum;
+float shypo, dhypo, elon, elat, fac;
+char infile[256], outfile[256];
+char string[1024];
+
+struct standrupformat srf;
+int inbin = 0;
+
+float avgstk = -1.0e+15;
+int revstk;
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+
+setpar(ac,av);
+getpar("infile","s",infile);
+getpar("outfile","s",outfile);
+mstpar("dx","f",&dx);
+mstpar("dy","f",&dy);
+getpar("inbin","d",&inbin);
+getpar("avgstk","f",&avgstk);
+endpar();
+
+if(avgstk > -1.0e+14)
+   {
+   while(avgstk >= 360.0)
+      avgstk = avgstk - 360.0;
+   while(avgstk < 0.0)
+      avgstk = avgstk + 360.0;
+   }
+
+read_srf(&srf,infile,inbin);
+
+if(strcmp(outfile,"stdout") == 0)
+   fpw = stdout;
+else
+   fpw = fopfile(outfile,"w");
+
+fprintf(fpw,"%d\n",srf.srf_prect.nseg);
+
+noff = 0;
+for(i=0;i<srf.srf_prect.nseg;i++)
+   {
+   elon = srf.srf_prect.prectseg[i].elon;
+   elat = srf.srf_prect.prectseg[i].elat;
+   nstk = srf.srf_prect.prectseg[i].nstk;
+   ndip = srf.srf_prect.prectseg[i].ndip;
+   len = srf.srf_prect.prectseg[i].flen;
+   wid = srf.srf_prect.prectseg[i].fwid;
+
+   strike = srf.srf_prect.prectseg[i].stk;
+   dip = srf.srf_prect.prectseg[i].dip;
+   dtop = srf.srf_prect.prectseg[i].dtop;
+   shypo = srf.srf_prect.prectseg[i].shyp;
+   dhypo = srf.srf_prect.prectseg[i].dhyp;
+
+   while(strike >= 360.0)
+      strike = strike - 360.0;
+   while(strike < 0.0)
+      strike = strike + 360.0;
+
+   nx = (len/dx + 0.5);
+   if(nx > nstk)
+      {
+      nx = nstk;
+      dx = len/nx;
+      }
+
+   nxdiv = 1;
+   while((nstk*nxdiv)%nx)
+      nxdiv++;
+
+   nxsum = (nstk*nxdiv)/nx;
+
+   ny = (wid/dy + 0.5);
+   if(ny > ndip)
+      {
+      ny = ndip;
+      dy = wid/ny;
+      }
+
+   nydiv = 1;
+   while((ndip*nydiv)%ny)
+      nydiv++;
+
+   nysum = (ndip*nydiv)/ny;
+
+   fprintf(stderr,"seg= %d\n",i);
+   fprintf(stderr,"nstk= %d nx= %d nxdiv= %d nxsum= %d\n",nstk,nx,nxdiv,nxsum);
+   fprintf(stderr,"ndip= %d ny= %d nydiv= %d nysum= %d\n",ndip,ny,nydiv,nysum);
+
+   slip = (float *) check_malloc (nxdiv*nydiv*nstk*ndip*sizeof(float));
+   trise = (float *) check_malloc (nxdiv*nydiv*nstk*ndip*sizeof(float));
+   tinit = (float *) check_malloc (nxdiv*nydiv*nstk*ndip*sizeof(float));
+   sp = (float *) check_malloc (nx*ny*sizeof(float));
+   tr = (float *) check_malloc (nx*ny*sizeof(float));
+   ti = (float *) check_malloc (nx*ny*sizeof(float));
+
+   savg = 0.0;
+   ravg = 0.0;
+   for(id=0;id<ndip;id++)
+      {
+      for(is=0;is<nstk;is++)
+         {
+	 kp = noff + is + id*nstk;
+
+	 tt = srf.srf_apnts.apntvals[kp].tinit;
+	 s1 = srf.srf_apnts.apntvals[kp].slip1;
+	 s2 = srf.srf_apnts.apntvals[kp].slip2;
+
+	 rake = srf.srf_apnts.apntvals[kp].rake;
+
+	 cosA = cos(rake*RPERD);
+	 sinA = sin(rake*RPERD);
+
+	 xx = -s2*sinA + s1*cosA;
+	 yy =  s2*cosA + s1*sinA;
+
+	 ss = sqrt(xx*xx + yy*yy);
+
+	 rr = 90;
+	 if(yy < 0.0)
+	    rr = 270;
+
+	 if(xx != 0.0)
+	    {
+	    rr = DPERR*atan(yy/xx);
+	    if(xx < 0.0)
+	       rr = rr + 180;
+	    }
+
+	 while(rr < 0.0)
+	    rr = rr + 360.0;
+	 while(rr > 360.0)
+	    rr = rr - 360.0;
+
+	 tl = (srf.srf_apnts.apntvals[kp].dt)*(srf.srf_apnts.apntvals[kp].nt1 - 1);
+	 if(srf.srf_apnts.apntvals[kp].nt2 > srf.srf_apnts.apntvals[kp].nt1)
+	    tl = (srf.srf_apnts.apntvals[kp].dt)*(srf.srf_apnts.apntvals[kp].nt2 - 1);
+	 if(tl < 0.0)
+	    tl = 0.0;
+	 for(k=0;k<nydiv;k++)
+	    {
+	    for(j=0;j<nxdiv;j++)
+	       {
+	       ip = is*nxdiv + j + (id*nydiv + k)*nstk*nxdiv;
+
+	       slip[ip] = ss;
+	       trise[ip] = tl;
+	       tinit[ip] = tt;
+	       }
+	    }
+
+         ravg = ravg + rr*ss;
+         savg = savg + ss;
+         }
+      }
+
+   ravg = ravg/savg;
+   savg = savg/(nstk*ndip);
+
+   fac = 1.0/(float)(nxsum*nysum);
+
+   for(iy=0;iy<ny;iy++)
+      {
+      for(ix=0;ix<nx;ix++)
+         {
+	 ip = ix + iy*nx;
+
+         sp[ip] = 0.0;
+         tr[ip] = 0.0;
+         ti[ip] = 0.0;
+	 sum = 0.0;
+	 for(k=0;k<nysum;k++)
+	    {
+	    for(j=0;j<nxsum;j++)
+	       {
+	       m = ix*nxsum + j + (iy*nysum + k)*nx*nxsum;
+
+	       sp[ip] = sp[ip] + slip[m];
+	       ti[ip] = ti[ip] + tinit[m];
+	       tr[ip] = tr[ip] + trise[m]*slip[m];
+	       sum = sum + slip[m];
+	       }
+	    }
+
+         sp[ip] = sp[ip]*fac;
+         ti[ip] = ti[ip]*fac;
+
+	 if(sum > 0.0)
+            tr[ip] = tr[ip]/sum;
+	 else
+            tr[ip] = 1.0e-05;
+         }
+      }
+
+   fprintf(fpw,"%10.4f %10.4f %5d %5d %8.2f %8.2f\n",elon,elat,nx,ny,dx,dy);
+   fprintf(fpw,"%4.0f %4.0f %4.0f %8.2f %8.2f %8.2f\n",strike,dip,ravg,dtop,shypo,dhypo);
+
+   revstk = 0;
+   if(avgstk > -1.0e+14 && (strike > avgstk + 90.0 || strike < avgstk - 90.0))
+      revstk = 1;
+
+   for(iy=0;iy<ny;iy++)
+      {
+      if(revstk)
+         {
+         for(ix=nx-1;ix>=0;ix--)
+            fprintf(fpw," %5.0f",sp[ix + iy*nx]);
+	 }
+      else
+         {
+         for(ix=0;ix<nx;ix++)
+            fprintf(fpw," %5.0f",sp[ix + iy*nx]);
+	 }
+
+      fprintf(fpw,"\n");
+      }
+
+   for(iy=0;iy<ny;iy++)
+      {
+      if(revstk)
+         {
+         for(ix=nx-1;ix>=0;ix--)
+            fprintf(fpw," %5.2f",tr[ix + iy*nx]);
+	 }
+      else
+         {
+         for(ix=0;ix<nx;ix++)
+            fprintf(fpw," %5.2f",tr[ix + iy*nx]);
+	 }
+
+      fprintf(fpw,"\n");
+      }
+
+   for(iy=0;iy<ny;iy++)
+      {
+      if(revstk)
+         {
+         for(ix=nx-1;ix>=0;ix--)
+            fprintf(fpw," %5.2f",ti[ix + iy*nx]);
+	 }
+      else
+         {
+         for(ix=0;ix<nx;ix++)
+            fprintf(fpw," %5.2f",ti[ix + iy*nx]);
+	 }
+
+      fprintf(fpw,"\n");
+      }
+
+   free(slip);
+   free(trise);
+   free(tinit);
+   free(sp);
+   free(tr);
+   free(ti);
+
+   noff = noff + nstk*ndip;
+   }
+
+fclose(fpw);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2svf.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2svf.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2svf.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,32 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+int nseg;
+char infile[256], type[64], outfile[256];
+
+struct standrupformat srf;
+
+int inbin = 0;
+float maxslip;
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+sprintf(type,"slip");
+nseg = 0;
+
+setpar(ac,av);
+getpar("infile","s",infile);
+getpar("outfile","s",outfile);
+getpar("type","s",type);
+getpar("nseg","d",&nseg);
+getpar("inbin","d",&inbin);
+endpar();
+
+read_srf(&srf,infile,inbin);
+write_maxsvf(outfile,&srf,type,nseg,&maxslip);
+fprintf(stderr,"maxslip= %f\n",maxslip);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2xyz.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2xyz.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf2xyz.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,49 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+int nseg;
+char infile[256], type[64], outfile[256];
+
+struct standrupformat srf;
+
+int inbin = 0;
+int calc_xy = 0;
+
+float xoff = 0.0;
+float yoff = 0.0;
+
+float svmin = 0.0;
+float slipmin = -1.0;
+
+int tsstr = 0;
+int tsend = -1;
+int tsinc = 1;
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+sprintf(type,"slip");
+nseg = 0;
+
+setpar(ac,av);
+getpar("infile","s",infile);
+getpar("outfile","s",outfile);
+getpar("type","s",type);
+getpar("nseg","d",&nseg);
+getpar("inbin","d",&inbin);
+getpar("calc_xy","d",&calc_xy);
+getpar("xoff","f",&xoff);
+getpar("yoff","f",&yoff);
+getpar("tsstr","d",&tsstr);
+getpar("tsend","d",&tsend);
+getpar("tsinc","d",&tsinc);
+getpar("svmin","f",&svmin);
+getpar("slipmin","f",&slipmin);
+endpar();
+
+read_srf(&srf,infile,inbin);
+write_xyz(outfile,&srf,type,nseg,calc_xy,&xoff,&yoff,tsstr,tsend,tsinc,&svmin,&slipmin);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_const-rv.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_const-rv.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_const-rv.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,166 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+float xx, yy, vrup, inv_vrup, dstk, ddip, len2;
+int i, ip, j;
+char infile[256], outfile[256];
+
+struct standrupformat srf1;
+struct srf_prectsegments *prseg_ptr1;
+struct srf_apointvalues *apval_ptr1;
+
+int inbin = 0;
+int outbin = 0;
+
+int nstk = -1;
+int ndip = -1;
+float flen = -1.0;
+float fwid = -1.0;
+float shypo = -1.0e+15;
+float dhypo = -1.0e+15;
+
+float savg, smax, rt, sf, svec;
+struct velmodel rvmod;
+double rayp, rupt_rad;
+
+float dtop = -1.0;
+float dip = -1.0;
+struct velmodel vmod;
+char velfile[128];
+
+float rvfrac = DEFAULT_VR_TO_VS_FRAC;
+float shal_vrup = DEFAULT_SHAL_VRUP_FRAC;
+float tsfac = DEFAULT_TSFAC;
+float htol = 0.1;
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+
+velfile[0] = '\0';
+
+setpar(ac,av);
+getpar("infile","s",infile);
+getpar("inbin","d",&inbin);
+getpar("outfile","s",outfile);
+getpar("outbin","d",&outbin);
+getpar("nstk","d",&nstk);
+getpar("ndip","d",&ndip);
+getpar("flen","f",&flen);
+getpar("fwid","f",&fwid);
+getpar("dtop","f",&dtop);
+getpar("dip","f",&dip);
+getpar("shypo","f",&shypo);
+getpar("dhypo","f",&dhypo);
+
+mstpar("vrup","f",&vrup);
+if(vrup < 0.0)
+   {
+   getpar("rvfrac","f",&rvfrac);
+   getpar("shal_vrup","f",&shal_vrup);
+   getpar("tsfac","f",&tsfac);
+   getpar("velfile","s",velfile);
+   }
+endpar();
+
+read_srf(&srf1,infile,inbin);
+
+if(strncmp(srf1.type,"PLANE",5) == 0)
+   {
+   prseg_ptr1 = srf1.srf_prect.prectseg;
+
+   if(nstk < 0.0)
+      nstk = prseg_ptr1[0].nstk;
+   if(ndip < 0.0)
+      ndip = prseg_ptr1[0].ndip;
+   if(flen < 0.0)
+      flen = prseg_ptr1[0].flen;
+   if(fwid < 0.0)
+      fwid = prseg_ptr1[0].fwid;
+   if(dtop < 0.0)
+      dtop = prseg_ptr1[0].dtop;
+   if(dip < 0.0)
+      dip = prseg_ptr1[0].dip;
+   if(shypo < -1.0e+14)
+      shypo = prseg_ptr1[0].shyp;
+   if(dhypo < -1.0e+14)
+      dhypo = prseg_ptr1[0].dhyp;
+   }
+
+dstk = flen/nstk;
+ddip = fwid/ndip;
+len2 = 0.5*flen;
+inv_vrup = 1.0/vrup;
+
+if(nstk*ndip != srf1.srf_apnts.np)
+   {
+   fprintf(stderr,"problem with number of points, exiting...\n");
+   exit(-1);
+   }
+
+apval_ptr1 = srf1.srf_apnts.apntvals;
+
+if(vrup < 0.0)
+   {
+   if(velfile[0] != '\0')
+      read_velmodel(velfile,&vmod);
+   else
+      default_velmodel(&vmod);
+
+   conv2vrup(&vmod,&rvmod,&dip,&dtop,&fwid,&rvfrac,&shal_vrup);
+
+   savg = 0.0;
+   smax = -1.0;
+   for(j=0;j<ndip;j++)
+      {
+      for(i=0;i<nstk;i++)
+         {
+         ip = i + j*nstk;
+
+	 svec = sqrt(apval_ptr1[ip].slip1*apval_ptr1[ip].slip1 +
+	             apval_ptr1[ip].slip2*apval_ptr1[ip].slip2 +
+	             apval_ptr1[ip].slip3*apval_ptr1[ip].slip3);
+
+         savg = savg + svec;
+	 if(svec > smax)
+	    smax = svec;
+         }
+      }
+
+   savg = savg/(float)(nstk*ndip);
+   if((smax-savg) != (float)(0.0))
+      sf = 1.0/(smax-savg);
+   else
+      tsfac = sf = 0.0;
+   }
+
+for(j=0;j<ndip;j++)
+   {
+   yy = (j + 0.5)*ddip;
+   for(i=0;i<nstk;i++)
+      {
+      xx = (i + 0.5)*dstk - len2;
+      ip = i + j*nstk;
+
+      if(vrup < 0.0)
+         {
+         get_rupt(&rvmod,&htol,&dhypo,&yy,&shypo,&xx,&rayp,&rupt_rad,&rt);
+
+	 svec = sqrt(apval_ptr1[ip].slip1*apval_ptr1[ip].slip1 +
+	             apval_ptr1[ip].slip2*apval_ptr1[ip].slip2 +
+	             apval_ptr1[ip].slip3*apval_ptr1[ip].slip3);
+
+         rt = rt + sf*tsfac*(svec - savg);
+         }
+      else
+         rt = inv_vrup*sqrt((xx-shypo)*(xx-shypo) + (yy-dhypo)*(yy-dhypo));
+
+      apval_ptr1[ip].tinit = rt;
+      }
+   }
+
+write_srf(&srf1,outfile,outbin);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_resamp.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_resamp.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_resamp.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,206 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+float cosS, sinS, cosD, sinD, *stf1, *stf2;
+float bigdx, bigdy, bigdx2, bigdy2, dx, dy, clon, clat, cdep, ctinit;
+float *tlon0, *tlat0, *tlon1, *tlat1;
+float as, dd, dn, de, dz, rad, vr, tmin;
+int it, i, ip, j, k, ig, ik;
+int nfinestk, nfinedip;
+char infile[256], outfile[256];
+
+struct standrupformat srf1, srf2;
+struct srf_prectsegments *prseg_ptr1, *prseg_ptr2;
+struct srf_apointvalues *apval_ptr1, *apval_ptr2;
+
+int inbin = 0;
+int outbin = 0;
+
+float dlen = -1.0;
+float dwid = -1.0;
+
+float rperd = 0.017453293;
+
+float hlon = -1.0e+15;
+float hlat = -1.0e+15;
+float hdep = -1.0e+15;
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+
+setpar(ac,av);
+getpar("infile","s",infile);
+getpar("inbin","d",&inbin);
+getpar("outfile","s",outfile);
+getpar("outbin","d",&outbin);
+mstpar("nfinestk","d",&nfinestk);
+mstpar("nfinedip","d",&nfinedip);
+getpar("dlen","f",&dlen);
+getpar("dwid","f",&dwid);
+getpar("hlon","f",&hlon);
+getpar("hlat","f",&hlat);
+getpar("hdep","f",&hdep);
+endpar();
+
+read_srf(&srf1,infile,inbin);
+
+strcpy(srf2.version,srf1.version);
+
+if(strncmp(srf1.type,"PLANE",5) == 0)
+   {
+   strcpy(srf2.type,srf1.type);
+   srf2.srf_prect.nseg = srf1.srf_prect.nseg;
+
+   srf2.srf_prect.prectseg = (struct srf_prectsegments *)check_malloc(srf2.srf_prect.nseg*sizeof(struct srf_prectsegments));
+
+   prseg_ptr1 = srf1.srf_prect.prectseg;
+   prseg_ptr2 = srf2.srf_prect.prectseg;
+
+   for(ig=0;ig<srf2.srf_prect.nseg;ig++)
+      {
+      prseg_ptr2[ig].elon = prseg_ptr1[ig].elon;
+      prseg_ptr2[ig].elat = prseg_ptr1[ig].elat;
+      prseg_ptr2[ig].nstk = prseg_ptr1[ig].nstk*nfinestk;
+      prseg_ptr2[ig].ndip = prseg_ptr1[ig].ndip*nfinedip;
+      prseg_ptr2[ig].flen = prseg_ptr1[ig].flen;
+      prseg_ptr2[ig].fwid = prseg_ptr1[ig].fwid;
+      prseg_ptr2[ig].stk  = prseg_ptr1[ig].stk;
+      prseg_ptr2[ig].dip  = prseg_ptr1[ig].dip;
+      prseg_ptr2[ig].dtop = prseg_ptr1[ig].dtop;
+      prseg_ptr2[ig].shyp = prseg_ptr1[ig].shyp;
+      prseg_ptr2[ig].dhyp = prseg_ptr1[ig].dhyp;
+      }
+   }
+
+srf2.srf_apnts.np = srf1.srf_apnts.np*nfinestk*nfinedip;
+srf2.srf_apnts.apntvals = (struct srf_apointvalues *)check_malloc((srf2.srf_apnts.np)*sizeof(struct srf_apointvalues));
+
+apval_ptr1 = srf1.srf_apnts.apntvals;
+apval_ptr2 = srf2.srf_apnts.apntvals;
+
+tmin = 1.0e+15;
+for(i=0;i<srf1.srf_apnts.np;i++)
+   {
+   if(apval_ptr1[i].tinit < tmin)
+      {
+      ik = i;
+      tmin = apval_ptr1[i].tinit;
+      }
+   }
+
+if(hlon < -1.0e+14)
+   hlon = apval_ptr1[ik].lon;
+if(hlat < -1.0e+14)
+   hlat = apval_ptr1[ik].lat;
+if(hdep < -1.0e+14)
+   hdep = apval_ptr1[ik].dep;
+
+for(i=0;i<srf1.srf_apnts.np;i++)
+   {
+   clon = apval_ptr1[i].lon;
+   clat = apval_ptr1[i].lat;
+   cdep = apval_ptr1[i].dep;
+   ctinit = apval_ptr1[i].tinit;
+
+   cosS = cos(rperd*apval_ptr1[i].stk);
+   sinS = sin(rperd*apval_ptr1[i].stk);
+   cosD = cos(rperd*apval_ptr1[i].dip);
+   sinD = sin(rperd*apval_ptr1[i].dip);
+
+   bigdx = dlen;
+   if(bigdx < 0.0)
+      bigdx = 1.0e-05*sqrt(apval_ptr1[i].area);
+   
+   bigdx2 = 0.5*bigdx;
+   dx = bigdx/nfinestk;
+
+   bigdy = dwid;
+   if(bigdy < 0.0)
+      bigdy = 1.0e-05*sqrt(apval_ptr1[i].area);
+   
+   bigdy2 = 0.5*bigdy;
+   dy = bigdy/nfinedip;
+
+   tlon0 = &(apval_ptr1[i].lon);
+   tlat0 = &(apval_ptr1[i].lat);
+   set_ne(&hlon,&hlat,tlon0,tlat0,&dn,&de);
+
+   dz = apval_ptr1[i].dep - hdep;
+
+   rad = sqrt(dn*dn + de*de + dz*dz);
+
+   vr = 3.0;
+   if(rad > 0.0 && ctinit > 0.0)
+      vr = rad/ctinit;
+
+   for(j=0;j<nfinedip;j++)
+      {
+      for(k=0;k<nfinestk;k++)
+         {
+	 ip = k + j*nfinestk + i*nfinestk*nfinedip;
+
+	 as = (k+0.5)*dx - bigdx2;
+	 dd = (j+0.5)*dy - bigdy2;
+
+	 dn = as*cosS - dd*cosD*sinS;
+	 de = as*sinS + dd*cosD*cosS;
+	 dz = dd*sinD;
+
+	 tlon0 = &(apval_ptr1[i].lon);
+	 tlat0 = &(apval_ptr1[i].lat);
+	 tlon1 = &(apval_ptr2[ip].lon);
+	 tlat1 = &(apval_ptr2[ip].lat);
+         set_ll(tlon0,tlat0,tlon1,tlat1,&dn,&de);
+
+         apval_ptr2[ip].dep   = apval_ptr1[i].dep + dz;
+
+         apval_ptr2[ip].stk   = apval_ptr1[i].stk;
+         apval_ptr2[ip].dip   = apval_ptr1[i].dip;
+         apval_ptr2[ip].area  = apval_ptr1[i].area/(nfinestk*nfinedip);
+
+	 tlon0 = &(apval_ptr2[ip].lon);
+	 tlat0 = &(apval_ptr2[ip].lat);
+         set_ne(&hlon,&hlat,tlon0,tlat0,&dn,&de);
+
+	 dz = apval_ptr2[ip].dep - hdep;
+
+	 rad = sqrt(dn*dn + de*de + dz*dz);
+	 apval_ptr2[ip].tinit = rad/vr;
+
+         apval_ptr2[ip].dt    = apval_ptr1[i].dt;
+         apval_ptr2[ip].rake  = apval_ptr1[i].rake;
+         apval_ptr2[ip].slip1 = apval_ptr1[i].slip1;
+         apval_ptr2[ip].nt1   = apval_ptr1[i].nt1;
+         apval_ptr2[ip].slip2 = apval_ptr1[i].slip2;
+         apval_ptr2[ip].nt2   = apval_ptr1[i].nt2;
+         apval_ptr2[ip].slip3 = apval_ptr1[i].slip3;
+         apval_ptr2[ip].nt3   = apval_ptr1[i].nt3;
+
+         apval_ptr2[ip].stf1 = (float *)check_malloc((apval_ptr2[ip].nt1)*sizeof(float));
+         apval_ptr2[ip].stf2 = (float *)check_malloc((apval_ptr2[ip].nt2)*sizeof(float));
+         apval_ptr2[ip].stf3 = (float *)check_malloc((apval_ptr2[ip].nt3)*sizeof(float));
+
+	 stf1 = apval_ptr1[i].stf1;
+	 stf2 = apval_ptr2[ip].stf1;
+	 for(it=0;it<apval_ptr2[ip].nt1;it++)
+	    stf2[it] = stf1[it];
+
+	 stf1 = apval_ptr1[i].stf2;
+	 stf2 = apval_ptr2[ip].stf2;
+	 for(it=0;it<apval_ptr2[ip].nt2;it++)
+	    stf2[it] = stf1[it];
+
+	 stf1 = apval_ptr1[i].stf3;
+	 stf2 = apval_ptr2[ip].stf3;
+	 for(it=0;it<apval_ptr2[ip].nt3;it++)
+	    stf2[it] = stf1[it];
+         }
+      }
+   }
+
+write_srf(&srf2,outfile,outbin);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_rotate-rake.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_rotate-rake.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_rotate-rake.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,99 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+float arg, cosT, sinT, *xt, *yt, *ut, *vt, s1, s2;
+int it, nt, i;
+char infile[256], outfile[256];
+
+struct standrupformat srf;
+struct srf_apointvalues *apval_ptr;
+
+int inbin = 0;
+int outbin = 0;
+
+float rake;
+float rperd = 0.017453293;
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+
+setpar(ac,av);
+getpar("infile","s",infile);
+getpar("inbin","d",&inbin);
+getpar("outfile","s",outfile);
+getpar("outbin","d",&outbin);
+mstpar("rake","f",&rake);
+endpar();
+
+xt = NULL;
+yt = NULL;
+
+read_srf(&srf,infile,inbin);
+
+apval_ptr = srf.srf_apnts.apntvals;
+for(i=0;i<srf.srf_apnts.np;i++)
+   {
+   arg = (rake - apval_ptr[i].rake)*rperd;
+   cosT = cos(arg);
+   sinT = sin(arg);
+
+   if(apval_ptr[i].nt1 != 0 || apval_ptr[i].nt2 != 0)
+      {
+      if(apval_ptr[i].nt1 != 0)
+	 {
+         nt = apval_ptr[i].nt1;
+	 yt = (float *) check_realloc(yt,nt*sizeof(float));
+	 ut = apval_ptr[i].stf1;
+	 for(it=0;it<nt;it++)
+	    yt[it] = ut[it];
+	 }
+      else
+         {
+         nt = apval_ptr[i].nt2;
+	 yt = (float *) check_realloc(yt,nt*sizeof(float));
+	 for(it=0;it<nt;it++)
+	    yt[it] = 0.0;
+	 }
+
+      if(apval_ptr[i].nt2 != 0)
+	 {
+	 xt = (float *) check_realloc(xt,nt*sizeof(float));
+	 ut = apval_ptr[i].stf2;
+	 for(it=0;it<nt;it++)
+	    xt[it] = ut[it];
+	 }
+      else
+         {
+	 xt = (float *) check_realloc(xt,nt*sizeof(float));
+	 for(it=0;it<nt;it++)
+	    xt[it] = 0.0;
+	 }
+
+      apval_ptr[i].stf1 = (float *) check_realloc(apval_ptr[i].stf1,nt*sizeof(float));
+      apval_ptr[i].nt1 = nt;
+      apval_ptr[i].stf2 = (float *) check_realloc(apval_ptr[i].stf2,nt*sizeof(float));
+      apval_ptr[i].nt2 = nt;
+      ut = apval_ptr[i].stf1;
+      vt = apval_ptr[i].stf2;
+
+      for(it=0;it<nt;it++)
+         {
+	 ut[it] = xt[it]*sinT + yt[it]*cosT;
+	 vt[it] = xt[it]*cosT - yt[it]*sinT;
+	 }
+      }
+
+   apval_ptr[i].rake = rake;
+
+   s1 = apval_ptr[i].slip1;
+   s2 = apval_ptr[i].slip2;
+   apval_ptr[i].slip1 = s2*sinT + s1*cosT;
+   apval_ptr[i].slip2 = s2*cosT - s1*sinT;
+   }
+
+write_srf(&srf,outfile,outbin);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_subs.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_subs.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/srf_subs.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,755 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+void init_plane_srf(struct standrupformat *srf,float *elon,float *elat,int nx,int ny,float *fl,float *fw,float *dx,float *dy,float *stk,float *dip,float *dtop,float *sh,float *dh)
+{
+struct srf_prectsegments *prseg_ptr;
+int ig;
+
+sprintf(srf[0].type,"PLANE");
+
+srf[0].srf_prect.nseg = 1;
+srf[0].srf_prect.prectseg = (struct srf_prectsegments *)check_malloc(srf[0].srf_prect.nseg*sizeof(struct srf_prectsegments));
+prseg_ptr = srf[0].srf_prect.prectseg;
+
+prseg_ptr[0].elon = *elon;
+prseg_ptr[0].elat = *elat;
+prseg_ptr[0].nstk = nx;
+prseg_ptr[0].ndip = ny;
+prseg_ptr[0].flen = *fl;
+prseg_ptr[0].fwid = *fw;
+prseg_ptr[0].dlen = *dx;
+prseg_ptr[0].dwid = *dy;
+prseg_ptr[0].stk = *stk;
+prseg_ptr[0].dip = *dip;
+prseg_ptr[0].dtop = *dtop;
+prseg_ptr[0].shyp = *sh;
+prseg_ptr[0].dhyp = *dh;
+
+srf[0].srf_apnts.np = 0;
+for(ig=0;ig<srf[0].srf_prect.nseg;ig++)
+   srf[0].srf_apnts.np = srf[0].srf_apnts.np + (prseg_ptr[ig].nstk)*(prseg_ptr[ig].ndip);
+
+srf[0].srf_apnts.apntvals = (struct srf_apointvalues *)check_malloc((srf[0].srf_apnts.np)*sizeof(struct srf_apointvalues));
+}
+
+void load_slip_srf(struct standrupformat *srf,struct stfpar *spar,struct pointsource *ps)
+{
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+float area;
+float *stf;
+int i, j, ip, ig, ntot;
+
+float dmin = 4.0;
+float dmax = 6.0;
+float rtfac, tzero;
+float rtfac0 = 1.0;
+
+apnts_ptr = &(srf->srf_apnts);
+apval_ptr = apnts_ptr->apntvals;
+
+for(ip=0;ip<apnts_ptr->np;ip++)
+   {
+   apval_ptr[ip].stf1 = (float *)check_malloc(spar->nt*sizeof(float));
+   stf = apval_ptr[ip].stf1;
+
+   apval_ptr[ip].dt = spar->dt;
+   if(ps[ip].slip > MINSLIP)
+      {
+      if(ps[ip].dep >= dmax)
+         rtfac = 1.0;
+      else if(ps[ip].dep < dmax && ps[ip].dep > dmin)
+         rtfac = 1.0 + rtfac0*(dmax-(ps[ip].dep))/(dmax-dmin);
+      else
+         rtfac = 1.0 + rtfac0;
+
+      tzero = rtfac*spar->trise;
+      apval_ptr[ip].nt1 = gen_2tri_stf(&(ps[ip].slip),&spar->trise,stf,spar->nt,&spar->dt,&ps[ip].dep);
+      }
+   else
+      apval_ptr[ip].nt1 = 0;
+
+   if(apval_ptr[ip].nt1)
+      apval_ptr[ip].stf1 = (float *)check_realloc(apval_ptr[ip].stf1,(apval_ptr[ip].nt1)*sizeof(float));
+   else
+      {
+      free(apval_ptr[ip].stf1);
+      apval_ptr[ip].stf1 = NULL;
+      }
+
+   apval_ptr[ip].lon = ps[ip].lon;
+   apval_ptr[ip].lat = ps[ip].lat;
+   apval_ptr[ip].dep = ps[ip].dep;
+   apval_ptr[ip].stk = ps[ip].stk;
+   apval_ptr[ip].dip = ps[ip].dip;
+   apval_ptr[ip].area = ps[ip].area;
+   apval_ptr[ip].rake = ps[ip].rak;
+   apval_ptr[ip].slip1 = ps[ip].slip;
+
+   apval_ptr[ip].slip2 = 0.0;
+   apval_ptr[ip].nt2 = 0;
+   apval_ptr[ip].stf2 = NULL;
+   apval_ptr[ip].slip3 = 0.0;
+   apval_ptr[ip].nt3 = 0;
+   apval_ptr[ip].stf3 = NULL;
+   }
+}
+
+void load_rupt_srf(struct standrupformat *srf,struct pointsource *ps,float *sh,float *dh)
+{
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+int ip;
+
+(srf->srf_prect).prectseg[0].shyp = *sh;
+(srf->srf_prect).prectseg[0].dhyp = *dh;
+
+apnts_ptr = &(srf->srf_apnts);
+apval_ptr = apnts_ptr->apntvals;
+
+for(ip=0;ip<apnts_ptr->np;ip++)
+   apval_ptr[ip].tinit = ps[ip].rupt;
+}
+
+void write_srf(struct standrupformat *srf,char *file,int bflag)
+{
+FILE *fpw, *fopfile();
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+float area;
+float *stf;
+int i, j, k, nt6, it, ip, ig, ntot;
+
+char pword[32];
+int fdw;
+
+prect_ptr = &(srf->srf_prect);
+prseg_ptr = prect_ptr->prectseg;
+apnts_ptr = &(srf->srf_apnts);
+apval_ptr = apnts_ptr->apntvals;
+
+if(bflag)
+   {
+   if(strcmp(file,"stdout") == 0)
+      fdw = STDOUT_FILENO;
+   else
+      fdw = croptrfile(file);
+
+   rite(fdw,srf->version,sizeof(srf->version));
+
+   if(strcmp(srf->type,"PLANE") == 0)
+      {
+      rite(fdw,srf->type,sizeof(srf->type));
+      rite(fdw,&(prect_ptr->nseg),sizeof(prect_ptr->nseg));
+      rite(fdw,prseg_ptr,(prect_ptr->nseg)*sizeof(struct srf_prectsegments));
+      }
+
+   sprintf(pword,"POINTS");
+   rite(fdw,pword,sizeof(pword));
+   rite(fdw,&(apnts_ptr->np),sizeof(apnts_ptr->np));
+   for(i=0;i<apnts_ptr->np;i++)
+      {
+      rite(fdw,&(apval_ptr[i].lon),sizeof(float));
+      rite(fdw,&(apval_ptr[i].lat),sizeof(float));
+      rite(fdw,&(apval_ptr[i].dep),sizeof(float));
+      rite(fdw,&(apval_ptr[i].stk),sizeof(float));
+      rite(fdw,&(apval_ptr[i].dip),sizeof(float));
+      rite(fdw,&(apval_ptr[i].area),sizeof(float));
+      rite(fdw,&(apval_ptr[i].tinit),sizeof(float));
+      rite(fdw,&(apval_ptr[i].dt),sizeof(float));
+      rite(fdw,&(apval_ptr[i].rake),sizeof(float));
+      rite(fdw,&(apval_ptr[i].slip1),sizeof(float));
+      rite(fdw,&(apval_ptr[i].nt1),sizeof(int));
+      rite(fdw,&(apval_ptr[i].slip2),sizeof(float));
+      rite(fdw,&(apval_ptr[i].nt2),sizeof(int));
+      rite(fdw,&(apval_ptr[i].slip3),sizeof(float));
+      rite(fdw,&(apval_ptr[i].nt3),sizeof(int));
+
+      rite(fdw,apval_ptr[i].stf1,(apval_ptr[i].nt1)*sizeof(float));
+      rite(fdw,apval_ptr[i].stf2,(apval_ptr[i].nt2)*sizeof(float));
+      rite(fdw,apval_ptr[i].stf3,(apval_ptr[i].nt3)*sizeof(float));
+      }
+   close(fdw);
+   }
+else
+   {
+   if(strcmp(file,"stdout") == 0)
+      fpw = stdout;
+   else
+      fpw = fopfile(file,"w");
+
+   fprintf(fpw,"%s\n",srf->version);
+
+   if(strcmp(srf->type,"PLANE") == 0)
+      {
+      fprintf(fpw,"%s %d\n",srf->type,prect_ptr->nseg);
+      for(ig=0;ig<prect_ptr->nseg;ig++)
+         {
+         fprintf(fpw,"%10.4f %9.4f %5d %5d %8.2f %8.2f\n",prseg_ptr[ig].elon,
+                                                        prseg_ptr[ig].elat,
+                                                        prseg_ptr[ig].nstk,
+                                                        prseg_ptr[ig].ndip,
+                                                        prseg_ptr[ig].flen,
+                                                        prseg_ptr[ig].fwid);
+         fprintf(fpw,"%4.0f %4.0f %8.2f %8.2f %8.2f\n",prseg_ptr[ig].stk,
+                                                    prseg_ptr[ig].dip,
+                                                    prseg_ptr[ig].dtop,
+                                                    prseg_ptr[ig].shyp,
+                                                    prseg_ptr[ig].dhyp);
+         }
+      }
+
+   fprintf(fpw,"POINTS %d\n",apnts_ptr->np);
+   for(i=0;i<apnts_ptr->np;i++)
+      {
+      fprintf(fpw,"%10.4f %9.4f %9.4f %4.0f %4.0f %12.5e %10.4f %12.5e\n",
+                                              apval_ptr[i].lon,
+                                              apval_ptr[i].lat,
+                                              apval_ptr[i].dep,
+                                              apval_ptr[i].stk,
+                                              apval_ptr[i].dip,
+                                              apval_ptr[i].area,
+                                              apval_ptr[i].tinit,
+                                              apval_ptr[i].dt);
+      fprintf(fpw,"%4.0f %8.2f %6d %8.2f %6d %8.2f %6d\n",
+                                              apval_ptr[i].rake,
+                                              apval_ptr[i].slip1,
+                                              apval_ptr[i].nt1,
+                                              apval_ptr[i].slip2,
+                                              apval_ptr[i].nt2,
+                                              apval_ptr[i].slip3,
+                                              apval_ptr[i].nt3);
+
+      stf = apval_ptr[i].stf1;
+      nt6 = (apval_ptr[i].nt1)/6;
+      for(k=0;k<nt6;k++)
+         {
+         for(j=0;j<6;j++)
+            {
+            it = 6*k + j;
+            fprintf(fpw,"%13.5e",stf[it]);
+            }
+         fprintf(fpw,"\n");
+         }
+
+      if(6*nt6 != (apval_ptr[i].nt1))
+         {
+         for(j=6*nt6;j<(apval_ptr[i].nt1);j++)
+            fprintf(fpw,"%13.5e",stf[j]);
+
+         fprintf(fpw,"\n");
+         }
+
+      stf = apval_ptr[i].stf2;
+      nt6 = (apval_ptr[i].nt2)/6;
+      for(k=0;k<nt6;k++)
+         {
+         for(j=0;j<6;j++)
+            {
+            it = 6*k + j;
+            fprintf(fpw,"%13.5e",stf[it]);
+            }
+         fprintf(fpw,"\n");
+         }
+
+      if(6*nt6 != (apval_ptr[i].nt2))
+         {
+         for(j=6*nt6;j<(apval_ptr[i].nt2);j++)
+            fprintf(fpw,"%13.5e",stf[j]);
+
+         fprintf(fpw,"\n");
+         }
+
+      stf = apval_ptr[i].stf3;
+      nt6 = (apval_ptr[i].nt3)/6;
+      for(k=0;k<nt6;k++)
+         {
+         for(j=0;j<6;j++)
+            {
+            it = 6*k + j;
+            fprintf(fpw,"%13.5e",stf[it]);
+            }
+         fprintf(fpw,"\n");
+         }
+
+      if(6*nt6 != (apval_ptr[i].nt3))
+         {
+         for(j=6*nt6;j<(apval_ptr[i].nt3);j++)
+            fprintf(fpw,"%13.5e",stf[j]);
+
+         fprintf(fpw,"\n");
+         }
+      }
+   fclose(fpw);
+   }
+}
+
+void free_srf_stf(struct standrupformat *srf)
+{
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+int i;
+
+apnts_ptr = &(srf->srf_apnts);
+apval_ptr = apnts_ptr->apntvals;
+
+for(i=0;i<apnts_ptr->np;i++)
+   {
+   free(apval_ptr[i].stf1);
+   free(apval_ptr[i].stf2);
+   free(apval_ptr[i].stf3);
+   }
+}
+
+void read_srf(struct standrupformat *srf,char *file,int bflag)
+{
+FILE *fpr, *fopfile();
+struct srf_prectsegments *prseg_ptr;
+struct srf_apointvalues *apval_ptr;
+char str[1024];
+
+float *stf;
+int i, j, k, nt6, it, ip, ig, ntot;
+
+char pword[32];
+int fdr;
+
+if(bflag)
+   {
+   if(strcmp(file,"stdin") == 0)
+      fdr = STDIN_FILENO;
+   else
+      fdr = opfile_ro(file);
+
+   reed(fdr,srf->version,sizeof(srf->version));
+
+   reed(fdr,pword,sizeof(pword));
+   if(strcmp(pword,"PLANE") == 0)
+      {
+      sprintf(srf->type,"PLANE");
+
+      reed(fdr,&(srf[0].srf_prect.nseg),sizeof(int));
+      srf[0].srf_prect.prectseg = (struct srf_prectsegments *)check_malloc(srf[0].srf_prect.nseg*sizeof(struct srf_prectsegments));
+      prseg_ptr = srf[0].srf_prect.prectseg;
+
+      reed(fdr,prseg_ptr,(srf[0].srf_prect.nseg)*sizeof(struct srf_prectsegments));
+
+      while(strncmp(pword,"POINTS",6) != 0)
+         reed(fdr,pword,sizeof(pword));
+      }
+
+   if(strncmp(pword,"POINTS",6) == 0)
+      {
+      reed(fdr,&(srf[0].srf_apnts.np),sizeof(int));
+      srf[0].srf_apnts.apntvals = (struct srf_apointvalues *)check_malloc((srf[0].srf_apnts.np)*sizeof(struct srf_apointvalues));
+
+      apval_ptr = srf[0].srf_apnts.apntvals;
+
+      for(i=0;i<srf[0].srf_apnts.np;i++)
+         {
+         reed(fdr,&(apval_ptr[i].lon),sizeof(float));
+         reed(fdr,&(apval_ptr[i].lat),sizeof(float));
+         reed(fdr,&(apval_ptr[i].dep),sizeof(float));
+         reed(fdr,&(apval_ptr[i].stk),sizeof(float));
+         reed(fdr,&(apval_ptr[i].dip),sizeof(float));
+         reed(fdr,&(apval_ptr[i].area),sizeof(float));
+         reed(fdr,&(apval_ptr[i].tinit),sizeof(float));
+         reed(fdr,&(apval_ptr[i].dt),sizeof(float));
+         reed(fdr,&(apval_ptr[i].rake),sizeof(float));
+         reed(fdr,&(apval_ptr[i].slip1),sizeof(float));
+         reed(fdr,&(apval_ptr[i].nt1),sizeof(int));
+         reed(fdr,&(apval_ptr[i].slip2),sizeof(float));
+         reed(fdr,&(apval_ptr[i].nt2),sizeof(int));
+         reed(fdr,&(apval_ptr[i].slip3),sizeof(float));
+         reed(fdr,&(apval_ptr[i].nt3),sizeof(int));
+
+         apval_ptr[i].stf1 = (float *)check_malloc((apval_ptr[i].nt1)*sizeof(float));
+         apval_ptr[i].stf2 = (float *)check_malloc((apval_ptr[i].nt2)*sizeof(float));
+         apval_ptr[i].stf3 = (float *)check_malloc((apval_ptr[i].nt3)*sizeof(float));
+
+         reed(fdr,apval_ptr[i].stf1,(apval_ptr[i].nt1)*sizeof(float));
+         reed(fdr,apval_ptr[i].stf2,(apval_ptr[i].nt2)*sizeof(float));
+         reed(fdr,apval_ptr[i].stf3,(apval_ptr[i].nt3)*sizeof(float));
+         }
+      }
+   close(fdr);
+   }
+else
+   {
+   if(strcmp(file,"stdin") == 0)
+      fpr = stdin;
+   else
+      fpr = fopfile(file,"r");
+
+   fgets(str,1024,fpr);
+   sscanf(str,"%s",&(srf[0].version));
+
+   fgets(str,1024,fpr);
+   sscanf(str,"%s",pword);
+
+   if(strncmp(pword,"PLANE",5) == 0)
+      {
+      sscanf(str,"%s %d",srf[0].type,&(srf[0].srf_prect.nseg));
+
+      srf[0].srf_prect.prectseg = (struct srf_prectsegments *)check_malloc(srf[0].srf_prect.nseg*sizeof(struct srf_prectsegments));
+      prseg_ptr = srf[0].srf_prect.prectseg;
+
+      for(ig=0;ig<srf[0].srf_prect.nseg;ig++)
+         {
+         fgets(str,1024,fpr);
+         sscanf(str,"%f %f %d %d %f %f",&(prseg_ptr[ig].elon),
+                                     &(prseg_ptr[ig].elat),
+                                     &(prseg_ptr[ig].nstk),
+                                     &(prseg_ptr[ig].ndip),
+                                     &(prseg_ptr[ig].flen),
+                                     &(prseg_ptr[ig].fwid));
+         fgets(str,1024,fpr);
+         sscanf(str,"%f %f %f %f %f",&(prseg_ptr[ig].stk),
+                                  &(prseg_ptr[ig].dip),
+                                  &(prseg_ptr[ig].dtop),
+                                  &(prseg_ptr[ig].shyp),
+                                  &(prseg_ptr[ig].dhyp));
+         }
+
+      while(strncmp(pword,"POINTS",6) != 0)
+	 {
+         fgets(str,1024,fpr);
+         sscanf(str,"%s",pword);
+	 }
+      }
+
+   if(strncmp(pword,"POINTS",6) == 0)
+      {
+      sscanf(str,"%*s %d",&(srf[0].srf_apnts.np));
+      srf[0].srf_apnts.apntvals = (struct srf_apointvalues *)check_malloc((srf[0].srf_apnts.np)*sizeof(struct srf_apointvalues));
+
+      apval_ptr = srf[0].srf_apnts.apntvals;
+
+      for(i=0;i<srf[0].srf_apnts.np;i++)
+         {
+         fgets(str,1024,fpr);
+         sscanf(str,"%f %f %f %f %f %f %f %f",&(apval_ptr[i].lon),
+                                           &(apval_ptr[i].lat),
+                                           &(apval_ptr[i].dep),
+                                           &(apval_ptr[i].stk),
+                                           &(apval_ptr[i].dip),
+                                           &(apval_ptr[i].area),
+                                           &(apval_ptr[i].tinit),
+                                           &(apval_ptr[i].dt));
+         fgets(str,1024,fpr);
+         sscanf(str,"%f %f %d %f %d %f %d",&(apval_ptr[i].rake),
+                                        &(apval_ptr[i].slip1),
+                                        &(apval_ptr[i].nt1),
+                                        &(apval_ptr[i].slip2),
+                                        &(apval_ptr[i].nt2),
+                                        &(apval_ptr[i].slip3),
+                                        &(apval_ptr[i].nt3));
+
+         apval_ptr[i].stf1 = (float *)check_malloc((apval_ptr[i].nt1)*sizeof(float));
+         stf = apval_ptr[i].stf1;
+
+         for(it=0;it<(apval_ptr[i].nt1);it++)
+            fscanf(fpr,"%f",&stf[it]);
+
+         apval_ptr[i].stf2 = (float *)check_malloc((apval_ptr[i].nt2)*sizeof(float));
+         stf = apval_ptr[i].stf2;
+
+         for(it=0;it<(apval_ptr[i].nt2);it++)
+            fscanf(fpr,"%f",&stf[it]);
+
+         apval_ptr[i].stf3 = (float *)check_malloc((apval_ptr[i].nt3)*sizeof(float));
+         stf = apval_ptr[i].stf3;
+
+         for(it=0;it<(apval_ptr[i].nt3);it++)
+            fscanf(fpr,"%f",&stf[it]);
+
+         /* get rouge newline character */
+         if((apval_ptr[i].nt1) || (apval_ptr[i].nt2) || (apval_ptr[i].nt3))
+            fgets(str,1024,fpr);
+         }
+      }
+   fclose(fpr);
+   }
+}
+
+int gen_2tri_stfOLD(float *slip,float *trise,float *stf,int nt,float *dt,float *z0)
+{
+int it, nstf;
+int ip, it0, it1, it2;
+float tr, amp, a0;
+float sum;
+
+float alpha = 0.1;      /* 1st triangle has pulse width = 2*alpha*trise */
+float betadeep = 0.2;       /* 2nd triangle has amplitude = beta*A (z0>dmax)*/
+float betashal = 0.5;       /* 2nd triangle has amplitude = beta*A (z0<dmin)*/
+float beta, dbdd;
+
+float dmin = 4.0;
+float dmax = 8.0;
+float rtfac;
+float rtfac0 = 1.0;
+
+dbdd = (betadeep - betashal)/(dmax-dmin);
+
+if((*z0) >= dmax)
+   beta = betadeep;
+else if((*z0) < dmax && (*z0) > dmin)
+   beta = betadeep - (dmax-(*z0))*dbdd;
+else
+   beta = betashal;
+
+zapit(stf,nt);
+
+if((*z0) >= dmax)
+   rtfac = 1.0;
+else if((*z0) < dmax && (*z0) > dmin)
+   rtfac = 1.0 + rtfac0*(dmax-(*z0))/(dmax-dmin);
+else
+   rtfac = 1.0 + rtfac0;
+
+tr = (*trise)*rtfac;
+
+alpha = alpha*tr;
+
+it0 = (int)((alpha)/(*dt) + 0.5);
+if(it0 < 2)
+   it0 = 2;
+it1 = (int)((tr)/(*dt) + 0.5);
+if(it1 < 4)
+   it1 = 4;
+
+it2 = (2 - beta)*it0;
+
+a0 = 1.0;
+amp = a0/(float)(it0);
+
+for(it=0;it<it0;it++)
+   stf[it] = it*amp;
+
+for(it=it0;it<it2;it++)
+   stf[it] = (2*it0-it)*amp;
+
+amp = beta*a0/(float)(it1-it2);
+
+for(it=it2;it<it1;it++)
+   stf[it] = beta*a0 + (it2-it)*amp;
+
+nstf = nt-1;
+while(stf[nstf] == (float)(0.0) && nstf)
+   nstf--;
+
+if(nstf == 0)
+   return(0);
+
+if(nstf < nt-1)
+   nstf = nstf + 2;;
+
+sum = 0.0;
+for(it=0;it<nstf;it++)
+   sum = sum + (*dt)*stf[it];
+
+if(sum <= 0.0)
+   return(0);
+
+/* scale STF by slip */
+sum = (*slip)/sum;
+for(it=0;it<nstf;it++)
+   stf[it] = stf[it]*sum;
+
+return(nstf);
+}
+
+int gen_brune_stf(float *slip,float *t0,float *stf,int nt,float *dt,float *z0)
+{
+int it, nstf;
+float t95, tend, sfac, tfac;
+float sum;
+
+zapit(stf,nt);
+
+t95 = 1.745*exp(1.0)*(*t0);
+tend = 3.0*t95;
+
+nstf = (int)((tend)/(*dt) + 0.5);
+if(nstf > nt)
+   nstf = nt;
+
+if(nstf == 0)
+   return(0);
+
+sfac = (*slip)/(*t0);
+tfac = (*dt)/(*t0);
+for(it=0;it<nstf;it++)
+   stf[it] = sfac*(it*tfac)*exp(-it*tfac);
+
+sum = 0.0;
+for(it=0;it<nstf;it++)
+   sum = sum + (*dt)*stf[it];
+
+if(sum <= 0.0)
+   return(0);
+
+return(nstf);
+}
+
+int gen_2tri_stf(float *slip,float *trise,float *stf,int nt,float *dt,float *z0)
+{
+int it, nstf;
+int ip, it0, it1, it2;
+float tr, amp, a0;
+float sum;
+float alpha = 0.1;      /* 1st triangle has pulse width = 2*alpha*trise */
+float betadeep = 0.2;       /* 2nd triangle has amplitude = beta*A (z0>dmax)*/
+float betashal = 0.5;       /* 2nd triangle has amplitude = beta*A (z0<dmin)*/
+float beta, dbdd;
+
+float dmin = 4.0;
+float dmax = 6.0;
+
+dbdd = (betadeep - betashal)/(dmax-dmin);
+
+if((*z0) >= dmax)
+   beta = betadeep;
+else if((*z0) < dmax && (*z0) > dmin)
+   beta = betadeep - (dmax-(*z0))*dbdd;
+else
+   beta = betashal;
+
+zapit(stf,nt);
+
+tr = (*trise);
+alpha = alpha*tr;
+
+it0 = (int)((alpha)/(*dt) + 0.5);
+if(it0 < 2)
+   it0 = 2;
+it1 = (int)((tr)/(*dt) + 0.5);
+if(it1 < 4)
+   it1 = 4;
+
+it2 = (2 - beta)*it0;
+
+a0 = 1.0;
+amp = a0/(float)(it0);
+
+for(it=0;it<it0;it++)
+   stf[it] = it*amp;
+
+for(it=it0;it<it2;it++)
+   stf[it] = (2*it0-it)*amp;
+
+amp = beta*a0/(float)(it1-it2);
+
+for(it=it2;it<it1;it++)
+   stf[it] = beta*a0 + (it2-it)*amp;
+
+nstf = nt-1;
+while(stf[nstf] == (float)(0.0) && nstf)
+   nstf--;
+
+if(nstf == 0)
+   return(0);
+
+if(nstf < nt-1)
+   nstf = nstf + 2;;
+
+sum = 0.0;
+for(it=0;it<nstf;it++)
+   sum = sum + (*dt)*stf[it];
+
+if(sum <= 0.0)
+   return(0);
+
+/* scale STF by slip */
+sum = (*slip)/sum;
+for(it=0;it<nstf;it++)
+   stf[it] = stf[it]*sum;
+
+return(nstf);
+}
+
+int gen_esg2006_stf(float *slip,float *trise,float *stf,int nt,float *dt,float *z0)
+{
+int it, nstf;
+int ip, it0, it1, it2;
+float tr, amp, a0, tt;
+float sum, arg1;
+float alpha, beta, gamma;
+float pi = 3.14159265;
+
+zapit(stf,nt);
+
+tr = (*trise);
+alpha = 4.0/tr;
+beta= 2.0*tr;
+gamma = alpha/sqrt(pi);
+
+nstf = (int)((2.0*beta)/(*dt) + 0.5);
+if(nstf > nt)
+   nstf = nt;
+
+if(nstf == 0)
+   return(0);
+
+for(it=0;it<nstf;it++)
+   {
+   tt = it*(*dt);
+
+   arg1 = alpha*(tt - beta);
+   stf[it] = exp(-arg1*arg1);
+   }
+
+for(it=0;it<nstf;it++)
+   sum = sum + (*dt)*stf[it];
+
+if(sum <= 0.0)
+   return(0);
+
+/* scale STF by slip */
+sum = (*slip)/sum;
+for(it=0;it<nstf;it++)
+   stf[it] = stf[it]*sum;
+
+return(nstf);
+}
+
+int gen_cos_stf(float *slip,float *t0,float *stf,int nt,float *dt,float *z0)
+{
+int it, nstf;
+float tfac, sum;
+float pi = 3.14159265;
+float one = 1.0;
+
+zapit(stf,nt);
+
+nstf = (int)((*t0)/(*dt));
+if(nstf > nt)
+   nstf = nt;
+
+if(nstf == 0)
+   return(0);
+
+tfac = 2.0*pi*(*dt)/(*t0);
+for(it=0;it<nstf;it++)
+   stf[it] = (one - cos(it*tfac));
+
+sum = 0.0;
+for(it=0;it<nstf;it++)
+   sum = sum + (*dt)*stf[it];
+
+if(sum <= 0.0)
+   return(0);
+
+/* scale STF by slip */
+sum = (*slip)/sum;
+for(it=0;it<nstf;it++)
+   stf[it] = stf[it]*sum;
+
+return(nstf);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/stoch2xyz.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/stoch2xyz.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/stoch2xyz.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,85 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+#include "defs.h"
+
+main(int ac,char **av)
+{
+FILE *fopfile(), *fpr, *fpw;
+int nseg;
+float xp, yp, dx, dy, val;
+int nx, ny, ix, iy, i, nb, ne;
+char infile[256], type[64], str[512], outfile[256];
+
+float xoff = 0.0;
+float yoff = 0.0;
+
+sprintf(infile,"stdin");
+sprintf(outfile,"stdout");
+sprintf(type,"slip");
+nseg = 0;
+
+setpar(ac,av);
+getpar("infile","s",infile);
+getpar("outfile","s",outfile);
+getpar("type","s",type);
+getpar("nseg","d",&nseg);
+getpar("xoff","f",&xoff);
+getpar("yoff","f",&yoff);
+endpar();
+
+if(strcmp(infile,"stdin") == 0)
+   fpr = stdin;
+else
+   fpr = fopfile(infile,"r");
+
+if(strcmp(outfile,"stdout") == 0)
+   fpw = stdout;
+else
+   fpw = fopfile(outfile,"w");
+
+fgets(str,512,fpr);
+sscanf(str,"%d",&nseg);
+
+for(i=0;i<nseg;i++)
+   {
+   fgets(str,512,fpr);
+   sscanf(str,"%*f %*f %d %d %f %f",&nx,&ny,&dx,&dy);
+   fgets(str,512,fpr);
+
+   if(strcmp(type,"slip") == 0)
+      {
+      nb = 0;
+      ne = 2*ny;
+      }
+   if(strcmp(type,"tinit") == 0)
+      {
+      nb = 2*ny;
+      ne = 0;
+      }
+
+   for(iy=0;iy<nb;iy++)
+      fgets(str,512,fpr);
+
+   for(iy=0;iy<ny;iy++)
+      {
+      yp = (iy + 0.5)*dy;
+      for(ix=0;ix<nx;ix++)
+         {
+         xp = (ix + 0.5)*dx + xoff;
+         fscanf(fpr,"%f",&val);
+
+	 fprintf(fpw,"%13.5e %13.5e %13.5e\n",xp,yp,val);
+	 }
+      }
+
+   xoff = xoff + nx*dx;
+   fgets(str,512,fpr); /* get rouge newline character */
+
+   for(iy=0;iy<ne;iy++)
+      fgets(str,512,fpr);
+   }
+
+fclose(fpr);
+fclose(fpw);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/structure.h
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/structure.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/structure.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,116 @@
+struct stfpar
+   {
+   int nt;
+   float dt;
+   float trise;
+   };
+
+struct pointsource
+   {
+   float lon;
+   float lat;
+   float dep;
+   float stk;
+   float dip;
+   float rak;
+   float area;
+   float slip;
+   float rupt;
+   };
+
+struct srf_apointvalues
+   {
+   float lon;
+   float lat;
+   float dep;
+   float stk;
+   float dip;
+   float area;
+   float tinit;
+   float dt;
+   float rake;
+   float slip1;
+   int nt1;
+   float slip2;
+   int nt2;
+   float slip3;
+   int nt3;
+   float *stf1;
+   float *stf2;
+   float *stf3;
+   };
+
+struct srf_allpoints
+   {
+   int np;
+   struct srf_apointvalues *apntvals;
+   };
+
+struct srf_prectsegments
+   {
+   float elon;
+   float elat;
+   int nstk;
+   int ndip;
+   float flen;
+   float fwid;
+   float dlen;
+   float dwid;
+   float stk;
+   float dip;
+   float dtop;
+   float shyp;
+   float dhyp;
+   };
+
+struct srf_planerectangle
+   {
+   int nseg;
+   struct srf_prectsegments *prectseg;
+   };
+
+struct standrupformat
+   {
+   char version[32];
+   char type[32];
+   struct srf_planerectangle srf_prect;
+   struct srf_allpoints srf_apnts;
+   };
+
+struct slippars
+   {
+   float lon;
+   float lat;
+   float dep;
+   float ds;
+   float dw;
+   float stk;
+   float dip;
+   float rake;
+   float slip;
+   float tinit;
+   int segno;
+   };
+
+struct generic_slip
+   {
+   int np;
+   struct slippars *spar;
+   };
+
+#ifndef STRUCT_VELMODEL
+#define STRUCT_VELMODEL
+
+struct velmodel
+   {
+   int nlay;
+   float *vp;
+   double *vs;    /* need double for ray tracing to get ruptime */
+   float *den;
+   float *th;
+   float *dep;
+   float *mu;     /* in CMS units */
+   double *invb2; /* need double for ray tracing to get ruptime */
+   };
+
+#endif

Added: SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/testget.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/testget.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/SlipModel/StandRupFormat/testget.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,49 @@
+#include <errno.h>
+#include <fcntl.h>
+#include <math.h>
+#include <stdio.h>
+#include <stdarg.h>
+#include <unistd.h>
+#include <stdlib.h>
+
+#include <sys/file.h>
+#include <sys/resource.h>
+#include <sys/signal.h>
+#include <sys/stat.h>
+#include <sys/syscall.h>
+#include <sys/time.h>
+#include <sys/types.h>
+
+void subr(float *);
+
+main(int ac,char **av)
+{
+float xlon, lon;
+int ffault = 0;
+
+setpar(ac,av);
+
+getpar("ffault","d",&ffault);
+
+if(ffault == 2)
+   subr(&xlon);
+
+fprintf(stderr,"xlon= %13.5f lon= %13.5f\n",xlon,lon);
+
+getpar("lon","f",&lon);
+
+endpar();
+
+fprintf(stderr,"xlon= %13.5f lon= %13.5f\n",xlon,lon);
+}
+
+void subr(float *x)
+{
+float lon;
+
+mstpar("lon","f",&lon);
+
+fprintf(stderr,"*x= %13.5f\n",lon);
+
+*x = lon;
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/Vel0.5/usc.000
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/Vel0.5/usc.000	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/Vel0.5/usc.000	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,685 @@
+usc       000 TITLE
+4096  1.00000e-01 0 0  0.00000e+00 0.0 0.0 0.0
+  4.84674e-23  2.01238e-22  4.71633e-22  8.15854e-22  1.17269e-21  1.53317e-21
+  1.88367e-21  2.21684e-21  2.52142e-21  2.71756e-21  2.93551e-21  3.18350e-21
+  3.37053e-21  3.54793e-21  3.76973e-21  4.01645e-21  4.22907e-21  4.46273e-21
+  4.77734e-21  5.08882e-21  5.36847e-21  5.72663e-21  6.25306e-21  6.98597e-21
+  7.78373e-21  8.69311e-21  9.82976e-21  1.11060e-20  1.24228e-20  1.36660e-20
+  1.49202e-20  1.61846e-20  1.73180e-20  1.82803e-20  1.90896e-20  2.13481e-20
+  1.67011e-19  5.03967e-18 -1.92189e-16 -2.19402e-14 -7.12183e-13 -9.32372e-12
+  5.13348e-12  1.67599e-09  2.21523e-08  1.37941e-07  3.62623e-07 -9.05174e-07
+ -1.27755e-05 -6.35108e-05 -2.11592e-04 -5.42773e-04 -1.14396e-03 -2.06013e-03
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+ -1.12489e+00 -6.16806e-01 -9.54026e-02  4.19903e-01  9.08735e-01  1.35050e+00
+  1.72618e+00  2.01998e+00  2.22036e+00  2.32179e+00  2.32623e+00  2.24382e+00
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Added: SwiftApps/Cybershake/app/post/JBSim3d/Vel0.5/usc.090
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/Vel0.5/usc.090	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/Vel0.5/usc.090	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,685 @@
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Added: SwiftApps/Cybershake/app/post/JBSim3d/Vel0.5/usc.ver
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/Vel0.5/usc.ver	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/Vel0.5/usc.ver	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,685 @@
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+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
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+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
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+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
+  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00

Added: SwiftApps/Cybershake/app/post/JBSim3d/bin/jbsim3d
===================================================================
(Binary files differ)


Property changes on: SwiftApps/Cybershake/app/post/JBSim3d/bin/jbsim3d
___________________________________________________________________
Added: svn:executable
   + *
Added: svn:mime-type
   + application/octet-stream

Added: SwiftApps/Cybershake/app/post/JBSim3d/jbrun.csh
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/jbrun.csh	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/jbrun.csh	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,48 @@
+#! /bin/csh
+
+set BINDIR = bin
+
+set STATS = ( USC )
+set STATFILE = ../StatInfo/cybersites.ll
+
+set OUTDIR = Vel0.5
+
+set RUPDIR = ../../ruptures/Srf
+set RUPMODFILE = hart_sgm-2m.10x10_rvf0.8.srf
+
+set SGT_MAIN_GFDIR = ../../data/SgtFiles
+set SGT_LOCAL_GFDIR = ../../data/ExtractSgtFiles
+
+set SEIS_FILE = USC_hart_2.grm
+
+\mkdir -p $SGT_LOCAL_GFDIR $OUTDIR
+
+set s = 0
+foreach stat ( $STATS )
+@ s ++
+
+#set slon = `gawk -v s=$stat 'BEGIN{x=-999.;}{if($3==s)x=$1;}END{print x;}' $STATFILE `
+#set slat = `gawk -v s=$stat 'BEGIN{x=-999.;}{if($3==s)x=$2;}END{print x;}' $STATFILE `
+set slon = -118.286 
+set slat =  34.0192
+
+$BINDIR/jbsim3d stat=$stat slon=$slon slat=$slat \
+                   rupmodfile=$RUPDIR/$RUPMODFILE \
+                   sgt_xfile=${SGT_MAIN_GFDIR}/${stat}_fx.sgt \
+                   sgt_yfile=${SGT_MAIN_GFDIR}/${stat}_fy.sgt \
+                   #sgt_zfile=${SGT_MAIN_GFDIR}/${stat}_fz.sgt \
+                   extract_sgt=1 \
+                   sgtdir=$SGT_LOCAL_GFDIR \
+                   extract_sgt_xfile=${stat}_fx-sub001.sgt \
+                   extract_sgt_yfile=${stat}_fy-sub001.sgt \
+                   #extract_sgt_zfile=${stat}_fz-sub001.sgt
+
+$BINDIR/jbsim3d stat=$stat slon=$slon slat=$slat \
+                outdir=$OUTDIR \
+                   rupmodfile=$RUPDIR/$RUPMODFILE \
+                   sgt_xfile=${SGT_LOCAL_GFDIR}/${stat}_fx-sub001.sgt \
+                   sgt_yfile=${SGT_LOCAL_GFDIR}/${stat}_fy-sub001.sgt \
+                   #sgt_zfile=${SGT_LOCAL_GFDIR}/${stat}_fz-sub001.sgt \
+				   seis_file=${SEIS_FILE}
+
+end

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/bailey2srfOLD.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/bailey2srfOLD.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/bailey2srfOLD.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,250 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+#define NTMAX 10000
+
+main(int ac,char **av)
+{
+FILE *fopfile(), *fpr, *fpw;
+float *stf;
+float x0, y0, z0, dd, vslip, rake;
+float len2, ds0, dd0, dsf, ddf;
+float area, sn, se, cosA, sinA, slon, slat;
+int ig, i, j, k, l, ip, kp, ntot, ntall;
+char filelist[256], *infile[20], outfile[256];
+char string[1024], filebuf[20*256];
+
+struct rob rrm;
+struct standrupformat srf;
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+float rupvel = -1.0;
+float shal_vrup = 1.0;
+float xtsfac;
+float tsfac = 0.0;
+float rvfrac, dt, rt;
+float htol = 0.1;
+double rayp, rupt_rad;
+int it, nt;
+struct velmodel vmod;
+char modfile[128];
+
+float cosD, sinD, arg;
+double rperd = 0.017453293;
+
+int nfinestk = 1;
+int nfinedip = 1;
+
+sprintf(srf.version,"1.0-alpha");
+
+nt = NTMAX;
+
+setpar(ac,av);
+
+getpar("version","s",srf.version);
+
+mstpar("filelist","s",filelist);
+mstpar("outfile","s",outfile);
+
+mstpar("dt","f",&dt);
+getpar("nt","d",&nt);
+
+getpar("nfinestk","d",&nfinestk);
+getpar("nfinedip","d",&nfinedip);
+
+getpar("tsfac","f",&tsfac);
+getpar("rupvel","f",&rupvel);
+if(rupvel < 0.0)
+   {
+   mstpar("modfile","s",modfile);
+   mstpar("rvfrac","f",&rvfrac);
+   getpar("shal_vrup","f",&shal_vrup);
+   }
+
+endpar();
+
+fpr = fopfile(filelist,"r");
+
+i = 0;
+infile[0] = filebuf;
+while(fscanf(fpr,"%s",infile[i]) != EOF)
+   {
+   i++;
+   infile[i] = filebuf + i*256;
+   }
+
+fclose(fpr);
+
+sprintf(srf.type,"PLANE");
+
+prect_ptr = &srf.srf_prect;
+prect_ptr->nseg = i;
+prseg_ptr = prect_ptr->prectseg;
+prseg_ptr = (struct srf_prectsegments *)check_malloc(prect_ptr->nseg*sizeof(struct srf_prectsegments));
+
+apnts_ptr = &srf.srf_apnts;
+apnts_ptr->np = 0;
+apval_ptr = apnts_ptr->apntvals;
+apval_ptr = (struct srf_apointvalues *)check_malloc(sizeof(struct srf_apointvalues));
+
+for(ig=0;ig<prect_ptr->nseg;ig++)
+   {
+   fprintf(stderr,"Reading file: %s\n",infile[ig]);
+   read_rob(&rrm,infile[ig],&tsfac);
+
+   prseg_ptr[ig].elon = rrm.elon;
+   prseg_ptr[ig].elat = rrm.elat;
+   prseg_ptr[ig].nstk = rrm.nstk*nfinestk;
+   prseg_ptr[ig].ndip = rrm.ndip*nfinedip;
+   prseg_ptr[ig].flen = rrm.flen;
+   prseg_ptr[ig].fwid = rrm.fwid;
+   prseg_ptr[ig].dlen = rrm.flen/prseg_ptr[ig].nstk;
+   prseg_ptr[ig].dwid = rrm.fwid/prseg_ptr[ig].ndip;
+   prseg_ptr[ig].stk = rrm.stk;
+   prseg_ptr[ig].dip = rrm.dip;
+   prseg_ptr[ig].dtop = rrm.dtop;
+   prseg_ptr[ig].shyp = rrm.shyp;
+   prseg_ptr[ig].dhyp = rrm.dhyp;
+
+   ntot = (prseg_ptr[ig].nstk)*(prseg_ptr[ig].ndip);
+   area = prseg_ptr[ig].dlen*prseg_ptr[ig].dwid*1.0e+10;
+
+   apval_ptr = (struct srf_apointvalues *)check_realloc(apval_ptr,(apnts_ptr->np+ntot)*sizeof(struct srf_apointvalues));
+
+   if(rupvel < 0.0)
+      conv2vrup(modfile,&vmod,&rrm.dip,&rrm.dtop,&rrm.fwid,&rvfrac,&shal_vrup);
+
+   ds0 = rrm.flen/rrm.nstk;
+   dd0 = rrm.fwid/rrm.ndip;
+
+   dsf = ds0/nfinestk;
+   ddf = dd0/nfinedip;
+
+   len2 = 0.5*rrm.flen;
+
+   arg = rrm.dip*rperd;
+   cosD = cos(arg);
+   sinD = sin(arg);
+
+   arg = rrm.stk*rperd;
+   cosA = cos(arg);
+   sinA = sin(arg);
+
+   for(j=0;j<rrm.ndip;j++)
+      {
+      for(i=0;i<rrm.nstk;i++)
+         {
+	 kp = i + j*rrm.nstk;
+
+         for(l=0;l<nfinedip;l++)
+            {
+            for(k=0;k<nfinestk;k++)
+               {
+	       ip = k + i*nfinestk + l*prseg_ptr[ig].nstk + j*prseg_ptr[ig].nstk*nfinedip + apnts_ptr->np;
+
+               dd = j*dd0 + (l+0.5)*ddf;
+
+               x0 = i*ds0 + (k+0.5)*dsf - len2;
+               y0 = dd*cosD;
+               z0 = rrm.dtop + dd*sinD;
+
+	       apval_ptr[ip].stf = (float *)check_malloc(nt*sizeof(float));
+	       stf = apval_ptr[ip].stf;
+
+	       apval_ptr[ip].dt = dt;
+               apval_ptr[ip].nt = gen_rob_stf(&rrm,i,j,stf,nt,&dt,&z0);
+
+	       if(apval_ptr[ip].nt)
+	          apval_ptr[ip].stf = (float *)check_realloc(apval_ptr[ip].stf,(apval_ptr[ip].nt)*sizeof(float));
+	       else
+	          free(apval_ptr[ip].stf);
+
+               get_rrmpars(&rrm,i,j,&x0,&dd,&rt,&vslip,&rake,&xtsfac);
+
+               if(rt < 0.0)
+                  {
+                  if(rupvel < 0.0)
+                     get_rupt(&vmod,&htol,&rrm.dhyp,&dd,&rrm.shyp,&x0,&rayp,&rupt_rad,&rt);
+                  else
+                     rt = sqrt((rrm.shyp-x0)*(rrm.shyp-x0)+(rrm.dhyp-dd)*(rrm.dhyp-dd))/rupvel;
+                  rt = rt + xtsfac;
+                  }
+
+               if(rt < 0.0)
+                  rt = 0.0;
+
+               se = x0*sinA + y0*cosA;
+               sn = x0*cosA - y0*sinA;
+	       set_ll(&rrm.elon,&rrm.elat,&slon,&slat,&sn,&se);
+
+	       apval_ptr[ip].as = x0;
+	       apval_ptr[ip].dd = dd;
+	       apval_ptr[ip].lon = slon;
+	       apval_ptr[ip].lat = slat;
+	       apval_ptr[ip].dep = z0;
+	       apval_ptr[ip].mu = -99;
+	       apval_ptr[ip].stk = prseg_ptr[ig].stk;
+	       apval_ptr[ip].dip = prseg_ptr[ig].dip;
+	       apval_ptr[ip].rake = rrm.rake[kp];
+	       apval_ptr[ip].area = area;
+	       apval_ptr[ip].slip = rrm.slip[kp];
+	       apval_ptr[ip].tinit = rt;
+               }
+            }
+         }
+      }
+
+   apnts_ptr->np = apnts_ptr->np + ntot;
+   }
+
+fpw = fopfile(outfile,"w");
+
+fprintf(fpw,"%s\n",srf.version);
+
+fprintf(fpw,"%s %d\n",srf.type,prect_ptr->nseg);
+for(ig=0;ig<prect_ptr->nseg;ig++)
+   {
+   fprintf(fpw,"%10.4f %10.4f %5d %5d %8.2f %8.2f\n",prseg_ptr[ig].elon,
+                                                     prseg_ptr[ig].elat,
+						     prseg_ptr[ig].nstk,
+						     prseg_ptr[ig].ndip,
+						     prseg_ptr[ig].flen,
+						     prseg_ptr[ig].fwid);
+   fprintf(fpw,"%4.0f %4.0f %8.2f %8.2f %8.2f\n",prseg_ptr[ig].stk,
+                                                 prseg_ptr[ig].dip,
+						 prseg_ptr[ig].dtop,
+						 prseg_ptr[ig].shyp,
+						 prseg_ptr[ig].dhyp);
+   }
+
+fprintf(fpw,"POINTS %d\n",apnts_ptr->np);
+for(i=0;i<apnts_ptr->np;i++)
+   {
+   fprintf(fpw,"%10.4f %10.4f %10.4f %10.4f %10.4f %13.5e\n",
+					      apval_ptr[i].as,
+					      apval_ptr[i].dd,
+					      apval_ptr[i].lon,
+					      apval_ptr[i].lat,
+					      apval_ptr[i].dep,
+					      apval_ptr[i].mu);
+   fprintf(fpw,"%4.0f %4.0f %4.0f %13.5e %8.2f %10.4f %6d %13.5e\n",
+					      apval_ptr[i].stk,
+					      apval_ptr[i].dip,
+					      apval_ptr[i].rake,
+					      apval_ptr[i].area,
+					      apval_ptr[i].slip,
+					      apval_ptr[i].tinit,
+					      apval_ptr[i].nt,
+					      apval_ptr[i].dt);
+	       
+   stf = apval_ptr[i].stf;
+   for(it=0;it<apval_ptr[i].nt;it++)
+      fprintf(fpw,"%13.5e\n",stf[it]);
+   }
+
+fclose(fpw);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/beroza_rupm.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/beroza_rupm.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/beroza_rupm.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,224 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+void get_brmpars(struct beroza *brm,int i,int j,float *xp,float *zp,float *rt,float *vs)
+{
+float dx, dz, dxdz;
+float w0, w1, w2, w3;
+int ip0, ip1, ip2, ip3;
+float one = 1.0;
+
+ip0 = i + j*(brm->npstk);
+ip1 = ip0 + 1;
+ip2 = ip0 + (brm->npstk);
+ip3 = ip2 + 1;;
+
+dx = (*xp - brm->as[ip0])/(brm->as[ip1] - brm->as[ip0]);
+dz = (*zp - brm->dd[ip0])/(brm->dd[ip2] - brm->dd[ip0]);
+dxdz = dx*dz;
+
+w0 = one - dx - dz + dxdz;
+w1 = dx - dxdz;
+w2 = dz - dxdz;
+w3 = dxdz;
+
+*rt = w0*brm->rupt[ip0] + w1*brm->rupt[ip1] + w2*brm->rupt[ip2] + w3*brm->rupt[ip3];
+*vs = w0*brm->slip[ip0] + w1*brm->slip[ip1] + w2*brm->slip[ip2] + w3*brm->slip[ip3];
+}
+
+void beroza_stf(struct beroza *brm,int i,int j,float *s,float *u,float *stf,int nt,float *dt,float *z0)
+{
+FILE *fpw;
+int it, k, kend, nstf;
+int ip0, ip1, ip2, ip3;
+float tp, tr, t2, invtp, tp2, tt;
+float sum, *sv, *sn, *se, c0, c1;
+float *uv, *un, *ue;
+
+float quart = 0.25;
+float half = 0.5;
+float one = 1.0;
+float two = 2.0;
+float p95 = 0.95;
+float p105 = 1.05;
+
+float sp, vs;
+float amax = 0.0;
+
+float alpha = 0.1;      /* 1st triangle has pulse width = 2*alpha*trise */
+float betadeep = 0.2;       /* 2nd triangle has amplitude = beta*A (z0>dmax)*/
+float betashal = 0.5;       /* 2nd triangle has amplitude = beta*A (z0<dmin)*/
+float beta, dbdd;
+
+float dmin = 4.0;
+float dmax = 6.0;
+
+zapit(stf,nt);
+
+ip0 = i + j*(brm->npstk);
+ip1 = ip0 + 1;
+ip2 = ip0 + (brm->npstk);
+ip3 = ip2 + 1;
+
+sp = quart*(brm->slip[ip0] + brm->slip[ip1] + brm->slip[ip2] + brm->slip[ip3]);
+vs = quart*(brm->sv[ip0]   + brm->sv[ip1]   + brm->sv[ip2]   + brm->sv[ip3]  );
+
+tp = quart*(brm->tdur[ip0] + brm->tdur[ip1] + brm->tdur[ip2] + brm->tdur[ip3]);
+tr = quart*(brm->rist[ip0] + brm->rist[ip1] + brm->rist[ip2] + brm->rist[ip3]);
+t2 = quart*(brm->t2[ip0]   + brm->t2[ip1]   + brm->t2[ip2]   + brm->t2[ip3]  );
+
+if(brm->robstf == 1)
+   {
+   dbdd = (betadeep - betashal)/(dmax-dmin);
+
+   if((*z0) >= dmax)
+      beta = betadeep;
+   else if((*z0) < dmax && (*z0) > dmin)
+      beta = betadeep - (dmax-(*z0))*dbdd;
+   else
+      beta = betashal;
+
+   tp = two*alpha*tr;
+   t2 = (one - half*beta)*tp;
+   }
+
+if(tp <= (*dt) || tr <= (*dt) || t2 <= (*dt))  /* no STF needed */
+   {
+   sum_nostf(s,u,&sp,nt);
+   return;
+   }
+
+if(t2 >= tp)
+   t2 = p95*tp;
+if(tr <= tp)
+   tr = p105*tp;
+
+tp2 = half*tp;
+invtp = one/tp;
+c0 = (one - invtp*t2);
+c1 = c0/(tr - t2);
+nstf = (int)(tr/(*dt) + 1.0);
+
+sum = 0.0;
+for(it=0;it<nstf;it++)
+   {
+   tt = it*(*dt);
+
+   if(tt < tp2)
+      stf[it] = invtp*tt;
+   else if(tt < t2)
+      stf[it] = one - invtp*tt;
+   else if(tt < tr)
+      stf[it] = c0 - c1*(tt - t2);
+
+   sum = sum + (*dt)*stf[it];
+   if(stf[it] > amax)
+      amax = stf[it];
+   }
+
+if(sum <= 0.0)
+   return;
+
+/* scale STF by slip and add factor of dt to prenormalize convolution */
+sum = (*dt)*sp/sum;
+for(it=0;it<nstf;it++)
+   stf[it] = stf[it]*sum;
+
+/*
+fprintf(stderr,"sp=%13.5e %13.5e vs=%13.5e %13.5e\n",sp,vs*(t2 - 0.5*tp + tr*(1.0 - t2/tp)),vs,sp*amax*sum);
+*/
+
+/*
+
+if(i==0 && j==0)
+   {
+   fpw = fopen("stf_file","w");
+   fprintf(fpw,"stf stf %13.5e %13.5e %13.5e\n",tr,tp,t2);
+   fprintf(fpw,"%d %13.5e\n",nstf,(*dt));
+   for(it=0;it<nstf;it++)
+      fprintf(fpw,"%13.5e\n",stf[it]);
+   fclose(fpw);
+   }
+*/
+
+do_cnvlv(s,u,nt,stf,nstf);
+}
+
+void read_beroza(struct beroza *brm,char *rfile,float *len2)
+{
+FILE *fopfile(), *fpr;
+int i, j, k, kp;
+char string[256];
+
+if(((brm->npstk) - 1)%(brm->inc_stk) != 0)
+   {
+   fprintf(stderr,"***input nodes along strike are not integer multiple of desired resampling-\n");
+   fprintf(stderr,"     inc_stk   =%d\n",(brm->inc_stk));
+   fprintf(stderr,"     (npstk-1) =%d\n",(brm->npstk)-1);
+   fprintf(stderr,"     exiting...\n");
+   exit(-1);
+   }
+
+if(((brm->npdip) - 1)%(brm->inc_dip) != 0)
+   {
+   fprintf(stderr,"***input nodes down dip are not integer multiple of desired resampling-\n");
+   fprintf(stderr,"     inc_dip   =%d\n",(brm->inc_dip));
+   fprintf(stderr,"     (npdip-1) =%d\n",(brm->npdip)-1);
+   fprintf(stderr,"     exiting...\n");
+   exit(-1);
+   }
+
+brm->npstk = (int)(((brm->npstk) - 1)/(brm->inc_stk)) + 1;
+brm->npdip = (int)(((brm->npdip) - 1)/(brm->inc_dip)) + 1;
+
+brm->as   = (float *) check_malloc ((brm->npstk)*(brm->npdip)*sizeof(float));
+brm->dd   = (float *) check_malloc ((brm->npstk)*(brm->npdip)*sizeof(float));
+brm->slip = (float *) check_malloc ((brm->npstk)*(brm->npdip)*sizeof(float));
+brm->sv   = (float *) check_malloc ((brm->npstk)*(brm->npdip)*sizeof(float));
+brm->rupt = (float *) check_malloc ((brm->npstk)*(brm->npdip)*sizeof(float));
+brm->rist = (float *) check_malloc ((brm->npstk)*(brm->npdip)*sizeof(float));
+brm->tdur = (float *) check_malloc ((brm->npstk)*(brm->npdip)*sizeof(float));
+brm->t2   = (float *) check_malloc ((brm->npstk)*(brm->npdip)*sizeof(float));
+
+fpr = fopfile(rfile,"r");
+for(j=0;j<(brm->npdip);j++)
+   {
+   for(i=0;i<(brm->npstk);i++)
+      {
+      k = i + j*(brm->npstk);
+
+      fgets(string,256,fpr);
+      sscanf(string,"%f %f %f %f %f %f %f %f",&brm->dd[k],
+                                                 &brm->as[k],
+                                                 &brm->slip[k],
+                                                 &brm->sv[k],
+                                                 &brm->rupt[k],
+                                                 &brm->rist[k],
+                                                 &brm->tdur[k],
+                                                 &brm->t2[k]);
+
+      if((brm->generic_risetime) > 0.0)
+         {
+         brm->rist[k] = (brm->generic_risetime);
+         brm->tdur[k] = (brm->generic_pulsedur);
+         brm->t2[k] = (brm->generic_t2);
+         }
+
+      brm->as[k] = brm->as[k] - (*len2);
+
+      if(i != (brm->npstk)-1) /* skip inc_stk-1 lines */
+         {
+         for(kp=0;kp<(brm->inc_stk)-1;kp++)
+            fgets(string,256,fpr);
+         }
+      }
+
+   if(j != (brm->npdip)-1) /* skip ((brm->inc_dip)-1)*(((brm->npstk)-1)*(brm->inc_stk) + 1) lines */
+      {
+      for(kp=0;kp<((brm->inc_dip)-1)*(((brm->npstk)-1)*(brm->inc_stk) + 1);kp++)
+         fgets(string,256,fpr);
+      }
+   }
+fclose(fpr);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/defs.h
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/defs.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/defs.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,33 @@
+#define         NTMAX              10000
+#define         SOMERVILLE_FLAG    1
+#define         MAI_FLAG           2
+#define         MINSLIP            1.0e-02
+
+#define   DHYPO_FRAC       0.75     /* hypo at 0.75 down-dip width */
+#define   SHYPO_STEP       20.0     /* hypo spacing at 20 km along strike */
+#define   SHYPO_MIN_OFF    1.0      /* hypos start at 1.0 km along strike */
+#define   SLIPS_TO_HYPOS   2    /* no. slip models = 2 times no. of hypos */
+
+#define   U1FLAG   1
+#define   U2FLAG   2
+#define   U3FLAG   3
+
+#define RDONLY_FLAGS    O_RDONLY
+#define RDWR_FLAGS      O_RDWR
+#define CROPTR_FLAGS    O_CREAT | O_TRUNC | O_RDWR
+
+#if _FILE_OFFSET_BITS == 64
+
+#undef RDONLY_FLAGS
+#undef RDWR_FLAGS
+#undef CROPTR_FLAGS
+
+#define RDONLY_FLAGS    O_RDONLY | O_LARGEFILE
+#define RDWR_FLAGS      O_RDWR | O_LARGEFILE
+#define CROPTR_FLAGS    O_CREAT | O_TRUNC | O_RDWR | O_LARGEFILE
+
+#endif
+
+#define SWAP_FLAG -12345
+#define MAX_VAR_LIST 100
+#define TAP_PERC 0.05

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/fourg.f
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/fourg.f	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/fourg.f	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,145 @@
+      subroutine fourg (data,n,isign,work)
+c     cooley-tukey fast fourier transform in usasi basic fortran.
+c     one-dimensional transform of complex data, arbitrary number of
+c     points.  n points can be transformed in time proportional to
+c     n*log(n) (for n non-prime), whereas other methods take n**2 time.
+c     furthermore, because fewer arithmetic operations are performed,
+c     less error is built up.  the transform done is--
+c     dimension data(n),transform(n),work(n)
+c     complex data,transform,work
+c     transform(k) = sum(data(j)*exp(isign*2*pi*i*(j-1)*(k-1)/n)),
+c     summed from j = 1 to n for all k from 1 to n.  the transform
+c     values are returned to data, replacing the input.  n may be any
+c     positive number, but it should be non-prime for speed.  isign =
+c     +1 or -1.  a -1 transform followed by a +1 one (or vice versa)
+c     returns n times the original data.  work is a one-dimensional
+c     complex array of length n used for working storage.
+c     running time is proportional to n * (sum of the prime factors of
+c     n).  for example, n = 1960, time is t0 * 1960 * (2+2+2+5+7+7).
+c     naive methods directly implementing the summation run in time
+c     proportional to n**2.  an upper bound for the rms relative error
+c     is 3 * 2**(-b) * sum(f**1.5), where b is the number of bits in
+c     the floating point fraction and the sum is over the prime
+c     factors of n.  written by norman brenner, mit lincoln laboratory,
+c     august 1968.  see--ieee transactions on audio and e
+c     (june 1967), special issue on the fast fourier transform.
+      dimension data(1), work(1), ifact(32)
+      twopi=6.283185307*float(isign)
+c     factor n into its prime factors, nfact in number.  for example,
+c     for n = 1960, nfact = 6 and ifact(if) = 2, 2, 2, 5, 7 and 7.
+      if=0
+      npart=n
+      do 50 id=1,n,2
+      idiv=id
+      if (id-1) 10,10,20
+ 10   idiv=2
+ 20   iquot=npart/idiv
+      if (npart-idiv*iquot) 40,30,40
+ 30   if=if+1
+      ifact(if)=idiv
+      npart=iquot
+
+      go to 20
+ 40   if (iquot-idiv) 60,60,50
+ 50   continue
+ 60   if (npart-1) 80,80,70
+ 70   if=if+1
+      ifact(if)=npart
+ 80   nfact=if
+c     shuffle the data array by reversing the digits of the index.
+c     replace data(i) by data(irev) for all i from 1 to n.  irev-1 is
+c     the integer whose digit representation in the multi-radix
+c     notation of factors ifact(if) is the reverse of the r
+c     of i-1.  for example, if all ifact(if) = 2, then for i-1 = 11001,
+c     irev-1 = 10011.  a work array of length n is needed.
+      ip0=2
+      ip3=ip0*n
+      iwork=1
+      i3rev=1
+      do 110 i3=1,ip3,ip0
+      work(iwork)=data(i3rev)
+      work(iwork+1)=data(i3rev+1)
+      ip2=ip3
+      do 100 if=1,nfact
+      ip1=ip2/ifact(if)
+      i3rev=i3rev+ip1
+      if (i3rev-ip2) 110,110,90
+ 90   i3rev=i3rev-ip2
+ 100  ip2=ip1
+ 110  iwork=iwork+ip0
+      iwork=1
+      do 120 i3=1,ip3,ip0
+      data(i3)=work(iwork)
+      data(i3+1)=work(iwork+1)
+ 120  iwork=iwork+ip0
+c     phase-shifted fourier transform of length ifact(if).
+c     iprod=ip1/ip0
+c     irem=n/(ifact(if)*iprod)
+c     dimension data(iprod,ifact(if),irem),work(ifact(if))
+c     complex data,work
+c     data(i1,j2,i3) = sum(data(i1,i2,i3) * w**(i2-1)), summed over
+c     i2 = 1 to ifact(if) for all i1 from 1 to iprod, j2 from 1 to
+
+c     ifact(if) and i3 from 1 to irem.
+c     w = exp(isign*2*pi*i*(i1-1+iprod*(j2-1))/(iprod*ifact(if))).
+      if=0
+      ip1=ip0
+ 130  if (ip1-ip3) 140,240,240
+ 140  if=if+1
+      ifcur=ifact(if)
+      ip2=ip1*ifcur
+      theta=twopi/float(ifcur)
+      sinth=sin(theta/2.)
+      rootr=-2.*sinth*sinth
+c     cos(theta)-1, for accuracy
+      rooti=sin(theta)
+      theta=twopi/float(ip2/ip0)
+      sinth=sin(theta/2.)
+      wstpr=-2.*sinth*sinth
+      wstpi=sin(theta)
+      wminr=1.
+      wmini=0.
+      do 230 i1=1,ip1,ip0
+      if (ifcur-2) 150,150,170
+ 150  do 160 i3=i1,ip3,ip2
+      j0=i3
+      j1=i3+ip1
+      tempr=wminr*data(j1)-wmini*data(j1+1)
+      tempi=wminr*data(j1+1)+wmini*data(j1)
+      data(j1)=data(j0)-tempr
+      data(j1+1)=data(j0+1)-tempi
+      data(j0)=data(j0)+tempr
+ 160  data(j0+1)=data(j0+1)+tempi
+      go to 220
+ 170  iwmax=ip0*ifcur
+      do 210 i3=i1,ip3,ip2
+      i2max=i3+ip2-ip1
+      wr=wminr
+      wi=wmini
+      do 200 iwork=1,iwmax,ip0
+      i2=i2max
+      sumr=data(i2)
+      sumi=data(i2+1)
+
+ 180  i2=i2-ip1
+      tempr=sumr
+      sumr=wr*sumr-wi*sumi+data(i2)
+      sumi=wr*sumi+wi*tempr+data(i2+1)
+      if (i2-i3) 190,190,180
+ 190  work(iwork)=sumr
+      work(iwork+1)=sumi
+      tempr=wr
+      wr=wr*rootr-wi*rooti+wr
+ 200  wi=tempr*rooti+wi*rootr+wi
+      iwork=1
+      do 210 i2=i3,i2max,ip1
+      data(i2)=work(iwork)
+      data(i2+1)=work(iwork+1)
+ 210  iwork=iwork+ip0
+ 220  tempr=wminr
+      wminr=wminr*wstpr-wmini*wstpi+wminr
+ 230  wmini=tempr*wstpi+wmini*wstpr+wmini
+      ip1=ip2
+      go to 130
+ 240  return
+      end

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/function.h
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/function.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/function.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,61 @@
+void *check_malloc(size_t);
+void *check_realloc(void *, size_t);
+FILE *fopfile(char*, char*);
+int opfile_ro(char *);
+int opfile(char *);
+int croptrfile(char *);
+int reed(int, void *, int);
+int rite(int, void *, int);
+
+void fortran_rite(int ,int , ...);
+void conv2vrup(struct velmodel *,struct velmodel *,float *,float *,float *,float *,float *);
+void get_ard_srf(struct standrupformat *,int,int,float *,float *,float *,float *,float *,float *,float *,struct geoprojection *);
+void get_radazi(float *,float *,float *,float *,float *,float *,float *,float *,float *,float *);
+void set_ne(float *,float *,float *,float *,float *,float *);
+void set_ll(float *,float *,float *,float *,float *,float *);
+
+void get_gfpars(struct gfparam *);
+void find_4gf(struct gfparam,struct gfheader *,float *,float *,float *,float *);
+void read_4gf(char *,char *,float *,int,struct gfheader *,struct gfparam,float *,int *,float *,float *);
+void read_gf(char *,char *,float *,int,struct gfheader *,struct gfparam);
+
+void rand_init(float *,float *,int *,int,int,int,int,int,int);
+double gaus_rand(float *,float *,int *);
+double sfrand(int *);
+
+void sum_4gf(float *,int,float *,struct gfheader *,int,int,float *,float *,float *,int,struct mechparam);
+void timeshift_gf(float *,int,float *,struct gfheader *,int,float *,float *,int);
+void mech_4gf(float *,float *,struct gfheader *,struct gfparam gfp,int,struct mechparam,float *,float *);
+
+void read_beroza(struct beroza *,char *rfile,float *);
+void get_brmpars(struct beroza *,int,int,float *,float *,float *,float *);
+void beroza_stf(struct beroza *,int,int,float *,float *,float *,int,float *,float *);
+
+void read_okumura(struct okumura *,char *rfile,float *);
+void get_ormpars(struct okumura *,int,int,float *,float *,float *,float *);
+void okumura_stf(struct okumura *,int,int,float *,float *,float *,int,float *);
+
+void read_gene(struct gene *,char *rfile,float *);
+void get_grmpars(struct gene *,int,int,float *,float *,float *,float *,float *);
+void gene_stf(struct gene *,int,int,float *,float *,float *,int,float *);
+
+void read_rob(struct rob *,char *rfile,float *);
+void get_rrmpars(struct rob *,int,int,float *,float *,float *,float *,float *,float *);
+void rob_stf(struct rob *,int,int,float *,float *,float *,int,float *,float *);
+int gen_rob_stf(struct rob *,int,int,float *,int,float *,float *);
+
+void get_srfpars(struct standrupformat *,int,int,float *,float *,float *,float *,float *,struct mechparam *);
+void get_srfparsOLD(struct standrupformat *,int,int,float *,float *,float *,int,int,struct mechparam *);
+void srf_stf(struct standrupformat *,int,int,float *,float *,float *,int,float *,struct mechparam,float *);
+
+char *skipval(int,char *);
+void do_cnvlv(float *,float *,int,float *,int);
+void sum_nostf(float *,float *,float *,int);
+void write_seis(char *,char *,char *,float *,float *,int,float *,int);
+
+void swap_in_place(int,char *);
+
+double nt_tol(float,int);
+
+void getname_gf(char *str,char *gfname,struct gfheader *gfh,struct gfparam gfpar);
+int check_name(char *str,char *list,int n,int blen);

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/gen_gflist.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/gen_gflist.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/gen_gflist.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,253 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+#define MAXLINE 256
+#define MAXFILE 1000000
+#define INCFILE 1000
+
+main(int ac,char **av)
+{
+FILE *fopfile(), *fplist;
+struct gfheader gfhead[4];
+float maxgft;
+struct gfparam gfpar;
+int kg, ig, kfalloc, nfile;
+
+float kperd_n, kperd_e;
+float elon = -118.0;
+float elat = 34.0;
+float slat, slon, snorth, seast;
+double e2, den, g2, lat0;
+
+float rt = 0.0;
+float strike = 0.0;
+float dip = 90.0;
+float rake = 180.0;
+float dtop = 0.1;
+
+float len, wid;
+int i, j, k, l, ip, ip0;
+
+struct standrupformat srf;
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+struct mechparam mechpar;
+int maxmech;
+
+float vslip;
+
+int apv_off = 0;
+int nseg = -1;
+int inbin = 0;
+
+int kp;
+float len2, ds0, dd0, dsf, ddf, s2;
+int ntsum, maxnt, it, ntp2;
+float mindt;
+float x0, y0, z0, dd;
+int nsubstk, nsubdip;
+int nfinestk = 1;
+int nfinedip = 1;
+
+float scale, arg, cosD, sinD;
+float azi, rng, deast, dnorth;
+int ncomp = 3;
+
+float *space;
+float dtout = -1.0;
+
+int fdw;
+char gfpath[128], gfname[64];
+char rupmodfile[128], filelist[256];
+char string[MAXLINE], *listbuf;
+
+double rperd = 0.017453293;
+int latloncoords = 0;
+int list_flag = 0;
+
+sprintf(gfpar.gftype,"3d");
+
+setpar(ac, av);
+getpar("latloncoords","d",&latloncoords);
+
+if(latloncoords == 1)
+   {
+   getpar("elat","f",&elat);
+   getpar("elon","f",&elon);
+   mstpar("slat","f",&slat);
+   mstpar("slon","f",&slon);
+   }
+else
+   {
+   mstpar("snorth","f",&snorth);
+   mstpar("seast","f",&seast);
+   }
+
+mstpar("rupmodfile","s",rupmodfile);
+getpar("nseg","d",&nseg);
+getpar("inbin","d",&inbin);
+
+mstpar("filelist","s",filelist);
+
+mstpar("gftype","s",gfpar.gftype);
+
+if((strncmp(gfpar.gftype,"fk",2) == 0) || (strncmp(gfpar.gftype,"FK",2) == 0))
+   {
+   gfpar.flag3d = 0;
+   gfpar.nc = 8;
+   mstpar("gflocs","s",gfpar.gflocs);
+   mstpar("gftimes","s",gfpar.gftimes);
+   }
+else if((strncmp(gfpar.gftype,"3d",2) == 0) || (strncmp(gfpar.gftype,"3D",2) == 0))
+   {
+   gfpar.flag3d = 1;
+   gfpar.nc = 18;
+   mstpar("gflocs","s",gfpar.gflocs);
+   mstpar("gfrange_tolerance","f",&gfpar.rtol);
+   }
+else
+   {
+   fprintf(stderr,"gftype= %s invalid option, exiting...\n",gfpar.gftype);
+   exit(-1);
+   }
+
+mstpar("gfpath","s",gfpath);
+mstpar("gfname","s",gfname);
+
+endpar();
+
+kfalloc = INCFILE;
+listbuf = (char *) check_malloc (kfalloc*MAXFILE*sizeof(char));
+
+maxmech = 1;
+mechpar.nmech = 1;
+mechpar.flag[0] = U1FLAG;
+mechpar.flag[1] = 0;
+mechpar.flag[2] = 0;
+
+maxmech = 3;
+nfinestk = 1;
+nfinedip = 1;
+
+read_srf(&srf,rupmodfile,inbin);
+prect_ptr = &srf.srf_prect;
+prseg_ptr = prect_ptr->prectseg;
+apnts_ptr = &srf.srf_apnts;
+apval_ptr = apnts_ptr->apntvals;
+
+if(nseg < 0)  /* do all POINTS */
+   {
+   nsubstk = srf.srf_apnts.np;
+   nsubdip = 1;
+
+   len = 10.0;
+   wid = 10.0;
+
+   apv_off = 0;
+   }
+else
+   {
+   elon = prseg_ptr[nseg].elon;
+   elat = prseg_ptr[nseg].elat;
+   strike = prseg_ptr[nseg].stk;
+   dip = prseg_ptr[nseg].dip;
+   dtop = prseg_ptr[nseg].dtop;
+
+   nsubstk = prseg_ptr[nseg].nstk;
+   nsubdip = prseg_ptr[nseg].ndip;
+
+   len = prseg_ptr[nseg].flen;
+   wid = prseg_ptr[nseg].fwid;
+
+   /* reset POINTS pointer to appropriate segment */
+
+   apv_off = 0;
+   for(i=0;i<nseg;i++)
+      apv_off = apv_off + prseg_ptr[i].nstk*prseg_ptr[i].ndip;
+
+   apval_ptr = apval_ptr + apv_off;
+   }
+
+len2 = 0.5*len;
+
+arg = dip*rperd;
+cosD = cos(arg);
+sinD = sin(arg);
+
+get_gfpars(&gfpar);
+
+if(latloncoords) /* calculate lat,lon to km conversions */
+   set_ne(&elon,&elat,&slon,&slat,&snorth,&seast);
+
+/* Calculate subfault responses */
+
+ds0 = len/nsubstk;
+dd0 = wid/nsubdip;
+
+dsf = ds0/nfinestk;
+ddf = dd0/nfinedip;
+
+for(i=0;i<4;i++)
+   {
+   gfhead[i].id = -1;  /* initialize: -1 means none read yet */
+   gfhead[i].ir = -1;  /* initialize: -1 means none read yet */
+   }
+
+nfile = 0;
+for(i=0;i<nsubstk;i++)
+   {
+   for(j=0;j<nsubdip;j++)
+      {
+      ip0 = i + j*nsubstk;
+
+      fprintf(stderr,"ip0= %8d/%d nfile= %8d\n",ip0,nsubdip*nsubstk,nfile);
+
+      for(k=0;k<nfinestk;k++)
+	 {
+	 x0 = i*ds0 + (k+0.5)*dsf - len2;
+
+	 for(l=0;l<nfinedip;l++)
+	    {
+	    dd = j*dd0 + (l+0.5)*ddf;
+	    y0 = dd*cosD;
+	    z0 = dtop + dd*sinD;
+
+	    kp = l + k*nfinedip;
+	    ip = kp + (j + i*nsubdip)*nfinestk*nfinedip;
+
+            get_srfpars(&srf,apv_off,ip0,&rt,&vslip,&strike,&dip,&rake,&mechpar);
+	    get_ard_srf(&srf,apv_off,ip0,&azi,&rng,&z0,&deast,&dnorth,&slon,&slat);
+	    find_4gf(gfpar,gfhead,&rng,&z0,&deast,&dnorth);
+
+	    for(ig=0;ig<4;ig++)
+	       {
+               getname_gf(string,gfname,&gfhead[ig],gfpar);
+
+	       list_flag = check_name(string,listbuf,nfile,MAXLINE);
+
+               if(list_flag == 0)  /* new file */
+	          {
+		  if(nfile+1 > kfalloc)
+		     {
+		     kfalloc = kfalloc + INCFILE;
+                     listbuf = (char *) check_realloc (listbuf,kfalloc*MAXLINE*sizeof(char));
+		     }
+
+                  strcpy(listbuf+nfile*MAXLINE,string);
+		  nfile++;
+		  }
+	       }
+	    }
+         }
+      }
+   }
+
+fplist = fopfile(filelist,"w");
+for(ig=0;ig<nfile;ig++)
+   fprintf(fplist,"%s/%s\n",gfpath,listbuf+ig*MAXLINE);
+fclose(fplist);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/gene_rupm.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/gene_rupm.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/gene_rupm.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,158 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+void get_grmpars(struct gene *grm,int i,int j,float *xp,float *zp,float *rt,float *vs,float *rk)
+{
+float xx, zz;
+int ip;
+
+ip = i + j*(grm->nstk);
+
+xx = *xp - grm->shypo;
+zz = *zp - grm->dhypo;
+
+*rt = sqrt(xx*xx + zz*zz)/grm->vrup[ip];
+*rk = grm->rake[ip];
+*vs = grm->slip[ip];
+}
+
+void gene_stf(struct gene *grm,int i,int j,float *s,float *u,float *stf,int nt,float *dt)
+{
+FILE *fpw;
+int it, k, ntri, nstf;
+int ip, itdel;
+float t2, tt, amp;
+float sum;
+
+float half = 0.5;
+float one = 1.0;
+
+zapit(stf,nt);
+
+ip = i + j*(grm->nstk);
+
+t2 = 0.5*grm->trise;
+ntri = (int)(grm->trise/(*dt) + one);
+
+for(k=0;k<grm->nt[ip];k++)
+   {
+   itdel = (int)((k*grm->tdel)/(*dt) + half);
+   amp = grm->swgt[k + grm->maxtw*ip];
+
+   for(it=0;it<ntri;it++)
+      {
+      tt = it*(*dt);
+
+      if(tt <= t2)
+         stf[it+itdel] = stf[it+itdel] + amp*tt;
+      else if(tt <= grm->trise)
+         stf[it+itdel] = stf[it+itdel] + amp*(grm->trise - tt);
+      }
+   }
+
+nstf = nt-1;
+while(stf[nstf] == (float)(0.0) && nstf)
+   nstf--;
+
+if(nstf == 0)
+   {
+   sum_nostf(s,u,&(grm->slip[ip]),nt);
+   return;
+   }
+
+if(nstf < nt-1)
+   nstf = nstf + 2;;
+
+sum = 0.0;
+for(it=0;it<nstf;it++)
+   sum = sum + (*dt)*stf[it];
+if(sum <= 0.0)
+   return;
+
+/* scale STF by slip and add factor of dt to prenormalize convolution */
+sum = (*dt)*(grm->slip[ip])/sum;
+for(it=0;it<nstf;it++)
+   stf[it] = stf[it]*sum;
+
+/*
+if(i==0 && j==0)
+   {
+   fpw = fopen("stf_file","w");
+   fprintf(fpw,"stf stf");
+
+   for(k=0;k<grm->nt[ip];k++)
+      fprintf(fpw," %4.0f",grm->swgt[k + grm->maxtw*ip]);
+   fprintf(fpw,"\n");
+
+   fprintf(fpw,"%d %13.5e\n",nstf,(*dt));
+   for(it=0;it<nstf;it++)
+      fprintf(fpw,"%13.5e\n",stf[it]);
+   fclose(fpw);
+   }
+*/
+
+do_cnvlv(s,u,nt,stf,nstf);
+}
+
+void read_gene(struct gene *grm,char *rfile,float *len2)
+{
+FILE *fopfile(), *fpr;
+int i, j, k, it;
+char string[256], *sptr;
+
+fpr = fopfile(rfile,"r");
+
+fgets(string,256,fpr);
+sscanf(string,"%d %d %f %f %f %f %f %f %d",&grm->nstk,
+                                           &grm->ndip,
+                                           &grm->flen,
+                                           &grm->fwid,
+                                           &grm->shypo,
+                                           &grm->dhypo,
+                                           &grm->trise,
+                                           &grm->tdel,
+                                           &grm->maxtw);
+
+grm->dlen = (grm->flen)/(grm->nstk);
+grm->dwid = (grm->fwid)/(grm->ndip);
+
+*len2 = 0.5*(grm->flen);
+
+grm->as   = (float *) check_malloc ((grm->nstk)*(grm->ndip)*sizeof(float));
+grm->dd   = (float *) check_malloc ((grm->nstk)*(grm->ndip)*sizeof(float));
+grm->slip = (float *) check_malloc ((grm->nstk)*(grm->ndip)*sizeof(float));
+grm->rake = (float *) check_malloc ((grm->nstk)*(grm->ndip)*sizeof(float));
+grm->vrup = (float *) check_malloc ((grm->nstk)*(grm->ndip)*sizeof(float));
+grm->nt   = (int *) check_malloc ((grm->nstk)*(grm->ndip)*sizeof(int));
+grm->swgt = (float *) check_malloc ((grm->maxtw)*(grm->nstk)*(grm->ndip)*sizeof(float));
+
+for(j=0;j<(grm->maxtw)*(grm->nstk)*(grm->ndip);j++)
+   grm->swgt[j] = 0.0;
+
+for(j=0;j<(grm->ndip);j++)
+   {
+   for(i=0;i<(grm->nstk);i++)
+      {
+      k = i + j*(grm->nstk);
+
+      fgets(string,256,fpr);
+      sscanf(string,"%f %f %f %f %f %d",&grm->as[k],
+                                        &grm->dd[k],
+                                        &grm->slip[k],
+                                        &grm->rake[k],
+                                        &grm->vrup[k],
+                                        &grm->nt[k]);
+
+      sptr = string;
+      sptr = skipval(6,sptr);
+
+      for(it=0;it<grm->nt[k];it++)
+	 {
+         sscanf(sptr,"%f",&grm->swgt[it + (grm->maxtw)*k]);
+         sptr = skipval(1,sptr);
+	 }
+      }
+   }
+fclose(fpr);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/geoproj_subs.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/geoproj_subs.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/geoproj_subs.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,197 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+#define         RPERD           0.017453292
+#define         ERAD            6378.139
+#define         FLAT_CONST      298.256
+
+void gcproj(float *xf,float *yf,float *rlon,float *rlat,float *ref_rad,double *g0,double *b0,double *amat,double *ainv,int gflag)
+{
+double xp, yp, zp;
+double xg, yg, zg;
+double arg;
+double cosG, sinG;
+double cosB, sinB;
+
+double rperd = RPERD;
+
+if(gflag == 0)
+   {
+   arg = (*xf)/(*ref_rad) - (*b0);
+   cosB = cos(arg);
+   sinB = sin(arg);
+
+   arg = (*yf)/(*ref_rad) - (*g0);
+   cosG = cos(arg);
+   sinG = sin(arg);
+
+   arg = sqrt(1.0 + sinB*sinB*sinG*sinG);
+   xp = sinG*cosB*arg;
+   yp = sinB*cosG*arg;
+   zp = sqrt(1.0 - xp*xp - yp*yp);
+
+   xg = xp*amat[0] + yp*amat[1] + zp*amat[2];
+   yg = xp*amat[3] + yp*amat[4] + zp*amat[5];
+   zg = xp*amat[6] + yp*amat[7] + zp*amat[8];
+
+   arg = sqrt(xg*xg + yg*yg)/zg;
+   (*rlat) = 90.0 - atan(arg)/rperd;
+
+   if(xg != (double)(0.0))
+      {
+      arg = yg/xg;
+      (*rlon) = atan(arg)/rperd;
+      }
+   else
+      (*rlon) = 0.0;
+
+   if(yg < (double)(0.0))
+      (*rlon) = (*rlon) - 180.0;
+   }
+else
+   {
+   arg = (*rlon)*rperd;
+   cosG = cos(arg);
+   sinG = sin(arg);
+
+   arg = (90.0 - (*rlat))*rperd;
+   cosB = cos(arg);
+   sinB = sin(arg);
+
+   xg = sinB*cosG;
+   yg = sinB*sinG;
+   zg = cosB;
+
+   xp = xg*ainv[0] + yg*ainv[1] + zg*ainv[2];
+   yp = xg*ainv[3] + yg*ainv[4] + zg*ainv[5];
+   zp = xg*ainv[6] + yg*ainv[7] + zg*ainv[8];
+
+   sinG = xp/sqrt(1.0 - yp*yp);
+   sinB = yp/sqrt(1.0 - xp*xp);
+
+   *xf = (double)(*ref_rad)*(asin(sinB)+(*b0));
+   *yf = (double)(*ref_rad)*(asin(sinG)+(*g0));
+   }
+}
+
+void gen_matrices(double *amat,double *ainv,float *alpha,float *ref_lon,float *ref_lat)
+{
+double arg;
+double cosA, sinA;
+double cosT, sinT;
+double cosP, sinP;
+double det;
+
+double rperd = RPERD;
+
+arg = (double)(*alpha)*rperd;
+cosA = cos(arg);
+sinA = sin(arg);
+
+arg = (double)(90.0-*ref_lat)*rperd;
+cosT = cos(arg);
+sinT = sin(arg);
+
+arg = (double)(*ref_lon)*rperd;
+cosP = cos(arg);
+sinP = sin(arg);
+
+amat[0] = cosA*cosT*cosP + sinA*sinP;
+amat[1] = sinA*cosT*cosP - cosA*sinP;
+amat[2] = sinT*cosP;
+amat[3] = cosA*cosT*sinP - sinA*cosP;
+amat[4] = sinA*cosT*sinP + cosA*cosP;
+amat[5] = sinT*sinP;
+amat[6] = -cosA*sinT;
+amat[7] = -sinA*sinT;
+amat[8] = cosT;
+
+det = amat[0]*(amat[4]*amat[8] - amat[7]*amat[5])
+    - amat[1]*(amat[3]*amat[8] - amat[6]*amat[5])
+    + amat[2]*(amat[3]*amat[7] - amat[6]*amat[4]);
+
+det = 1.0/det;
+ainv[0] = det*amat[0];
+ainv[1] = det*amat[3];
+ainv[2] = det*amat[6];
+ainv[3] = det*amat[1];
+ainv[4] = det*amat[4];
+ainv[5] = det*amat[7];
+ainv[6] = det*amat[2];
+ainv[7] = det*amat[5];
+ainv[8] = det*amat[8];
+}
+
+void geocen(float *r,double x)
+{
+*r = atan((1.0 - (1.0/FLAT_CONST))*tan(x));
+fprintf(stderr,"%20.10f %20.10f %20.10f\n",*r,x,atan((1.0 - (1.0/FLAT_CONST))*tan(x)));
+}
+
+void set_g2(float *g2,float *fc)
+{
+float f;
+
+f = (1.0)/(*fc);
+*g2 = ((2.0)*f - f*f)/(((1.0) - f)*((1.0) - f));
+}
+
+void latlon2km(float *arg,float *latkm,float *lonkm,float *rc,float *g2)
+{
+float cosA, sinA, g2s2, den;
+
+float fone = 1.0;
+float ftwo = 2.0;
+
+cosA = cos((*arg));
+sinA = sin((*arg));
+g2s2 = (*g2)*sinA*sinA;
+
+den = sqrt((fone)/((fone) + g2s2));
+*lonkm = (*rc)*cosA*den;
+*latkm = (*rc)*(sqrt((fone) + g2s2*((ftwo) + (*g2))))*den*den*den;
+}
+
+void set_geoproj(struct sgtmaster *sgtmast,struct geoprojection *geop)
+{
+float latavg, xlen, ylen;
+
+geop->geoproj = sgtmast->geoproj;
+geop->modellon = sgtmast->modellon;
+geop->modellat = sgtmast->modellat;
+geop->modelrot = sgtmast->modelrot;
+geop->xshift = sgtmast->xshift;
+geop->yshift = sgtmast->yshift;
+
+geop->rperd = RPERD;
+geop->erad = ERAD;
+
+xlen = -2.0*geop->xshift;
+ylen = -2.0*geop->yshift;
+
+if(geop->geoproj == 0)
+   {
+   geop->center_origin = 0;  /* assume for now */
+   geop->cosR = cos((geop->modelrot)*(geop->rperd));
+   geop->sinR = sin((geop->modelrot)*(geop->rperd));
+
+   geop->fc = FLAT_CONST;
+   geop->radc = (geop->erad)*(geop->rperd);
+   set_g2(&geop->g2,&geop->fc);
+
+   latavg = geop->modellat;
+   if(geop->center_origin == 0)  /* backward compatible */
+      latavg = geop->modellat - 0.5*(xlen*geop->sinR + ylen*geop->cosR)/111.20;
+
+   geocen(&latavg,(double)(latavg)*(geop->rperd));
+   latlon2km(&latavg,&geop->kmlat,&geop->kmlon,&geop->radc,&geop->g2);
+   }
+else if(geop->geoproj == 1)
+   {
+   gen_matrices(geop->amat,geop->ainv,&geop->modelrot,&geop->modellon,&geop->modellat);
+
+   geop->g0 = (double)(0.5*ylen)/(double)(geop->erad);
+   geop->b0 = (double)(0.5*xlen)/(double)(geop->erad);
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/get_ruptime.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/get_ruptime.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/get_ruptime.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,375 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+void conv2vrup(char *vfile,struct velmodel *vm,float *dip,float *ztop,float *wid,float *rvf,float *shal_vr)
+{
+FILE *fopfile(), *fpr;
+int i, j, k;
+float invsinA, dep, zbot;
+char string[256];
+
+float rperd = 0.017453293;
+float dmin = 4.0;
+float dmax = 6.0;
+float rvfac;
+
+fpr = fopfile(vfile,"r");
+
+fgets(string,256,fpr);
+sscanf(string,"%d",&vm->nlay);
+
+vm->vs = (double *) check_malloc ((vm->nlay)*sizeof(double));
+vm->invb2 = (double *) check_malloc ((vm->nlay)*sizeof(double));
+vm->th = (float *) check_malloc ((vm->nlay)*sizeof(float));
+
+for(i=0;i<vm->nlay;i++)
+   {
+   fgets(string,256,fpr);
+   sscanf(string,"%f %lf",&vm->th[i],&vm->vs[i]);
+   }
+
+fclose(fpr);
+
+i = 0;
+dep = vm->th[0];
+while(dep < (*ztop))
+   {
+   i++;
+   dep = dep + vm->th[i];
+   }
+
+zbot = *ztop + (*wid)*sin((*dip)*rperd);
+invsinA = 1.0/sin((*dip)*rperd);
+
+if(dep >= dmax)
+   rvfac = (*rvf);
+else if(dep < dmax && dep > dmin)
+   rvfac = (*rvf)*(1.0 - (1.0 - (*shal_vr))*(dmax-dep)/(dmax-dmin));
+else
+   rvfac = (*rvf)*(*shal_vr);
+
+vm->th[0] = invsinA*(dep - (*ztop));
+vm->vs[0] = rvfac*vm->vs[i];
+
+j = i;
+k = 0;
+while(dep < zbot)
+   {
+   j++; k++;
+   dep = dep + vm->th[j];
+
+   if(dep >= dmax)
+      rvfac = (*rvf);
+   else if(dep < dmax && dep > dmin)
+      rvfac = (*rvf)*(1.0 - (1.0 - (*shal_vr))*(dmax-dep)/(dmax-dmin));
+   else
+      rvfac = (*rvf)*(*shal_vr);
+
+   vm->th[k] = invsinA*vm->th[j];
+   vm->vs[k] = rvfac*vm->vs[j];
+   }
+
+vm->nlay = k + 1;
+
+for(i=0;i<vm->nlay;i++)
+   vm->invb2[i] = 1.0/(vm->vs[i]*vm->vs[i]);
+}
+
+get_rupt(vm,h,srcd,recd,srcr,recr,p,rad,tt)
+struct velmodel *vm;
+float *h, *srcr, *recr, *recd, *tt, *srcd;
+double *p, *rad;
+{
+double sth, rth, rng;
+float sdep, rdep;
+float tol;
+float tup, thead;
+int k, slay, rlay, linc;
+
+float tenth = 0.1;
+double eps = 1.0e-12;
+
+tol = tenth*(*h);
+
+rng = *srcr - *recr;
+if(rng < 0.0)
+   rng = -rng;
+
+k = 0;
+sdep = vm->th[0];
+while((*srcd) > sdep)
+   {
+   k++;
+   sdep = sdep + vm->th[k];
+   }
+slay = k;
+
+k = 0;
+rdep = vm->th[0];
+while((*recd) > rdep)
+   {
+   k++;
+   rdep = rdep + vm->th[k];
+   }
+rlay = k;
+
+sth = sdep - *srcd;
+rth = rdep - *recd;
+get_headtime(vm,slay,&sth,rlay,&rth,&rng,&thead);
+
+if(slay != rlay)
+   {
+   if(sdep > rdep)
+      {
+      sth = vm->th[slay] - (sdep - *srcd);
+      rth = rdep - *recd;
+      linc = -1;
+      }
+   else
+      {
+      sth = sdep - *srcd;
+      rth = vm->th[rlay] - (rdep - *recd);
+      linc = 1;
+      }
+
+/*
+   bisection method
+*/
+    bisect_p(vm,slay,&sth,rlay,&rth,p,&eps,&tol,&rng,linc);
+
+         /* get path length and travel time for correct ray parameter */
+
+   get_radtime(vm,slay,&sth,rlay,&rth,p,rad,&tup,linc);
+   }
+else
+   {
+   *rad = sqrt(rng*rng + ((*srcd)-(*recd))*((*srcd)-(*recd)));
+   tup = (*rad)/vm->vs[slay];
+   }
+
+*tt = thead;
+if(tup < thead)
+   *tt = tup;
+else
+   fprintf(stderr,"*** thead selected\n");
+
+/*
+fprintf(stderr,"*** thd= %f tup= %f\n",thead,tup);
+*/
+}
+
+bisect_p(vm,slay,sth,rlay,rth,p,eps,tol,rng,linc)
+struct velmodel *vm;
+double *sth, *rth, *p, *rng, *eps;
+float *tol;
+int linc, slay, rlay;
+{
+double tp0, pp, pm, p0, r0, delr;
+int i, ic;
+
+int nc = 100;
+
+p0 = 1.0/vm->vs[slay];
+for(i=slay+linc;i!=rlay;i=i+linc)
+   {
+   tp0 = 1.0/vm->vs[i];
+   if(tp0 < p0)
+      p0 = tp0;
+   }
+tp0 = 1.0/vm->vs[rlay];
+if(tp0 < p0)
+   p0 = tp0;
+
+*p = *eps;
+
+get_range(vm,slay,sth,rlay,rth,p,&r0,linc);
+
+if(r0 < *rng)  /* if not, then p=0 (vertical ray) */
+   {
+                   /* bracket range with ray parameter extremes */
+
+   ic = 0;
+   while(r0 < *rng && ic < nc)
+      {
+      ic++;
+      *p = p0*(1.0 - (*eps)/(double)(ic*ic));
+      get_range(vm,slay,sth,rlay,rth,p,&r0,linc);
+      }
+
+   pp = *p;
+   pm = *eps;
+
+   delr = r0 - *rng;
+
+/*
+   use bisection to converge to correct ray parameter
+*/
+
+   ic = 0;
+   while(delr > *tol)
+      {
+      *p = 0.5*(pp + pm);
+
+      if(*p == pp || *p == pm) /* beyond double precision accuracy */
+         break;
+
+      get_range(vm,slay,sth,rlay,rth,p,&r0,linc);
+      if(r0 >= *rng)
+         {
+         delr = r0 - *rng;
+         pp = *p;
+         }
+      else
+         {
+         delr = *rng - r0;
+         pm = *p;
+         }
+
+      ic++;
+      if(ic > nc)
+         break;
+      }
+   }
+else
+   *p = 0.0;
+}
+
+get_range(vm,slay,sth,rlay,rth,p,r0,linc)
+struct velmodel *vm;
+double *sth, *rth, *p, *r0;
+int linc, slay, rlay;
+{
+int i;
+double denom, arg;
+double invp2;
+
+invp2 = 1.0/((*p)*(*p));
+
+denom = sqrt(invp2*vm->invb2[slay] - 1.0);
+*r0 = (*sth)/denom;
+
+for(i=slay+linc;i!=rlay;i=i+linc)
+   {
+   denom = sqrt(invp2*vm->invb2[i] - 1.0);
+   *r0 = *r0 + vm->th[i]/denom;
+   }
+
+denom = sqrt(invp2*vm->invb2[rlay] - 1.0);
+*r0 = *r0 + (*rth)/denom;
+}
+
+get_radtime(vm,slay,sth,rlay,rth,p,r0,tt,linc)
+struct velmodel *vm;
+double *sth, *rth, *p, *r0;
+float *tt;
+int linc, slay, rlay;
+{
+int i;
+double r1, rad, arg;
+double denom, invp2;
+
+if(*p > 0.0)
+   {
+   arg = 1.0 - (*p)*(*p)*vm->vs[slay]*vm->vs[slay];
+   denom = sqrt(arg);
+
+   *r0 = (*sth)/denom;
+   *tt = *r0/vm->vs[slay];
+
+   for(i=slay+linc;i!=rlay;i=i+linc)
+      {
+      arg = 1.0 - (*p)*(*p)*vm->vs[i]*vm->vs[i];
+      denom = sqrt(arg);
+
+      rad = vm->th[i]/denom;
+      *r0 = *r0 + rad;
+      *tt = *tt + rad/vm->vs[i];
+      }
+
+   arg = 1.0 - (*p)*(*p)*vm->vs[rlay]*vm->vs[rlay];
+   denom = sqrt(arg);
+
+   rad = (*rth)/denom;
+   *r0 = *r0 + rad;
+   *tt = *tt + rad/vm->vs[rlay];
+   }
+else
+   {
+   *r0 = *sth;
+   *tt = *r0/vm->vs[slay];
+
+   for(i=slay+linc;i!=rlay;i=i+linc)
+      {
+      *r0 = *r0 + vm->th[i];
+      *tt = *tt + vm->th[i]/vm->vs[i];
+      }
+
+   *r0 = *r0 + *rth;
+   *tt = *tt + (*rth)/vm->vs[rlay];
+   }
+}
+
+get_headtime(mod,slay,sth,rlay,rth,rad,tt)
+struct velmodel *mod;
+double *sth, *rth, *rad;
+float *tt;
+int slay, rlay;
+{
+int vflag, j, jj, jst, jnd;
+double inv2, rc, tinc, arg;
+
+jst = rlay;
+if(slay > rlay)
+   jst = slay;
+
+*tt = 1.0e+5;
+for(jnd=jst+1;jnd<mod->nlay;jnd++)
+   {
+   jj = rlay;
+   if(slay < rlay)
+      jj = slay;
+
+   vflag = 1;
+   for(j=jj;j<jnd;j++)
+      {
+      if(mod->vs[j] > mod->vs[jnd])
+	 vflag = -1;
+      }
+
+   if(vflag == 1)
+      {
+      tinc = (*rad)/mod->vs[jnd];
+      inv2 = 1.0/(mod->vs[jnd]*mod->vs[jnd]);
+
+      arg = 1.0/(mod->vs[slay]*mod->vs[slay]) - inv2;
+      arg = sqrt(arg);
+      tinc = tinc + (*sth)*arg;
+      rc = (*sth)/(arg*mod->vs[jnd]);
+
+      for(j=slay+1;j<jnd;j++)
+         {
+         arg = 1.0/(mod->vs[j]*mod->vs[j]) - inv2;
+         arg = sqrt(arg);
+         tinc = tinc + mod->th[j]*arg;
+         rc = rc + mod->th[j]/(arg*mod->vs[jnd]);
+         }
+
+      for(j=rlay+1;j<jnd;j++)
+         {
+         arg = 1.0/(mod->vs[j]*mod->vs[j]) - inv2;
+         arg = sqrt(arg);
+         tinc = tinc + mod->th[j]*arg;
+         rc = rc + mod->th[j]/(arg*mod->vs[jnd]);
+         }
+
+      arg = 1.0/(mod->vs[rlay]*mod->vs[rlay]) - inv2;
+      arg = sqrt(arg);
+      tinc = tinc + (*rth)*arg;
+      rc = rc + (*rth)/(arg*mod->vs[jnd]);
+
+      if(tinc < *tt && rc < (*rad))
+         *tt = tinc;
+      }
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/greenfunc.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/greenfunc.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/greenfunc.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,970 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+void get_gfpars(struct gfparam *gfp)
+{
+FILE *fpr, *fopfile();
+float rng, z0;
+int i, j, error;
+
+if(gfp->flag3d == 0)
+   {
+   fpr = fopfile(gfp->gflocs,"r");
+
+   error = fscanf(fpr,"%d",&gfp->ngfr);
+   if (error!=1) {
+	 fprintf(stderr, "Error reading from file %s.\n", gfp->gflocs);
+	 exit(-3);
+   }
+   gfp->gfr = (float *) check_malloc (gfp->ngfr*sizeof(float));
+   for(i=0;i<gfp->ngfr;i++) {
+      error = fscanf(fpr,"%f",&gfp->gfr[i]);
+	  if (error!=1) {
+		fprintf(stderr, "Error reading from file %s.\n", gfp->gflocs);
+		exit(-3);
+	  }
+   }
+
+   error = fscanf(fpr,"%d",&gfp->ngfd);
+   if (error!=1) {
+	 fprintf(stderr, "Error reading from file %s.\n", gfp->gflocs);
+	 exit(-3);
+   }
+   gfp->gfd = (float *) check_malloc (gfp->ngfd*sizeof(float));
+   for(i=0;i<gfp->ngfd;i++) {
+      error = fscanf(fpr,"%f",&gfp->gfd[i]);
+	  if (error!=1) {
+		fprintf(stderr, "Error reading from file %s.\n", gfp->gflocs);
+		exit(-3);
+	  }
+   }
+
+   fclose(fpr);
+
+   fpr = fopfile(gfp->gftimes,"r");
+
+   gfp->gft = (float *) check_malloc (gfp->ngfd*gfp->ngfr*sizeof(float));
+   for(j=0;j<gfp->ngfd;j++) {
+      for(i=0;i<gfp->ngfr;i++) {
+		fscanf(fpr,"%*f %*f %*f");
+		error = fscanf(fpr,"%f %f %f",&z0,&rng,&gfp->gft[i+j*(gfp->ngfr)]);
+		if (error!=3) {
+		  fprintf(stderr, "Error reading from file %s.\n", gfp->gftimes);
+		  exit(-3);
+		}
+		if(gfp->gfr[i] < rng*(1.0-0.01) || gfp->gfr[i] > rng*(1.0+0.01) ||
+		   gfp->gfd[j] < z0*(1.0-0.01) || gfp->gfd[j] > z0*(1.0+0.01)) {
+            fprintf(stderr,"*** mismatch between gflocs and gftimes, exiting...\n");
+            fprintf(stderr,"*** i= %d j= %d\n",i,j);
+            exit(-1);
+		}
+	  }
+   }
+   
+   fclose(fpr);
+   }
+else
+   {
+   fpr = fopfile(gfp->gflocs,"r");
+
+   error = fscanf(fpr,"%d",&gfp->ngfr);
+   if (error!=1) {
+	 fprintf(stderr, "Error reading from file %s.\n", gfp->gflocs);
+	 exit(-3);
+   }
+   gfp->gfn = (float *) check_malloc (gfp->ngfr*sizeof(float));
+   gfp->gfe = (float *) check_malloc (gfp->ngfr*sizeof(float));
+   gfp->gfr = (float *) check_malloc (gfp->ngfr*sizeof(float));
+   for(i=0;i<gfp->ngfr;i++) {
+      error = fscanf(fpr,"%f %f %f",&gfp->gfn[i],&gfp->gfe[i],&gfp->gfr[i]);
+	  if (error!=3) {
+		fprintf(stderr, "Error reading from file %s.\n", gfp->gflocs);
+		exit(-3);
+	  } 
+   }
+
+   error = fscanf(fpr,"%d",&gfp->ngfd);
+   if (error!=1) {
+	 fprintf(stderr, "Error reading from file %s.\n", gfp->gflocs);
+	 exit(-3);
+   }   
+
+   gfp->gfd = (float *) check_malloc (gfp->ngfd*sizeof(float));
+   for(i=0;i<gfp->ngfd;i++) {
+	 error = fscanf(fpr,"%f",&gfp->gfd[i]);
+	 if (error!=1) {
+	   fprintf(stderr, "Error reading from file %s.\n", gfp->gflocs);
+	   exit(-3);
+	 } 
+   }
+   fclose(fpr);
+   }
+}
+
+void find_4gf(struct gfparam gfp,struct gfheader *gfh,float *rng,float *dep,float *se,float *sn)
+{
+int i, ir, ir0, ir1, id0, id1;
+float sum, rr0, rr1, dd0, dd1;
+float dr, dr0, dr1, drng;
+
+if(gfp.flag3d == 0)
+   {
+   ir1 = 0;
+   while(gfp.gfr[ir1] < *rng && ir1 < (gfp.ngfr)-1)
+      ir1++;
+
+   ir0 = ir1 - 1;
+
+   if(ir1 == 0)
+      {
+      ir0 = ir1;
+      fprintf(stderr,"*** range= %f < gf range limits\n",*rng);
+      }
+
+   if(ir1 == (gfp.ngfr)-1 && gfp.gfr[ir1] < *rng)
+      {
+      ir0 = ir1;
+      fprintf(stderr,"*** range= %f > gf range limits\n",*rng);
+      }
+
+   rr0 = gfp.gfr[ir0] - *rng;
+   rr1 = gfp.gfr[ir1] - *rng;
+   rr0 = rr0*rr0;
+   rr1 = rr1*rr1;
+   }
+else
+   {
+   ir0 = -1;
+   dr0 = 1.0e+10;
+   ir1 = -1;
+   dr1 = 1.0e+10;
+   for(ir=0;ir<gfp.ngfr;ir++)
+      {
+      drng = (*rng) - gfp.gfr[ir];
+
+      if(drng < 0.0 && -drng <= gfp.rtol)
+         {
+	 dr = (gfp.gfn[ir]-(*sn))*(gfp.gfn[ir]-(*sn))
+	       + (gfp.gfe[ir]-(*se))*(gfp.gfe[ir]-(*se));
+
+	 if(dr < dr0)
+	    {
+	    dr0 = dr;
+	    ir0 = ir;
+	    }
+	 }
+      if(drng >= 0.0 && drng <= gfp.rtol)
+         {
+	 dr = (gfp.gfn[ir]-(*sn))*(gfp.gfn[ir]-(*sn))
+	       + (gfp.gfe[ir]-(*se))*(gfp.gfe[ir]-(*se));
+
+	 if(dr < dr1)
+	    {
+	    dr1 = dr;
+	    ir1 = ir;
+	    }
+	 }
+      }
+
+   if(ir0 == -1)
+      ir0 = ir1;
+   if(ir1 == -1)
+      ir1 = ir0;
+
+   rr0 = (gfp.gfn[ir0]-(*sn))*(gfp.gfn[ir0]-(*sn))
+          + (gfp.gfe[ir0]-(*se))*(gfp.gfe[ir0]-(*se));
+   rr1 = (gfp.gfn[ir1]-(*sn))*(gfp.gfn[ir1]-(*sn))
+          + (gfp.gfe[ir1]-(*se))*(gfp.gfe[ir1]-(*se));
+   }
+
+id1 = 0;
+while(gfp.gfd[id1] < *dep && id1 < (gfp.ngfd)-1)
+   id1++;
+
+id0 = id1 - 1;
+
+if(id1 == 0)
+   id0 = id1;
+
+if(id1 == (gfp.ngfd)-1 && gfp.gfd[id1] < *dep)
+   id0 = id1;
+
+dd0 = gfp.gfd[id0] - *dep;
+dd1 = gfp.gfd[id1] - *dep;
+dd0 = dd0*dd0;
+dd1 = dd1*dd1;
+
+gfh[0].read_flag = 0;
+if(gfh[0].id == id0 && gfh[0].ir == ir0) /* already read-in */
+   gfh[0].read_flag = 1;
+
+gfh[1].read_flag = 0;
+if(gfh[1].id == id0 && gfh[1].ir == ir1) /* already read-in */
+   gfh[1].read_flag = 1;
+
+gfh[2].read_flag = 0;
+if(gfh[2].id == id1 && gfh[2].ir == ir0) /* already read-in */
+   gfh[2].read_flag = 1;
+
+gfh[3].read_flag = 0;
+if(gfh[3].id == id1 && gfh[3].ir == ir1) /* already read-in */
+   gfh[3].read_flag = 1;
+
+/* even if read_flag=1 still set wt's since dists. may be slightly different */
+   
+gfh[0].id = id0; gfh[0].ir = ir0; gfh[0].wt = sqrt(dd0 + rr0);
+gfh[1].id = id0; gfh[1].ir = ir1; gfh[1].wt = sqrt(dd0 + rr1);
+gfh[2].id = id1; gfh[2].ir = ir0; gfh[2].wt = sqrt(dd1 + rr0);
+gfh[3].id = id1; gfh[3].ir = ir1; gfh[3].wt = sqrt(dd1 + rr1);
+
+if(gfh[0].wt == 0.0)
+   { gfh[0].wt = 1.0; gfh[1].wt = 0.0; gfh[2].wt = 0.0; gfh[3].wt = 0.0; }
+else if(gfh[1].wt == 0.0)
+   { gfh[0].wt = 0.0; gfh[1].wt = 1.0; gfh[2].wt = 0.0; gfh[3].wt = 0.0; }
+else if(gfh[2].wt == 0.0)
+   { gfh[0].wt = 0.0; gfh[1].wt = 0.0; gfh[2].wt = 1.0; gfh[3].wt = 0.0; }
+else if(gfh[3].wt == 0.0)
+   { gfh[0].wt = 0.0; gfh[1].wt = 0.0; gfh[2].wt = 0.0; gfh[3].wt = 1.0; }
+else
+   {
+   sum = 1.0/gfh[0].wt + 1.0/gfh[1].wt + 1.0/gfh[2].wt + 1.0/gfh[3].wt;
+   sum = 1.0/sum;
+   for(i=0;i<4;i++)
+      gfh[i].wt = sum/gfh[i].wt;
+   }
+}
+
+void read_4gf(char *gfpath,char *gfname,float *gf,int nts,struct gfheader *gfh,struct gfparam gfpar,float *maxgft,int *maxnt,float *dtout,float *space)
+{
+float *gfptr, fnt, pbar;
+int kg, ig, resamp, ntpad, ntrsmp;
+int gnt;
+
+float tol = 1.0e-02;
+
+float pratio_tol, mratio_tol;
+float ratio_tol = 0.00001;
+
+pratio_tol = 1.0 + ratio_tol;
+mratio_tol = 1.0 - ratio_tol;
+
+*maxgft = -1.0e+15;
+*maxnt = -1;
+
+for(kg=0;kg<4;kg++)
+   {
+   if(gfh[kg].read_flag == 1)
+      fprintf(stderr,"*** already read-in\n");
+
+   else      /* new location, need to read-in GF */
+      {
+      gfptr = gf + gfpar.nc*kg*nts;
+      zapit(gfptr,gfpar.nc*nts);
+
+      read_gf(gfpath,gfname,gfptr,nts,&gfh[kg],gfpar);
+      }
+
+   if(gfpar.flag3d == 0 && gfh[kg].gft > *maxgft)
+      *maxgft = gfh[kg].gft;
+
+   /* resample if needed */
+   if((*dtout)/gfh[kg].dt > pratio_tol || (*dtout)/gfh[kg].dt < mratio_tol)
+      {
+      fprintf(stderr,"*** RESAMPLED diff= %13.5e ratio= %13.5e\n",(*dtout)-gfh[kg].dt,(*dtout)/gfh[kg].dt);
+
+      ntpad = 2*gfh[kg].nt;
+      fnt = ntpad*gfh[kg].dt/(*dtout);
+      gnt = (int)(fnt + 0.5);
+
+      while(nt_tol(fnt,gnt) > tol)
+         {
+         ntpad++;
+         fnt = ntpad*gfh[kg].dt/(*dtout);
+         gnt = (int)(fnt + 0.5);
+         }
+
+/*
+      while(modff(fnt,&fnt) != (float)(0.0))
+         {
+         ntpad++;
+         fnt = ntpad*gfh[kg].dt/(*dtout);
+         }
+*/
+
+      ntrsmp = (int)(fnt);
+      if(ntrsmp > nts)
+         {
+         fprintf(stderr,"*** resampled nt > ntsum, exiting...\n");
+         exit(-1);
+         }
+
+      if((*dtout) < gfh[kg].dt)
+         resamp = 1;
+      else
+         resamp = -1;
+
+      for(ig=0;ig<gfpar.nc;ig++)
+	 {
+	 gfptr = gf + (ig + gfpar.nc*kg)*nts;
+         resample(gfptr,gfh[kg].nt,&gfh[kg].dt,resamp,ntpad,ntrsmp,dtout,space);
+	 }
+
+      gfh[kg].nt = ntrsmp;
+      gfh[kg].dt = (*dtout);
+      }
+
+   if(gfh[kg].nt > *maxnt)
+      *maxnt = gfh[kg].nt;
+   }
+
+if(gfpar.flag3d == 1)  /* adjust stime arrivals using average Vs near GF locations */
+   {
+   pbar = 0.0;
+   for(kg=0;kg<4;kg++)
+      pbar = pbar + sqrt(gfh[kg].rho/gfh[kg].mu);  /* slowness */
+   pbar = 0.25*pbar;
+
+   for(kg=0;kg<4;kg++)
+      {
+      gfh[kg].gft = pbar*sqrt(gfh[kg].rng*gfh[kg].rng + gfh[kg].dep*gfh[kg].dep);
+      if(gfh[kg].gft > *maxgft)
+         *maxgft = gfh[kg].gft;
+      }
+   }
+}
+
+void read_gf(char *gfpath,char *gfname,float *gf,int nts,struct gfheader *gfh,struct gfparam gfpar)
+{
+float *gfp;
+int fdr, it, ig, swap_flag;
+char ndx[16], edx[16], ddx[16], str[256];
+
+if(gfpar.flag3d == 0)
+   {
+   sprintf(str,"%s/%s%.4d%.4d",gfpath,gfname,(1 + gfh->id),(1 + gfh->ir));
+
+   fdr = opfile_ro(str);
+
+   reed(fdr,&gfh->nt,sizeof(int));
+   reed(fdr,&gfh->dt,sizeof(float));
+   reed(fdr,&gfh->dep,sizeof(float));
+   reed(fdr,&gfh->rng,sizeof(float));
+   reed(fdr,&gfh->tst,sizeof(float));
+   reed(fdr,&gfh->mom,sizeof(float));
+   reed(fdr,&gfh->mu,sizeof(float));
+
+   if(gfpar.swap_flag == 0)  /* byte-order is OK, no swapping needed */
+      swap_flag = 0;
+   else                        /* byte-order not OK, swapping needed */
+      {
+      swap_in_place(1,(char *)(&gfh->nt));
+      swap_in_place(1,(char *)(&gfh->dt));
+      swap_in_place(1,(char *)(&gfh->dep));
+      swap_in_place(1,(char *)(&gfh->rng));
+      swap_in_place(1,(char *)(&gfh->tst));
+      swap_in_place(1,(char *)(&gfh->mom));
+      swap_in_place(1,(char *)(&gfh->mu));
+
+      swap_flag = 1;
+      }
+
+   gfh->gft = gfpar.gft[gfh->ir + (gfh->id)*(gfpar.ngfr)];
+
+   for(ig=0;ig<gfpar.nc;ig++)
+      {
+      gfp = gf + ig*nts;
+      reed(fdr,gfp,gfh->nt*sizeof(float));
+
+      if(swap_flag == 1)
+         swap_in_place(gfh->nt,(char *)(gfp));
+      }
+   }
+else
+   {
+   if(gfpar.gfn[gfh->ir] < 0.0)
+      sprintf(ndx,"-%.6d",(int)(-1000.0*gfpar.gfn[gfh->ir] + 0.5));
+   else
+      sprintf(ndx,"+%.6d",(int)(1000.0*gfpar.gfn[gfh->ir] + 0.5));
+
+   if(gfpar.gfe[gfh->ir] < 0.0)
+      sprintf(edx,"-%.6d",(int)(-1000.0*gfpar.gfe[gfh->ir] + 0.5));
+   else
+      sprintf(edx,"+%.6d",(int)(1000.0*gfpar.gfe[gfh->ir] + 0.5));
+
+   sprintf(ddx,"%.5d",(int)(1000.0*gfpar.gfd[gfh->id] + 0.5));
+
+   if(gfpar.use_depdir == 1)
+      sprintf(str,"%s/D%s/%s_n%se%sd%s.sgt",gfpath,ddx,gfname,ndx,edx,ddx);
+   else
+      sprintf(str,"%s/%s_n%se%sd%s.sgt",gfpath,gfname,ndx,edx,ddx);
+
+   fprintf(stderr,"GF= %s\n",str);
+
+   fdr = opfile_ro(str);
+
+   reed(fdr,&swap_flag,sizeof(int));
+   reed(fdr,&gfh->olon,sizeof(float));
+   reed(fdr,&gfh->olat,sizeof(float));
+   reed(fdr,&gfh->slon,sizeof(float));
+   reed(fdr,&gfh->slat,sizeof(float));
+   reed(fdr,&gfh->north,sizeof(float));
+   reed(fdr,&gfh->east,sizeof(float));
+   reed(fdr,&gfh->dep,sizeof(float));
+   reed(fdr,&gfh->xazim,sizeof(float));
+   reed(fdr,&gfh->lam,sizeof(float));
+   reed(fdr,&gfh->mu,sizeof(float));
+   reed(fdr,&gfh->rho,sizeof(float));
+   reed(fdr,&gfh->gft,sizeof(float));
+   reed(fdr,&gfh->xmom,sizeof(float));
+   reed(fdr,&gfh->ymom,sizeof(float));
+   reed(fdr,&gfh->zmom,sizeof(float));
+   reed(fdr,&gfh->tst,sizeof(float));
+   reed(fdr,&gfh->nt,sizeof(int));
+   reed(fdr,&gfh->dt,sizeof(float));
+
+   if(swap_flag == SWAP_FLAG)  /* byte-order is OK, no swapping needed */
+      swap_flag = 0;
+   else                        /* byte-order not OK, swapping needed */
+      {
+      swap_in_place(1,(char *)(&swap_flag));
+      swap_in_place(1,(char *)(&gfh->olon));
+      swap_in_place(1,(char *)(&gfh->olat));
+      swap_in_place(1,(char *)(&gfh->slon));
+      swap_in_place(1,(char *)(&gfh->slat));
+      swap_in_place(1,(char *)(&gfh->north));
+      swap_in_place(1,(char *)(&gfh->east));
+      swap_in_place(1,(char *)(&gfh->dep));
+      swap_in_place(1,(char *)(&gfh->xazim));
+      swap_in_place(1,(char *)(&gfh->lam));
+      swap_in_place(1,(char *)(&gfh->mu));
+      swap_in_place(1,(char *)(&gfh->rho));
+      swap_in_place(1,(char *)(&gfh->gft));
+      swap_in_place(1,(char *)(&gfh->xmom));
+      swap_in_place(1,(char *)(&gfh->ymom));
+      swap_in_place(1,(char *)(&gfh->zmom));
+      swap_in_place(1,(char *)(&gfh->tst));
+      swap_in_place(1,(char *)(&gfh->nt));
+      swap_in_place(1,(char *)(&gfh->dt));
+
+      if(swap_flag != SWAP_FLAG)  /* byte-order still not OK */
+         {
+	 fprintf(stderr,"Problem with swap_flag= %d, exiting...\n",swap_flag);
+	 exit(-1);
+         }
+      else
+         swap_flag = 1;
+      }
+
+   gfh->rng = sqrt((gfh->north)*(gfh->north) + (gfh->east)*(gfh->east));
+
+fprintf(stderr,"xm= %13.5e ymom= %13.5e zmom= %13.5e\n",gfh->xmom,gfh->ymom,gfh->zmom);
+   if(gfh->xmom >= 0.0)
+      {
+      for(ig=0;ig<6;ig++)
+         {
+         gfp = gf + ig*nts;
+         reed(fdr,gfp,gfh->nt*sizeof(float));
+
+         if(swap_flag == 1)
+            swap_in_place(gfh->nt,(char *)(gfp));
+         }
+      }
+
+   if(gfh->ymom >= 0.0)
+      {
+      for(ig=6;ig<12;ig++)
+         {
+         gfp = gf + ig*nts;
+         reed(fdr,gfp,gfh->nt*sizeof(float));
+
+         if(swap_flag == 1)
+            swap_in_place(gfh->nt,(char *)(gfp));
+         }
+      }
+
+   if(gfh->zmom >= 0.0)
+      {
+      for(ig=12;ig<18;ig++)
+         {
+         gfp = gf + ig*nts;
+         reed(fdr,gfp,gfh->nt*sizeof(float));
+
+         if(swap_flag == 1)
+            swap_in_place(gfh->nt,(char *)(gfp));
+         }
+      }
+   }
+
+close(fdr);
+}
+
+void sum_4gf(float *seis,int ntout,float *gf,struct gfheader *gfh,int ntsum,int maxnt,float *rupt,float *maxgft,float *tstart,int tdflag,struct mechparam mp)
+{
+int ig, it, im;
+float backt0, t0[4];
+float *sptr, *gfptr;
+
+backt0 = 0.0;
+for(ig=0;ig<4;ig++)
+   {
+   t0[ig] = *maxgft - gfh[ig].gft;
+   backt0 = backt0 - t0[ig]*gfh[ig].wt;
+   t0[ig] = t0[ig] + gfh[ig].tst;
+   }
+backt0 = backt0 + *rupt - *tstart;
+
+for(im=0;im<mp.nmech;im++)
+   {
+   sptr = seis + 3*im*ntout;
+   gfptr = gf + 12*im*ntsum;
+   timeshift_gf(sptr,ntout,gfptr,gfh,ntsum,t0,&backt0,tdflag);
+   }
+}
+
+void timeshift_gf(float *seis,int ntout,float *gf,struct gfheader *gfh,int ntsum,float *t0,float *bt0,int tdf)
+{
+struct complex *gc0, *gc1, *gc2;
+float *gf0, *gf1, *gf2, *sv, *sn, *se, *gfv, *gfn, *gfe;
+float cosA, sinA, arg, fac, norm, tmpre, scale, tsh;
+int i, ig, tapst, it, nts3, nts6, nts9;
+int itshift, it0, maxnt, ntp2, nf2;
+
+int taplen = 10;
+float zap = 0.0;
+float half = 0.5;
+float one = 1.0;
+float two = 2.0;
+float pi = 3.141592654;
+
+maxnt = 0;
+
+sv = seis;
+sn = seis + ntout;
+se = seis + 2*ntout;
+
+if(tdf)
+   {
+   for(ig=0;ig<4;ig++)
+      {
+      gf0 = gf + 3*ig*ntsum;
+      gf1 = gf + 3*ig*ntsum + ntsum;
+      gf2 = gf + 3*ig*ntsum + 2*ntsum;
+
+   /* taper */
+
+      tapst = gfh[ig].nt - taplen;
+      arg = pi/(float)(taplen);
+      for(it=tapst+1;it<gfh[ig].nt;it++)
+         {
+         fac = half*(one + cos(arg*(it-tapst)));
+   
+         gf0[it] = fac*gf0[it];
+         gf1[it] = fac*gf1[it];
+         gf2[it] = fac*gf2[it];
+         }
+
+/* apply time shift */
+
+      tsh = t0[ig] + *bt0;
+      if(tsh >= 0.0)
+         itshift = (int)(tsh/gfh[ig].dt + 0.5);
+      else
+         itshift = (int)(tsh/gfh[ig].dt - 0.5);
+
+      it0 = gfh[ig].nt + itshift;
+
+      if(it0 > ntsum)
+         it0 = ntsum;
+
+      if(it0 > ntout)
+         it0 = ntout;
+
+      if(itshift < 0)
+         {
+         for(i=0;i<it0;i++)
+            {
+	    sv[i] = sv[i] + gf0[i-itshift];
+	    sn[i] = sn[i] + gf1[i-itshift];
+	    se[i] = se[i] + gf2[i-itshift];
+	    }
+         }
+      else
+         {
+         for(i=it0-1;i>=itshift;i--)
+            {
+	    sv[i] = sv[i] + gf0[i-itshift];
+	    sn[i] = sn[i] + gf1[i-itshift];
+	    se[i] = se[i] + gf2[i-itshift];
+	    }
+         }
+
+      if(it0 > maxnt)
+         maxnt = it0;
+      }
+   }
+else
+   {
+   ntp2 = 2;
+   while(ntp2 < ntsum)
+      ntp2 = ntp2*2;
+
+   nf2 = ntp2/2;
+
+   for(ig=0;ig<4;ig++)
+      {
+      gf0 = gf + 3*ig*ntsum;
+      gf1 = gf + 3*ig*ntsum + ntsum;
+      gf2 = gf + 3*ig*ntsum + 2*ntsum;
+
+      /* taper and pad */
+
+      tapst = gfh[ig].nt - taplen;
+      arg = pi/(float)(taplen);
+      for(it=tapst+1;it<gfh[ig].nt;it++)
+         {
+         fac = half*(one + cos(arg*(it-tapst)));
+   
+         gf0[it] = fac*gf0[it];
+         gf1[it] = fac*gf1[it];
+         gf2[it] = fac*gf2[it];
+         }
+   
+      for(it=gfh[ig].nt;it<ntp2;it++)
+         {
+         gf0[it] = zap;
+         gf1[it] = zap;
+         gf2[it] = zap;
+         }
+   
+   /* apply time shift */
+   
+      gc0 = (struct complex *) gf0;
+      gc1 = (struct complex *) gf1;
+      gc2 = (struct complex *) gf2;
+   
+      forfft(gc0,ntp2,-1);
+      forfft(gc1,ntp2,-1);
+      forfft(gc2,ntp2,-1);
+   
+      /* zero nyquist */
+      gc0[0].im = zap;
+      gc1[0].im = zap;
+      gc2[0].im = zap;
+   
+      fac = -(t0[ig] + *bt0)*two*pi/(ntp2*gfh[ig].dt);
+      for(i=1;i<nf2;i++)
+         {
+         arg = fac*i;
+         cosA = cos(arg);
+         sinA = sin(arg);
+   
+         tmpre     = gc0[i].re*cosA - gc0[i].im*sinA;
+         gc0[i].im = gc0[i].re*sinA + gc0[i].im*cosA;
+         gc0[i].re = tmpre;
+   
+         tmpre     = gc1[i].re*cosA - gc1[i].im*sinA;
+         gc1[i].im = gc1[i].re*sinA + gc1[i].im*cosA;
+         gc1[i].re = tmpre;
+   
+         tmpre     = gc2[i].re*cosA - gc2[i].im*sinA;
+         gc2[i].im = gc2[i].re*sinA + gc2[i].im*cosA;
+         gc2[i].re = tmpre;
+         }
+      }
+   
+   /* reset pointers to first group of 8 GFs */
+   
+   gf0 = gf;
+   gf1 = gf + ntsum;
+   gf2 = gf + 2*ntsum;
+   
+   gc0 = (struct complex *) gf0;
+   gc1 = (struct complex *) gf1;
+   gc2 = (struct complex *) gf2;
+   
+   /* sum over 4 GFs to interpolated response */
+   
+   nts3 = 3*nf2;
+   nts6 = 6*nf2;
+   nts9 = 9*nf2;
+   for(i=0;i<nf2;i++)
+      {
+      gc0[i].re = gc0[i].re + gc0[i+nts3].re + gc0[i+nts6].re + gc0[i+nts9].re;
+      gc0[i].im = gc0[i].im + gc0[i+nts3].im + gc0[i+nts6].im + gc0[i+nts9].im;
+   
+      gc1[i].re = gc1[i].re + gc1[i+nts3].re + gc1[i+nts6].re + gc1[i+nts9].re;
+      gc1[i].im = gc1[i].im + gc1[i+nts3].im + gc1[i+nts6].im + gc1[i+nts9].im;
+   
+      gc2[i].re = gc2[i].re + gc2[i+nts3].re + gc2[i+nts6].re + gc2[i+nts9].re;
+      gc2[i].im = gc2[i].im + gc2[i+nts3].im + gc2[i+nts6].im + gc2[i+nts9].im;
+      }
+
+   invfft(gc0,ntp2,1);
+   invfft(gc1,ntp2,1);
+   invfft(gc2,ntp2,1);
+
+   maxnt = ntout;
+   if(ntp2 < maxnt)
+      maxnt = ntp2;
+
+   gfv = gf;
+   gfn = gf + ntsum;
+   gfe = gf + 2*ntsum;
+
+   scale = one/(float)(ntp2);
+   for(it=0;it<maxnt;it++)
+      {
+      sv[it] = sv[it] + scale*gfv[it];
+      sn[it] = sn[it] + scale*gfn[it];
+      se[it] = se[it] + scale*gfe[it];
+      }
+   }
+}
+
+void mech_4gf(float *gfmech,float *gf,struct gfheader *gfh,struct gfparam gfp,int nts,struct mechparam mp,float *azi,float *scl)
+{
+float *zdd, *rdd, *zds, *rds, *tds, *zss, *rss, *tss;
+float *axx, *ayy, *azz, *axy, *axz, *ayz;
+float *bxx, *byy, *bzz, *bxy, *bxz, *byz;
+float *cxx, *cyy, *czz, *cxy, *cxz, *cyz;
+float *gfn, *gfe, *gfv, *gfmptr;
+float f1, f2, f3, f4, f5;
+float cxS, sxS, cxD, sxD, cx2D, sx2D, cxL, sxL;
+float cxT, sxT, cx2T, sx2T;
+float arg, cosA, sinA, rad, tan, scale;
+float xamp, yamp, zamp, sx, sy, sz;
+float mxx, myy, mzz, mxy, mxz, myz;
+float sum, rake;
+float u1, u2, u3, vx, vy, vz, l2m;
+float us, ud, ux, uy, uz;
+int it, ig, im;
+
+float half = 0.5;
+float two = 2.0;
+float rperd = 0.017453293;
+
+arg = (mp.dip)*rperd;
+cxD = cos(arg);
+sxD = sin(arg);
+
+cx2D = cxD*cxD - sxD*sxD;
+sx2D = two*sxD*cxD;
+
+for(im=0;im<mp.nmech;im++)
+   {
+   u1 = u2 = u3 = 0;
+   if(mp.flag[im] == U1FLAG)
+      u1 = 1;
+   else if(mp.flag[im] == U2FLAG)
+      u2 = 1;
+   else if(mp.flag[im] == U3FLAG)
+      u3 = 1;
+
+   gfmptr = gfmech + im*12*nts;
+   zapit(gfmptr,12*nts);
+
+   if(gfp.flag3d == 0)
+      {
+      arg = *azi - (mp.stk)*rperd;
+      cxT = cos(arg);
+      sxT = sin(arg);
+
+      cx2T = cxT*cxT - sxT*sxT;
+      sx2T = two*sxT*cxT;
+
+      if(u1)
+         rake = mp.rak;
+      else if(u2)
+         rake = mp.rak + 90.0;
+
+      arg = rake*rperd;
+      cxL = cos(arg);
+      sxL = sin(arg);
+
+      cosA = cos(*azi);
+      sinA = sin(*azi);
+
+      sum = 0.0;
+      for(ig=0;ig<4;ig++)
+         {
+         gfv = gfmptr + 3*ig*nts;
+         gfn = gfmptr + 3*ig*nts + nts;
+         gfe = gfmptr + 3*ig*nts + 2*nts;
+
+         zdd = gf + gfp.nc*ig*nts;
+         rdd = gf + gfp.nc*ig*nts + nts;
+         zds = gf + gfp.nc*ig*nts + 2*nts;
+         rds = gf + gfp.nc*ig*nts + 3*nts;
+         tds = gf + gfp.nc*ig*nts + 4*nts;
+         zss = gf + gfp.nc*ig*nts + 5*nts;
+         rss = gf + gfp.nc*ig*nts + 6*nts;
+         tss = gf + gfp.nc*ig*nts + 7*nts;
+
+         sum = sum + (*scl)*(gfh[ig].mu)*(gfh[ig].wt);
+         scale = (*scl)*(gfh[ig].mu)*(gfh[ig].wt)/(gfh[ig].mom);
+
+         f1 = half*scale*sxL*sx2D;
+         f2 = -scale*(sxT*sxL*cx2D - cxT*cxL*cxD);
+         f3 = -scale*(sx2T*cxL*sxD + half*cx2T*sxL*sx2D);
+         f4 = scale*(cxT*sxL*cx2D + sxT*cxL*cxD);
+         f5 = scale*(cx2T*cxL*sxD - half*sx2T*sxL*sx2D);
+
+         for(it=0;it<gfh[ig].nt;it++)
+            {
+            gfv[it] = f1*zdd[it] + f2*zds[it] + f3*zss[it];
+
+            rad = f1*rdd[it] + f2*rds[it] + f3*rss[it];
+            tan = f4*tds[it] + f5*tss[it];
+
+            gfn[it] = -tan*sinA + rad*cosA;
+            gfe[it] = tan*cosA + rad*sinA;
+            }
+         }
+      }
+   else
+      {
+      arg = (mp.rak)*rperd;
+      cxL = cos(arg);
+      sxL = sin(arg);
+
+      sum = 0.0;
+      for(ig=0;ig<4;ig++)
+         {
+         arg = (mp.stk - gfh[ig].xazim)*rperd;
+         cxT = cos(arg);
+         sxT = sin(arg);
+/*
+         cx2T = cxT*cxT - sxT*sxT;
+         sx2T = two*sxT*cxT;
+
+         mxx = -(sxD*cxL*sx2T + sx2D*sxL*sxT*sxT);
+         myy = (sxD*cxL*sx2T - sx2D*sxL*cxT*cxT);
+         mzz = sx2D*sxL;
+         mxy = (sxD*cxL*cx2T + half*sx2D*sxL*sx2T);
+         mxz = -(cxD*cxL*cxT + cx2D*sxL*sxT);
+         myz = -(cxD*cxL*sxT - cx2D*sxL*cxT);
+*/
+
+         vx = -sxD*sxT;
+         vy =  sxD*cxT;
+         vz = -cxD;
+
+         us = u1*cxL - u2*sxL;
+         ud = u1*sxL + u2*cxL;
+
+         ux = -(u3*sxD - ud*cxD)*sxT + us*cxT;
+         uy =  (u3*sxD - ud*cxD)*cxT + us*sxT;
+         uz = -(u3*cxD + ud*sxD);
+
+	 l2m = gfh[ig].lam + two*gfh[ig].mu;
+
+         mxx = l2m*vx*ux + (gfh[ig].lam)*vy*uy + (gfh[ig].lam)*vz*uz;
+         myy = (gfh[ig].lam)*vx*ux + l2m*vy*uy + (gfh[ig].lam)*vz*uz;
+         mzz = (gfh[ig].lam)*vx*ux + (gfh[ig].lam)*vy*uy + l2m*vz*uz;
+         mxy = (gfh[ig].mu)*(vx*uy + vy*ux);
+         mxz = (gfh[ig].mu)*(vx*uz + vz*ux);
+         myz = (gfh[ig].mu)*(vy*uz + vz*uy);
+
+         arg = gfh[ig].xazim*rperd;
+         cosA = cos(arg);
+         sinA = sin(arg);
+
+         gfv = gfmptr + 3*ig*nts;
+         gfn = gfmptr + 3*ig*nts + nts;
+         gfe = gfmptr + 3*ig*nts + 2*nts;
+
+         axx = gf + gfp.nc*ig*nts;
+         ayy = gf + gfp.nc*ig*nts + nts;
+         azz = gf + gfp.nc*ig*nts + 2*nts;
+         axy = gf + gfp.nc*ig*nts + 3*nts;
+         axz = gf + gfp.nc*ig*nts + 4*nts;
+         ayz = gf + gfp.nc*ig*nts + 5*nts;
+         bxx = gf + gfp.nc*ig*nts + 6*nts;
+         byy = gf + gfp.nc*ig*nts + 7*nts;
+         bzz = gf + gfp.nc*ig*nts + 8*nts;
+         bxy = gf + gfp.nc*ig*nts + 9*nts;
+         bxz = gf + gfp.nc*ig*nts + 10*nts;
+         byz = gf + gfp.nc*ig*nts + 11*nts;
+         cxx = gf + gfp.nc*ig*nts + 12*nts;
+         cyy = gf + gfp.nc*ig*nts + 13*nts;
+         czz = gf + gfp.nc*ig*nts + 14*nts;
+         cxy = gf + gfp.nc*ig*nts + 15*nts;
+         cxz = gf + gfp.nc*ig*nts + 16*nts;
+         cyz = gf + gfp.nc*ig*nts + 17*nts;
+
+         sum = sum + (*scl)*(gfh[ig].mu)*(gfh[ig].wt);
+
+         xamp = (*scl)*(gfh[ig].wt)/(gfh[ig].xmom);
+         yamp = (*scl)*(gfh[ig].wt)/(gfh[ig].ymom);
+         zamp = (*scl)*(gfh[ig].wt)/(gfh[ig].zmom);
+
+         for(it=0;it<gfh[ig].nt;it++)
+            {
+            sx = xamp*(axx[it]*mxx + ayy[it]*myy + azz[it]*mzz
+               + axy[it]*mxy + axz[it]*mxz + ayz[it]*myz);
+
+            sy = yamp*(bxx[it]*mxx + byy[it]*myy + bzz[it]*mzz
+               + bxy[it]*mxy + bxz[it]*mxz + byz[it]*myz);
+
+            sz = zamp*(cxx[it]*mxx + cyy[it]*myy + czz[it]*mzz
+               + cxy[it]*mxy + cxz[it]*mxz + cyz[it]*myz);
+
+            gfe[it] = sx*sinA + sy*cosA;
+            gfn[it] = sx*cosA - sy*sinA;
+            gfv[it] = -sz;
+            }
+         }
+      }
+   }
+
+*scl = sum;  /* scl now contains the moment released for this point source */
+}
+
+void getname_gf(char *str,char *gfname,struct gfheader *gfh,struct gfparam gfpar)
+{
+char ndx[16], edx[16], ddx[16];
+
+if(gfpar.flag3d == 0)
+   {
+   sprintf(str,"%s%.4d%.4d",gfname,(1 + gfh->id),(1 + gfh->ir));
+   }
+else
+   {
+   if(gfpar.gfn[gfh->ir] < 0.0)
+      sprintf(ndx,"-%.6d",(int)(-1000.0*gfpar.gfn[gfh->ir] + 0.5));
+   else
+      sprintf(ndx,"+%.6d",(int)(1000.0*gfpar.gfn[gfh->ir] + 0.5));
+
+   if(gfpar.gfe[gfh->ir] < 0.0)
+      sprintf(edx,"-%.6d",(int)(-1000.0*gfpar.gfe[gfh->ir] + 0.5));
+   else
+      sprintf(edx,"+%.6d",(int)(1000.0*gfpar.gfe[gfh->ir] + 0.5));
+
+   sprintf(ddx,"%.5d",(int)(1000.0*gfpar.gfd[gfh->id] + 0.5));
+
+   sprintf(str,"D%s/%s_n%se%sd%s.sgt",ddx,gfname,ndx,edx,ddx);
+   }
+}
+
+int check_name(char *str,char *list,int n,int blen)
+{
+int i, lf;
+char *lptr;
+
+lf = 0;
+i = 0;
+while(i < n)
+   {
+   lptr = list + i*blen;
+   if(strcmp(str,lptr) == 0)
+      {
+      lf = 1;
+      i = n;
+      }
+    else
+      i++;
+   }
+
+return(lf);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/include.h
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/include.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/include.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,20 @@
+#include <errno.h>
+#include <fcntl.h>
+#include <math.h>
+#include <stdio.h>
+#include <stdarg.h>
+#include <unistd.h>
+#include <stdlib.h>
+#include <string.h>
+
+#include <sys/file.h>
+#include <sys/resource.h>
+#include <sys/signal.h>
+#include <sys/stat.h>
+#include <sys/syscall.h>
+#include <sys/time.h>
+#include <sys/types.h>
+
+#include "../SlipModel/StandRupFormat/structure.h"
+#include "../SlipModel/StandRupFormat/function.h"
+#include "defs.h"

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/iofunc.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/iofunc.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/iofunc.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,264 @@
+#include        "include.h"
+#include        "structure.h"
+#include        "function.h"
+
+FILE *fopfile(char *name,char *mode)
+{
+FILE *fp;
+
+if((fp = fopen(name,mode)) == NULL)
+   {
+   fprintf(stderr,"CAN'T FOPEN FILE = %s, MODE = %s\n", name, mode);
+   exit(-1);
+   }
+return(fp);
+}
+
+int opfile_ro(char *name)
+{
+int fd;
+if ((fd = open (name, O_RDONLY, 0444)) == -1)
+   fprintf (stderr, "CAN'T OPEN FILE %s\n", name);
+return (fd);
+}
+
+int opfile(char *name)
+{
+int fd;
+if ((fd = open (name, O_RDWR, 0664)) == -1)
+   fprintf (stderr, "CAN'T OPEN FILE %s\n", name);
+return (fd);
+}
+
+int croptrfile(char *name)
+{
+int fd;
+if ((fd = open (name, O_CREAT | O_TRUNC | O_RDWR, 0664)) == -1)
+   fprintf (stderr, "CAN'T OPEN FILE %s\n", name);
+return (fd);
+}
+
+int reed(int fd, void *pntr, int length)
+{
+int temp;
+if ((temp = read(fd, pntr, length)) < length)
+   {
+   fprintf (stderr, "READ ERROR\n");
+   fprintf (stderr, "%d attempted  %d read\n", length, temp);
+   exit(-1);
+   }
+return(temp);
+}
+
+int rite(int fd, void *pntr, int length)
+{
+int temp;
+if ((temp = write(fd, pntr, length)) < length)
+   {
+   fprintf (stderr, "WRITE ERROR\n");
+   fprintf (stderr, "%d attempted  %d written\n", length, temp);
+   exit(-1);
+   }
+return(temp);
+}
+
+void *check_realloc(void *ptr,size_t len)
+{
+ptr = (char *) realloc (ptr,len);
+
+if(ptr == NULL)
+   {
+   fprintf(stderr,"*****  memory reallocation error\n");
+   exit(-1);
+   }
+
+return(ptr);
+}
+
+void *check_malloc(size_t len)
+{
+char *ptr;
+
+ptr = (char *) malloc (len);
+ 
+if(ptr == NULL)
+   {
+   fprintf(stderr,"*****  memory allocation error\n");
+   exit(-1);
+   }
+ 
+return(ptr);
+}
+
+void fortran_rite(int fd,int nargs, ...)
+{
+va_list ap;
+void *ptr[MAX_VAR_LIST];
+int len[MAX_VAR_LIST];
+int totlen = 0;
+int i;
+
+va_start(ap,nargs);
+for(i=0;i<nargs;i++)
+   {
+   ptr[i] = va_arg(ap,void *);
+   len[i] = va_arg(ap,int);
+   totlen = totlen + len[i];
+   }
+va_end(ap);
+
+rite(fd,&totlen,sizeof(int));
+
+for(i=0;i<nargs;i++)
+   rite(fd,ptr[i],len[i]);
+
+rite(fd,&totlen,sizeof(int));
+}
+
+void write_seis_ascii(char* sname, char* comp, float *st, float *dt, int nt, float *ts, char* filename) {
+  char stitle[128], header[128];
+  int i, j, nt6;
+  char* full_filename = malloc(sizeof(char) * (strlen(filename) + strlen(comp) + 2));  full_filename = strcpy(full_filename, filename);
+  full_filename = strcat(full_filename, ".");
+  full_filename = strcat(full_filename, comp);
+  FILE* fpw = fopfile(full_filename,"w");
+
+  sprintf(stitle,"%-10s%3s %s\n",sname,comp,"TITLE");
+  fprintf(fpw,"%s",stitle);
+
+  sprintf(header,"%d %12.5e 0 0 %12.5e 0.0 0.0 0.0\n",nt,*dt,*ts);
+  fprintf(fpw,"%s",header);
+
+  for (i=0; i<nt; i++) {
+	fprintf(fpw,"%13.5e",st[i]);
+	if ((i+1)%6==0) {
+	  fprintf(fpw,"\n");
+	}
+  }
+  if (nt%6!=0) {
+	fprintf(fpw,"\n");
+  }
+  fflush(fpw);
+  fclose(fpw);
+  free(full_filename);
+}
+
+void write_seis_binary(float* st, float* dt, int nt, float* ts, char* filename) {
+  int written;
+  char outfile[256];
+  FILE* fpout;
+  //sprintf(outfile, "%s.%s", filename, comp);
+  fpout = fopfile(filename, "wb");
+  written = fwrite(st, sizeof(float), nt, fpout);
+  if (written!=nt) {
+	fprintf(stderr, "Error in writing to file %s; wrote %d instead of %d floats.\n", filename, written, nt);
+	exit(-2);
+  }
+  fflush(fpout);
+  fclose(fpout);
+}
+
+void write_seis(char* filename, char *sname,char *comp,float *st,float *dt,int nt,float *ts, int output_binary) {
+  FILE *fopfile(), *fpw;
+  int i, j, nt6;
+  //char outfile[256];
+  
+  //sprintf(outfile,"%s.%s",dir,stat,comp);
+  
+  if (!output_binary) {
+	write_seis_ascii(sname, comp, st, dt, nt, ts, filename);
+  } else {
+	write_seis_binary(st, dt, nt, ts, filename);
+  }
+}
+
+
+char *skipval(int j,char *str)
+{
+while(str[0] == ' ' || str[0] == '\t' || str[0] == '\b' || str[0] == '\n')
+   str++;
+
+while(j--)
+   {
+   while(str[0] != ' ' && str[0] != '\t' && str[0] != '\b' && str[0] != '\n')
+      str++;
+
+   while(str[0] == ' ' || str[0] == '\t' || str[0] == '\b' || str[0] == '\n')
+      str++;
+   }
+
+return(str);
+}
+
+void makedir(char *ipath)
+{
+struct stat sbuf;
+char stmp[256], str[128], path[1024];
+int rtn, j;
+mode_t mode = 00777;
+
+strcpy(path,ipath);
+
+j = 0;
+while(path[j] != '\0')
+   j++;
+
+j--;
+while(path[j] == '/')
+   j--;
+path[j+1] = '\0';
+path[j+2] = '\0';
+
+j = 0;
+while(path[j] != '\0')
+   {
+   while(path[j] != '/' && path[j] != '\0')
+      j++;
+
+   if(j != 0)
+      {
+      strncpy(stmp,path,j);
+      stmp[j] = '\0';
+
+      rtn = stat(stmp,&sbuf); /* stat directory path to see if it already exists */
+
+      if(rtn == -1 && errno == ENOENT) /* try to make the directory path */
+         {
+         rtn = mkdir(stmp,mode);
+
+         if(rtn == -1)
+            {
+            if(errno != EEXIST)
+               {
+               sprintf(str,"makedir() cannot make directory %s, exiting",stmp);
+               perror(str);
+               exit(-1);
+               }
+            }
+         }
+
+      else if(rtn == -1 && errno != ENOENT) /* some other problem */
+         {
+         sprintf(str,"problem with stat() on %s, exiting",stmp);
+         perror(str);
+         exit(-1);
+         }
+      }
+   j++;
+   }
+
+/*
+   Double check to make sure directory exists.  This is a brute-force
+   method, but I ran inot problems with automounted directories using the
+   error-checking above.  RWG 9/20/99
+*/
+
+rtn = mkdir(stmp,mode);
+if(rtn == -1 && errno != EEXIST)
+   {
+   sprintf(str,"makedir() cannot make directory %s, exiting",stmp);
+   perror(str);
+   exit(-1);
+   }
+
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,827 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+main(int ac,char **av)
+{
+FILE *fopfile(), *fpr, *fpwsv, *fpwrt, *fpwtr;
+struct gfheader gfhead[4];
+float maxgft;
+struct gfparam gfpar;
+float *gf, *gfmech;
+int kg, ig;
+
+float kperd_n, kperd_e;
+float elon = -118.0;
+float elat = 34.0;
+float slat, slon, snorth, seast;
+double e2, den, g2, lat0;
+
+float strike = 0.0;
+float dip = 90.0;
+float rake = 180.0;
+float dtop = 0.1;
+
+float len, wid;
+int i, j, k, l, ip, ip0;
+
+int tshift_timedomain = 0;
+
+struct beroza brm;
+struct okumura orm;
+struct gene grm;
+struct rob rrm;
+struct standrupformat srf;
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+struct mechparam mechpar;
+int maxmech;
+
+int nstf;
+float vslip;
+
+int apv_off = 0;
+int nseg = -1;
+int inbin = 0;
+
+float tsfac = 0.0;
+float tmom = 0.0;
+
+float rupvel = -1.0;
+float shal_vrup = 1.0;
+float htol = 0.1;
+double rayp, rupt_rad;
+float rvfrac, rt, *randt;
+struct velmodel vmod, rvmod;
+
+int seed = 1;
+int randtime = 0;
+float perc_randtime = 0.0;
+float delt = 0.0;
+int smooth_randt = 2;
+int gaus_randt = 0;
+int randmech = 0;
+float deg_randstk = 0.0;
+float deg_randdip = 0.0;
+float deg_randrak = 0.0;
+float zap = 0.0;
+int nn;
+
+int kp;
+float *rwt, sum;
+float randslip = 0.0;
+
+float len2, ds0, dd0, dsf, ddf, s2;
+int ntsum, maxnt, it, ntp2;
+float mindt;
+float x0, y0, z0, dd;
+float x0c, ddc, avgvrup;
+float shypo, dhypo;
+int nsubstk, nsubdip;
+int nfinestk = 1;
+int nfinedip = 1;
+int ntout = -99;
+
+float *stf, *seis, *subseis, *se, *sn, *sv;
+float cosS, sinS, cosA, sinA;
+float scale, arg, cosD, sinD;
+float xstr, xdip, xrak;
+float area, sfac;
+float trise;
+
+float azi, rng, deast, dnorth;
+int ncomp = 3;
+
+float *space;
+float dtout = -1.0;
+
+int fdw;
+char gfpath[128], gfname[64];
+char rtimesfile[128], modfile[128], outfile[128];
+char slipfile[128], rupmodfile[128], outdir[128], stat[64], sname[8];
+char rupmodtype[128], trisefile[128];
+char string[256];
+
+int write_ruptimes = 0;
+int write_slipvals = 0;
+int write_risetime = 0;
+
+double rperd = 0.017453293;
+float normf = 1.0e+10;  /* km^2 -> cm^2 */
+
+float targetslip = 1.0;  /* slip in cm on each subfault */
+float slip_conv = 1.0;  /* input slip in cm on each subfault */
+
+float half = 0.5;
+float two = 2.0;
+
+int latloncoords = 0;
+
+float tstart = 0.0;
+
+rtimesfile[0] = '\0';
+slipfile[0] = '\0';
+trisefile[0] = '\0';
+sname[0] = '\0';
+sprintf(rupmodtype,"NULL");
+
+sprintf(gfpar.gftype,"fk");
+
+setpar(ac, av);
+getpar("latloncoords","d",&latloncoords);
+
+if(latloncoords == 1)
+   {
+   getpar("elat","f",&elat);
+   getpar("elon","f",&elon);
+   mstpar("slat","f",&slat);
+   mstpar("slon","f",&slon);
+   }
+else
+   {
+   mstpar("snorth","f",&snorth);
+   mstpar("seast","f",&seast);
+   }
+
+getpar("dtop","f",&dtop);
+getpar("strike","f",&strike);
+getpar("dip","f",&dip);
+getpar("rake","f",&rake);
+
+getpar("rupmodtype","s",rupmodtype);
+
+if(strcmp(rupmodtype,"BEROZA") == 0)
+   {
+   brm.inc_stk = 1;
+   brm.inc_dip = 1;
+   brm.generic_risetime = -1.0;
+   brm.robstf = 0;
+
+   mstpar("rupmodfile","s",rupmodfile);
+   mstpar("npstk","d",&brm.npstk);
+   mstpar("npdip","d",&brm.npdip);
+   mstpar("inc_stk","d",&brm.inc_stk);
+   mstpar("inc_dip","d",&brm.inc_dip);
+
+   mstpar("len","f",&len);
+   mstpar("wid","f",&wid);
+
+   getpar("robstf","d",&brm.robstf);
+   getpar("generic_risetime","f",&brm.generic_risetime);
+   if(brm.robstf == 0 && brm.generic_risetime > 0.0)
+      {
+      mstpar("generic_pulsedur","f",&brm.generic_pulsedur);
+      mstpar("generic_t2","f",&brm.generic_t2);
+      }
+
+   getpar("slip_conv","f",&slip_conv);
+
+   mstpar("outdir","s",outdir);
+   mstpar("stat","s",stat);
+   }
+else if(strcmp(rupmodtype,"OKUMURA") == 0)
+   {
+   mstpar("rupmodfile","s",rupmodfile);
+
+   getpar("slip_conv","f",&slip_conv);
+
+   mstpar("outdir","s",outdir);
+   mstpar("stat","s",stat);
+   }
+else if(strcmp(rupmodtype,"GENE") == 0)
+   {
+   mstpar("rupmodfile","s",rupmodfile);
+
+   getpar("slip_conv","f",&slip_conv);
+
+   mstpar("outdir","s",outdir);
+   mstpar("stat","s",stat);
+   }
+else if(strcmp(rupmodtype,"ROB") == 0)
+   {
+   mstpar("rupmodfile","s",rupmodfile);
+
+   getpar("slip_conv","f",&slip_conv);
+
+   mstpar("outdir","s",outdir);
+   mstpar("stat","s",stat);
+
+   mstpar("shypo","f",&shypo);
+   mstpar("dhypo","f",&dhypo);
+
+   getpar("tsfac","f",&tsfac);
+
+   getpar("rupvel","f",&rupvel);
+   if(rupvel < 0.0)
+      {
+      mstpar("modfile","s",modfile);
+      mstpar("rvfrac","f",&rvfrac);
+      getpar("shal_vrup","f",&shal_vrup);
+      }
+   }
+else if(strcmp(rupmodtype,"SRF") == 0)
+   {
+   mstpar("rupmodfile","s",rupmodfile);
+
+   getpar("slip_conv","f",&slip_conv);
+   getpar("nseg","d",&nseg);
+   getpar("inbin","d",&inbin);
+
+   mstpar("outdir","s",outdir);
+   mstpar("stat","s",stat);
+   }
+else
+   {
+   mstpar("shypo","f",&shypo);
+   mstpar("dhypo","f",&dhypo);
+
+   mstpar("nsubstk","d",&nsubstk);
+   mstpar("nsubdip","d",&nsubdip);
+
+   mstpar("len","f",&len);
+   mstpar("wid","f",&wid);
+
+   getpar("rupvel","f",&rupvel);
+   if(rupvel < 0.0)
+      {
+      mstpar("modfile","s",modfile);
+      mstpar("rvfrac","f",&rvfrac);
+      getpar("shal_vrup","f",&shal_vrup);
+      }
+
+   getpar("targetslip","f",&targetslip);
+
+   mstpar("outfile","s",outfile);
+   }
+
+getpar("nfinestk","d",&nfinestk);
+getpar("nfinedip","d",&nfinedip);
+
+mstpar("gftype","s",gfpar.gftype);
+
+if((strncmp(gfpar.gftype,"fk",2) == 0) || (strncmp(gfpar.gftype,"FK",2) == 0))
+   {
+   gfpar.flag3d = 0;
+   gfpar.nc = 8;
+   mstpar("gflocs","s",gfpar.gflocs);
+   mstpar("gftimes","s",gfpar.gftimes);
+
+   gfpar.swap_flag = 0;
+   getpar("gf_swap_bytes","d",&gfpar.swap_flag);
+   }
+else if((strncmp(gfpar.gftype,"3d",2) == 0) || (strncmp(gfpar.gftype,"3D",2) == 0))
+   {
+   gfpar.flag3d = 1;
+   gfpar.nc = 18;
+   mstpar("gflocs","s",gfpar.gflocs);
+   mstpar("gfrange_tolerance","f",&gfpar.rtol);
+
+   gfpar.use_depdir = 1;
+   getpar("use_gf3d_depdir","d",&gfpar.use_depdir);
+   }
+else
+   {
+   fprintf(stderr,"gftype= %s invalid option, exiting...\n",gfpar.gftype);
+   exit(-1);
+   }
+
+mstpar("gfpath","s",gfpath);
+mstpar("gfname","s",gfname);
+
+mstpar("maxnt","d",&maxnt);
+mstpar("mindt","f",&mindt);
+getpar("ntout","d",&ntout);
+getpar("dtout","f",&dtout);
+
+getpar("tstart","f",&tstart);
+getpar("rtimesfile","s",rtimesfile);
+getpar("slipfile","s",slipfile);
+getpar("trisefile","s",trisefile);
+
+getpar("seed","d",&seed);
+getpar("randtime","d",&randtime);
+if(randtime >= 1)
+   mstpar("perc_randtime","f",&perc_randtime);
+if(randtime >= 2)
+   getpar("delt","f",&delt);
+getpar("smooth_randt","d",&smooth_randt);
+getpar("gaus_randt","d",&gaus_randt);
+
+getpar("randslip","f",&randslip);
+
+getpar("randmech","d",&randmech);
+if(randmech)
+   {
+   mstpar("deg_randstk","f",&deg_randstk);
+   mstpar("deg_randdip","f",&deg_randdip);
+   mstpar("deg_randrak","f",&deg_randrak);
+   }
+
+getpar("tshift_timedomain","d",&tshift_timedomain);
+
+getpar("sname","s",sname);
+
+endpar();
+
+fprintf(stderr,"type= %s\n",rupmodtype);
+
+maxmech = 1;
+mechpar.nmech = 1;
+mechpar.flag[0] = U1FLAG;
+mechpar.flag[1] = 0;
+mechpar.flag[2] = 0;
+
+if(strcmp(rupmodtype,"BEROZA") == 0)
+   {
+   len2 = 0.5*len;
+
+   read_beroza(&brm,rupmodfile,&len2);
+
+   nsubstk = (brm.npstk) - 1;
+   nsubdip = (brm.npdip) - 1;
+
+   targetslip = slip_conv;
+   }
+else if(strcmp(rupmodtype,"OKUMURA") == 0)
+   {
+   read_okumura(&orm,rupmodfile,&len2);
+
+   nsubstk = orm.nstk;
+   nsubdip = orm.ndip;
+
+   len = orm.flen;
+   wid = orm.fwid;
+
+   targetslip = slip_conv;
+   }
+else if(strcmp(rupmodtype,"GENE") == 0)
+   {
+   read_gene(&grm,rupmodfile,&len2);
+
+   nsubstk = grm.nstk;
+   nsubdip = grm.ndip;
+
+   len = grm.flen;
+   wid = grm.fwid;
+
+   targetslip = slip_conv;
+   }
+else if(strcmp(rupmodtype,"ROB") == 0)
+   {
+   read_rob(&rrm,rupmodfile,&tsfac);
+
+/*   07/15/04
+     For now, just use the getpar values, eventually we should modify
+     in order to use the values read in from the slipmodel
+*/
+
+   rrm.elon = elon;
+   rrm.elat = elat;
+   rrm.stk = strike;
+   rrm.dip = dip;
+   rrm.dtop = dtop;
+   rrm.shyp = shypo;
+   rrm.dhyp = dhypo;
+
+   nsubstk = rrm.nstk;
+   nsubdip = rrm.ndip;
+
+   len = rrm.flen;
+   wid = rrm.fwid;
+
+   len2 = 0.5*len;
+
+   if(rupvel < 0.0)
+      {
+      read_velmodel(modfile,&vmod);
+      conv2vrup(&vmod,&rvmod,&dip,&dtop,&wid,&rvfrac,&shal_vrup);
+      }
+
+   targetslip = slip_conv;
+   }
+else if(strcmp(rupmodtype,"SRF") == 0)
+   {
+   maxmech = 3;
+   nfinestk = 1;
+   nfinedip = 1;
+
+   read_srf(&srf,rupmodfile,inbin);
+   prect_ptr = &srf.srf_prect;
+   prseg_ptr = prect_ptr->prectseg;
+   apnts_ptr = &srf.srf_apnts;
+   apval_ptr = apnts_ptr->apntvals;
+
+/*
+03/03/06
+
+     Default is to use all POINTS specified in SRF file.  This is
+     done with nseg=-1.  Values for 'shypo', 'dhypo', 'len', 'wid'
+     are not important.
+
+     -or-
+
+     Only use one segment from standard rupture model format;
+     specified with 'nseg'.
+*/
+
+   if(nseg < 0)  /* do all POINTS */
+      {
+      shypo = 0.0;
+      dhypo = 0.0;
+
+      nsubstk = srf.srf_apnts.np;
+      nsubdip = 1;
+
+      len = 10.0;
+      wid = 10.0;
+
+      apv_off = 0;
+      }
+   else
+      {
+      elon = prseg_ptr[nseg].elon;
+      elat = prseg_ptr[nseg].elat;
+      strike = prseg_ptr[nseg].stk;
+      dip = prseg_ptr[nseg].dip;
+      dtop = prseg_ptr[nseg].dtop;
+      shypo = prseg_ptr[nseg].shyp;
+      dhypo = prseg_ptr[nseg].dhyp;
+
+      nsubstk = prseg_ptr[nseg].nstk;
+      nsubdip = prseg_ptr[nseg].ndip;
+
+      len = prseg_ptr[nseg].flen;
+      wid = prseg_ptr[nseg].fwid;
+
+   /* reset POINTS pointer to appropriate segment */
+
+      apv_off = 0;
+      for(i=0;i<nseg;i++)
+         apv_off = apv_off + prseg_ptr[i].nstk*prseg_ptr[i].ndip;
+
+      apval_ptr = apval_ptr + apv_off;
+      }
+
+   len2 = 0.5*len;
+   targetslip = slip_conv;
+   }
+else
+   {
+   len2 = 0.5*len;
+
+   if(rupvel < 0.0)
+      {
+      read_velmodel(modfile,&vmod);
+      conv2vrup(&vmod,&rvmod,&dip,&dtop,&wid,&rvfrac,&shal_vrup);
+      }
+   }
+
+if(randtime)
+   {
+   fprintf(stderr,"**** Initiation time randomized\n");
+   fprintf(stderr,"          slow variation= +/-%.0f percent\n",100*perc_randtime);
+   fprintf(stderr,"          fast variation= +/-%g sec\n",delt);
+   }
+else
+   {
+   perc_randtime = 0.0;
+   delt = 0.0;
+   }
+
+if(randmech)
+   {
+   fprintf(stderr,"**** strike randomized by +/-%.0f degrees\n",deg_randstk);
+   fprintf(stderr,"        dip randomized by +/-%.0f degrees\n",deg_randdip);
+   fprintf(stderr,"       rake randomized by +/-%.0f degrees\n",deg_randrak);
+   }
+else
+   {
+   deg_randstk = 0.0;
+   deg_randdip = 0.0;
+   deg_randrak = 0.0;
+   }
+
+arg = strike*rperd;
+cosS = cos(arg);
+sinS = sin(arg);
+
+arg = dip*rperd;
+cosD = cos(arg);
+sinD = sin(arg);
+
+get_gfpars(&gfpar);
+
+if(latloncoords) /* calculate lat,lon to km conversions */
+   set_ne(&elon,&elat,&slon,&slat,&snorth,&seast);
+
+if(dtout < 0.0)
+   dtout = mindt;
+
+if(dtout < mindt)
+   maxnt = (maxnt*mindt/dtout);
+
+ntsum = 2;
+while(ntsum < 4*maxnt)
+   ntsum = ntsum*2;
+
+if(ntout < 0)
+   ntout = ntsum;
+
+gf = (float *) check_malloc (4*gfpar.nc*ntsum*sizeof(float));
+gfmech = (float *) check_malloc (maxmech*12*ntsum*sizeof(float));
+space = (float *) check_malloc (2*ntsum*sizeof(float));
+
+seis = (float *) check_malloc (3*ntout*sizeof(float));
+subseis = (float *) check_malloc (maxmech*3*ntout*sizeof(float));
+stf = (float *) check_malloc (ntout*sizeof(float));
+
+/* Calculate subfault responses */
+
+ds0 = len/nsubstk;
+dd0 = wid/nsubdip;
+
+dsf = ds0/nfinestk;
+ddf = dd0/nfinedip;
+
+area = (len*wid)/(nsubstk*nsubdip);
+
+sfac = targetslip/(nfinestk*nfinedip); /* conversion factor for scaling to moment */
+if(gfpar.flag3d == 0)  /* add addtnl factors to convert mu & area for 1d GFs */
+   {
+   if(strcmp(rupmodtype,"SRF") == 0)
+      sfac = sfac*normf;
+   else
+      sfac = sfac*normf*normf*area;
+   }
+
+rwt = (float *) check_malloc (nfinestk*nfinedip*sizeof(float));
+
+if(randtime)
+   {
+   nn = nsubstk*nsubdip*nfinestk*nfinedip;
+   randt = (float *) check_malloc (nn*sizeof(float));
+
+   rand_init(randt,&perc_randtime,&seed,nsubstk,nsubdip,nfinestk,nfinedip,smooth_randt,gaus_randt);
+   }
+
+/* open output file */
+if(strcmp(rupmodtype,"NULL") == 0)
+   fdw = croptrfile(outfile);
+
+if(rtimesfile[0] != '\0')
+   {
+   write_ruptimes = 1;
+   fpwrt = fopfile(rtimesfile,"w");
+   }
+
+if(slipfile[0] != '\0')
+   {
+   write_slipvals = 1;
+   fpwsv = fopfile(slipfile,"w");
+   }
+
+if(trisefile[0] != '\0')
+   {
+   write_risetime = 1;
+   fpwtr = fopfile(trisefile,"w");
+   }
+
+zapit(seis,3*ntout);
+
+for(i=0;i<4;i++)
+   {
+   gfhead[i].id = -1;  /* initialize: -1 means none read yet */
+   gfhead[i].ir = -1;  /* initialize: -1 means none read yet */
+   }
+
+tmom = 0.0;
+for(i=0;i<nsubstk;i++)
+   {
+   for(j=0;j<nsubdip;j++)
+      {
+      sum = 0.0;
+      for(l=0;l<nfinedip*nfinestk;l++)
+	 {
+	 rwt[l] = randslip*sfrand(&seed);
+	 sum = sum + rwt[l];
+         }
+
+      sum = sum/(float)(nfinedip*nfinestk);
+      for(l=0;l<nfinedip*nfinestk;l++)
+	 rwt[l] = rwt[l] - sum;
+
+      zapit(subseis,maxmech*3*ntout);
+
+      ip0 = i + j*nsubstk;
+
+      for(k=0;k<nfinestk;k++)
+	 {
+	 x0 = i*ds0 + (k+0.5)*dsf - len2;
+
+	 for(l=0;l<nfinedip;l++)
+	    {
+	    dd = j*dd0 + (l+0.5)*ddf;
+	    y0 = dd*cosD;
+	    z0 = dtop + dd*sinD;
+
+	    kp = l + k*nfinedip;
+	    ip = kp + (j + i*nsubdip)*nfinestk*nfinedip;
+
+            if(strcmp(rupmodtype,"BEROZA") == 0)
+	       {
+               get_brmpars(&brm,i,j,&x0,&dd,&rt,&vslip);
+	       trise = brm.tdur[ip0];
+	       }
+            else if(strcmp(rupmodtype,"OKUMURA") == 0)
+	       {
+               get_ormpars(&orm,i,j,&x0,&dd,&rt,&vslip);
+	       trise = orm.rist[ip0];
+	       }
+            else if(strcmp(rupmodtype,"GENE") == 0)
+	       {
+               get_grmpars(&grm,i,j,&x0,&dd,&rt,&vslip,&rake);
+	       trise = (grm.nt[ip0]-1)*grm.tdel + grm.trise;
+	       }
+            else if(strcmp(rupmodtype,"ROB") == 0)
+	       {
+               get_rrmpars(&rrm,i,j,&x0,&dd,&rt,&vslip,&rake,&tsfac);
+	       trise = rrm.trise[ip0];
+
+	       if(rt < 0.0)
+		  {
+	          if(rupvel < 0.0)
+	             get_rupt(&rvmod,&htol,&dhypo,&dd,&shypo,&x0,&rayp,&rupt_rad,&rt);
+	          else
+	             rt = sqrt((shypo-x0)*(shypo-x0)+(dhypo-dd)*(dhypo-dd))/rupvel;
+		  rt = rt + tsfac;
+		  }
+
+               if(rt < 0.0)
+                  rt = 0.0;
+	       }
+            else if(strcmp(rupmodtype,"SRF") == 0)
+	       {
+               get_srfpars(&srf,apv_off,ip0,&rt,&vslip,&strike,&dip,&rake,&mechpar);
+	       trise = apval_ptr[ip0].dt*apval_ptr[ip0].nt1;
+
+/*
+   For case when nfinestk,nfinedip > 1 =>
+   calculate avg. Vr based on subfault center, then re-estimate Tinit 
+   when nfinestk = nfinedip = 1, x0c=x0, ddc=dd.
+*/
+	       if(nfinestk != 1 || nfinedip != 1)
+	          {
+	          x0c = (i+0.5)*ds0 - len2;
+	          ddc = (j+0.5)*dd0;
+	          avgvrup = sqrt((shypo-x0c)*(shypo-x0c)+(dhypo-ddc)*(dhypo-ddc))/rt;
+	          rt = sqrt((shypo-x0)*(shypo-x0)+(dhypo-dd)*(dhypo-dd))/avgvrup;
+		  }
+	       }
+            else
+               {
+               vslip = 1.0;
+
+	       if(rupvel < 0.0)
+	          get_rupt(&rvmod,&htol,&dhypo,&dd,&shypo,&x0,&rayp,&rupt_rad,&rt);
+	       else
+	          rt = sqrt((shypo-x0)*(shypo-x0)+(dhypo-dd)*(dhypo-dd))/rupvel;
+               }
+
+	    if(randtime)
+	       rt = rt*(1.0 + randt[ip]);
+	    if(randtime == 2)
+	       {
+	       rt = rt + delt*sfrand(&seed);
+	       if(rt < 0.0)
+		  rt = 0.0;
+               }
+
+	    if(write_ruptimes == 1)
+	       fprintf(fpwrt,"%13.5e %13.5e %13.5e\n",x0+len2,dd,rt);
+
+            vslip = (1.0 + rwt[kp])*vslip;
+
+            if(write_slipvals == 1)
+               fprintf(fpwsv,"%13.5e %13.5e %13.5e\n",x0+len2,dd,slip_conv*vslip);
+
+	    if(write_risetime == 1)
+	       fprintf(fpwtr,"%13.5e %13.5e %13.5e\n",x0+len2,dd,trise);
+
+            if(strcmp(rupmodtype,"SRF") == 0)
+	       get_ard_srf(&srf,apv_off,ip0,&azi,&rng,&z0,&deast,&dnorth,&slon,&slat);
+            else
+	       get_radazi(&azi,&rng,&deast,&dnorth,&x0,&y0,&cosS,&sinS,&seast,&snorth);
+
+	    find_4gf(gfpar,gfhead,&rng,&z0,&deast,&dnorth);
+
+	    fprintf(stderr,"i=%3d j=%3d k=%3d l=%3d ",i,j,k,l);
+	    fprintf(stderr," s=%7.2f d=%7.2f",x0,dd);
+	    fprintf(stderr," dn=%10.5f de=%10.5f",dnorth,deast);
+	    fprintf(stderr," a=%7.2f r=%7.2f\n",azi,rng);
+
+            read_4gf(gfpath,gfname,gf,ntsum,gfhead,gfpar,&maxgft,&maxnt,&dtout,space);
+
+	    if(randmech)
+	       {
+	       mechpar.stk = strike + deg_randstk*sfrand(&seed);
+	       mechpar.dip = dip + deg_randdip*sfrand(&seed);
+	       mechpar.rak = rake + deg_randrak*sfrand(&seed);
+	       }
+	    else
+	       {
+	       mechpar.stk = strike;
+	       mechpar.dip = dip;
+	       mechpar.rak = rake;
+	       }
+
+            if(strcmp(rupmodtype,"SRF") == 0)
+	       scale = sfac*apval_ptr[ip0].area;
+	    else
+	       scale = sfac;
+
+	    mech_4gf(gfmech,gf,gfhead,gfpar,ntsum,mechpar,&azi,&scale);
+
+/* scale now contains the moment released by this point source */
+	    tmom = tmom + vslip*scale;
+
+	    sum_4gf(subseis,ntout,gfmech,gfhead,ntsum,maxnt,&rt,&maxgft,&tstart,tshift_timedomain,mechpar);
+	    }
+         }
+
+      z0 = dtop + (j+0.5)*dd0*sinD;
+
+      if(strcmp(rupmodtype,"BEROZA") == 0)
+	 beroza_stf(&brm,i,j,seis,subseis,stf,ntout,&dtout,&z0);
+      else if(strcmp(rupmodtype,"OKUMURA") == 0)
+	 okumura_stf(&orm,i,j,seis,subseis,stf,ntout,&dtout);
+      else if(strcmp(rupmodtype,"GENE") == 0)
+	 gene_stf(&grm,i,j,seis,subseis,stf,ntout,&dtout);
+      else if(strcmp(rupmodtype,"ROB") == 0)
+	 rob_stf(&rrm,i,j,seis,subseis,stf,ntout,&dtout,&z0);
+      else if(strcmp(rupmodtype,"SRF") == 0)
+	 srf_stf(&srf,apv_off,ip0,seis,subseis,stf,ntout,&dtout,mechpar,space);
+      else
+         {
+         sv = subseis;
+         sn = subseis + ntout;
+         se = subseis + 2*ntout;
+
+         fortran_rite(fdw,1,&ncomp,sizeof(int));
+
+         fortran_rite(fdw,2,&rng,sizeof(float),&tstart,sizeof(float));
+         fortran_rite(fdw,2,&ntout,sizeof(int),&dtout,sizeof(float));
+         fortran_rite(fdw,1,sn,ntout*sizeof(float));
+
+         fortran_rite(fdw,2,&rng,sizeof(float),&tstart,sizeof(float));
+         fortran_rite(fdw,2,&ntout,sizeof(int),&dtout,sizeof(float));
+         fortran_rite(fdw,1,se,ntout*sizeof(float));
+
+         fortran_rite(fdw,2,&rng,sizeof(float),&tstart,sizeof(float));
+         fortran_rite(fdw,2,&ntout,sizeof(int),&dtout,sizeof(float));
+         fortran_rite(fdw,1,sv,ntout*sizeof(float));
+         }
+      }
+   }
+
+if(strcmp(rupmodtype,"NULL") == 0)
+   close(fdw);
+else
+   {
+   sv = seis;
+   sn = seis + ntout;
+   se = seis + 2*ntout;
+
+   if(sname[0] == '\0')
+      {
+      strncpy(sname,stat,7);
+      sname[7] = '\0';
+      }
+
+   write_seis(outdir,stat,sname,"000",sn,&dtout,ntout,&tstart);
+   write_seis(outdir,stat,sname,"090",se,&dtout,ntout,&tstart);
+   write_seis(outdir,stat,sname,"ver",sv,&dtout,ntout,&tstart);
+
+   fprintf(stderr,"Total moment= %13.5e\n",tmom);
+   }
+
+if(write_ruptimes == 1)
+   {
+   fflush(fpwrt);
+   fclose(fpwrt);
+   }
+
+if(write_slipvals == 1)
+   {
+   fflush(fpwsv);
+   fclose(fpwsv);
+   }
+
+if(write_risetime == 1)
+   {
+   fflush(fpwtr);
+   fclose(fpwtr);
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim032906.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim032906.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim032906.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,774 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+main(int ac,char **av)
+{
+FILE *fopfile(), *fpr, *fpwsv, *fpwrt, *fpwtr;
+struct gfheader gfhead[4];
+float maxgft;
+struct gfparam gfpar;
+float *gf, *gfmech;
+int kg, ig;
+
+float kperd_n, kperd_e;
+float elat, elon, slat, slon, snorth, seast;
+double e2, den, g2, lat0;
+
+float len, wid, strike, dip, rake, dtop;
+int i, j, k, l, ip, ip0;
+
+int tshift_timedomain = 0;
+
+struct beroza brm;
+struct okumura orm;
+struct gene grm;
+struct rob rrm;
+struct standrupformat srf;
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+struct mechparam mechpar;
+int maxmech;
+
+int nstf;
+float vslip;
+
+int apv_off;
+int nseg = 0;
+int inbin = 0;
+
+float tsfac = 0.0;
+float tmom = 0.0;
+
+float rupvel = -1.0;
+float shal_vrup = 1.0;
+float htol = 0.1;
+double rayp, rupt_rad;
+float rvfrac, rt, *randt;
+struct velmodel vmod, rvmod;
+
+int seed = 1;
+int randtime = 0;
+float perc_randtime = 0.0;
+float delt = 0.0;
+int smooth_randt = 2;
+int gaus_randt = 0;
+int randmech = 0;
+float deg_randstk = 0.0;
+float deg_randdip = 0.0;
+float deg_randrak = 0.0;
+float zap = 0.0;
+int nn;
+
+int kp;
+float *rwt, sum;
+float randslip = 0.0;
+
+float len2, ds0, dd0, dsf, ddf, s2;
+int ntsum, maxnt, it, ntp2;
+float mindt;
+float x0, y0, z0, dd;
+float x0c, ddc, avgvrup;
+float shypo, dhypo;
+int nsubstk, nsubdip;
+int nfinestk = 1;
+int nfinedip = 1;
+int ntout = -99;
+
+float *stf, *seis, *subseis, *se, *sn, *sv;
+float cosS, sinS, cosA, sinA;
+float scale, arg, cosD, sinD;
+float xstr, xdip, xrak;
+float area, sfac;
+float trise;
+
+float azi, rng, deast, dnorth;
+int ncomp = 3;
+
+float *space;
+float dtout = -1.0;
+
+int fdw;
+char gfpath[128], gfname[64];
+char rtimesfile[128], modfile[128], outfile[128];
+char slipfile[128], rupmodfile[128], outdir[128], stat[64], sname[8];
+char rupmodtype[128], trisefile[128];
+char string[256];
+
+int write_ruptimes = 0;
+int write_slipvals = 0;
+int write_risetime = 0;
+
+double rperd = 0.017453293;
+float normf = 1.0e+10;  /* km^2 -> cm^2 */
+
+float targetslip = 1.0;  /* slip in cm on each subfault */
+float slip_conv = 1.0;  /* input slip in cm on each subfault */
+
+float half = 0.5;
+float two = 2.0;
+
+int latloncoords = 0;
+
+float tstart = 0.0;
+
+rtimesfile[0] = '\0';
+slipfile[0] = '\0';
+trisefile[0] = '\0';
+sname[0] = '\0';
+sprintf(rupmodtype,"NULL");
+
+sprintf(gfpar.gftype,"fk");
+
+setpar(ac, av);
+getpar("latloncoords","d",&latloncoords);
+
+if(latloncoords == 1)
+   {
+   mstpar("elat","f",&elat);
+   mstpar("elon","f",&elon);
+   mstpar("slat","f",&slat);
+   mstpar("slon","f",&slon);
+   }
+else
+   {
+   mstpar("snorth","f",&snorth);
+   mstpar("seast","f",&seast);
+   }
+
+mstpar("dtop","f",&dtop);
+mstpar("strike","f",&strike);
+mstpar("dip","f",&dip);
+mstpar("rake","f",&rake);
+
+getpar("rupmodtype","s",rupmodtype);
+
+if(strcmp(rupmodtype,"BEROZA") == 0)
+   {
+   brm.inc_stk = 1;
+   brm.inc_dip = 1;
+   brm.generic_risetime = -1.0;
+   brm.robstf = 0;
+
+   mstpar("rupmodfile","s",rupmodfile);
+   mstpar("npstk","d",&brm.npstk);
+   mstpar("npdip","d",&brm.npdip);
+   mstpar("inc_stk","d",&brm.inc_stk);
+   mstpar("inc_dip","d",&brm.inc_dip);
+
+   mstpar("len","f",&len);
+   mstpar("wid","f",&wid);
+
+   getpar("robstf","d",&brm.robstf);
+   getpar("generic_risetime","f",&brm.generic_risetime);
+   if(brm.robstf == 0 && brm.generic_risetime > 0.0)
+      {
+      mstpar("generic_pulsedur","f",&brm.generic_pulsedur);
+      mstpar("generic_t2","f",&brm.generic_t2);
+      }
+
+   getpar("slip_conv","f",&slip_conv);
+
+   mstpar("outdir","s",outdir);
+   mstpar("stat","s",stat);
+   }
+else if(strcmp(rupmodtype,"OKUMURA") == 0)
+   {
+   mstpar("rupmodfile","s",rupmodfile);
+
+   getpar("slip_conv","f",&slip_conv);
+
+   mstpar("outdir","s",outdir);
+   mstpar("stat","s",stat);
+   }
+else if(strcmp(rupmodtype,"GENE") == 0)
+   {
+   mstpar("rupmodfile","s",rupmodfile);
+
+   getpar("slip_conv","f",&slip_conv);
+
+   mstpar("outdir","s",outdir);
+   mstpar("stat","s",stat);
+   }
+else if(strcmp(rupmodtype,"ROB") == 0)
+   {
+   mstpar("rupmodfile","s",rupmodfile);
+
+   getpar("slip_conv","f",&slip_conv);
+
+   mstpar("outdir","s",outdir);
+   mstpar("stat","s",stat);
+
+   mstpar("shypo","f",&shypo);
+   mstpar("dhypo","f",&dhypo);
+
+   getpar("tsfac","f",&tsfac);
+
+   getpar("rupvel","f",&rupvel);
+   if(rupvel < 0.0)
+      {
+      mstpar("modfile","s",modfile);
+      mstpar("rvfrac","f",&rvfrac);
+      getpar("shal_vrup","f",&shal_vrup);
+      }
+   }
+else if(strcmp(rupmodtype,"SRF") == 0)
+   {
+   mstpar("rupmodfile","s",rupmodfile);
+
+   getpar("slip_conv","f",&slip_conv);
+   getpar("nseg","d",&nseg);
+   getpar("inbin","d",&inbin);
+
+   mstpar("outdir","s",outdir);
+   mstpar("stat","s",stat);
+   }
+else
+   {
+   mstpar("shypo","f",&shypo);
+   mstpar("dhypo","f",&dhypo);
+
+   mstpar("nsubstk","d",&nsubstk);
+   mstpar("nsubdip","d",&nsubdip);
+
+   mstpar("len","f",&len);
+   mstpar("wid","f",&wid);
+
+   getpar("rupvel","f",&rupvel);
+   if(rupvel < 0.0)
+      {
+      mstpar("modfile","s",modfile);
+      mstpar("rvfrac","f",&rvfrac);
+      getpar("shal_vrup","f",&shal_vrup);
+      }
+
+   getpar("targetslip","f",&targetslip);
+
+   mstpar("outfile","s",outfile);
+   }
+
+getpar("nfinestk","d",&nfinestk);
+getpar("nfinedip","d",&nfinedip);
+
+mstpar("gftype","s",gfpar.gftype);
+
+if((strncmp(gfpar.gftype,"fk",2) == 0) || (strncmp(gfpar.gftype,"FK",2) == 0))
+   {
+   gfpar.flag3d = 0;
+   gfpar.nc = 8;
+   mstpar("gflocs","s",gfpar.gflocs);
+   mstpar("gftimes","s",gfpar.gftimes);
+
+   gfpar.swap_flag = 0;
+   getpar("gf_swap_bytes","d",&gfpar.swap_flag);
+   }
+else if((strncmp(gfpar.gftype,"3d",2) == 0) || (strncmp(gfpar.gftype,"3D",2) == 0))
+   {
+   gfpar.flag3d = 1;
+   gfpar.nc = 18;
+   mstpar("gflocs","s",gfpar.gflocs);
+   mstpar("gfrange_tolerance","f",&gfpar.rtol);
+   }
+else
+   {
+   fprintf(stderr,"gftype= %s invalid option, exiting...\n",gfpar.gftype);
+   exit(-1);
+   }
+
+mstpar("gfpath","s",gfpath);
+mstpar("gfname","s",gfname);
+
+mstpar("maxnt","d",&maxnt);
+mstpar("mindt","f",&mindt);
+getpar("ntout","d",&ntout);
+getpar("dtout","f",&dtout);
+
+getpar("tstart","f",&tstart);
+getpar("rtimesfile","s",rtimesfile);
+getpar("slipfile","s",slipfile);
+getpar("trisefile","s",trisefile);
+
+getpar("seed","d",&seed);
+getpar("randtime","d",&randtime);
+if(randtime >= 1)
+   mstpar("perc_randtime","f",&perc_randtime);
+if(randtime >= 2)
+   getpar("delt","f",&delt);
+getpar("smooth_randt","d",&smooth_randt);
+getpar("gaus_randt","d",&gaus_randt);
+
+getpar("randslip","f",&randslip);
+
+getpar("randmech","d",&randmech);
+if(randmech)
+   {
+   mstpar("deg_randstk","f",&deg_randstk);
+   mstpar("deg_randdip","f",&deg_randdip);
+   mstpar("deg_randrak","f",&deg_randrak);
+   }
+
+getpar("tshift_timedomain","d",&tshift_timedomain);
+
+getpar("sname","s",sname);
+
+endpar();
+
+fprintf(stderr,"type= %s\n",rupmodtype);
+
+maxmech = 1;
+mechpar.nmech = 1;
+mechpar.flag[0] = U1FLAG;
+mechpar.flag[1] = 0;
+mechpar.flag[2] = 0;
+
+if(strcmp(rupmodtype,"BEROZA") == 0)
+   {
+   len2 = 0.5*len;
+
+   read_beroza(&brm,rupmodfile,&len2);
+
+   nsubstk = (brm.npstk) - 1;
+   nsubdip = (brm.npdip) - 1;
+
+   targetslip = slip_conv;
+   }
+else if(strcmp(rupmodtype,"OKUMURA") == 0)
+   {
+   read_okumura(&orm,rupmodfile,&len2);
+
+   nsubstk = orm.nstk;
+   nsubdip = orm.ndip;
+
+   len = orm.flen;
+   wid = orm.fwid;
+
+   targetslip = slip_conv;
+   }
+else if(strcmp(rupmodtype,"GENE") == 0)
+   {
+   read_gene(&grm,rupmodfile,&len2);
+
+   nsubstk = grm.nstk;
+   nsubdip = grm.ndip;
+
+   len = grm.flen;
+   wid = grm.fwid;
+
+   targetslip = slip_conv;
+   }
+else if(strcmp(rupmodtype,"ROB") == 0)
+   {
+   read_rob(&rrm,rupmodfile,&tsfac);
+
+/*   07/15/04
+     For now, just use the getpar values, eventually we should modify
+     in order to use the values read in from the slipmodel
+*/
+
+   rrm.elon = elon;
+   rrm.elat = elat;
+   rrm.stk = strike;
+   rrm.dip = dip;
+   rrm.dtop = dtop;
+   rrm.shyp = shypo;
+   rrm.dhyp = dhypo;
+
+   nsubstk = rrm.nstk;
+   nsubdip = rrm.ndip;
+
+   len = rrm.flen;
+   wid = rrm.fwid;
+
+   len2 = 0.5*len;
+
+   if(rupvel < 0.0)
+      {
+      read_velmodel(modfile,&vmod);
+      conv2vrup(&vmod,&rvmod,&dip,&dtop,&wid,&rvfrac,&shal_vrup);
+      }
+
+   targetslip = slip_conv;
+   }
+else if(strcmp(rupmodtype,"SRF") == 0)
+   {
+   maxmech = 3;
+
+   read_srf(&srf,rupmodfile,inbin);
+   prect_ptr = &srf.srf_prect;
+   prseg_ptr = prect_ptr->prectseg;
+   apnts_ptr = &srf.srf_apnts;
+   apval_ptr = apnts_ptr->apntvals;
+
+/*   05/19/05
+     For now, only use one segment from standard rupture model format;
+     specified with 'nseg'.
+*/
+
+   elon = prseg_ptr[nseg].elon;
+   elat = prseg_ptr[nseg].elat;
+   strike = prseg_ptr[nseg].stk;
+   dip = prseg_ptr[nseg].dip;
+   dtop = prseg_ptr[nseg].dtop;
+   shypo = prseg_ptr[nseg].shyp;
+   dhypo = prseg_ptr[nseg].dhyp;
+
+   nsubstk = prseg_ptr[nseg].nstk;
+   nsubdip = prseg_ptr[nseg].ndip;
+
+   len = prseg_ptr[nseg].flen;
+   wid = prseg_ptr[nseg].fwid;
+
+   /* reset POINTS pointer to appropriate segment */
+
+   apv_off = 0;
+   for(i=0;i<nseg;i++)
+      apv_off = apv_off + prseg_ptr[i].nstk*prseg_ptr[i].ndip;
+
+   apval_ptr = apval_ptr + apv_off;
+
+   len2 = 0.5*len;
+   targetslip = slip_conv;
+   }
+else
+   {
+   len2 = 0.5*len;
+
+   if(rupvel < 0.0)
+      {
+      read_velmodel(modfile,&vmod);
+      conv2vrup(&vmod,&rvmod,&dip,&dtop,&wid,&rvfrac,&shal_vrup);
+      }
+   }
+
+if(randtime)
+   {
+   fprintf(stderr,"**** Initiation time randomized\n");
+   fprintf(stderr,"          slow variation= +/-%.0f percent\n",100*perc_randtime);
+   fprintf(stderr,"          fast variation= +/-%g sec\n",delt);
+   }
+else
+   {
+   perc_randtime = 0.0;
+   delt = 0.0;
+   }
+
+if(randmech)
+   {
+   fprintf(stderr,"**** strike randomized by +/-%.0f degrees\n",deg_randstk);
+   fprintf(stderr,"        dip randomized by +/-%.0f degrees\n",deg_randdip);
+   fprintf(stderr,"       rake randomized by +/-%.0f degrees\n",deg_randrak);
+   }
+else
+   {
+   deg_randstk = 0.0;
+   deg_randdip = 0.0;
+   deg_randrak = 0.0;
+   }
+
+arg = strike*rperd;
+cosS = cos(arg);
+sinS = sin(arg);
+
+arg = dip*rperd;
+cosD = cos(arg);
+sinD = sin(arg);
+
+get_gfpars(&gfpar);
+
+if(latloncoords) /* calculate lat,lon to km conversions */
+   set_ne(&elon,&elat,&slon,&slat,&snorth,&seast);
+
+if(dtout < 0.0)
+   dtout = mindt;
+
+if(dtout < mindt)
+   maxnt = (maxnt*mindt/dtout);
+
+ntsum = 2;
+while(ntsum < 4*maxnt)
+   ntsum = ntsum*2;
+
+if(ntout < 0)
+   ntout = ntsum;
+
+gf = (float *) check_malloc (4*gfpar.nc*ntsum*sizeof(float));
+gfmech = (float *) check_malloc (maxmech*12*ntsum*sizeof(float));
+space = (float *) check_malloc (2*ntsum*sizeof(float));
+
+seis = (float *) check_malloc (3*ntout*sizeof(float));
+subseis = (float *) check_malloc (maxmech*3*ntout*sizeof(float));
+stf = (float *) check_malloc (ntout*sizeof(float));
+
+/* Calculate subfault responses */
+
+ds0 = len/nsubstk;
+dd0 = wid/nsubdip;
+
+dsf = ds0/nfinestk;
+ddf = dd0/nfinedip;
+
+area = (len*wid)/(nsubstk*nsubdip);
+sfac = targetslip*normf*area/(nfinestk*nfinedip);
+if(gfpar.flag3d == 0)  /* add addtnl factor to convert mu for 1d GFs */
+   sfac = sfac*normf;
+
+rwt = (float *) check_malloc (nfinestk*nfinedip*sizeof(float));
+
+if(randtime)
+   {
+   nn = nsubstk*nsubdip*nfinestk*nfinedip;
+   randt = (float *) check_malloc (nn*sizeof(float));
+
+   rand_init(randt,&perc_randtime,&seed,nsubstk,nsubdip,nfinestk,nfinedip,smooth_randt,gaus_randt);
+   }
+
+/* open output file */
+if(strcmp(rupmodtype,"NULL") == 0)
+   fdw = croptrfile(outfile);
+
+if(rtimesfile[0] != '\0')
+   {
+   write_ruptimes = 1;
+   fpwrt = fopfile(rtimesfile,"w");
+   }
+
+if(slipfile[0] != '\0')
+   {
+   write_slipvals = 1;
+   fpwsv = fopfile(slipfile,"w");
+   }
+
+if(trisefile[0] != '\0')
+   {
+   write_risetime = 1;
+   fpwtr = fopfile(trisefile,"w");
+   }
+
+zapit(seis,3*ntout);
+
+for(i=0;i<4;i++)
+   {
+   gfhead[i].id = -1;  /* initialize: -1 means none read yet */
+   gfhead[i].ir = -1;  /* initialize: -1 means none read yet */
+   }
+
+tmom = 0.0;
+for(i=0;i<nsubstk;i++)
+   {
+   for(j=0;j<nsubdip;j++)
+      {
+      sum = 0.0;
+      for(l=0;l<nfinedip*nfinestk;l++)
+	 {
+	 rwt[l] = randslip*sfrand(&seed);
+	 sum = sum + rwt[l];
+         }
+
+      sum = sum/(float)(nfinedip*nfinestk);
+      for(l=0;l<nfinedip*nfinestk;l++)
+	 rwt[l] = rwt[l] - sum;
+
+      zapit(subseis,maxmech*3*ntout);
+
+      ip0 = i + j*nsubstk;
+
+      for(k=0;k<nfinestk;k++)
+	 {
+	 x0 = i*ds0 + (k+0.5)*dsf - len2;
+
+	 for(l=0;l<nfinedip;l++)
+	    {
+	    dd = j*dd0 + (l+0.5)*ddf;
+	    y0 = dd*cosD;
+	    z0 = dtop + dd*sinD;
+
+	    kp = l + k*nfinedip;
+	    ip = kp + (j + i*nsubdip)*nfinestk*nfinedip;
+
+            if(strcmp(rupmodtype,"BEROZA") == 0)
+	       {
+               get_brmpars(&brm,i,j,&x0,&dd,&rt,&vslip);
+	       trise = brm.tdur[ip0];
+	       }
+            else if(strcmp(rupmodtype,"OKUMURA") == 0)
+	       {
+               get_ormpars(&orm,i,j,&x0,&dd,&rt,&vslip);
+	       trise = orm.rist[ip0];
+	       }
+            else if(strcmp(rupmodtype,"GENE") == 0)
+	       {
+               get_grmpars(&grm,i,j,&x0,&dd,&rt,&vslip,&rake);
+	       trise = (grm.nt[ip0]-1)*grm.tdel + grm.trise;
+	       }
+            else if(strcmp(rupmodtype,"ROB") == 0)
+	       {
+               get_rrmpars(&rrm,i,j,&x0,&dd,&rt,&vslip,&rake,&tsfac);
+	       trise = rrm.trise[ip0];
+
+	       if(rt < 0.0)
+		  {
+	          if(rupvel < 0.0)
+	             get_rupt(&rvmod,&htol,&dhypo,&dd,&shypo,&x0,&rayp,&rupt_rad,&rt);
+	          else
+	             rt = sqrt((shypo-x0)*(shypo-x0)+(dhypo-dd)*(dhypo-dd))/rupvel;
+		  rt = rt + tsfac;
+		  }
+
+               if(rt < 0.0)
+                  rt = 0.0;
+	       }
+            else if(strcmp(rupmodtype,"SRF") == 0)
+	       {
+               get_srfpars(&srf,apv_off,ip0,&rt,&vslip,&strike,&dip,&rake,&mechpar);
+	       trise = apval_ptr[ip0].dt*apval_ptr[ip0].nt1;
+
+/*
+   For case when nfinestk,nfinedip > 1 =>
+   calculate avg. Vr based on subfault center, then re-estimate Tinit 
+   when nfinestk = nfinedip = 1, x0c=x0, ddc=dd.
+*/
+	       x0c = (i+0.5)*ds0 - len2;
+	       ddc = (j+0.5)*dd0;
+	       avgvrup = sqrt((shypo-x0c)*(shypo-x0c)+(dhypo-ddc)*(dhypo-ddc))/rt;
+	       rt = sqrt((shypo-x0)*(shypo-x0)+(dhypo-dd)*(dhypo-dd))/avgvrup;
+	       }
+            else
+               {
+               vslip = 1.0;
+
+	       if(rupvel < 0.0)
+	          get_rupt(&rvmod,&htol,&dhypo,&dd,&shypo,&x0,&rayp,&rupt_rad,&rt);
+	       else
+	          rt = sqrt((shypo-x0)*(shypo-x0)+(dhypo-dd)*(dhypo-dd))/rupvel;
+               }
+
+	    if(randtime)
+	       rt = rt*(1.0 + randt[ip]);
+	    if(randtime == 2)
+	       {
+	       rt = rt + delt*sfrand(&seed);
+	       if(rt < 0.0)
+		  rt = 0.0;
+               }
+
+	    if(write_ruptimes == 1)
+	       fprintf(fpwrt,"%13.5e %13.5e %13.5e\n",x0+len2,dd,rt);
+
+            vslip = (1.0 + rwt[kp])*vslip;
+
+            if(write_slipvals == 1)
+               fprintf(fpwsv,"%13.5e %13.5e %13.5e\n",x0+len2,dd,slip_conv*vslip);
+
+	    if(write_risetime == 1)
+	       fprintf(fpwtr,"%13.5e %13.5e %13.5e\n",x0+len2,dd,trise);
+
+	    get_radazi(&azi,&rng,&deast,&dnorth,&x0,&y0,&cosS,&sinS,&seast,&snorth);
+	    find_4gf(gfpar,gfhead,&rng,&z0,&deast,&dnorth);
+
+	    fprintf(stderr,"i=%3d j=%3d k=%3d l=%3d ",i,j,k,l);
+	    fprintf(stderr," s=%7.2f d=%7.2f",x0,dd);
+	    fprintf(stderr," dn=%10.5f de=%10.5f",dnorth,deast);
+	    fprintf(stderr," a=%7.2f r=%7.2f\n",azi,rng);
+
+            read_4gf(gfpath,gfname,gf,ntsum,gfhead,gfpar,&maxgft,&maxnt,&dtout,space);
+
+	    if(randmech)
+	       {
+	       mechpar.stk = strike + deg_randstk*sfrand(&seed);
+	       mechpar.dip = dip + deg_randdip*sfrand(&seed);
+	       mechpar.rak = rake + deg_randrak*sfrand(&seed);
+	       }
+	    else
+	       {
+	       mechpar.stk = strike;
+	       mechpar.dip = dip;
+	       mechpar.rak = rake;
+	       }
+
+	    scale = sfac;
+	    mech_4gf(gfmech,gf,gfhead,gfpar,ntsum,mechpar,&azi,&scale);
+
+/* scale now contains the moment released by this point source */
+	    tmom = tmom + vslip*scale;
+
+	    sum_4gf(subseis,ntout,gfmech,gfhead,ntsum,maxnt,&rt,&maxgft,&tstart,tshift_timedomain,mechpar);
+	    }
+         }
+
+      z0 = dtop + (j+0.5)*dd0*sinD;
+
+      if(strcmp(rupmodtype,"BEROZA") == 0)
+	 beroza_stf(&brm,i,j,seis,subseis,stf,ntout,&dtout,&z0);
+      else if(strcmp(rupmodtype,"OKUMURA") == 0)
+	 okumura_stf(&orm,i,j,seis,subseis,stf,ntout,&dtout);
+      else if(strcmp(rupmodtype,"GENE") == 0)
+	 gene_stf(&grm,i,j,seis,subseis,stf,ntout,&dtout);
+      else if(strcmp(rupmodtype,"ROB") == 0)
+	 rob_stf(&rrm,i,j,seis,subseis,stf,ntout,&dtout,&z0);
+      else if(strcmp(rupmodtype,"SRF") == 0)
+	 srf_stf(&srf,apv_off,ip0,seis,subseis,stf,ntout,&dtout,mechpar);
+      else
+         {
+         sv = subseis;
+         sn = subseis + ntout;
+         se = subseis + 2*ntout;
+
+         fortran_rite(fdw,1,&ncomp,sizeof(int));
+
+         fortran_rite(fdw,2,&rng,sizeof(float),&tstart,sizeof(float));
+         fortran_rite(fdw,2,&ntout,sizeof(int),&dtout,sizeof(float));
+         fortran_rite(fdw,1,sn,ntout*sizeof(float));
+
+         fortran_rite(fdw,2,&rng,sizeof(float),&tstart,sizeof(float));
+         fortran_rite(fdw,2,&ntout,sizeof(int),&dtout,sizeof(float));
+         fortran_rite(fdw,1,se,ntout*sizeof(float));
+
+         fortran_rite(fdw,2,&rng,sizeof(float),&tstart,sizeof(float));
+         fortran_rite(fdw,2,&ntout,sizeof(int),&dtout,sizeof(float));
+         fortran_rite(fdw,1,sv,ntout*sizeof(float));
+         }
+      }
+   }
+
+if(strcmp(rupmodtype,"NULL") == 0)
+   close(fdw);
+else
+   {
+   sv = seis;
+   sn = seis + ntout;
+   se = seis + 2*ntout;
+
+   if(sname[0] == '\0')
+      {
+      strncpy(sname,stat,7);
+      sname[7] = '\0';
+      }
+
+   write_seis(outdir,stat,sname,"000",sn,&dtout,ntout,&tstart);
+   write_seis(outdir,stat,sname,"090",se,&dtout,ntout,&tstart);
+   write_seis(outdir,stat,sname,"ver",sv,&dtout,ntout,&tstart);
+
+   fprintf(stderr,"Total moment= %13.5e\n",tmom);
+   }
+
+if(write_ruptimes == 1)
+   {
+   fflush(fpwrt);
+   fclose(fpwrt);
+   }
+
+if(write_slipvals == 1)
+   {
+   fflush(fpwsv);
+   fclose(fpwsv);
+   }
+
+if(write_risetime == 1)
+   {
+   fflush(fpwtr);
+   fclose(fpwtr);
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim3d
===================================================================
(Binary files differ)


Property changes on: SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim3d
___________________________________________________________________
Added: svn:executable
   + *
Added: svn:mime-type
   + application/octet-stream

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim3d.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim3d.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/jbsim3d.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,327 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+struct sgtindex *get_sgtpars(struct sgtfileparams *sgtfpar,
+			     struct sgtmaster *sgtmast,
+			     struct sgtindex *sgtindx);
+
+int
+main(int ac,char **av)
+{
+FILE *fopfile(), *fpr;
+struct sgtfileparams sgtfilepar, sgtextract;
+struct sgtparams *sgtparms;
+struct sgtmaster sgtmast;
+struct sgtindex *sgtindx;
+struct sgtindex eqindx, statindx;
+struct geoprojection geop;
+float *gfmech;
+float *stf, *seis, *subseis, *se, *sn, *sv;
+float rt, scale, slon, slat;
+float elon, elat, edep;
+float vslip, *space;
+float z0, strike, dip, rake;
+int fdw, ip, maxmech, nstf, ntsum, maxnt, ig;
+float mindt, maxdelta, fweight;
+
+struct sgtheader *sgthead;
+float *sgtbuf;
+
+char string[256], outfile[128];
+char rupmodfile[128], outdir[256], sgtdir[256], stat[64], sname[8];
+
+struct standrupformat srf;
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+struct mechparam mechpar;
+
+long long *indx_master;
+int nm, non_exact;
+
+int extract_sgt = 0;
+
+float tmom = 0.0;
+float dtout = -1.0;
+float slip_conv = 1.0;  /* input slip in cm on each subfault */
+float tstart = 0.0;
+
+float sdep = 0.0;
+
+int ntout = -99;
+int apv_off = 0;
+int inbin = 0;
+
+int intmem = 0;
+int memlen;
+
+int ptol;
+int print_tol = 25;
+
+int output_binary = 0;
+int merge_output = 0;
+char seis_file[256];
+
+sname[0] = '\0';
+
+sgtfilepar.xfile[0] = '\0';
+sgtfilepar.yfile[0] = '\0';
+sgtfilepar.zfile[0] = '\0';
+
+sgtfilepar.xfdr = -1;
+sgtfilepar.yfdr = -1;
+sgtfilepar.zfdr = -1;
+
+sgtextract.xfile[0] = '\0';
+sgtextract.yfile[0] = '\0';
+sgtextract.zfile[0] = '\0';
+
+sgtextract.xfdr = -1;
+sgtextract.yfdr = -1;
+sgtextract.zfdr = -1;
+
+sprintf(outdir,".");
+sprintf(sgtdir,".");
+
+setpar(ac, av);
+
+mstpar("slat","f",&slat);
+mstpar("slon","f",&slon);
+getpar("outdir","s",outdir);
+mstpar("stat","s",stat);
+
+mstpar("rupmodfile","s",rupmodfile);
+getpar("slip_conv","f",&slip_conv);
+getpar("inbin","d",&inbin);
+
+getpar("sgt_xfile","s",sgtfilepar.xfile);
+getpar("sgt_yfile","s",sgtfilepar.yfile);
+getpar("sgt_zfile","s",sgtfilepar.zfile);
+
+getpar("extract_sgt","d",&extract_sgt);
+
+getpar("outputBinary","d",&output_binary);
+ if (output_binary==1) { //if output as binary, merge the output files
+  merge_output = 1;
+}
+getpar("mergeOutput","d",&merge_output);
+if (extract_sgt==0) {
+  mstpar("seis_file","s",seis_file);
+}
+
+if(sgtfilepar.xfile[0] == '\0' && sgtfilepar.yfile[0] == '\0' && sgtfilepar.zfile[0] == '\0')
+   {
+   fprintf(stderr,"*** need to specify at least one of sgt_xfile, sgt_yfile, or sgt_zfile; exiting ...\n");
+   exit(-1);
+   }
+
+if(extract_sgt==1)
+   {
+   getpar("sgtdir","s",sgtdir);
+
+   if(sgtfilepar.xfile[0] != '\0')
+      mstpar("extract_sgt_xfile","s",sgtextract.xfile);
+   if(sgtfilepar.yfile[0] != '\0')
+      mstpar("extract_sgt_yfile","s",sgtextract.yfile);
+   if(sgtfilepar.zfile[0] != '\0')
+      mstpar("extract_sgt_zfile","s",sgtextract.zfile);
+   }
+
+getpar("ntout","d",&ntout);
+getpar("dtout","f",&dtout);
+getpar("tstart","f",&tstart);
+getpar("sname","s",sname);
+
+endpar();
+
+read_srf(&srf,rupmodfile,inbin);
+prect_ptr = &srf.srf_prect;
+prseg_ptr = prect_ptr->prectseg;
+apnts_ptr = &srf.srf_apnts;
+apval_ptr = apnts_ptr->apntvals;
+
+apv_off = 0;
+
+sgtindx = get_sgtpars(&sgtfilepar,&sgtmast,sgtindx);
+set_geoproj(&sgtmast,&geop);
+
+eqindx.h = sgtindx[0].h;
+statindx.h = sgtindx[0].h;
+
+get_indx(&slon,&slat,&sdep,&statindx,&geop);
+
+/* find sgt locations (indx) for all fault points */
+
+fprintf(stdout,"Find SGTs for this rupture\n");
+
+sgtparms = (struct sgtparams *) check_malloc ((srf.srf_apnts.np)*sizeof(struct sgtparams));
+
+ptol = print_tol;
+maxdelta = 0.0;
+fweight = 1.0;
+non_exact = 0;
+for(ip=0;ip<srf.srf_apnts.np;ip++)
+   {
+   elon = apval_ptr[ip].lon;
+   elat = apval_ptr[ip].lat;
+   edep = apval_ptr[ip].dep;
+   get_indx(&elon,&elat,&edep,&eqindx,&geop);
+
+   find_sgt(&sgtparms[ip],&sgtmast,sgtindx,&eqindx,&statindx,&maxdelta,&fweight);
+
+   if (sgtparms[ip].nsgt != 1)
+	 non_exact++;
+
+   if((float)(100.0*(float)(ip+1)/(float)(srf.srf_apnts.np)) >= ptol)
+      {
+      fprintf(stdout," %3d percent done (%d of %d)\n",ptol,ip,srf.srf_apnts.np);
+      ptol = ptol + print_tol;
+      }
+   }
+
+/* find unique and sorted master list of locations (indx) */
+
+indx_master = (long long *) check_malloc (4*(srf.srf_apnts.np)*sizeof(long long));
+get_master_list(sgtparms,srf.srf_apnts.np,indx_master,&nm);
+indx_master = (long long *) check_realloc (indx_master,nm*sizeof(long long));
+
+fprintf(stdout,"nm= %d non_exact= %d\n",nm,non_exact);
+fprintf(stdout,"max_mindelta= %f weight= %f\n",sgtindx[0].h*sqrt(maxdelta),fweight);
+
+if(extract_sgt==1)
+   {
+   fprintf(stdout,"Extracting SGTs for this rupture\n");
+
+   sgt_subset(&sgtfilepar,&sgtextract,&sgtmast,sgtindx,nm,indx_master,sgtdir);
+   exit(0);
+   }
+
+fprintf(stdout,"Constructing synthetic this rupture\n");
+
+/* try to read all SGTs into memory */
+
+memlen = sizeof(struct sgtmaster) + (sgtmast.globnp)*(sizeof(struct sgtindex) + sizeof(struct sgtheader) + 18*(sgtmast.nt)*sizeof(float));
+
+fprintf(stdout,"Total memory for SGTs= %.2f Mb\n",memlen*1.0e-06);
+
+sgthead = (struct sgtheader *) check_malloc ((sgtmast.globnp)*sizeof(struct sgtheader));
+sgtbuf = (float *) check_malloc (18*(sgtmast.globnp)*(sgtmast.nt)*sizeof(float));
+
+read_sgt(&sgtfilepar,&sgtmast,sgtindx,sgthead,sgtbuf);
+
+maxnt = sgthead[0].nt;
+mindt = sgthead[0].dt;
+
+if(dtout < 0.0)
+   dtout = mindt;
+
+if(dtout < mindt)
+   maxnt = (maxnt*mindt/dtout);
+
+ntsum = 2;
+while(ntsum < 4*maxnt)
+   ntsum = ntsum*2;
+
+if(ntout < 0)
+   ntout = ntsum;
+
+maxmech = 3;
+mechpar.nmech = 1;
+mechpar.flag[0] = U1FLAG;
+mechpar.flag[1] = 0;
+mechpar.flag[2] = 0;
+
+gfmech = (float *) check_malloc (maxmech*12*ntsum*sizeof(float));
+space = (float *) check_malloc (2*ntsum*sizeof(float));
+
+seis = (float *) check_malloc (3*ntout*sizeof(float));
+subseis = (float *) check_malloc (maxmech*3*ntout*sizeof(float));
+stf = (float *) check_malloc (ntout*sizeof(float));
+
+zapit(seis,3*ntout);
+
+ptol = print_tol;
+tmom = 0.0;
+for(ip=0;ip<srf.srf_apnts.np;ip++)
+   {
+   zapit(subseis,maxmech*3*ntout);
+
+   get_srfpars(&srf,apv_off,ip,&rt,&vslip,&mechpar.stk,&mechpar.dip,&mechpar.rak,&mechpar);
+   scale = slip_conv*apval_ptr[ip].area;
+
+   mech_sgt(gfmech,sgtbuf,sgthead,&sgtparms[ip],ntsum,mechpar,&scale);
+   tmom = tmom + vslip*scale;
+
+   sum_sgt(subseis,ntout,gfmech,&sgtparms[ip],sgthead,ntsum,&rt,&tstart,mechpar);
+   srf_stf(&srf,apv_off,ip,seis,subseis,stf,ntout,&dtout,mechpar,space);
+
+   if((float)(100.0*(float)(ip+1)/(float)(srf.srf_apnts.np)) >= ptol)
+      {
+      fprintf(stdout," %3d percent done (%d of %d)\n",ptol,ip,srf.srf_apnts.np);
+      ptol = ptol + print_tol;
+      }
+   }
+
+sv = seis;
+sn = seis + ntout;
+se = seis + 2*ntout;
+
+if(sname[0] == '\0') {
+   strncpy(sname,stat,7);
+   sname[7] = '\0';
+}
+
+char* last_slash = strrchr(seis_file, '/');
+if (last_slash!=NULL) { //means there was a slash in the filename, might need to create a path
+	char* path = malloc(sizeof(char)*strlen(seis_file));
+	if (path==NULL) {
+		printf("Error on malloc, exiting.\n");
+		exit(2);
+	}
+	strncpy(path, seis_file, last_slash-seis_file);
+	strcat(path, "\0");
+	makedir(path);
+}
+
+if (merge_output==0) {
+  if (sgtfilepar.xfile[0]!='\0') {
+	write_seis(seis_file,sname,"000",sn,&dtout,ntout,&tstart,output_binary);
+  }
+  if (sgtfilepar.yfile[0]!='\0') {
+	write_seis(seis_file,sname,"090",se,&dtout,ntout,&tstart,output_binary);
+  }
+  if (sgtfilepar.zfile[0]!='\0') {
+	write_seis(seis_file,sname,"ver",sv,&dtout,ntout,&tstart,output_binary);
+  }
+} else { //merging output
+  if (sgtfilepar.xfile[0]!='\0') {
+	if (sgtfilepar.yfile[0]!='\0') {
+	  if (sgtfilepar.zfile[0]!='\0') { //x,y,z
+		write_seis(seis_file,sname,"grm",sn,&dtout,3*ntout,&tstart,output_binary);
+	  } else { //x,y
+		write_seis(seis_file,sname,"grm",sn,&dtout,2*ntout,&tstart,output_binary);
+	  }
+	}
+	else if (sgtfilepar.zfile[0]!='\0') { //x,z
+	  printf("Can't output merged X and Z components.\n");
+	  exit(2);
+	} else { //x
+	  	write_seis(seis_file,sname,"grm",sn,&dtout,ntout,&tstart,output_binary);
+	}
+  } else if (sgtfilepar.yfile[0]!='\0') {
+	if (sgtfilepar.zfile[0]!='\0') { //y,z
+	  write_seis(seis_file,sname,"grm",se,&dtout,2*ntout,&tstart,output_binary);
+	} else { //y
+	  write_seis(seis_file,sname,"grm",se,&dtout,ntout,&tstart,output_binary);
+	}
+  } else if (sgtfilepar.zfile[0]!='\0') { //z
+	write_seis(seis_file,sname,"grm",sv,&dtout,ntout,&tstart,output_binary);
+  }
+}
+
+fprintf(stdout,"Total moment= %13.5e\n",tmom);
+exit(0);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/makefile
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/makefile	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/makefile	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,55 @@
+TARGETS = jbsim3d
+HEADS = include.h structure.h function.h
+OBJS = iofunc.o ruptime.o misc_subs.o greenfunc.o \
+       beroza_rupm.o okumura_rupm.o gene_rupm.o rob_rupm.o srf_rupm.o \
+       fourg.o stf_subs.o sgt3d_subs.o geoproj_subs.o
+
+SRF_OBJS = ../SlipModel/StandRupFormat/srf_subs.o
+
+LF_FLAGS = -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
+
+GETPAR = ../../Getpar/getpar/lib
+LDLIBS = ${GETPAR}/libget.a -lm
+
+UFLAGS = -O
+LDFLAGS = -p
+LDFLAGS =
+
+include ../../Compilers.mk
+
+CFLAGS = -O ${LF_FLAGS} ${LDFLAGS}
+FFLAGS = ${UFLAGS}
+
+CC = $(MY_CC)
+FC = $(MY_FC)
+
+##### make options
+
+all: $(TARGETS)
+	for TARGET in $(TARGETS); do \
+		rm -f ../bin/$$TARGET ; \
+		cp $$TARGET ../bin ; \
+	done
+
+jbsim032906 : jbsim032906.o ${OBJS} ${SRF_OBJS}
+	${CC} ${LDFLAGS} -o jbsim032906 jbsim032906.o ${OBJS} ${LDLIBS} ${SRF_OBJS}
+
+ray_stimes : ray_stimes.o ${OBJS}
+	${CC} ${LDFLAGS} -o ray_stimes ray_stimes.o ${OBJS} ${LDLIBS}
+
+jbsim3d : jbsim3d.o ${OBJS} ${SRF_OBJS}
+	${CC} ${LDFLAGS} -o jbsim3d jbsim3d.o ${OBJS} ${SRF_OBJS} ${LDLIBS}
+
+jbsim : jbsim.o ${OBJS} ${SRF_OBJS}
+	${CC} ${LDFLAGS} -o jbsim jbsim.o ${OBJS} ${LDLIBS} ${SRF_OBJS}
+
+gen_gflist : gen_gflist.o ${OBJS} ${SRF_OBJS}
+	${CC} ${LDFLAGS} -o gen_gflist gen_gflist.o ${OBJS} ${LDLIBS} ${SRF_OBJS}
+
+bailey2srf : bailey2srf.o ${OBJS}
+	${CC} ${LDFLAGS} -o bailey2srf bailey2srf.o ${OBJS} ${LDLIBS}
+
+${OBJS} : ${HEADS}
+
+clean :
+	-rm -f $(OBJS) $(TARGETS) *.o

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/misc_subs.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/misc_subs.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/misc_subs.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,734 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+void get_radazi(float *az,float *rg,float *de,float *dn,float *x,float *y,float *cs,float *ss,float *e,float *n)
+{
+float fe, fn;
+
+fe = (*y)*(*cs) + (*x)*(*ss);
+fn = -(*y)*(*ss) + (*x)*(*cs);
+
+*de = *e - fe;
+*dn = *n - fn;
+
+*az = atan2((*de),(*dn));
+*rg = sqrt((*de)*(*de) + (*dn)*(*dn));
+}
+
+void get_master_list(struct sgtparams *sgtp,int np,long long *mindx,int *nm)
+{
+int ip, ig, im, ifnd, sflag, mcnt;
+long long ll_int;
+
+mcnt = 0;
+
+for(ip=0;ip<np;ip++)
+   {
+   for(ig=0;ig<sgtp[ip].nsgt;ig++)
+      {
+      ifnd = 0;
+      for(im=0;im<mcnt;im++)
+         {
+	 if(sgtp[ip].indx[ig] == mindx[im])
+	    {
+	    ifnd = 1;
+	    break;
+	    }
+	 }
+
+      if(ifnd == 0)
+         {
+         mindx[mcnt] = sgtp[ip].indx[ig];
+         mcnt++;
+         }
+      }
+   }
+
+sflag = 1;
+while(sflag)
+   {
+   sflag = 0;
+   for(im=0;im<mcnt-1;im++)
+      {
+      if(mindx[im] > mindx[im+1])
+         {
+         ll_int = mindx[im+1]; mindx[im+1] = mindx[im]; mindx[im] = ll_int;
+         sflag = 1;
+         }
+      }
+   }
+
+for(ip=0;ip<np;ip++)
+   {
+   for(ig=0;ig<sgtp[ip].nsgt;ig++)
+      {
+      for(im=0;im<mcnt;im++)
+         {
+	 if(sgtp[ip].indx[ig] == mindx[im])
+	    {
+	    sgtp[ip].master_ip[ig] = im;
+	    break;
+	    }
+	 }
+      }
+   }
+
+*nm = mcnt;
+}
+
+void get_indx(float *lon,float *lat,float *dep,struct sgtindex *indx,struct geoprojection *gp)
+{
+float xs, ys, xr, yr;
+double invh;
+
+invh = 1.0/(double)(indx->h);
+
+if(gp->geoproj == 0)
+   {
+   xs = ((*lon) - gp->modellon)*gp->kmlon;
+   ys = (gp->modellat - (*lat))*gp->kmlat;
+
+   xr = xs*gp->cosR + ys*gp->sinR - gp->xshift;
+   yr = -xs*gp->sinR + ys*gp->cosR - gp->yshift;
+   }
+else if(gp->geoproj == 1)
+   gcproj(&xr,&yr,lon,lat,&gp->erad,&gp->g0,&gp->b0,gp->amat,gp->ainv,1);
+
+indx->xsgt = (int)((double)(xr)*invh + 0.5);
+indx->ysgt = (int)((double)(yr)*invh + 0.5);
+indx->zsgt = (int)((double)((*dep))*invh + 1.5);
+indx->indx = (long long)(indx->xsgt)*(long long)(100000000) + (long long)(indx->ysgt)*(long long)(10000) + (long long)(indx->zsgt);
+}
+
+void get_ard_srf(struct standrupformat *srf,int off,int ip,float *az,float *rg,float *z0,float *de,float *dn,float *slon,float *slat,struct geoprojection *gp)
+{
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+float elon, elat, xs, ys;
+
+prect_ptr = &(srf->srf_prect);
+prseg_ptr = prect_ptr->prectseg;
+apnts_ptr = &(srf->srf_apnts);
+apval_ptr = apnts_ptr->apntvals + off;
+
+elon = apval_ptr[ip].lon;
+elat = apval_ptr[ip].lat;
+
+if(gp->geoproj == 0)
+   set_ne(&elon,&elat,slon,slat,dn,de);
+else if(gp->geoproj == 1)
+   {
+   gcproj(&xs,&ys,&elon,&elat,&gp->erad,&gp->g0,&gp->b0,gp->amat,gp->ainv,1);
+   *dn = -(gp->xshift) - xs;
+   *de = -(gp->yshift) - ys;
+   }
+
+*az = atan2((*de),(*dn));
+*rg = sqrt((*de)*(*de) + (*dn)*(*dn));
+*z0 = apval_ptr[ip].dep;
+}
+
+resample(s,nt,dt,isamp,ntpad,ntrsmp,newdt,p)
+float *s, *p, *dt, *newdt;
+int nt, isamp, ntpad, ntrsmp;
+{
+float df, f, f0, fl, fl2, fac;
+int i, j;
+
+int ord = 4;
+float one = 1.0;
+
+int minus = -1;
+int plus = 1;
+
+taper_norm(s,dt,nt);
+zapit(s+nt,(ntpad)-(nt));
+
+for(i=ntpad-1;i>=0;i--)
+   {
+   s[2*i] = s[i];
+   s[2*i + 1] = 0.0;
+   }
+
+fourg_(s,&ntpad,&minus,p);
+
+if(isamp > 0)
+   zapit(s+ntpad,2*ntrsmp-ntpad);
+else if(isamp < 0)
+   {
+   if(ord)  /* lowpass at 80 % of new Nyquist */
+      {
+      f0 = 0.8/(2.0*(*newdt));
+      df = 1.0/(ntrsmp*(*newdt));
+      for(i=1;i<ntrsmp/2;i++)
+         {
+         f = i*df;
+
+         fl = f/f0;
+         fl2 = fl*fl;
+         fl = fl2;
+         for(j=1;j<ord;j++)
+            fl = fl*fl2;
+
+         fac = one/(one + fl);
+
+         s[2*i] = fac*s[2*i];
+         s[2*i + 1] = fac*s[2*i + 1];
+         }
+      }
+
+   s[ntrsmp] = s[ntrsmp+1] = 0.0; /* zero nyquist */
+   }
+
+for(i=1;i<ntrsmp/2;i++)  /* replicate with complex-conjugate */
+   {
+   s[2*(ntrsmp-i)] = s[2*i];
+   s[2*(ntrsmp-i) + 1] = -s[2*i + 1];
+   }
+
+fourg_(s,&ntrsmp,&plus,p);
+
+for(i=0;i<ntrsmp;i++)
+   s[i] = s[2*i];
+
+norm(s,newdt,ntrsmp);
+}
+
+zapit(s,n)
+float *s;
+int n;
+{
+while(n--)
+   {
+   s[0] = 0.0;
+   s++;
+   }
+}
+
+taper_norm(g,dt,nt)
+float *g, *dt;
+int nt;
+{
+float fac, df, arg;
+int i;
+int ntap;
+
+ntap = nt*TAP_PERC;
+
+for(i=0;i<nt-ntap;i++)
+   g[i] = g[i]*(*dt);
+
+df = 3.14159/(float)(ntap);
+for(i=nt-ntap;i<nt;i++)
+   {
+   arg = (i-(nt-(ntap+1)))*df;
+   fac = (*dt)*0.5*(1.0 + cos(arg));
+   g[i] = g[i]*fac;
+   }
+}
+
+norm(g,dt,nt)
+float *g, *dt;
+int nt;
+{
+float fac;
+
+fac = 1.0/((*dt)*nt);
+while(nt--)
+   {
+   g[0] = g[0]*fac;
+   g++;
+   }
+}
+
+float sin_table[] =
+   {
+	1.0000000e+00,	/* sin(pi/2) */
+	7.0710678e-01,	/* sin(pi/4) */
+	3.8268343e-01,	/* sin(pi/8) */
+	1.9509032e-01,	/* sin(pi/16) */
+	9.8017140e-02,	/* sin(pi/32) */
+	4.9067674e-02,	/* sin(pi/64) */
+	2.4541228e-02,	/* sin(pi/128) */
+	1.2271538e-02,	/* sin(pi/256) */
+	6.1358846e-03,	/* sin(pi/512) */
+	3.0679568e-03,	/* sin(pi/1024) */
+	1.5339802e-03,	/* sin(pi/2048) */
+	7.6699032e-04,	/* sin(pi/4096) */
+	3.8349519e-04,	/* sin(pi/8192) */
+	1.9174760e-04,	/* sin(pi/16384) */
+	9.5873799e-05, /* sin(pi/32768) */
+	4.7936899e-05, /* sin(pi/65536) */
+	2.3968499e-05, /* sin(pi/131072) */
+	1.1984224e-05, /* sin(pi/262144) */
+	5.9921125e-06, /* sin(pi/524288) */
+	2.9960562e-06, /* sin(pi/1048576) */
+	1.4980281e-06  /* sin(pi/2097152) */
+   };
+
+forfft(x,n,isign)
+register struct complex *x;
+int n, isign;
+   {
+	register struct complex *px, *rx;
+	float cn, sn, cd, sd, arg;
+	float are, aim, bre, bim, real, imag;
+	float *psintab;
+	float half = 0.5;
+	extern float sin_table[];
+	int k;
+
+	cfft_r(x,n/2,isign);
+
+	/* do DC and Nyquist */
+	real= x[0].re;
+	imag= x[0].im;
+	x[0].re= real + imag;
+	x[0].im= real - imag;
+
+	/* set up for sine recurrsion */
+	psintab= sin_table;
+	for(k=4; k<n; k <<= 1) psintab++;
+	sd= *psintab++;
+	real= *psintab;
+	cd= 2.0 * real * real;
+
+	sn= 0.0;
+	cn= 1.0;
+	if(isign < 0) sd= -sd;
+	px= x + 1;
+	rx= x + n/2 -1;
+	while( px <= rx )
+	   {
+		real = cd*cn + sd*sn;
+		imag = sd*cn - cd*sn;
+		cn -= real;
+		sn += imag;
+
+		are= half*(px->re + rx->re);
+		aim= half*(px->im - rx->im);
+		bre= half*(px->im + rx->im);
+		bim= half*(rx->re - px->re);
+
+		real= bre*cn - bim*sn;
+		imag= bre*sn + bim*cn;
+
+		px->re = are + real;
+		px->im = aim + imag;
+		rx->re = are - real;
+		rx->im = imag - aim;
+
+		px++;
+		rx--;
+	   }
+	if(abs(isign) > 1)
+	   {
+		x[n/2].re= x[0].im;
+		x[0].im= x[n/2].im = 0.0;
+	   }
+   }
+
+invfft(x,n,isign)
+register struct complex *x;
+int n, isign;
+   {
+	register struct complex *px, *rx;
+	float cn, sn, cd, sd;
+	float are, aim, bre, bim, real, imag;
+	float *psintab;
+	extern float sin_table[];
+	int k;
+
+	if(abs(isign) > 1) x[0].im= x[n/2].re;
+
+	/* do DC and Nyquist */
+	real= x[0].re;
+	imag= x[0].im;
+	x[0].re= real + imag;
+	x[0].im= real - imag;
+
+	/* set up for sine recurrsion */
+	psintab= sin_table;
+	for(k=4; k<n; k <<= 1) psintab++;
+	sd= *psintab++;
+	real= *psintab;
+	cd= 2.0 * real * real;
+
+	sn= 0.0;
+	cn= 1.0;
+	if(isign < 0) sd= -sd;
+	px= x + 1;
+	rx= x + n/2 -1;
+	while( px <= rx )
+	   {
+		real = cd*cn + sd*sn;
+		imag = sd*cn - cd*sn;
+		cn -= real;
+		sn += imag;
+
+		are= (px->re + rx->re);
+		aim= (px->im - rx->im);
+		bre= (px->re - rx->re);
+		bim= (px->im + rx->im);
+
+		real= bre*cn - bim*sn;
+		imag= bre*sn + bim*cn;
+
+		px->re = are - imag;
+		px->im = aim + real;
+		rx->re = are + imag;
+		rx->im = real - aim;
+
+		px++;
+		rx--;
+	   }
+	cfft_r(x,n/2,isign);
+   }
+
+cfft_r(x,n,isign)
+struct complex *x;
+int n,isign;
+   {
+	register struct complex *px, *qx, *rx;
+	struct complex *limit, *qlimit, dtemp;
+	float cn, sn, cd, sd, temp, real, imag;
+	int m, j, istep;
+	float *psintab;
+	extern float sin_table[];
+
+	limit= x + n;
+	j= 0;
+	for(px=x; px<limit; px++)
+	   {
+		if(px < (qx= x+j))
+		   {	dtemp= *qx; *qx= *px; *px= dtemp;	}
+		m = n>>1;
+		while( m>=1 && j>=m )
+		   { j-= m; m>>= 1;    }
+		j+= m;
+	   }
+	rx= x+1;
+	for(px=x; px<limit; px+= 2, rx+= 2)
+	   {
+		temp= rx->re;
+		rx->re= px->re -temp;
+		px->re += temp;
+		temp= rx->im;
+		rx->im= px->im -temp;
+		px->im += temp;
+	   }
+	j=2;
+	psintab= sin_table;
+	while( j < n )
+	   {
+		istep= j<<1;
+		sd= *psintab++;
+		temp= *psintab;
+		cd= 2.0 * temp * temp;
+		cn= 1.0;
+		sn= 0.0;
+		if( isign < 0 ) sd= -sd;
+		qlimit= x+j;
+		for(qx=x; qx< qlimit; qx++)
+		   {
+			for(px=qx; px<limit; px+= istep)
+			   {
+				rx= px + j;
+				real= cn * rx->re - sn * rx->im;
+				imag= sn * rx->re + cn * rx->im;
+				rx->re = px->re - real;
+				rx->im = px->im - imag;
+				px->re += real;
+				px->im += imag;
+			   }
+			temp= cd * cn + sd * sn;
+			sn += (sd * cn - cd * sn);
+			cn -= temp;
+		   }
+		j= istep;
+	   }
+	return;
+   }
+
+double gaus_rand(float *sigma,float *mean,int *seed)
+{
+double r = 0.0;
+double six = 6.0;
+double one = 1.0;
+double half = 0.5;
+int i;
+
+for(i=0;i<12;i++)
+   r = r + half*(one + sfrand(seed));
+
+return((double)((r - six)*(*sigma) + *mean));
+}
+
+/* sfrand() returns a uniform distribution of random numbers
+ * in the range -1.0 -> 1.0.
+ */
+double sfrand(int *seed)
+{
+*seed = ((*seed) * 1103515245 + 12345) & 0x7fffffff;
+return((double)(*seed)/1073741824.0 - 1.0);
+}
+
+void rand_init(float *rt,float *pct,int *seed,int ns,int nd,int nfs,int nfd,int nsmth,int gaus)
+{
+float *xt, maxr, gmean;
+int i, j, k, l, ip;
+int ix0, ix1, ix2, ix3, ix4;
+
+xt = (float *) check_malloc (ns*nd*nfs*nfd*sizeof(float));
+
+if(gaus)
+   {
+   gmean = 0.0;
+   maxr = 0.0;
+   for(i=0;i<ns*nd*nfs*nfd;i++)
+      {
+      rt[i] = gaus_rand(pct,&gmean,seed);
+
+      if(rt[i] > maxr)
+         maxr = rt[i];
+      if(-rt[i] > maxr)
+         maxr = -rt[i];
+      }
+
+   maxr = *pct/maxr;
+   for(i=0;i<ns*nd*nfs*nfd;i++)
+      rt[i] = maxr*rt[i];
+   }
+else
+   {
+for(i=0;i<ns*nd*nfs*nfd;i++)
+   xt[i] = sfrand(seed);
+
+while(nsmth--)
+   {
+   ix0 = 0;
+
+   ix2 = ix0 + 1;
+   ix4 = ix0 + nd*nfd;
+
+   rt[ix0] = 0.2000*(xt[ix0] + xt[ix2] + xt[ix4]);
+
+   for(j=1;j<nd*nfd-1;j++)
+      {
+      ix0 = j;
+
+      ix1 = ix0 - 1;
+      ix2 = ix0 + 1;
+      ix4 = ix0 + nd*nfd;
+
+      rt[ix0] = 0.20*(xt[ix0] + xt[ix1] + xt[ix2] + xt[ix4]);
+      }
+
+   ix0 = nd*nfd - 1;
+
+   ix1 = ix0 - 1;
+   ix4 = ix0 + nd*nfd;
+
+   rt[ix0] = 0.2000*(xt[ix0] + xt[ix1] + xt[ix4]);
+
+   for(i=1;i<ns*nfs-1;i++)
+      {
+      ix0 = i*nd*nfd;
+
+      ix2 = ix0 + 1;
+      ix3 = ix0 - nd*nfd;
+      ix4 = ix0 + nd*nfd;
+
+      rt[ix0] = 0.20*(xt[ix0] + xt[ix2] + xt[ix3] + xt[ix4]);
+
+      for(j=1;j<nd*nfd-1;j++)
+	 {
+	 ix0 = j + i*nd*nfd;
+
+	 ix1 = ix0 - 1;
+	 ix2 = ix0 + 1;
+	 ix3 = ix0 - nd*nfd;
+	 ix4 = ix0 + nd*nfd;
+
+         rt[ix0] = 0.2*(xt[ix0] + xt[ix1] + xt[ix2] + xt[ix3] + xt[ix4]);
+	 }
+
+      ix0 = nd*nfd - 1 + i*nd*nfd;
+
+      ix1 = ix0 - 1;
+      ix3 = ix0 - nd*nfd;
+      ix4 = ix0 + nd*nfd;
+
+      rt[ix0] = 0.20*(xt[ix0] + xt[ix1] + xt[ix3] + xt[ix4]);
+      }
+
+   ix0 = (ns*nfs-1)*nd*nfd;
+
+   ix2 = ix0 + 1;
+   ix3 = ix0 - nd*nfd;
+
+   rt[ix0] = 0.2000*(xt[ix0] + xt[ix2] + xt[ix3]);
+
+   for(j=1;j<nd*nfd-1;j++)
+      {
+      ix0 = j + (ns*nfs-1)*nd*nfd;
+
+      ix1 = ix0 - 1;
+      ix2 = ix0 + 1;
+      ix3 = ix0 - nd*nfd;
+
+      rt[ix0] = 0.20*(xt[ix0] + xt[ix1] + xt[ix2] + xt[ix3]);
+      }
+
+   ix0 = ns*nfs*nd*nfd - 1;
+
+   ix1 = ix0 - 1;
+   ix3 = ix0 - nd*nfd;
+
+   rt[ix0] = 0.2000*(xt[ix0] + xt[ix1] + xt[ix3]);
+
+   for(i=0;i<ns*nfs;i++)
+      {
+      for(j=0;j<nd*nfd;j++)
+         {
+	 ix0 = j + i*nd*nfd;
+         xt[ix0] = rt[ix0];
+	 }
+      }
+   }
+
+maxr = 0.0;
+for(i=0;i<ns;i++)
+   {
+   for(k=0;k<nfs;k++)
+      {
+      for(j=0;j<nd;j++)
+         {
+         for(l=0;l<nfd;l++)
+	    {
+	    ip =  l + k*nfd + (j + i*nd)*nfs*nfd;
+	    ix0 = l + j*nfd + (k + i*nfs)*nd*nfd;
+
+            rt[ip] = xt[ix0];
+
+	    if(rt[ip] > maxr)
+	       maxr = rt[ip];
+	    if(-rt[ip] > maxr)
+	       maxr = -rt[ip];
+            }
+         }
+      }
+   }
+fprintf(stderr,"maxr=%13.5f\n",maxr);
+
+maxr = (*pct)/maxr;
+for(i=0;i<ns;i++)
+   {
+   for(j=0;j<nd;j++)
+      {
+      for(k=0;k<nfs;k++)
+	 {
+	 for(l=0;l<nfd;l++)
+	    {
+	    ip = l + k*nfd + (j + i*nd)*nfs*nfd;
+            rt[ip] = rt[ip]*maxr;
+
+fprintf(stderr,"rt=%13.5f\n",rt[ip]);
+            }
+         }
+      }
+   }
+   }
+
+free(xt);
+}
+
+void set_ne(float *elon,float *elat,float *slon,float *slat,float *sn,float *se)
+{
+float kperd_n, kperd_e;
+double e2, den, g2, lat0;
+float cosA, sinA;
+
+double rperd = 0.017453293;
+double radius = 6378.139;
+double f = 298.256;
+
+f = 1.0/f;
+e2 = 2.0*f - f*f;
+g2 = e2/((1.0 - f)*(1.0 - f));
+
+lat0 = atan((1.0 - f)*tan((*elat)*rperd));
+
+cosA = cos(lat0);
+sinA = sin(lat0);
+
+den = sqrt(1.0/(1.0 + g2*sinA*sinA));
+kperd_e = rperd*radius*cosA*den;
+kperd_n = rperd*radius*(sqrt(1.0 + g2*sinA*sinA*(2.0 + g2)))*den*den*den;
+
+*sn = ((*slat) - (*elat))*kperd_n;
+*se = ((*slon) - (*elon))*kperd_e;
+}
+
+void set_ll(float *elon,float *elat,float *slon,float *slat,float *sn,float *se)
+{
+float kperd_n, kperd_e;
+double e2, den, g2, lat0;
+float cosA, sinA;
+
+double rperd = 0.017453293;
+double radius = 6378.139;
+double f = 298.256;
+
+f = 1.0/f;
+e2 = 2.0*f - f*f;
+g2 = e2/((1.0 - f)*(1.0 - f));
+
+lat0 = atan((1.0 - f)*tan((*elat)*rperd));
+
+cosA = cos(lat0);
+sinA = sin(lat0);
+
+den = sqrt(1.0/(1.0 + g2*sinA*sinA));
+kperd_e = rperd*radius*cosA*den;
+kperd_n = rperd*radius*(sqrt(1.0 + g2*sinA*sinA*(2.0 + g2)))*den*den*den;
+
+*slat = (*sn)/kperd_n + *elat;
+*slon = (*se)/kperd_e + *elon;
+}
+
+void swap_in_place(int n,char *cbuf)
+{
+char cv;
+
+while(n--)
+   {
+   cv = cbuf[0];
+   cbuf[0] = cbuf[3];
+   cbuf[3] = cv;
+
+   cv = cbuf[1];
+   cbuf[1] = cbuf[2];
+   cbuf[2] = cv;
+
+   cbuf = cbuf + 4;
+   }
+}
+
+double nt_tol(float fnt,int gnt)
+{
+double diff;
+
+diff = ((double)(fnt) - (double)(gnt));
+if(diff < 0.0)
+   diff = -diff;
+
+/*
+fprintf(stderr,"diff= %15.10e\n",diff);
+*/
+
+return(diff);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/okumura_rupm.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/okumura_rupm.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/okumura_rupm.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,220 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+void get_ormpars(struct okumura *orm,int i,int j,float *xp,float *zp,float *rt,float *vs)
+{
+float dx, dz, dxdz;
+float w0, w1, w2, w3;
+int ip0, ip1, ip2, ip3;
+float one = 1.0;
+
+ip0 = i + j*(orm->nstk);
+
+*rt = orm->rupt[ip0];
+*vs = orm->slip[ip0];
+}
+
+void okumura_stf(struct okumura *orm,int i,int j,float *s,float *u,float *stf,int nt,float *dt)
+{
+FILE *fpw;
+int it, nstf;
+int ip0, it0, it1;
+float td, tb, tr, ts, alpha, beta, gamma, ep, tt;
+float sum, da, c0;
+
+float quart = 0.25;
+float half = 0.5;
+float fone = 1.0;
+float ftwo = 2.0;
+float twop5 = 2.5;
+float fthree = 3.0;
+float p95 = 0.95;
+float p125 = 1.25;
+float p150 = 1.5;
+
+float sp, vs;
+float amax = 0.0;
+
+zapit(stf,nt);
+
+ip0 = i + j*(orm->nstk);
+
+sp = orm->slip[ip0];
+vs = orm->sv[ip0];
+
+td = 0.1;
+tb = p125*td;
+tr = orm->rist[ip0];
+ts = p150*tr;
+
+if(tr <= (*dt))  /* no STF needed */
+   {
+   sum_nostf(s,u,&sp,nt);
+   return;
+   }
+
+if(tb >= tr)
+   {
+   tb = p95*tr;
+   td = tb/p125;
+   }
+
+alpha = ftwo/td;
+gamma = half/td;
+ep = (twop5*tb - fthree*td)/(fone - td/tb);
+beta = alpha*tb*(fone - gamma*tb)*sqrt(tb - ep);
+c0 = beta/sqrt(tr - ep);
+da = -c0/(ts - tr);
+
+it0 = (int)(tb/(*dt) + 1.0);
+it1 = (int)(tr/(*dt) + 1.0);
+nstf = (int)(ts/(*dt) + 1.0);
+
+/*
+sum = 0.0;
+for(it=0;it<it0;it++)
+   {
+   tt = it*(*dt);
+   stf[it] = alpha*tt*(fone - gamma*tt);
+
+   sum = sum + (*dt)*stf[it];
+   if(stf[it] > amax)
+      amax = stf[it];
+   }
+
+for(it=it0;it<it1;it++)
+   {
+   tt = it*(*dt);
+   stf[it] = beta/sqrt(tt - ep);
+
+   sum = sum + (*dt)*stf[it];
+   if(stf[it] > amax)
+      amax = stf[it];
+   }
+
+for(it=it1;it<nstf;it++)
+   {
+   tt = it*(*dt);
+   stf[it] = c0 + (tt - tr)*da;
+
+   sum = sum + (*dt)*stf[it];
+   if(stf[it] > amax)
+      amax = stf[it];
+   }
+*/
+
+sum = 0.0;
+for(it=0;it<nstf;it++)
+   {
+   tt = it*(*dt);
+
+   if(tt <= tb)
+      stf[it] = alpha*tt*(fone - gamma*tt);
+   else if(tt <= tr)
+      stf[it] = beta/sqrt(tt - ep);
+   else if(tt < ts)
+      stf[it] = c0 + (tt - tr)*da;
+
+   sum = sum + (*dt)*stf[it];
+   if(stf[it] > amax)
+      amax = stf[it];
+   }
+
+if(sum <= 0.0)
+   return;
+
+/*
+*/
+fprintf(stdout,"D= %13.5e Dvs= %13.5e r= %13.5f\n",sp,100*vs*sum/amax,(sp-100*vs*sum/amax)/sp);
+
+/*
+if(i==0 && j==0)
+   {
+   fpw = fopen("stf_file","w");
+   fprintf(fpw,"okumura stf %d %d %13.5e %13.5e %13.5e %13.5e %13.5e\n",it0,it1,vs,td,tb,tr,ts);
+   fprintf(fpw,"%d %13.5e\n",nstf,(*dt));
+   for(it=0;it<nstf;it++)
+      fprintf(fpw,"%13.5e\n",stf[it]);
+   fclose(fpw);
+   }
+*/
+
+/* scale STF by slip and add factor of dt to prenormalize convolution */
+sum = (*dt)*sp/sum;
+for(it=0;it<nstf;it++)
+   stf[it] = stf[it]*sum;
+
+do_cnvlv(s,u,nt,stf,nstf);
+}
+
+void read_okumura(struct okumura *orm,char *rfile,float *len2)
+{
+FILE *fopfile(), *fpr;
+int i, j, k, kp;
+char string[256];
+ int error;
+
+fpr = fopfile(rfile,"r");
+
+if (fgets(string,256,fpr)==NULL) {
+  fprintf(stderr, "Error reading from %s\n", rfile);
+  exit(-4);
+}
+
+error = sscanf(string,"%d %d %f %f %f %f %f",&orm->nstk,
+                                     &orm->ndip,
+                                     &orm->dlen,
+                                     &orm->dwid,
+                                     &orm->shypo,
+                                     &orm->dhypo,
+                                     &orm->vrup);
+if (error!=7) {
+  fprintf(stderr, "Error scanning string %s.\n", string);
+  exit(-5);
+}
+
+orm->flen = (orm->nstk)*(orm->dlen);
+orm->fwid = (orm->ndip)*(orm->dwid);
+
+*len2 = 0.5*(orm->flen);
+
+orm->shypo = orm->shypo - (*len2);
+
+orm->as   = (float *) check_malloc ((orm->nstk)*(orm->ndip)*sizeof(float));
+orm->dd   = (float *) check_malloc ((orm->nstk)*(orm->ndip)*sizeof(float));
+orm->slip = (float *) check_malloc ((orm->nstk)*(orm->ndip)*sizeof(float));
+orm->sv   = (float *) check_malloc ((orm->nstk)*(orm->ndip)*sizeof(float));
+orm->rist = (float *) check_malloc ((orm->nstk)*(orm->ndip)*sizeof(float));
+orm->rupt = (float *) check_malloc ((orm->nstk)*(orm->ndip)*sizeof(float));
+
+for(j=0;j<(orm->ndip);j++)
+   {
+   for(i=0;i<(orm->nstk);i++)
+      {
+      k = i + j*(orm->nstk);
+
+      if (fgets(string,256,fpr)==NULL){
+		fprintf(stderr, "Error reading from file %s.\n", rfile);
+		exit(-4);
+	  }
+
+      error = sscanf(string,"%f %f %f %f %f %f",&orm->as[k],
+                                              &orm->dd[k],
+                                              &orm->slip[k],
+                                              &orm->sv[k],
+                                              &orm->rist[k],
+                                              &orm->rupt[k]);
+	  if (error!=6) {
+		fprintf(stderr, "Error scanning string %s.\n", string);
+		exit(-5);
+	  }
+
+      orm->as[k] = orm->as[k] - (*len2); /* move origin to top center */
+      if(orm->dd[k] < 0.0)               /* make positive down-dip */
+	 orm->dd[k] = -orm->dd[k];
+
+      }
+   }
+fclose(fpr);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/ray_stimes.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/ray_stimes.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/ray_stimes.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,100 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+void copy_vpvs(struct velmodel *vsm,struct velmodel *vpm);
+
+main(int ac,char **av)
+{
+struct velmodel vpmod, vsmod;
+FILE *fpr, *fopfile();
+int nr, nd, i, j, ip, ishall;
+float *rng, *dep, *ptime, *stime;
+double rayp, rad;
+char locfile[128], velfile[128];
+
+double eps = 1.0e-12;
+float recd = 0.0;
+float shallowest_depth = 0.0;
+float htol = 0.1;
+float rloc = 0.0;
+
+sprintf(locfile,"locations.dat");
+
+setpar(ac,av);
+mstpar("velfile","s",velfile);
+getpar("locfile","s",locfile);
+getpar("shallowest_depth","f",&shallowest_depth);
+endpar();
+
+fpr = fopfile(locfile,"r");
+
+fscanf(fpr,"%d",&nr);
+rng = (float *) check_malloc (nr*sizeof(float));
+for(i=0;i<nr;i++)
+   fscanf(fpr,"%f",&rng[i]);
+
+fscanf(fpr,"%d",&nd);
+dep = (float *) check_malloc (nd*sizeof(float));
+for(i=0;i<nd;i++)
+   fscanf(fpr,"%f",&dep[i]);
+
+fclose(fpr);
+
+ptime = (float *) check_malloc (nr*nd*sizeof(float));
+stime = (float *) check_malloc (nr*nd*sizeof(float));
+
+read_velmodel(velfile,&vsmod);
+copy_vpvs(&vsmod,&vpmod);
+
+for(i=0;i<nd;i++)
+   {
+   for(j=0;j<nr;j++)
+      {
+      get_rupt(&vpmod,&htol,&dep[i],&recd,&rloc,&rng[j],&rayp,&rad,&ptime[j+i*nr]);
+      get_rupt(&vsmod,&htol,&dep[i],&recd,&rloc,&rng[j],&rayp,&rad,&stime[j+i*nr]);
+      }
+   }
+
+for(i=0;i<nd;i++)
+   {
+   ishall = i;
+   while(dep[ishall] < shallowest_depth)
+      ishall++;
+
+   for(j=0;j<nr;j++)
+      {
+      ip = j + ishall*nr;
+
+      printf("%13.7f %13.7f %13.7f\n",dep[i],rng[j],ptime[ip]);
+      printf("%13.7f %13.7f %13.7f\n",dep[i],rng[j],stime[ip]);
+      }
+   }
+}
+
+void copy_vpvs(struct velmodel *vsm,struct velmodel *vpm)
+{
+int i;
+
+vpm->nlay = vsm->nlay;
+
+vpm->vp = (float *)check_malloc(vpm->nlay*sizeof(float));
+vpm->vs = (double *)check_malloc(vpm->nlay*sizeof(double));
+vpm->den = (float *)check_malloc(vpm->nlay*sizeof(float));
+vpm->th = (float *)check_malloc(vpm->nlay*sizeof(float));
+vpm->dep = (float *)check_malloc(vpm->nlay*sizeof(float));
+vpm->mu = (float *)check_malloc(vpm->nlay*sizeof(float));
+vpm->invb2 = (double *)check_malloc(vpm->nlay*sizeof(double));
+
+for(i=0;i<vpm->nlay;i++)
+   {
+   vpm->th[i] = vsm->th[i];
+   vpm->vp[i] = vsm->vp[i];
+   vpm->den[i] = vsm->den[i];
+   vpm->dep[i] = vsm->dep[i];
+   vpm->mu[i] = vsm->mu[i];
+
+   vpm->vs[i] = vsm->vp[i];
+   vpm->invb2[i] = 1.0/(vsm->vp[i]*vsm->vp[i]);
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/rob_rupm.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/rob_rupm.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/rob_rupm.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,300 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+void get_rrmpars(struct rob *rrm,int i,int j,float *xp,float *zp,float *rt,float *vs,float *rk,float *tsf)
+{
+float xx, zz;
+int ip;
+
+ip = i + j*(rrm->nstk);
+
+xx = *xp - rrm->shyp;
+zz = *zp - rrm->dhyp;
+
+*rt = -1.0;
+if(rrm->vrup[ip] > 0.0)
+   *rt = sqrt(xx*xx + zz*zz)/rrm->vrup[ip] + rrm->tsfac[ip];
+
+*rk = rrm->rake[ip];
+*vs = rrm->slip[ip];
+*tsf = rrm->tsfac[ip];
+}
+
+void rob_stf(struct rob *rrm,int i,int j,float *s,float *u,float *stf,int nt,float *dt,float *z0)
+{
+FILE *fpw;
+int it, nstf;
+int ip, it0, it1, it2;
+float tr, amp, a0;
+float sum;
+
+float alpha = 0.1;      /* 1st triangle has pulse width = 2*alpha*trise */
+float betadeep = 0.2;       /* 2nd triangle has amplitude = beta*A (z0>dmax)*/
+float betashal = 0.5;       /* 2nd triangle has amplitude = beta*A (z0<dmin)*/
+float beta, dbdd;
+
+float dmin = 4.0;
+float dmax = 6.0;
+
+dbdd = (betadeep - betashal)/(dmax-dmin);
+
+if((*z0) >= dmax)
+   beta = betadeep;
+else if((*z0) < dmax && (*z0) > dmin)
+   beta = betadeep - (dmax-(*z0))*dbdd;
+else
+   beta = betashal;
+
+zapit(stf,nt);
+
+ip = i + j*(rrm->nstk);
+
+tr = rrm->trise[ip];
+
+alpha = alpha*tr;
+
+it0 = (int)((alpha)/(*dt) + 0.5);
+if(it0 < 2)
+   it0 = 2;
+it1 = (int)((tr)/(*dt) + 0.5);
+if(it1 < 4)
+   it1 = 4;
+
+it2 = (2 - beta)*it0;
+
+a0 = 1.0;
+amp = a0/(float)(it0);
+
+for(it=0;it<it0;it++)
+   stf[it] = it*amp;
+
+for(it=it0;it<it2;it++)
+   stf[it] = (2*it0-it)*amp;
+
+amp = beta*a0/(float)(it1-it2);
+
+for(it=it2;it<it1;it++)
+   stf[it] = beta*a0 + (it2-it)*amp;
+
+nstf = nt-1;
+while(stf[nstf] == (float)(0.0) && nstf)
+   nstf--;
+
+if(nstf == 0)
+   {
+   sum_nostf(s,u,&(rrm->slip[ip]),nt);
+   return;
+   }
+
+if(nstf < nt-1)
+   nstf = nstf + 2;;
+
+sum = 0.0;
+for(it=0;it<nstf;it++)
+   sum = sum + (*dt)*stf[it];
+
+if(sum <= 0.0)
+   return;
+
+/* scale STF by slip and add factor of dt to prenormalize convolution */
+sum = (*dt)*(rrm->slip[ip])/sum;
+for(it=0;it<nstf;it++)
+   stf[it] = stf[it]*sum;
+
+/*
+if(i==1 && j==0)
+   {
+   fpw = fopen("stf_file","w");
+   fprintf(fpw,"stf stf\n");
+
+   fprintf(fpw,"%d %13.5e\n",nstf,(*dt));
+   for(it=0;it<nstf;it++)
+      fprintf(fpw,"%13.5e\n",stf[it]);
+   fclose(fpw);
+   }
+*/
+
+do_cnvlv(s,u,nt,stf,nstf);
+}
+
+void read_rob(struct rob *rrm,char *rfile,float *tsf)
+{
+FILE *fopfile(), *fpr;
+float elon, elat, stk, dip, dtop, shyp, dhyp;
+float xmax, xavg, sf;
+int i, j, k, it;
+char string[256], *sptr;
+ int error;
+
+fpr = fopfile(rfile,"r");
+
+if (fgets(string,256,fpr)==NULL) {
+  fprintf(stderr, "Error reading from file %s.\n", rfile);
+  exit(-6);
+}
+
+error = sscanf(string,"%f %f %d %d %f %f",&rrm->elon,
+				  &rrm->elat,
+				  &rrm->nstk,
+                                  &rrm->ndip,
+                                  &rrm->flen,
+                                  &rrm->fwid);
+
+ if (error!=6) {
+   fprintf(stderr, "Error scanning string %s.\n", string);
+   exit(-7);
+ }
+
+
+ if (fgets(string,256,fpr)==NULL) {
+   fprintf(stderr, "Error reading from file %s.\n", rfile);
+   exit(-6);
+ }
+error = sscanf(string,"%f %f %f %f %f",&rrm->stk,
+				  &rrm->dip,
+				  &rrm->dtop,
+                                  &rrm->shyp,
+                                  &rrm->dhyp);
+
+ if (error!=5) {
+   fprintf(stderr, "Error scanning string %s.\n", string);
+   exit(-7);
+ }
+
+rrm->dlen = (rrm->flen)/(rrm->nstk);
+rrm->dwid = (rrm->fwid)/(rrm->ndip);
+
+rrm->as    = (float *) check_malloc ((rrm->nstk)*(rrm->ndip)*sizeof(float));
+rrm->dd    = (float *) check_malloc ((rrm->nstk)*(rrm->ndip)*sizeof(float));
+rrm->slip  = (float *) check_malloc ((rrm->nstk)*(rrm->ndip)*sizeof(float));
+rrm->rake  = (float *) check_malloc ((rrm->nstk)*(rrm->ndip)*sizeof(float));
+rrm->trise = (float *) check_malloc ((rrm->nstk)*(rrm->ndip)*sizeof(float));
+rrm->vrup  = (float *) check_malloc ((rrm->nstk)*(rrm->ndip)*sizeof(float));
+rrm->tsfac = (float *) check_malloc ((rrm->nstk)*(rrm->ndip)*sizeof(float));
+
+xmax = 0.0;
+xavg = 0.0;
+for(j=0;j<(rrm->ndip);j++)
+   {
+   for(i=0;i<(rrm->nstk);i++)
+      {
+      k = i + j*(rrm->nstk);
+
+      if (fgets(string,256,fpr)==NULL) {
+		fprintf(stderr, "Error reading from file %s.\n", rfile);
+		exit(-6);
+	  }
+      error = sscanf(string,"%f %f %f %f %f %f",&rrm->as[k],
+                                        &rrm->dd[k],
+                                        &rrm->slip[k],
+                                        &rrm->rake[k],
+                                        &rrm->trise[k],
+                                        &rrm->vrup[k]);
+	  if (error!=6) {
+		fprintf(stderr, "Error scanning string %s.\n", string);
+		exit(-7);
+	  }
+      xavg = xavg + rrm->slip[k];
+      if(rrm->slip[k] > xmax)
+	 xmax = rrm->slip[k];
+      }
+   }
+fclose(fpr);
+
+xavg = xavg/(float)((rrm->nstk)*(rrm->ndip));
+if((xmax-xavg) != (float)(0.0))
+   sf = 1.0/(xmax-xavg);
+else
+   *tsf = sf = 0.0;
+
+for(j=0;j<(rrm->ndip);j++)
+   {
+   for(i=0;i<(rrm->nstk);i++)
+      {
+      k = i + j*(rrm->nstk);
+
+      rrm->tsfac[k] = sf*(rrm->slip[k]-xavg)*(*tsf);
+      }
+   }
+}
+
+int gen_rob_stf(struct rob *rrm,int i,int j,float *stf,int nt,float *dt,float *z0)
+{
+int it, nstf;
+int ip, it0, it1, it2;
+float tr, amp, a0;
+float sum;
+
+float alpha = 0.1;      /* 1st triangle has pulse width = 2*alpha*trise */
+float betadeep = 0.2;       /* 2nd triangle has amplitude = beta*A (z0>dmax)*/
+float betashal = 0.5;       /* 2nd triangle has amplitude = beta*A (z0<dmin)*/
+float beta, dbdd;
+
+float dmin = 4.0;
+float dmax = 6.0;
+
+dbdd = (betadeep - betashal)/(dmax-dmin);
+
+if((*z0) >= dmax)
+   beta = betadeep;
+else if((*z0) < dmax && (*z0) > dmin)
+   beta = betadeep - (dmax-(*z0))*dbdd;
+else
+   beta = betashal;
+
+zapit(stf,nt);
+
+ip = i + j*(rrm->nstk);
+
+tr = rrm->trise[ip];
+
+alpha = alpha*tr;
+
+it0 = (int)((alpha)/(*dt) + 0.5);
+if(it0 < 2)
+   it0 = 2;
+it1 = (int)((tr)/(*dt) + 0.5);
+if(it1 < 4)
+   it1 = 4;
+
+it2 = (2 - beta)*it0;
+
+a0 = 1.0;
+amp = a0/(float)(it0);
+
+for(it=0;it<it0;it++)
+   stf[it] = it*amp;
+
+for(it=it0;it<it2;it++)
+   stf[it] = (2*it0-it)*amp;
+
+amp = beta*a0/(float)(it1-it2);
+
+for(it=it2;it<it1;it++)
+   stf[it] = beta*a0 + (it2-it)*amp;
+
+nstf = nt-1;
+while(stf[nstf] == (float)(0.0) && nstf)
+   nstf--;
+
+if(nstf == 0)
+   return(0);
+
+if(nstf < nt-1)
+   nstf = nstf + 2;;
+
+sum = 0.0;
+for(it=0;it<nstf;it++)
+   sum = sum + (*dt)*stf[it];
+
+if(sum <= 0.0)
+   return(0);
+
+/* scale STF by slip */
+sum = (rrm->slip[ip])/sum;
+for(it=0;it<nstf;it++)
+   stf[it] = stf[it]*sum;
+
+return(nstf);
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/ruptime.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/ruptime.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/ruptime.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,413 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+void read_velmodel(char *vfile,struct velmodel *vm)
+{
+FILE *fpr, *fopfile();
+int i;
+char str[512];
+ int error;
+
+fpr = fopfile(vfile,"r");
+
+if (fgets(str,512,fpr)==NULL) {
+  fprintf(stderr, "Error reading from file %s.\n", vfile);
+  exit(-8);
+}
+
+error = sscanf(str,"%d",&vm->nlay);
+ if (error!=1) {
+   fprintf(stderr, "Error scanning string %s.\n", str);
+   exit(-9);
+ }
+
+vm->vp = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->vs = (double *)check_malloc(vm->nlay*sizeof(double));
+vm->den = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->th = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->dep = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->mu = (float *)check_malloc(vm->nlay*sizeof(float));
+vm->invb2 = (double *)check_malloc(vm->nlay*sizeof(double));
+
+for(i=0;i<vm->nlay;i++)
+   {
+	 if (fgets(str,512,fpr)==NULL) {
+	   fprintf(stderr, "Error reading from file %s.\n", vfile);
+	   exit(-8);
+	 }
+	 error = sscanf(str,"%f %f %lf %f",&vm->th[i],&vm->vp[i],&vm->vs[i],&vm->den[i]);
+	 if (error!=4) {
+	   fprintf(stderr, "Error scanning string %s.\n", str);
+	   exit(-9);
+	 }
+
+   if(i==0)
+      vm->dep[i] = vm->th[i];
+   else
+      vm->dep[i] = vm->dep[i-1] + vm->th[i];
+
+   vm->mu[i] = vm->vs[i]*vm->vs[i]*vm->den[i]*1.0e+10;  /* in CMS units */
+   vm->invb2[i] = 1.0/(vm->vs[i]*vm->vs[i]);
+   }
+fclose(fpr);
+}
+
+void conv2vrup(struct velmodel *vm,struct velmodel *rvm,float *dip,float *ztop,float *wid,float *rvf,float *shal_vr)
+{
+int i, j, k;
+float invsinA, dep, zbot;
+char string[256];
+
+float rperd = 0.017453293;
+float dmin = 4.0;
+float dmax = 6.0;
+float rvfac;
+
+rvm->nlay = vm->nlay;
+rvm->vs = (double *)check_malloc(rvm->nlay*sizeof(double));
+rvm->th = (float *)check_malloc(rvm->nlay*sizeof(float));
+rvm->invb2 = (double *)check_malloc(rvm->nlay*sizeof(double));
+
+i = 0;
+dep = vm->th[0];
+while(dep < (*ztop))
+   {
+   i++;
+   dep = dep + vm->th[i];
+   }
+
+zbot = *ztop + (*wid)*sin((*dip)*rperd);
+invsinA = 1.0/sin((*dip)*rperd);
+
+if(dep >= dmax)
+   rvfac = (*rvf);
+else if(dep < dmax && dep > dmin)
+   rvfac = (*rvf)*(1.0 - (1.0 - (*shal_vr))*(dmax-dep)/(dmax-dmin));
+else
+   rvfac = (*rvf)*(*shal_vr);
+
+rvm->th[0] = invsinA*(dep - (*ztop));
+rvm->vs[0] = rvfac*vm->vs[i];
+
+j = i;
+k = 0;
+while(dep < zbot)
+   {
+   j++; k++;
+   dep = dep + vm->th[j];
+
+   if(dep >= dmax)
+      rvfac = (*rvf);
+   else if(dep < dmax && dep > dmin)
+      rvfac = (*rvf)*(1.0 - (1.0 - (*shal_vr))*(dmax-dep)/(dmax-dmin));
+   else
+      rvfac = (*rvf)*(*shal_vr);
+
+   rvm->th[k] = invsinA*vm->th[j];
+   rvm->vs[k] = rvfac*vm->vs[j];
+   }
+
+rvm->nlay = k + 1;
+
+for(i=0;i<rvm->nlay;i++)
+   rvm->invb2[i] = 1.0/(rvm->vs[i]*rvm->vs[i]);
+}
+
+get_rupt(vm,h,srcd,recd,srcr,recr,p,rad,tt)
+struct velmodel *vm;
+float *h, *srcr, *recr, *recd, *tt, *srcd;
+double *p, *rad;
+{
+double sth, rth, rng;
+float sdep, rdep;
+float tol;
+float tup, thead;
+int k, slay, rlay, linc;
+
+float tenth = 0.1;
+double eps = 1.0e-12;
+
+tol = tenth*(*h);
+
+rng = *srcr - *recr;
+if(rng < 0.0)
+   rng = -rng;
+
+k = 0;
+sdep = vm->th[0];
+while((*srcd) > sdep)
+   {
+   k++;
+   sdep = sdep + vm->th[k];
+   }
+slay = k;
+
+k = 0;
+rdep = vm->th[0];
+while((*recd) > rdep)
+   {
+   k++;
+   rdep = rdep + vm->th[k];
+   }
+rlay = k;
+
+sth = sdep - *srcd;
+rth = rdep - *recd;
+get_headtime(vm,slay,&sth,rlay,&rth,&rng,&thead);
+
+if(slay != rlay)
+   {
+   if(sdep > rdep)
+      {
+      sth = vm->th[slay] - (sdep - *srcd);
+      rth = rdep - *recd;
+      linc = -1;
+      }
+   else
+      {
+      sth = sdep - *srcd;
+      rth = vm->th[rlay] - (rdep - *recd);
+      linc = 1;
+      }
+
+/*
+   bisection method
+*/
+    bisect_p(vm,slay,&sth,rlay,&rth,p,&eps,&tol,&rng,linc);
+
+         /* get path length and travel time for correct ray parameter */
+
+   get_radtime(vm,slay,&sth,rlay,&rth,p,rad,&tup,linc);
+   }
+else
+   {
+   *rad = sqrt(rng*rng + ((*srcd)-(*recd))*((*srcd)-(*recd)));
+   tup = (*rad)/vm->vs[slay];
+   }
+
+*tt = thead;
+if(tup < thead)
+   *tt = tup;
+/*
+else
+   fprintf(stderr,"*** thead selected\n");
+
+fprintf(stderr,"*** thd= %f tup= %f\n",thead,tup);
+*/
+}
+
+bisect_p(vm,slay,sth,rlay,rth,p,eps,tol,rng,linc)
+struct velmodel *vm;
+double *sth, *rth, *p, *rng, *eps;
+float *tol;
+int linc, slay, rlay;
+{
+double tp0, pp, pm, p0, r0, delr;
+int i, ic;
+
+int nc = 100;
+
+p0 = 1.0/vm->vs[slay];
+for(i=slay+linc;i!=rlay;i=i+linc)
+   {
+   tp0 = 1.0/vm->vs[i];
+   if(tp0 < p0)
+      p0 = tp0;
+   }
+tp0 = 1.0/vm->vs[rlay];
+if(tp0 < p0)
+   p0 = tp0;
+
+*p = *eps;
+
+get_range(vm,slay,sth,rlay,rth,p,&r0,linc);
+
+if(r0 < *rng)  /* if not, then p=0 (vertical ray) */
+   {
+                   /* bracket range with ray parameter extremes */
+
+   ic = 0;
+   while(r0 < *rng && ic < nc)
+      {
+      ic++;
+      *p = p0*(1.0 - (*eps)/(double)(ic*ic));
+      get_range(vm,slay,sth,rlay,rth,p,&r0,linc);
+      }
+
+   pp = *p;
+   pm = *eps;
+
+   delr = r0 - *rng;
+
+/*
+   use bisection to converge to correct ray parameter
+*/
+
+   ic = 0;
+   while(delr > *tol)
+      {
+      *p = 0.5*(pp + pm);
+
+      if(*p == pp || *p == pm) /* beyond double precision accuracy */
+         break;
+
+      get_range(vm,slay,sth,rlay,rth,p,&r0,linc);
+      if(r0 >= *rng)
+         {
+         delr = r0 - *rng;
+         pp = *p;
+         }
+      else
+         {
+         delr = *rng - r0;
+         pm = *p;
+         }
+
+      ic++;
+      if(ic > nc)
+         break;
+      }
+   }
+else
+   *p = 0.0;
+}
+
+get_range(vm,slay,sth,rlay,rth,p,r0,linc)
+struct velmodel *vm;
+double *sth, *rth, *p, *r0;
+int linc, slay, rlay;
+{
+int i;
+double denom, arg;
+double invp2;
+
+invp2 = 1.0/((*p)*(*p));
+
+denom = sqrt(invp2*vm->invb2[slay] - 1.0);
+*r0 = (*sth)/denom;
+
+for(i=slay+linc;i!=rlay;i=i+linc)
+   {
+   denom = sqrt(invp2*vm->invb2[i] - 1.0);
+   *r0 = *r0 + vm->th[i]/denom;
+   }
+
+denom = sqrt(invp2*vm->invb2[rlay] - 1.0);
+*r0 = *r0 + (*rth)/denom;
+}
+
+get_radtime(vm,slay,sth,rlay,rth,p,r0,tt,linc)
+struct velmodel *vm;
+double *sth, *rth, *p, *r0;
+float *tt;
+int linc, slay, rlay;
+{
+int i;
+double r1, rad, arg;
+double denom, invp2;
+
+if(*p > 0.0)
+   {
+   arg = 1.0 - (*p)*(*p)*vm->vs[slay]*vm->vs[slay];
+   denom = sqrt(arg);
+
+   *r0 = (*sth)/denom;
+   *tt = *r0/vm->vs[slay];
+
+   for(i=slay+linc;i!=rlay;i=i+linc)
+      {
+      arg = 1.0 - (*p)*(*p)*vm->vs[i]*vm->vs[i];
+      denom = sqrt(arg);
+
+      rad = vm->th[i]/denom;
+      *r0 = *r0 + rad;
+      *tt = *tt + rad/vm->vs[i];
+      }
+
+   arg = 1.0 - (*p)*(*p)*vm->vs[rlay]*vm->vs[rlay];
+   denom = sqrt(arg);
+
+   rad = (*rth)/denom;
+   *r0 = *r0 + rad;
+   *tt = *tt + rad/vm->vs[rlay];
+   }
+else
+   {
+   *r0 = *sth;
+   *tt = *r0/vm->vs[slay];
+
+   for(i=slay+linc;i!=rlay;i=i+linc)
+      {
+      *r0 = *r0 + vm->th[i];
+      *tt = *tt + vm->th[i]/vm->vs[i];
+      }
+
+   *r0 = *r0 + *rth;
+   *tt = *tt + (*rth)/vm->vs[rlay];
+   }
+}
+
+get_headtime(mod,slay,sth,rlay,rth,rad,tt)
+struct velmodel *mod;
+double *sth, *rth, *rad;
+float *tt;
+int slay, rlay;
+{
+int vflag, j, jj, jst, jnd;
+double inv2, rc, tinc, arg;
+
+jst = rlay;
+if(slay > rlay)
+   jst = slay;
+
+*tt = 1.0e+5;
+for(jnd=jst+1;jnd<mod->nlay;jnd++)
+   {
+   jj = rlay;
+   if(slay < rlay)
+      jj = slay;
+
+   vflag = 1;
+   for(j=jj;j<jnd;j++)
+      {
+      if(mod->vs[j] > mod->vs[jnd])
+	 vflag = -1;
+      }
+
+   if(vflag == 1)
+      {
+      tinc = (*rad)/mod->vs[jnd];
+      inv2 = 1.0/(mod->vs[jnd]*mod->vs[jnd]);
+
+      arg = 1.0/(mod->vs[slay]*mod->vs[slay]) - inv2;
+      arg = sqrt(arg);
+      tinc = tinc + (*sth)*arg;
+      rc = (*sth)/(arg*mod->vs[jnd]);
+
+      for(j=slay+1;j<jnd;j++)
+         {
+         arg = 1.0/(mod->vs[j]*mod->vs[j]) - inv2;
+         arg = sqrt(arg);
+         tinc = tinc + mod->th[j]*arg;
+         rc = rc + mod->th[j]/(arg*mod->vs[jnd]);
+         }
+
+      for(j=rlay+1;j<jnd;j++)
+         {
+         arg = 1.0/(mod->vs[j]*mod->vs[j]) - inv2;
+         arg = sqrt(arg);
+         tinc = tinc + mod->th[j]*arg;
+         rc = rc + mod->th[j]/(arg*mod->vs[jnd]);
+         }
+
+      arg = 1.0/(mod->vs[rlay]*mod->vs[rlay]) - inv2;
+      arg = sqrt(arg);
+      tinc = tinc + (*rth)*arg;
+      rc = rc + (*rth)/(arg*mod->vs[jnd]);
+
+      if(tinc < *tt && rc < (*rad))
+         *tt = tinc;
+      }
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/sgt3d_subs.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/sgt3d_subs.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/sgt3d_subs.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,813 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+void timeshift_sgt(float *seis,int ntout,float *gf,struct sgtheader *gfh,int ntsum,float *t0,float *bt0,int nsgt);
+
+void *sgt_subset(struct sgtfileparams *sgtfpar,struct sgtfileparams *sgtextract,struct sgtmaster *sgtmast,struct sgtindex *sgtindx,int nm,long long *mindx,char *dir)
+{
+struct sgtmaster exmast;
+struct sgtindex *exindx;
+struct sgtheader sgthead;
+float *sgt;
+int im, ip, nreed;
+off_t blen, off;
+char ofile[512];
+
+exmast.geoproj = sgtmast->geoproj;
+exmast.modellon = sgtmast->modellon;
+exmast.modellat = sgtmast->modellat;
+exmast.modelrot = sgtmast->modelrot;
+exmast.xshift = sgtmast->xshift;
+exmast.yshift = sgtmast->yshift;
+exmast.globnp = nm;
+exmast.localnp = nm;
+exmast.nt = sgtmast->nt;
+
+exindx = (struct sgtindex *) check_malloc ((exmast.globnp)*sizeof(struct sgtindex));
+
+for(im=0;im<nm;im++)
+   {
+   ip = 0;
+   while(mindx[im] > sgtindx[ip].indx && ip < (sgtmast->globnp)-1)
+      ip++;
+
+   exindx[im].indx = sgtindx[ip].indx;
+   exindx[im].xsgt = sgtindx[ip].xsgt;
+   exindx[im].ysgt = sgtindx[ip].ysgt;
+   exindx[im].zsgt = sgtindx[ip].zsgt;
+   exindx[im].h = sgtindx[ip].h;
+
+   if(mindx[im] != exindx[im].indx)
+      {
+      fprintf(stderr,"houston, we have a problem...\n");
+      exit(-1);
+      }
+   }
+
+sgt = (float *) check_malloc (6*(sgtmast->nt)*sizeof(float));
+blen = (off_t)(sizeof(struct sgtheader)) + (off_t)(6*(sgtmast->nt)*sizeof(float));
+
+if(strcmp(dir,".") != 0)
+   makedir(dir);
+
+if(sgtfpar->xfile[0] != '\0')
+   {
+   if(sgtextract->xfile[0] == '/')
+      sprintf(ofile,"%s",sgtextract->xfile);
+   else
+      sprintf(ofile,"%s/%s",dir,sgtextract->xfile);
+
+   sgtextract->xfdr = croptrfile(ofile);
+
+   rite(sgtextract->xfdr,&exmast,sizeof(struct sgtmaster));
+   rite(sgtextract->xfdr,exindx,(exmast.globnp)*sizeof(struct sgtindex));
+
+   for(im=0;im<nm;im++)
+      {
+      ip = 0;
+      while(mindx[im] > sgtindx[ip].indx && ip < (sgtmast->globnp)-1)
+         ip++;
+
+      off = sgtfpar->head_off + (off_t)(ip)*blen - sgtfpar->xcur_off;
+      lseek(sgtfpar->xfdr,off,SEEK_CUR);
+      sgtfpar->xcur_off = sgtfpar->head_off + (off_t)(ip)*blen;
+
+      nreed = reed(sgtfpar->xfdr,&sgthead,sizeof(struct sgtheader));
+      sgtfpar->xcur_off = sgtfpar->xcur_off + (off_t)(nreed);
+
+      nreed = reed(sgtfpar->xfdr,sgt,6*(sgtmast->nt)*sizeof(float));
+      sgtfpar->xcur_off = sgtfpar->xcur_off + (off_t)(nreed);
+
+      rite(sgtextract->xfdr,&sgthead,sizeof(struct sgtheader));
+      rite(sgtextract->xfdr,sgt,6*(sgtmast->nt)*sizeof(float));
+      }
+
+   close(sgtfpar->xfdr);
+   close(sgtextract->xfdr);
+   }
+
+if(sgtfpar->yfile[0] != '\0')
+   {
+   if(sgtextract->yfile[0] == '/')
+      sprintf(ofile,"%s",sgtextract->yfile);
+   else
+      sprintf(ofile,"%s/%s",dir,sgtextract->yfile);
+
+   sgtextract->yfdr = croptrfile(ofile);
+
+   rite(sgtextract->yfdr,&exmast,sizeof(struct sgtmaster));
+   rite(sgtextract->yfdr,exindx,(exmast.globnp)*sizeof(struct sgtindex));
+
+   for(im=0;im<nm;im++)
+      {
+      ip = 0;
+      while(mindx[im] > sgtindx[ip].indx && ip < (sgtmast->globnp)-1)
+         ip++;
+
+      off = sgtfpar->head_off + (off_t)(ip)*blen - sgtfpar->ycur_off;
+      lseek(sgtfpar->yfdr,off,SEEK_CUR);
+      sgtfpar->ycur_off = sgtfpar->head_off + (off_t)(ip)*blen;
+
+      nreed = reed(sgtfpar->yfdr,&sgthead,sizeof(struct sgtheader));
+      sgtfpar->ycur_off = sgtfpar->ycur_off + (off_t)(nreed);
+
+      nreed = reed(sgtfpar->yfdr,sgt,6*(sgtmast->nt)*sizeof(float));
+      sgtfpar->ycur_off = sgtfpar->ycur_off + (off_t)(nreed);
+
+      rite(sgtextract->yfdr,&sgthead,sizeof(struct sgtheader));
+      rite(sgtextract->yfdr,sgt,6*(sgtmast->nt)*sizeof(float));
+      }
+
+   close(sgtfpar->yfdr);
+   close(sgtextract->yfdr);
+   }
+
+if(sgtfpar->zfile[0] != '\0')
+   {
+   if(sgtextract->zfile[0] == '/')
+      sprintf(ofile,"%s",sgtextract->zfile);
+   else
+      sprintf(ofile,"%s/%s",dir,sgtextract->zfile);
+
+   sgtextract->zfdr = croptrfile(ofile);
+
+   rite(sgtextract->zfdr,&exmast,sizeof(struct sgtmaster));
+   rite(sgtextract->zfdr,exindx,(exmast.globnp)*sizeof(struct sgtindex));
+
+   for(im=0;im<nm;im++)
+      {
+      ip = 0;
+      while(mindx[im] > sgtindx[ip].indx && ip < (sgtmast->globnp)-1)
+         ip++;
+
+      off = sgtfpar->head_off + (off_t)(ip)*blen - sgtfpar->zcur_off;
+      lseek(sgtfpar->zfdr,off,SEEK_CUR);
+      sgtfpar->zcur_off = sgtfpar->head_off + (off_t)(ip)*blen;
+
+      nreed = reed(sgtfpar->zfdr,&sgthead,sizeof(struct sgtheader));
+      sgtfpar->zcur_off = sgtfpar->zcur_off + (off_t)(nreed);
+
+      nreed = reed(sgtfpar->zfdr,sgt,6*(sgtmast->nt)*sizeof(float));
+      sgtfpar->zcur_off = sgtfpar->zcur_off + (off_t)(nreed);
+
+      rite(sgtextract->zfdr,&sgthead,sizeof(struct sgtheader));
+      rite(sgtextract->zfdr,sgt,6*(sgtmast->nt)*sizeof(float));
+      }
+
+   close(sgtfpar->zfdr);
+   close(sgtextract->zfdr);
+   }
+}
+
+struct sgtindex *get_sgtpars(struct sgtfileparams *sgtfpar,struct sgtmaster *sgtmast,struct sgtindex *sgtindx)
+{
+struct sgtmaster tmast;
+struct sgtindex *tindx;
+int ip;
+
+int eflag = 0;
+int rflag = 0;
+
+if(sgtfpar->xfile[0] != '\0')
+   {
+   sgtfpar->xfdr = opfile_ro(sgtfpar->xfile);
+
+   reed(sgtfpar->xfdr,sgtmast,sizeof(struct sgtmaster));
+   sgtindx = (struct sgtindex *) check_malloc ((sgtmast->globnp)*sizeof(struct sgtindex));
+
+   reed(sgtfpar->xfdr,sgtindx,(sgtmast->globnp)*sizeof(struct sgtindex));
+
+   sgtfpar->head_off = (off_t)(sizeof(struct sgtmaster)) + (off_t)((sgtmast->globnp)*sizeof(struct sgtindex));
+   sgtfpar->xcur_off = sgtfpar->head_off;
+
+   rflag = 1;
+   }
+
+if(sgtfpar->yfile[0] != '\0')
+   {
+   sgtfpar->yfdr = opfile_ro(sgtfpar->yfile);
+
+   if(rflag == 0)
+      {
+      reed(sgtfpar->yfdr,sgtmast,sizeof(struct sgtmaster));
+      sgtindx = (struct sgtindex *) check_malloc ((sgtmast->globnp)*sizeof(struct sgtindex));
+      reed(sgtfpar->yfdr,sgtindx,(sgtmast->globnp)*sizeof(struct sgtindex));
+
+      sgtfpar->head_off = (off_t)(sizeof(struct sgtmaster)) + (off_t)((sgtmast->globnp)*sizeof(struct sgtindex));
+      }
+   else
+      {
+      reed(sgtfpar->yfdr,&tmast,sizeof(struct sgtmaster));
+
+      eflag = 0;
+      if(tmast.geoproj != sgtmast->geoproj)
+         eflag = -1;
+      if(tmast.modellon > sgtmast->modellon + 0.001 || tmast.modellon < sgtmast->modellon - 0.001)
+         eflag = -1;
+      if(tmast.modellat > sgtmast->modellat + 0.001 || tmast.modellat < sgtmast->modellat - 0.001)
+         eflag = -1;
+      if(tmast.modelrot > sgtmast->modelrot + 0.001 || tmast.modelrot < sgtmast->modelrot - 0.001)
+         eflag = -1;
+      if(tmast.xshift > sgtmast->xshift + 0.001 || tmast.xshift < sgtmast->xshift - 0.001)
+         eflag = -1;
+      if(tmast.yshift > sgtmast->yshift + 0.001 || tmast.yshift < sgtmast->yshift - 0.001)
+         eflag = -1;
+      if(tmast.globnp != sgtmast->globnp)
+         eflag = -1;
+      if(tmast.localnp != sgtmast->localnp)
+         eflag = -1;
+      if(tmast.nt != sgtmast->nt)
+         eflag = -1;
+
+      if(eflag != 0)
+         {
+	 fprintf(stderr,"sgtmaster inconsistency in yfile= %s, exiting ...\n",sgtfpar->yfile);
+	 exit(-1);
+	 }
+
+      tindx = (struct sgtindex *) check_malloc ((tmast.globnp)*sizeof(struct sgtindex));
+      reed(sgtfpar->yfdr,tindx,(tmast.globnp)*sizeof(struct sgtindex));
+
+      for(ip=0;ip<sgtmast->globnp;ip++)
+         {
+         if(tindx[ip].indx != sgtindx[ip].indx)
+            eflag = -1;
+	 }
+
+      if(eflag != 0)
+         {
+	 fprintf(stderr,"sgtindex inconsistency in yfile= %s, exiting ...\n",sgtfpar->yfile);
+	 exit(-1);
+	 }
+
+      free(tindx);
+      }
+
+   sgtfpar->ycur_off = sgtfpar->head_off;
+   rflag = 1;
+   }
+
+if(sgtfpar->zfile[0] != '\0')
+   {
+   sgtfpar->zfdr = opfile_ro(sgtfpar->zfile);
+
+   if(rflag == 0)
+      {
+      reed(sgtfpar->zfdr,sgtmast,sizeof(struct sgtmaster));
+      sgtindx = (struct sgtindex *) check_malloc ((sgtmast->globnp)*sizeof(struct sgtindex));
+      reed(sgtfpar->zfdr,sgtindx,(sgtmast->globnp)*sizeof(struct sgtindex));
+
+      sgtfpar->head_off = (off_t)(sizeof(struct sgtmaster)) + (off_t)((sgtmast->globnp)*sizeof(struct sgtindex));
+      }
+   else
+      {
+      reed(sgtfpar->zfdr,&tmast,sizeof(struct sgtmaster));
+
+      eflag = 0;
+      if(tmast.geoproj != sgtmast->geoproj)
+         eflag = -1;
+      if(tmast.modellon > sgtmast->modellon + 0.001 || tmast.modellon < sgtmast->modellon - 0.001)
+         eflag = -1;
+      if(tmast.modellat > sgtmast->modellat + 0.001 || tmast.modellat < sgtmast->modellat - 0.001)
+         eflag = -1;
+      if(tmast.modelrot > sgtmast->modelrot + 0.001 || tmast.modelrot < sgtmast->modelrot - 0.001)
+         eflag = -1;
+      if(tmast.xshift > sgtmast->xshift + 0.001 || tmast.xshift < sgtmast->xshift - 0.001)
+         eflag = -1;
+      if(tmast.yshift > sgtmast->yshift + 0.001 || tmast.yshift < sgtmast->yshift - 0.001)
+         eflag = -1;
+      if(tmast.globnp != sgtmast->globnp)
+         eflag = -1;
+      if(tmast.localnp != sgtmast->localnp)
+         eflag = -1;
+      if(tmast.nt != sgtmast->nt)
+         eflag = -1;
+
+      if(eflag != 0)
+         {
+	 fprintf(stderr,"sgtmaster inconsistency in zfile= %s, exiting ...\n",sgtfpar->zfile);
+	 exit(-1);
+	 }
+
+      tindx = (struct sgtindex *) check_malloc ((tmast.globnp)*sizeof(struct sgtindex));
+      reed(sgtfpar->zfdr,tindx,(tmast.globnp)*sizeof(struct sgtindex));
+
+      for(ip=0;ip<sgtmast->globnp;ip++)
+         {
+         if(tindx[ip].indx != sgtindx[ip].indx)
+            eflag = -1;
+	 }
+
+      if(eflag != 0)
+         {
+	 fprintf(stderr,"sgtindex inconsistency in zfile= %s, exiting ...\n",sgtfpar->zfile);
+	 exit(-1);
+	 }
+
+      free(tindx);
+      }
+
+   sgtfpar->zcur_off = sgtfpar->head_off;
+   rflag = 1;
+   }
+
+return(sgtindx);
+}
+
+void find_sgt(struct sgtparams *sgtpar,struct sgtmaster *sgtmast,struct sgtindex *sgtindx,struct sgtindex *eqindx,struct sgtindex *statindx,float *maxd,float *fwt)
+{
+float xx, yy, zz, rng, zdp, rexact, zexact, del, delta[4];
+float sum, mind, xwt;
+int ip, i;
+int p0, p1, p2, p3;
+int zflag;
+
+/* first see if there is an exact match */
+
+ip = 0;
+while(eqindx->indx > sgtindx[ip].indx && ip < (sgtmast->globnp)-1)
+   ip++;
+
+if(eqindx->indx == sgtindx[ip].indx)   /* great, exact match, this will be easy */
+   {
+   sgtpar->nsgt = 1;
+   sgtpar->indx[0] = sgtindx[ip].indx;
+   sgtpar->wt[0] = 1.0;
+
+   /*
+   fprintf(stderr,"SGT EXACT: eqindx= %Ld ip= %d\n",eqindx->indx,ip);
+   */
+   }
+else  /* more difficult, find up to 4 SGT that bracket point in range and depth */
+   {
+   sgtpar->nsgt = 0;
+   p0 = -1; p1 = -1; p2 = -1; p3 = -1;
+
+   delta[0] = 1.0e+15;
+   delta[1] = 1.0e+15;
+   delta[2] = 1.0e+15;
+   delta[3] = 1.0e+15;
+
+   xx = (eqindx->xsgt - statindx->xsgt);
+   yy = (eqindx->ysgt - statindx->ysgt);
+   rexact = xx*xx + yy*yy;
+   zexact = (eqindx->zsgt - statindx->zsgt);
+
+   for(ip=0;ip<sgtmast->globnp;ip++)
+      {
+      xx = (sgtindx[ip].xsgt - statindx->xsgt);
+      yy = (sgtindx[ip].ysgt - statindx->ysgt);
+      rng = xx*xx + yy*yy;
+      zdp = (sgtindx[ip].zsgt - statindx->zsgt);
+
+      xx = (sgtindx[ip].xsgt - eqindx->xsgt);
+      yy = (sgtindx[ip].ysgt - eqindx->ysgt);
+      zz = (sgtindx[ip].zsgt - eqindx->zsgt);
+      del = xx*xx + yy*yy + zz*zz;
+
+      if(rng <= rexact && zdp <= zexact)
+         {
+	 if(p0 < 0)   /* first time here */
+	    {
+	    p0 = sgtpar->nsgt;
+	    sgtpar->nsgt = sgtpar->nsgt + 1;
+	    }
+
+	 if(del < delta[p0])
+	    {
+	    delta[p0] = del;
+	    sgtpar->indx[p0] = sgtindx[ip].indx;
+	    sgtpar->wt[p0] = sqrt(del);
+	    }
+	 }
+      else if(rng > rexact && zdp <= zexact)
+         {
+	 if(p1 < 0)   /* first time here */
+	    {
+	    p1 = sgtpar->nsgt;
+	    sgtpar->nsgt = sgtpar->nsgt + 1;
+	    }
+
+	 if(del < delta[p1])
+	    {
+	    delta[p1] = del;
+	    sgtpar->indx[p1] = sgtindx[ip].indx;
+	    sgtpar->wt[p1] = sqrt(del);
+	    }
+	 }
+      else if(rng <= rexact && zdp > zexact)
+         {
+	 if(p2 < 0)   /* first time here */
+	    {
+	    p2 = sgtpar->nsgt;
+	    sgtpar->nsgt = sgtpar->nsgt + 1;
+	    }
+
+	 if(del < delta[p2])
+	    {
+	    delta[p2] = del;
+	    sgtpar->indx[p2] = sgtindx[ip].indx;
+	    sgtpar->wt[p2] = sqrt(del);
+	    }
+	 }
+      else /* should be (rng > rexact && zdp > zexact)  */
+         {
+	 if(p3 < 0)   /* first time here */
+	    {
+	    p3 = sgtpar->nsgt;
+	    sgtpar->nsgt = sgtpar->nsgt + 1;
+	    }
+
+	 if(del < delta[p3])
+	    {
+	    delta[p3] = del;
+	    sgtpar->indx[p3] = sgtindx[ip].indx;
+	    sgtpar->wt[p3] = sqrt(del);
+	    }
+	 }
+      }
+
+   zflag = -1;
+   for(i=0;i<sgtpar->nsgt;i++)
+      {
+      if(sgtpar->wt[i] == 0.0)
+         zflag = i;
+      }
+
+   if(zflag >= 0)
+      {
+      for(i=0;i<sgtpar->nsgt;i++)
+         sgtpar->wt[i] = 0.0;
+
+      sgtpar->wt[zflag] = 1.0;
+      }
+   else
+      {
+      sum = 0.0;
+      for(i=0;i<sgtpar->nsgt;i++)
+         sum = sum + 1.0/sgtpar->wt[i];
+
+      sum = 1.0/sum;
+      for(i=0;i<sgtpar->nsgt;i++)
+         sgtpar->wt[i] = sum/sgtpar->wt[i];
+      }
+
+   mind = 1.0e+15;
+   for(i=0;i<sgtpar->nsgt;i++)
+      {
+      if(delta[i] < mind)
+	 {
+         mind = delta[i];
+	 xwt = sgtpar->wt[i];
+	 }
+      }
+   if(mind > *maxd)
+      {
+      *maxd = mind;
+      *fwt = xwt;
+      }
+
+   /*
+   for(i=0;i<sgtpar->nsgt;i++)
+      {
+      if(delta[i] > *maxd)
+         *maxd = delta[i];
+      }
+      */
+
+   if(sgtpar->nsgt < 4)
+      fprintf(stderr,"*** tried to find 4 SGT, but only found %d: eq.zsgt= %d\n",sgtpar->nsgt,eqindx->zsgt);
+
+      /*
+      {
+for(i=0;i<sgtpar->nsgt;i++)
+   {
+   fprintf(stderr,"%d) sgti=%Ld eqi=%Ld delta=%13.5e maxd=%13.5e\n",i,sgtpar->indx[i],eqindx->indx,delta[i],*maxd);
+   }
+   exit(-1);
+   }
+*/
+
+   }
+}
+
+void read_sgt(struct sgtfileparams *sgtfpar,struct sgtmaster *sgtmast,struct sgtindex *sgtindx,struct sgtheader *sgthead,float *sgtbuf)
+{
+int ip;
+float *sgtptr;
+
+float xmom = 0.0;
+float ymom = 0.0;
+
+for(ip=0;ip<18*(sgtmast->globnp)*(sgtmast->nt);ip++)
+   sgtbuf[ip] = 0.0;
+
+if(sgtfpar->xfile[0] != '\0')
+   {
+   lseek(sgtfpar->xfdr,(sgtfpar->head_off),SEEK_SET);
+
+   for(ip=0;ip<(sgtmast->globnp);ip++)
+      {
+      sgtptr = sgtbuf + ip*18*(sgtmast->nt);
+      reed(sgtfpar->xfdr,&sgthead[ip],sizeof(struct sgtheader));
+      reed(sgtfpar->xfdr,sgtptr,6*(sgtmast->nt)*sizeof(float));
+      }
+   close(sgtfpar->xfdr);
+
+   xmom = sgthead[0].xmom;
+   }
+
+if(sgtfpar->yfile[0] != '\0')
+   {
+   lseek(sgtfpar->yfdr,(sgtfpar->head_off),SEEK_SET);
+
+   for(ip=0;ip<(sgtmast->globnp);ip++)
+      {
+      sgtptr = sgtbuf + (ip*18 + 6)*(sgtmast->nt);
+      reed(sgtfpar->yfdr,&sgthead[ip],sizeof(struct sgtheader));
+      reed(sgtfpar->yfdr,sgtptr,6*(sgtmast->nt)*sizeof(float));
+
+      sgthead[ip].xmom = xmom;
+      }
+   close(sgtfpar->yfdr);
+
+   ymom = sgthead[0].ymom;
+   }
+
+if(sgtfpar->zfile[0] != '\0')
+   {
+   lseek(sgtfpar->zfdr,(sgtfpar->head_off),SEEK_SET);
+
+   for(ip=0;ip<(sgtmast->globnp);ip++)
+      {
+      sgtptr = sgtbuf + (ip*18 + 12)*(sgtmast->nt);
+      reed(sgtfpar->zfdr,&sgthead[ip],sizeof(struct sgtheader));
+      reed(sgtfpar->zfdr,sgtptr,6*(sgtmast->nt)*sizeof(float));
+
+      sgthead[ip].xmom = xmom;
+      sgthead[ip].ymom = ymom;
+      }
+   close(sgtfpar->zfdr);
+   }
+}
+
+void sum_sgt(float *seis,int ntout,float *gfmech,struct sgtparams *sgtpar,struct sgtheader *sgthead,int ntsum,float *rupt,float *tstart,struct mechparam mp)
+{
+int ig, ip, it, im;
+float pbar, maxgft, backt0, t0[4], gft[4];
+float *sptr, *gfptr;
+
+pbar = 0.0;
+for(ig=0;ig<sgtpar->nsgt;ig++)
+   {
+   ip = sgtpar->master_ip[ig];
+   pbar = pbar + sqrt(sgthead[ip].rho/sgthead[ip].mu);  /* slowness */
+   }
+pbar = pbar/(float)(sgtpar->nsgt);
+
+maxgft = -1.0e+15;
+for(ig=0;ig<sgtpar->nsgt;ig++)
+   {
+   ip = sgtpar->master_ip[ig];
+   gft[ig] = pbar*sgthead[ip].cdist;
+   if(gft[ig] > maxgft)
+      maxgft = gft[ig];
+   }
+
+backt0 = 0.0;
+for(ig=0;ig<sgtpar->nsgt;ig++)
+   {
+   ip = sgtpar->master_ip[ig];
+   t0[ig] = maxgft - gft[ig];
+   backt0 = backt0 - t0[ig]*sgtpar->wt[ig];
+   t0[ig] = t0[ig] + sgthead[ip].tst;
+   }
+backt0 = backt0 + *rupt - *tstart;
+
+for(im=0;im<mp.nmech;im++)
+   {
+   sptr = seis + 3*im*ntout;
+   gfptr = gfmech + 12*im*ntsum;
+   timeshift_sgt(sptr,ntout,gfptr,sgthead,ntsum,t0,&backt0,sgtpar->nsgt);
+   }
+}
+
+void timeshift_sgt(float *seis,int ntout,float *gf,struct sgtheader *gfh,int ntsum,float *t0,float *bt0,int nsgt)
+{
+struct complex *gc0, *gc1, *gc2;
+float *gf0, *gf1, *gf2, *sv, *sn, *se, *gfv, *gfn, *gfe;
+float cosA, sinA, arg, fac, norm, tmpre, scale, tsh;
+int i, ig, tapst, it, nts3, nts6, nts9;
+int itshift, it0, nf2;
+
+int taplen = 10;
+float zap = 0.0;
+float half = 0.5;
+float one = 1.0;
+float two = 2.0;
+float pi = 3.141592654;
+
+sv = seis;
+sn = seis + ntout;
+se = seis + 2*ntout;
+
+for(ig=0;ig<nsgt;ig++)
+   {
+   gf0 = gf + 3*ig*ntsum;
+   gf1 = gf + 3*ig*ntsum + ntsum;
+   gf2 = gf + 3*ig*ntsum + 2*ntsum;
+
+   /* taper */
+
+   tapst = gfh[ig].nt - taplen;
+   arg = pi/(float)(taplen);
+   for(it=tapst+1;it<gfh[ig].nt;it++)
+      {
+      fac = half*(one + cos(arg*(it-tapst)));
+   
+      gf0[it] = fac*gf0[it];
+      gf1[it] = fac*gf1[it];
+      gf2[it] = fac*gf2[it];
+      }
+
+/* apply time shift */
+
+   tsh = t0[ig] + *bt0;
+   if(tsh >= 0.0)
+      itshift = (int)(tsh/gfh[ig].dt + 0.5);
+   else
+      itshift = (int)(tsh/gfh[ig].dt - 0.5);
+
+   it0 = gfh[ig].nt + itshift;
+
+   if(it0 > ntsum)
+      it0 = ntsum;
+
+   if(it0 > ntout)
+      it0 = ntout;
+
+   if(itshift < 0)
+      {
+      for(i=0;i<it0;i++)
+         {
+	 sv[i] = sv[i] + gf0[i-itshift];
+	 sn[i] = sn[i] + gf1[i-itshift];
+	 se[i] = se[i] + gf2[i-itshift];
+	 }
+      }
+   else
+      {
+      for(i=it0-1;i>=itshift;i--)
+         {
+	 sv[i] = sv[i] + gf0[i-itshift];
+	 sn[i] = sn[i] + gf1[i-itshift];
+	 se[i] = se[i] + gf2[i-itshift];
+	 }
+      }
+   }
+}
+
+void mech_sgt(float *gfmech,float *sgtbuf,struct sgtheader *sgthead,struct sgtparams *sgtpar,int nts,struct mechparam mp,float *scl)
+{
+struct sgtheader *sgtheadptr;
+float *sgtbufptr;
+float *zdd, *rdd, *zds, *rds, *tds, *zss, *rss, *tss;
+float *axx, *ayy, *azz, *axy, *axz, *ayz;
+float *bxx, *byy, *bzz, *bxy, *bxz, *byz;
+float *cxx, *cyy, *czz, *cxy, *cxz, *cyz;
+float *gfn, *gfe, *gfv, *gfmptr;
+float f1, f2, f3, f4, f5;
+float cxS, sxS, cxD, sxD, cx2D, sx2D, cxL, sxL;
+float cxT, sxT, cx2T, sx2T;
+float arg, cosA, sinA, rad, tan, scale;
+float xamp, yamp, zamp, sx, sy, sz;
+float mxx, myy, mzz, mxy, mxz, myz;
+float sum, rake;
+float u1, u2, u3, vx, vy, vz, l2m;
+float us, ud, ux, uy, uz;
+int it, ig, im;
+
+float half = 0.5;
+float two = 2.0;
+float rperd = 0.017453293;
+
+arg = (mp.dip)*rperd;
+cxD = cos(arg);
+sxD = sin(arg);
+
+cx2D = cxD*cxD - sxD*sxD;
+sx2D = two*sxD*cxD;
+
+for(im=0;im<mp.nmech;im++)
+   {
+   u1 = u2 = u3 = 0;
+   if(mp.flag[im] == U1FLAG)
+      u1 = 1;
+   else if(mp.flag[im] == U2FLAG)
+      u2 = 1;
+   else if(mp.flag[im] == U3FLAG)
+      u3 = 1;
+
+   gfmptr = gfmech + im*12*nts;
+   zapit(gfmptr,12*nts);
+
+   arg = (mp.rak)*rperd;
+   cxL = cos(arg);
+   sxL = sin(arg);
+
+   sum = 0.0;
+   for(ig=0;ig<(sgtpar->nsgt);ig++)
+      {
+      sgtheadptr = sgthead + sgtpar->master_ip[ig];
+      sgtbufptr = sgtbuf + 18*sgtheadptr->nt*sgtpar->master_ip[ig];
+
+      arg = (mp.stk - sgtheadptr->xazim)*rperd;
+      cxT = cos(arg);
+      sxT = sin(arg);
+
+      vx = -sxD*sxT;
+      vy =  sxD*cxT;
+      vz = -cxD;
+
+      us = u1*cxL - u2*sxL;
+      ud = u1*sxL + u2*cxL;
+
+      ux = -(u3*sxD - ud*cxD)*sxT + us*cxT;
+      uy =  (u3*sxD - ud*cxD)*cxT + us*sxT;
+      uz = -(u3*cxD + ud*sxD);
+
+      l2m = sgtheadptr->lam + two*sgtheadptr->mu;
+
+      mxx = l2m*vx*ux + (sgtheadptr->lam)*vy*uy + (sgtheadptr->lam)*vz*uz;
+      myy = (sgtheadptr->lam)*vx*ux + l2m*vy*uy + (sgtheadptr->lam)*vz*uz;
+      mzz = (sgtheadptr->lam)*vx*ux + (sgtheadptr->lam)*vy*uy + l2m*vz*uz;
+      mxy = (sgtheadptr->mu)*(vx*uy + vy*ux);
+      mxz = (sgtheadptr->mu)*(vx*uz + vz*ux);
+      myz = (sgtheadptr->mu)*(vy*uz + vz*uy);
+
+      arg = sgtheadptr->xazim*rperd;
+      cosA = cos(arg);
+      sinA = sin(arg);
+
+      gfv = gfmptr + 3*ig*nts;
+      gfn = gfmptr + 3*ig*nts + nts;
+      gfe = gfmptr + 3*ig*nts + 2*nts;
+
+      axx = sgtbufptr;
+      ayy = sgtbufptr + (sgtheadptr->nt);
+      azz = sgtbufptr + 2*(sgtheadptr->nt);
+      axy = sgtbufptr + 3*(sgtheadptr->nt);
+      axz = sgtbufptr + 4*(sgtheadptr->nt);
+      ayz = sgtbufptr + 5*(sgtheadptr->nt);
+      bxx = sgtbufptr + 6*(sgtheadptr->nt);
+      byy = sgtbufptr + 7*(sgtheadptr->nt);
+      bzz = sgtbufptr + 8*(sgtheadptr->nt);
+      bxy = sgtbufptr + 9*(sgtheadptr->nt);
+      bxz = sgtbufptr + 10*(sgtheadptr->nt);
+      byz = sgtbufptr + 11*(sgtheadptr->nt);
+      cxx = sgtbufptr + 12*(sgtheadptr->nt);
+      cyy = sgtbufptr + 13*(sgtheadptr->nt);
+      czz = sgtbufptr + 14*(sgtheadptr->nt);
+      cxy = sgtbufptr + 15*(sgtheadptr->nt);
+      cxz = sgtbufptr + 16*(sgtheadptr->nt);
+      cyz = sgtbufptr + 17*(sgtheadptr->nt);
+
+      sum = sum + (*scl)*(sgtheadptr->mu)*(sgtpar->wt[ig]);
+
+/*
+fprintf(stderr,"area= %13.5e mu= %13.5e\n",(*scl),(sgtheadptr->mu));
+*/
+
+      xamp = 0.0;
+      if(sgtheadptr->xmom > 0.0)
+         xamp = (*scl)*(sgtpar->wt[ig])/(sgtheadptr->xmom);
+	 
+      yamp = 0.0;
+      if(sgtheadptr->ymom > 0.0)
+         yamp = (*scl)*(sgtpar->wt[ig])/(sgtheadptr->ymom);
+	 
+      zamp = 0.0;
+      if(sgtheadptr->zmom > 0.0)
+         zamp = (*scl)*(sgtpar->wt[ig])/(sgtheadptr->zmom);
+
+      for(it=0;it<sgtheadptr->nt;it++)
+         {
+         sx = xamp*(axx[it]*mxx + ayy[it]*myy + azz[it]*mzz
+               + axy[it]*mxy + axz[it]*mxz + ayz[it]*myz);
+
+         sy = yamp*(bxx[it]*mxx + byy[it]*myy + bzz[it]*mzz
+               + bxy[it]*mxy + bxz[it]*mxz + byz[it]*myz);
+
+         sz = zamp*(cxx[it]*mxx + cyy[it]*myy + czz[it]*mzz
+               + cxy[it]*mxy + cxz[it]*mxz + cyz[it]*myz);
+
+         gfe[it] = sx*sinA + sy*cosA;
+         gfn[it] = sx*cosA - sy*sinA;
+         gfv[it] = -sz;
+         }
+      }
+   }
+
+*scl = sum;  /* scl now contains the moment released for this point source */
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/srf_rupm.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/srf_rupm.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/srf_rupm.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,145 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+void get_srfpars(struct standrupformat *srf,int off, int ip,float *rt,float *vs,float *stk,float *dip,float *rak,struct mechparam *mpar)
+{
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+prect_ptr = &(srf->srf_prect);
+prseg_ptr = prect_ptr->prectseg;
+apnts_ptr = &(srf->srf_apnts);
+apval_ptr = apnts_ptr->apntvals + off;
+
+mpar->nmech = 0;
+mpar->flag[0] = 0;
+mpar->flag[1] = 0;
+mpar->flag[2] = 0;
+
+if(apval_ptr[ip].nt1 > 0)
+   {
+   mpar->flag[mpar->nmech] = U1FLAG;
+   mpar->nmech = mpar->nmech + 1;
+   }
+if(apval_ptr[ip].nt2 > 0)
+   {
+   mpar->flag[mpar->nmech] = U2FLAG;
+   mpar->nmech = mpar->nmech + 1;
+   }
+if(apval_ptr[ip].nt3 > 0)
+   {
+   mpar->flag[mpar->nmech] = U3FLAG;
+   mpar->nmech = mpar->nmech + 1;
+   }
+
+*vs = sqrt(apval_ptr[ip].slip1*apval_ptr[ip].slip1
+         + apval_ptr[ip].slip2*apval_ptr[ip].slip2
+	 + apval_ptr[ip].slip3*apval_ptr[ip].slip3);
+*stk = apval_ptr[ip].stk;
+*dip = apval_ptr[ip].dip;
+*rak = apval_ptr[ip].rake;
+*rt = apval_ptr[ip].tinit;
+}
+
+void srf_stf(struct standrupformat *srf,int off,int ip,float *s,float *u,float *stf,int nt,float *dt,struct mechparam mp,float *space)
+{
+FILE *fpw;
+int it, nstf, im;
+float sum, *sptr, *uptr;
+
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+float fnt;
+int resamp, ntpad, ntrsmp, gnt;
+
+float tol = 1.0e-02;
+
+float pratio_tol, mratio_tol;
+float ratio_tol = 0.00001;
+
+pratio_tol = 1.0 + ratio_tol;
+mratio_tol = 1.0 - ratio_tol;
+
+prect_ptr = &(srf->srf_prect);
+prseg_ptr = prect_ptr->prectseg;
+apnts_ptr = &(srf->srf_apnts);
+apval_ptr = apnts_ptr->apntvals + off;
+
+zapit(stf,nt);
+
+/*
+if(apval_ptr[ip].nt1 == 0)
+   return;
+*/
+
+/* for now, simply copy STF
+   should add option to resample to dtout
+   */
+
+for(im=0;im<mp.nmech;im++)
+   {
+   if(mp.flag[im] == U1FLAG)
+      {
+      nstf = apval_ptr[ip].nt1;
+      sptr = apval_ptr[ip].stf1;
+      }
+   else if(mp.flag[im] == U2FLAG)
+      {
+      nstf = apval_ptr[ip].nt2;
+      sptr = apval_ptr[ip].stf2;
+      }
+   else if(mp.flag[im] == U3FLAG)
+      {
+      nstf = apval_ptr[ip].nt3;
+      sptr = apval_ptr[ip].stf3;
+      }
+
+/* add factor of dt to prenormalize convolution */
+   for(it=0;it<nstf;it++)
+      stf[it] = (*dt)*sptr[it];
+
+/* resample if needed */
+   if((*dt)/apval_ptr[ip].dt > pratio_tol || (*dt)/apval_ptr[ip].dt < mratio_tol)
+      {
+      /*
+      fprintf(stderr,"*** RESAMPLED diff= %13.5e ratio= %13.5e\n",(*dt)-apval_ptr[ip].dt,(*dt)/apval_ptr[ip].dt);
+      */
+
+      ntpad = 2*nstf;
+      fnt = ntpad*apval_ptr[ip].dt/(*dt);
+      gnt = (int)(fnt + 0.5);
+
+      while(nt_tol(fnt,gnt) > tol)
+         {
+         ntpad++;
+         fnt = ntpad*apval_ptr[ip].dt/(*dt);
+         gnt = (int)(fnt + 0.5);
+         }
+
+      ntrsmp = (int)(fnt);
+      if(ntrsmp > nt)
+         {
+         fprintf(stderr,"*** resampled nt > ntsum, exiting...\n");
+         exit(-1);
+         }
+
+      if((*dt) < apval_ptr[ip].dt)
+         resamp = 1;
+      else
+         resamp = -1;
+
+      resample(stf,nstf,&apval_ptr[ip].dt,resamp,ntpad,ntrsmp,dt,space);
+
+      nstf = ntrsmp;
+      }
+
+   uptr = u + 3*im*nt;
+   do_cnvlv(s,uptr,nt,stf,nstf);
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/srf_rupmOLD.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/srf_rupmOLD.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/srf_rupmOLD.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,99 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+void get_srfpars(struct standrupformat *srf,int i,int j,float *rt,float *vs,float *rk,int nseg,int off,struct mechparam *mpar)
+{
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+int ip;
+
+prect_ptr = &(srf->srf_prect);
+prseg_ptr = prect_ptr->prectseg;
+apnts_ptr = &(srf->srf_apnts);
+apval_ptr = apnts_ptr->apntvals + off;
+
+ip = i + j*(prseg_ptr[nseg].nstk);
+
+mpar->nmech = 0;
+mpar->flag[0] = 0;
+mpar->flag[1] = 0;
+mpar->flag[2] = 0;
+
+if(apval_ptr[ip].nt1 > 0)
+   {
+   mpar->flag[mpar->nmech] = U1FLAG;
+   mpar->nmech = mpar->nmech + 1;
+   }
+if(apval_ptr[ip].nt2 > 0)
+   {
+   mpar->flag[mpar->nmech] = U2FLAG;
+   mpar->nmech = mpar->nmech + 1;
+   }
+if(apval_ptr[ip].nt3 > 0)
+   {
+   mpar->flag[mpar->nmech] = U3FLAG;
+   mpar->nmech = mpar->nmech + 1;
+   }
+
+*vs = sqrt(apval_ptr[ip].slip1*apval_ptr[ip].slip1
+         + apval_ptr[ip].slip2*apval_ptr[ip].slip2
+	 + apval_ptr[ip].slip3*apval_ptr[ip].slip3);
+*rk = apval_ptr[ip].rake;
+*rt = apval_ptr[ip].tinit;
+}
+
+void srf_stf(struct standrupformat *srf,int i,int j,float *s,float *u,float *stf,int nt,float *dt,int nseg,int off,struct mechparam mp)
+{
+FILE *fpw;
+int ip, it, nstf, im;
+float sum, *sptr, *uptr;
+struct srf_planerectangle *prect_ptr;
+struct srf_prectsegments *prseg_ptr;
+struct srf_allpoints *apnts_ptr;
+struct srf_apointvalues *apval_ptr;
+
+prect_ptr = &(srf->srf_prect);
+prseg_ptr = prect_ptr->prectseg;
+apnts_ptr = &(srf->srf_apnts);
+apval_ptr = apnts_ptr->apntvals + off;
+
+zapit(stf,nt);
+
+ip = i + j*(prseg_ptr[nseg].nstk);
+
+if(apval_ptr[ip].nt1 == 0)
+   return;
+
+/* for now, simply copy STF
+   should add option to resample to dtout
+   */
+
+for(im=0;im<mp.nmech;im++)
+   {
+   if(mp.flag[im] == U1FLAG)
+      {
+      nstf = apval_ptr[ip].nt1;
+      sptr = apval_ptr[ip].stf1;
+      }
+   else if(mp.flag[im] == U2FLAG)
+      {
+      nstf = apval_ptr[ip].nt2;
+      sptr = apval_ptr[ip].stf2;
+      }
+   else if(mp.flag[im] == U3FLAG)
+      {
+      nstf = apval_ptr[ip].nt3;
+      sptr = apval_ptr[ip].stf3;
+      }
+
+/* add factor of dt to prenormalize convolution */
+   for(it=0;it<nstf;it++)
+      stf[it] = (*dt)*sptr[it];
+
+   uptr = u + 3*im*nt;
+   do_cnvlv(s,uptr,nt,stf,nstf);
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/stf_subs.c
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/stf_subs.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/stf_subs.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,52 @@
+#include "include.h"
+#include "structure.h"
+#include "function.h"
+
+void do_cnvlv(float *s,float *u,int nt,float *stf,int nstf)
+{
+float *sv, *sn, *se, *uv, *un, *ue;
+int it, k, kend;
+
+sv = s;
+sn = s + nt;
+se = s + 2*nt;
+
+uv = u;
+un = u + nt;
+ue = u + 2*nt;
+
+for(it=0;it<nt;it++)
+   {
+   kend = it + 1;
+   if(kend > nstf)
+      kend = nstf;
+
+   for(k=0;k<kend;k++)
+      {
+      sv[it] = sv[it] + stf[k]*uv[it-k];
+      sn[it] = sn[it] + stf[k]*un[it-k];
+      se[it] = se[it] + stf[k]*ue[it-k];
+      }
+   }
+}
+
+void sum_nostf(float *s,float *u,float *slip,int nt)
+{
+float *sv, *sn, *se, *uv, *un, *ue;
+int it;
+
+sv = s;
+sn = s + nt;
+se = s + 2*nt;
+
+uv = u;
+un = u + nt;
+ue = u + 2*nt;
+
+for(it=0;it<nt;it++)
+   {
+   sv[it] = sv[it] + (*slip)*uv[it];
+   sn[it] = sn[it] + (*slip)*un[it];
+   se[it] = se[it] + (*slip)*ue[it];
+   }
+}

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/structure.h
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/structure.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/structure.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,266 @@
+struct complex
+   {
+   float re;
+   float im;
+   };
+
+#ifndef STRUCT_VELMODEL
+#define STRUCT_VELMODEL
+
+struct velmodel
+   {
+   int nlay;
+   float *vp;
+   double *vs;    /* need double for ray tracing to get ruptime */
+   float *den;
+   float *th;
+   float *dep;
+   float *mu;     /* in CMS units */
+   double *invb2; /* need double for ray tracing to get ruptime */
+   };
+
+#endif
+
+struct mechparam
+   {
+   int nmech;
+   int flag[3];
+   float stk;
+   float dip;
+   float rak;
+   };
+
+struct gfheader
+   {
+   int read_flag;
+   int nt;
+   int id;
+   int ir;
+   float olon;
+   float olat;
+   float slon;
+   float slat;
+   float dt;
+   float north;
+   float east;
+   float rng;
+   float dep;
+   float xazim;
+   float tst;
+   float lam;
+   float mu;
+   float rho;
+   float gft;
+   float mom;
+   float xmom;
+   float ymom;
+   float zmom;
+   float wt;
+   };
+
+struct sgtfileparams
+   {
+   int xfdr;
+   int yfdr;
+   int zfdr;
+   char xfile[256];
+   char yfile[256];
+   char zfile[256];
+   off_t head_off;
+   off_t xcur_off;
+   off_t ycur_off;
+   off_t zcur_off;
+   };
+
+struct sgtparams
+   {
+   int nsgt;
+   long long indx[4];
+   float wt[4];
+   int master_ip[4];
+   };
+
+struct sgtmaster
+   {
+   int geoproj;     /* =0: RWG local flat earth; =1: RWG great circle arcs; =2: UTM */
+   float modellon;  /* longitude of geographic origin */
+   float modellat;  /* latitude of geographic origin */
+   float modelrot;  /* rotation of y-axis from south (clockwise positive)   */
+   float xshift;    /* xshift of cartesian origin from geographic origin */
+   float yshift;    /* yshift of cartesian origin from geographic origin */
+   int globnp;      /* total number of SGT locations (entire model) */
+   int localnp;     /* local number of SGT locations (this file only) */
+   int nt;          /* number of time points                                */
+   };
+
+struct sgtindex   /* indices for all 'globnp' SGT locations */
+   {
+   long long indx; /* indx= xsgt*10000000 + ysgt*1000 + zsgt */
+   int xsgt;     /* x grid location */
+   int ysgt;     /* y grid location */
+   int zsgt;     /* z grid location */
+   float h;         /* grid spacing                                         */
+   };
+
+struct sgtheader    /* sgt header for v1.14 */
+   {
+   long long indx;  /* index of this SGT */
+   int geoproj;     /* =0: RWG local flat earth; =1: RWG great circle arcs; =2: UTM */
+   float modellon;  /* longitude of geographic origin */
+   float modellat;  /* latitude of geographic origin */
+   float modelrot;  /* rotation of y-axis from south (clockwise positive)   */
+   float xshift;    /* xshift of cartesian origin from geographic origin */
+   float yshift;    /* yshift of cartesian origin from geographic origin */
+   int nt;          /* number of time points                                */
+   float xazim;     /* azimuth of X-axis in FD model (clockwise from north) */
+   float dt;        /* time sampling                                        */
+   float tst;       /* start time of 1st point in GF                        */
+   float h;         /* grid spacing                                         */
+   float src_lat;   /* site latitude */
+   float src_lon;   /* site longitude */
+   float src_dep;   /* site depth */
+   int xsrc;        /* x grid location for source (station in recip. exp.)  */
+   int ysrc;        /* y grid location for source (station in recip. exp.)  */
+   int zsrc;        /* z grid location for source (station in recip. exp.)  */
+   float sgt_lat;   /* SGT location latitude */
+   float sgt_lon;   /* SGT location longitude */
+   float sgt_dep;   /* SGT location depth */
+   int xsgt;        /* x grid location for output (source in recip. exp.)   */
+   int ysgt;        /* y grid location for output (source in recip. exp.)   */
+   int zsgt;        /* z grid location for output (source in recip. exp.)   */
+   float cdist;     /* straight-line distance btw site and SGT location */
+   float lam;       /* lambda [in dyne/(cm*cm)] at output point             */
+   float mu;        /* rigidity [in dyne/(cm*cm)] at output point           */
+   float rho;       /* density [in gm/(cm*cm*cm)] at output point           */
+   float xmom;      /* moment strength of x-oriented force in this run      */
+   float ymom;      /* moment strength of y-oriented force in this run      */
+   float zmom;      /* moment strength of z-oriented force in this run      */
+   };
+
+struct gfparam
+   {
+   int flag3d;
+   int swap_flag;
+   int use_depdir;
+   int nc;
+   char gftype[16];
+   char gflocs[128];
+   char gftimes[128];
+   float rtol;
+   int ngfr;
+   int ngfd;
+   float *gfn;
+   float *gfe;
+   float *gfr;
+   float *gfd;
+   float *gft;
+   };
+
+struct beroza
+   {
+   int npstk;
+   int npdip;
+   int inc_stk;
+   int inc_dip;
+   int robstf;
+   float generic_risetime;
+   float generic_pulsedur;
+   float generic_t2;
+   float *as;
+   float *dd;
+   float *slip;
+   float *sv;
+   float *rupt;
+   float *rist;
+   float *tdur;
+   float *t2;
+   };
+
+struct okumura
+   {
+   int nstk;
+   int ndip;
+   float flen;
+   float fwid;
+   float dlen;
+   float dwid;
+   float shypo;
+   float dhypo;
+   float vrup;
+   float *as;
+   float *dd;
+   float *slip;
+   float *sv;
+   float *rist;
+   float *rupt;
+   };
+
+struct gene
+   {
+   int nstk;
+   int ndip;
+   float flen;
+   float fwid;
+   float dlen;
+   float dwid;
+   float shypo;
+   float dhypo;
+   float trise;
+   float tdel;
+   int maxtw;
+   float *as;
+   float *dd;
+   float *slip;
+   float *rake;
+   float *vrup;
+   int *nt;
+   float *swgt;
+   };
+
+struct rob
+   {
+   float elon;
+   float elat;
+   int nstk;
+   int ndip;
+   float flen;
+   float fwid;
+   float dlen;
+   float dwid;
+   float stk;
+   float dip;
+   float dtop;
+   float shyp;
+   float dhyp;
+   float *as;
+   float *dd;
+   float *slip;
+   float *rake;
+   float *trise;
+   float *vrup;
+   float *tsfac;
+   };
+
+struct geoprojection
+   {
+   int geoproj;
+   float modellon;
+   float modellat;
+   float modelrot;
+   float xshift;
+   float yshift;
+   int center_origin;
+   double rperd;
+   float erad;
+   float fc;
+   float g2;
+   float radc;
+   float cosR;
+   float sinR;
+   float kmlon;
+   float kmlat;
+   double g0;
+   double b0;
+   double amat[9];
+   double ainv[9];
+   };

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/structureOLD.h
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/structureOLD.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/structureOLD.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,157 @@
+struct complex
+   {
+   float re;
+   float im;
+   };
+
+struct velmodel
+   {
+   int nlay;
+   float *vp;
+   double *vs;    /* need double for ray tracing to get ruptime */
+   float *den;
+   float *th;
+   float *dep;
+   float *mu;     /* in CMS units */
+   double *invb2; /* need double for ray tracing to get ruptime */
+   };
+
+struct mechparam
+   {
+   int nmech;
+   int flag[3];
+   float stk;
+   float dip;
+   float rak;
+   };
+
+struct gfheader
+   {
+   int read_flag;
+   int nt;
+   int id;
+   int ir;
+   float olon;
+   float olat;
+   float slon;
+   float slat;
+   float dt;
+   float north;
+   float east;
+   float rng;
+   float dep;
+   float xazim;
+   float tst;
+   float lam;
+   float mu;
+   float rho;
+   float gft;
+   float mom;
+   float xmom;
+   float ymom;
+   float zmom;
+   float wt;
+   };
+
+struct gfparam
+   {
+   int flag3d;
+   int swap_flag;
+   int nc;
+   char gftype[16];
+   char gflocs[128];
+   char gftimes[128];
+   float rtol;
+   int ngfr;
+   int ngfd;
+   float *gfn;
+   float *gfe;
+   float *gfr;
+   float *gfd;
+   float *gft;
+   };
+
+struct beroza
+   {
+   int npstk;
+   int npdip;
+   int inc_stk;
+   int inc_dip;
+   int robstf;
+   float generic_risetime;
+   float generic_pulsedur;
+   float generic_t2;
+   float *as;
+   float *dd;
+   float *slip;
+   float *sv;
+   float *rupt;
+   float *rist;
+   float *tdur;
+   float *t2;
+   };
+
+struct okumura
+   {
+   int nstk;
+   int ndip;
+   float flen;
+   float fwid;
+   float dlen;
+   float dwid;
+   float shypo;
+   float dhypo;
+   float vrup;
+   float *as;
+   float *dd;
+   float *slip;
+   float *sv;
+   float *rist;
+   float *rupt;
+   };
+
+struct gene
+   {
+   int nstk;
+   int ndip;
+   float flen;
+   float fwid;
+   float dlen;
+   float dwid;
+   float shypo;
+   float dhypo;
+   float trise;
+   float tdel;
+   int maxtw;
+   float *as;
+   float *dd;
+   float *slip;
+   float *rake;
+   float *vrup;
+   int *nt;
+   float *swgt;
+   };
+
+struct rob
+   {
+   float elon;
+   float elat;
+   int nstk;
+   int ndip;
+   float flen;
+   float fwid;
+   float dlen;
+   float dwid;
+   float stk;
+   float dip;
+   float dtop;
+   float shyp;
+   float dhyp;
+   float *as;
+   float *dd;
+   float *slip;
+   float *rake;
+   float *trise;
+   float *vrup;
+   float *tsfac;
+   };

Added: SwiftApps/Cybershake/app/post/JBSim3d/src/structureOLD2.h
===================================================================
--- SwiftApps/Cybershake/app/post/JBSim3d/src/structureOLD2.h	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/JBSim3d/src/structureOLD2.h	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,254 @@
+struct velmodel
+   {
+   int nlay;
+   double *vs;
+   double *invb2;
+   float *th;
+   };
+
+struct complex
+   {
+   float re;
+   float im;
+   };
+
+struct gfheader
+   {
+   int read_flag;
+   int nt;
+   int id;
+   int ir;
+   float olon;
+   float olat;
+   float slon;
+   float slat;
+   float dt;
+   float north;
+   float east;
+   float rng;
+   float dep;
+   float xazim;
+   float tst;
+   float lam;
+   float mu;
+   float rho;
+   float gft;
+   float mom;
+   float xmom;
+   float ymom;
+   float zmom;
+   float wt;
+   };
+
+struct gfparam
+   {
+   int flag3d;
+   int nc;
+   char gftype[16];
+   char gflocs[128];
+   char gftimes[128];
+   float rtol;
+   int ngfr;
+   int ngfd;
+   float *gfn;
+   float *gfe;
+   float *gfr;
+   float *gfd;
+   float *gft;
+   };
+
+struct beroza
+   {
+   int npstk;
+   int npdip;
+   int inc_stk;
+   int inc_dip;
+   int robstf;
+   float generic_risetime;
+   float generic_pulsedur;
+   float generic_t2;
+   float *as;
+   float *dd;
+   float *slip;
+   float *sv;
+   float *rupt;
+   float *rist;
+   float *tdur;
+   float *t2;
+   };
+
+struct okumura
+   {
+   int nstk;
+   int ndip;
+   float flen;
+   float fwid;
+   float dlen;
+   float dwid;
+   float shypo;
+   float dhypo;
+   float vrup;
+   float *as;
+   float *dd;
+   float *slip;
+   float *sv;
+   float *rist;
+   float *rupt;
+   };
+
+struct gene
+   {
+   int nstk;
+   int ndip;
+   float flen;
+   float fwid;
+   float dlen;
+   float dwid;
+   float shypo;
+   float dhypo;
+   float trise;
+   float tdel;
+   int maxtw;
+   float *as;
+   float *dd;
+   float *slip;
+   float *rake;
+   float *vrup;
+   int *nt;
+   float *swgt;
+   };
+
+struct rob
+   {
+   float elon;
+   float elat;
+   int nstk;
+   int ndip;
+   float flen;
+   float fwid;
+   float dlen;
+   float dwid;
+   float stk;
+   float dip;
+   float dtop;
+   float shyp;
+   float dhyp;
+   float *as;
+   float *dd;
+   float *slip;
+   float *rake;
+   float *trise;
+   float *vrup;
+   float *tsfac;
+   };
+
+struct srfseg
+   {
+   float elon;
+   float elat;
+   int nstk;
+   int ndip;
+   float flen;
+   float fwid;
+   float dlen;
+   float dwid;
+   float stk;
+   float dip;
+   float dtop;
+   float shyp;
+   float dhyp;
+   float *as;
+   float *dd;
+   float *slip;
+   float *rake;
+   float *tinit;
+   int *nt;
+   float *dt;
+   float *stfbuf;
+   float **stf;
+   };
+
+struct standrupform
+   {
+   char version[32];
+   int nseg;
+   struct srfseg *fseg;
+   };
+
+struct srf_apointvaluesOLD
+   {
+   float as;
+   float dd;
+   float lon;
+   float lat;
+   float dep;
+   float mu;
+   float stk;
+   float dip;
+   float rake;
+   float area;
+   float slip;
+   float tinit;
+   int nt;
+   float dt;
+   float *stf;
+   };
+
+struct srf_apointvalues
+   {
+   float lon;
+   float lat;
+   float dep;
+   float stk;
+   float dip;
+   float area;
+   float tinit;
+   float dt;
+   float rake;
+   float slip1;
+   int nt1;
+   float slip2;
+   int nt2;
+   float slip3;
+   int nt3;
+   float *stf1;
+   float *stf2;
+   float *stf3;
+   };
+
+struct srf_allpoints
+   {
+   int np;
+   struct srf_apointvalues *apntvals;
+   };
+
+struct srf_prectsegments
+   {
+   float elon;
+   float elat;
+   int nstk;
+   int ndip;
+   float flen;
+   float fwid;
+   float dlen;
+   float dwid;
+   float stk;
+   float dip;
+   float dtop;
+   float shyp;
+   float dhyp;
+   };
+
+struct srf_planerectangle
+   {
+   int nseg;
+   struct srf_prectsegments *prectseg;
+   };
+
+struct standrupformat
+   {
+   char version[32];
+   char type[32];
+   struct srf_planerectangle srf_prect;
+   struct srf_allpoints srf_apnts;
+   };

Added: SwiftApps/Cybershake/app/post/Makefile
===================================================================
--- SwiftApps/Cybershake/app/post/Makefile	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Makefile	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,66 @@
+
+all: gcproj gen_model_cords cvm4 gen_sgtgrid emod3d-mpi merge_sgt_serial dump_rawsgt jbsim3d surfseis_rspectra utils
+
+getpar:
+	if test -d Getpar; \
+	then cd Getpar/getpar/src && $(MAKE); \
+	fi
+
+gcproj: getpar
+	if test -d PreCVM; \
+	then cd PreCVM/Modelbox/src && $(MAKE); \
+	fi
+
+gen_model_cords: getpar
+	if test -d PreCVM; \
+	then cd PreCVM/GenGrid_py/src && $(MAKE); \
+	fi
+
+cvm4: getpar
+	if test -d V4-WrapC; \
+	then cd V4-WrapC/src && $(MAKE); \
+	fi
+
+gen_sgtgrid: getpar
+	if test -d PreSgt; \
+	then cd PreSgt/src && $(MAKE); \
+	cd ../faultlist && $(MAKE); \
+	fi
+
+emod3d-mpi: getpar
+	if test -d SimSgt; \
+	then cd SimSgt/src && $(MAKE); \
+	fi
+
+merge_sgt_serial: getpar
+	if test -d RecpGF; \
+	then cd RecpGF/src && $(MAKE); \
+	fi
+
+dump_rawsgt: getpar
+	if test -d SgtTest; \
+	then cd SgtTest/src && $(MAKE); \
+	fi
+
+jbsim3d: getpar
+	if test -d JBSim3d; \
+	then cd JBSim3d/SlipModel/StandRupFormat && $(MAKE); \
+	cd ../../src && $(MAKE); \
+	fi
+
+surfseis_rspectra:
+	if test -d SpectralAcceleration; \
+	then cd SpectralAcceleration/p2utils && $(MAKE); \
+	fi
+
+utils:
+	if test -d Utils; \
+	then cd Utils && $(MAKE); \
+	fi
+
+clean:
+	@cd Getpar/getpar/src && $(MAKE) clean
+	@cd JBSim3d/SlipModel/StandRupFormat && $(MAKE) clean
+	@cd JBSim3d/src && $(MAKE) clean
+	@cd Getpar/getpar/src && $(MAKE) clean
+	@cd SpectralAcceleration/p2utils && $(MAKE) clean

Added: SwiftApps/Cybershake/app/post/Notify/SendStatus.py
===================================================================
--- SwiftApps/Cybershake/app/post/Notify/SendStatus.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Notify/SendStatus.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,205 @@
+#!/usr/bin/env python
+
+import sys
+import socket
+import os
+import pwd
+import smtplib
+
+
+# Global vars
+notify_from = ""
+notify_to = []
+site = ""
+workflow = ""
+stage_info = []
+smtphosts = []
+
+
+def doSGT(args):
+    stage = args[0]
+    stages = ["preCVM", "vMeshGen", "vMeshMerge", "sgtGenXY", "sgtMergeXY"]
+    subject = "Status - " + site + " " + workflow + " Workflow" 
+    msg = "Workflow is currently on this stage:\r\n\r\n"
+
+    try:
+        numstage = len(stages)
+        istage = stages.index(stage)
+        for i in range(0, numstage):
+            if (i <= istage):
+                msg = msg + stages[i] + ": Complete\r\n"
+            else:
+                msg = msg + stages[i] + ": Scheduled\r\n"
+    except:
+        print "Stage " + stage + " not found"
+        return 1
+    
+    # Send the email
+    sendNotification(subject, msg, notify_to)
+
+    return 0
+
+
+def doPP(args):
+    stage = args[0]
+    daxnum = int(args[1])
+    maxdax = int(args[2])
+    stages = ["CheckSgt", "DAX"]
+    subject = "Status - " + site + " " + workflow + " Workflow"
+    msg = "Workflow is currently on this stage:\r\n\r\n"   
+    
+    try:
+        istage = stages.index(stage)
+    except:
+        print "Stage " + stage + " not found"
+        return 1
+    
+    if (daxnum > maxdax):
+        print "DAX number " + str(daxnum) + " is greater than max DAX " + str(maxdax)
+        return 1
+    
+    msg = msg + stages[0] + ": Complete\r\n"
+    if (istage > 0):
+        msg = msg + stages[1] + ": Number " + str(daxnum) + " of approx " + str(maxdax) + " completed successfully\r\n"
+    else:
+        msg = msg + stages[1] + ": Scheduled\r\n"
+                        
+    # Send the email
+    sendNotification(subject, msg, notify_to)
+    
+    return 0
+
+
+# Workflow definitions
+# Mapping of workflow name -> tuple (number of arguments, handler)
+WORKFLOWS = {"SGT":(1, doSGT), \
+             "PP":(3, doPP)}
+
+
+# Send email msg using SMTP
+def sendNotification(subject, msg, notify_user):
+    to_str = ""
+    for n in notify_user:
+        if (to_str == ""):
+            to_str = n
+        else:
+            to_str = to_str + "," + n 
+    msg = "From: " + notify_from + \
+        "\r\nTo: " + to_str + \
+        "\r\nSubject: " + subject + \
+        "\r\n" + msg + \
+        "\r\n---------------------------------------------------\r\nAutomated msg from Workflow Status\r\n"
+    
+    for h in smtphosts:
+        try:
+            print "Connecting to SMTP host " + h
+            server = smtplib.SMTP(h)
+            #server.set_debuglevel(1)
+            server.sendmail(notify_from, notify_user, msg)
+            server.quit()
+            return 0
+        except:
+            print sys.exc_info()
+            print "Unable to send notification via host " + h
+ 
+    return 1
+
+
+def init():
+    global notify_from
+    global notify_to
+    global site
+    global workflow
+    global stage_info
+    global smtphosts
+
+    # Get the current user id
+    userid = pwd.getpwuid(os.getuid())[0]
+    domain = socket.getfqdn()
+    notify_from = userid + "@" + domain
+
+    # Create list of possible SMTP servers
+    smtphosts.append('localhost')
+    comps = domain.split('.', 1)
+    if (len(comps) > 1):
+        althost = 'smtp.' + comps[1]
+        smtphosts.append(althost)
+    althost = 'smtp.' + domain
+    smtphosts.append(althost)
+    
+    # Get number of command-line arguments
+    argc = len(sys.argv)
+    
+    # Parse command line arguments
+    if (argc < 5):
+        print "Usage: " + sys.argv[0] + " <site> <workflow> <notify_list file> <stage info>"
+        print "Example: " + sys.argv[0] + " USC SGT notify.file PreCVM"
+        print "Example: " + sys.argv[0] + " USC PP notify.file CheckSgt 12 80"
+        return 1
+            
+    site = sys.argv[1]
+    workflow = sys.argv[2]
+    notify_file = sys.argv[3]
+    stage_info = sys.argv[4:]
+
+    print "Configuration:"
+    print "Notify From:\t" + notify_from
+    print "Notify File:\t" + notify_file
+    print "Site:\t\t" + site
+    print "Workflow:\t" + workflow
+    print "Stage Info:\t" + str(stage_info)
+
+    # Check that the workflow is valid and the correct number of arguments were supplied
+    try:
+        wfinfo = WORKFLOWS[workflow]
+        numargs = wfinfo[0]
+        if (len(stage_info) != numargs):
+            print "Workflow " + workflow + " requires " + str(numargs) + " argument(s)"
+            return 1
+    except:
+        print "Unable to find " + workflow
+        return 1        
+    
+    # Load the notify list from the file
+    try:
+        file = open(notify_file)
+        lines = file.read()
+        lines = lines.splitlines()
+        for l in lines:
+            if (len(l) > 0):
+                notify_to.append(l)
+    except:
+        print "Unable to read file " + notify_file
+        return 1
+
+    print "Notification List:"
+    for n in notify_to:
+        print " " + n
+    
+    return 0
+
+
+def main():
+    if (len(notify_to) == 0):
+        print "No users specified in notify file - notifications disabled"
+    else:
+        # Execute the workflow handler
+        retcode = WORKFLOWS[workflow][1](stage_info)
+        if (retcode != 0):
+            print "Error sending email notification"
+            return 1
+
+    return 0
+
+
+def cleanup():
+    return 0
+
+
+if __name__ == '__main__':
+    if (init() != 0):
+        sys.exit(1)
+    if (main() != 0):
+        sys.exit(1)
+    cleanup()
+    sys.exit(0)


Property changes on: SwiftApps/Cybershake/app/post/Notify/SendStatus.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/README
===================================================================
--- SwiftApps/Cybershake/app/post/README	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/README	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,4 @@
+Source to compile the scec application binaries.
+To compile use: make
+IMP: Requires intel compiler.
+

Added: SwiftApps/Cybershake/app/post/RunManager/CompCurveFile.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/CompCurveFile.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/CompCurveFile.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,52 @@
+#!/usr/bin/env python
+
+# Imports
+import time
+import cgi
+from Config import *
+
+
+# Stores info on a comparison curve file
+class CompCurveFile:
+    srcname = ""
+    escaped = ""
+    site = ""
+    run_id = 0
+    period = ""
+    date = 0
+
+    def __init__(self, srcname):
+        self.srcname = srcname
+        self.escaped = cgi.escape(self.srcname, True)
+        suffix = self.srcname.split(".", 1)
+        if (len(suffix) == 2):
+            tokens = suffix[0].split("_")
+            if (len(tokens) == 8):
+                self.site = tokens[0]
+                self.run_id = int(tokens[2][3:])
+                self.period = tokens[3] + "_" + tokens[4]
+                self.date = int(time.mktime(time.strptime('%s-%s-%s' % \
+                                                              (tokens[7], \
+                                                                   tokens[5], \
+                                                                   tokens[6]), \
+                                                              '%Y-%m-%d')))
+
+    def getRunID(self):
+        return self.run_id
+
+    def getDate(self):
+        return self.date
+
+    def getSiteName(self):
+        return self.site
+
+    def getEscaped(self):
+        return self.escaped
+
+    def getFilename(self):
+        return self.srcname
+
+    def getPeriod(self):
+        return self.period
+
+


Property changes on: SwiftApps/Cybershake/app/post/RunManager/CompCurveFile.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/Condor.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/Condor.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/Condor.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,152 @@
+#!/usr/bin/env python
+
+
+# Imports
+import os
+import sys
+import time
+import subprocess
+from CondorJob import *
+
+
+# Globals
+CONDOR_Q = "condor_q"
+CONDOR_RETRY = 3
+CONDOR_WAIT_SECS = 30
+
+
+class Condor:
+    job_cache = {}
+
+    def __init__(self):
+        job_cache = {}
+        return
+
+    def __runCommand(self, cmd):
+        try:
+            p = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+            output = p.communicate()[0]
+            retcode = p.returncode
+            if retcode != 0:
+                #print output
+                #print "Non-zero exit code"
+                return None
+        except:
+            #print sys.exc_info()
+            #print "Failed to run cmd: " + str(cmd)
+            return None
+
+        output = output.splitlines()
+        return output
+
+
+    def __runCondorCommand(self, cmd):
+
+        # Under high scheduler load, will get failure to connect error. In this case
+        # retry the query
+        count = 0
+        done = False
+        while ((count < CONDOR_RETRY) and (not done)):
+            output = self.__runCommand(cmd)
+            if (output == None):
+                print "Failed to execute condor command."
+                count = count + 1
+                print "Waiting " + str(CONDOR_WAIT_SECS) + " secs, then retrying"
+                time.sleep(CONDOR_WAIT_SECS)
+            else:
+                done = True
+
+        if (not done):
+            return None
+        else:
+            return output
+
+
+    def __parseClassAds(self, classads):
+        # Check to ensure there is a classad
+        if (len(classads) <= 4):
+            return None
+
+        classad_dict = {}
+        for ad in classads:
+            tokens = ad.split(" = ", 1)
+            if (len(tokens) == 2):
+                classad_dict[tokens[0]] = tokens[1]
+            #else:
+            #    print "Invalid classad (%s)" % (ad)
+        if (len(classad_dict.keys()) == 0):
+            return None
+        else:
+            return classad_dict
+
+
+    def getJobs(self):
+        return None
+
+
+    def getJob(self, job_id):
+        # Method returns tuple (job object, error code) in order to allow 
+        # apps to distinguish between condor_q errors and 
+        # non-existance of a job
+
+        if ((job_id == None) or (str(job_id) == "")):
+            return (None, 0)
+
+        # Query condor_q for this job's classad
+        condorcmd = [CONDOR_Q, '-long', str(job_id)]
+        output = self.__runCondorCommand(condorcmd)
+        if (output == None):
+            return (None, 1)
+        
+        classads = self.__parseClassAds(output)
+        if (classads == None):
+            return (None, 0)
+
+        # Parse the classad
+        job = CondorJob()
+        job.setJobID(job_id)
+        for k,v in classads.items():
+            if (k == 'DAGManJobId'):
+                job.setParent(v)
+            elif (k == "JobStatus"):
+                job.setStatus(int(v))
+            elif (k == 'Cmd'):
+                job.setCommand(v)
+
+        return (job, 0)
+
+
+    def cacheAllJobs(self):
+
+        # Query condor_q for this job's classad
+        condorcmd = [CONDOR_Q,]
+        output = self.__runCondorCommand(condorcmd)
+        if (output == None):
+            return 1
+
+        if (len(output) < 6):
+            self.job_cache = {}
+            return 0
+        
+        # Strip off beginning 4 lines, last 2 lines
+        output = output[4:-2]
+
+        for line in output:
+            job_id = line.split()[0].split(".")[0]
+            # Add new entry in job cache
+            job = CondorJob()
+            job.setJobID(job_id)
+            self.job_cache[job_id] = job
+
+        return 0
+
+
+    def getJobFromCache(self, job_id):
+        if ((job_id == None) or (str(job_id) == "")):
+            return None
+
+        if (str(job_id) in self.job_cache.keys()):
+            job = self.job_cache[str(job_id)]
+            return job
+
+        return None


Property changes on: SwiftApps/Cybershake/app/post/RunManager/Condor.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/CondorJob.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/CondorJob.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/CondorJob.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,108 @@
+#!/usr/bin/env python
+
+
+# Imports
+import sys
+import time
+
+
+# Globals
+CONDOR_DAGMAN = "condor_dagman"
+
+
+class CondorJob:
+    job_id = None
+    status = None
+    parent = None
+    cmd = None
+    status_time = None
+    num_starts = None
+
+
+    def __init__(self):
+        self.job_id = None
+        self.status = None
+        self.parent = None
+        self.cmd = None
+        self.status_time = None
+        self.num_starts = None
+
+
+    def getJobID(self):
+        return self.job_id
+
+
+    def setJobID(self, job_id):
+        if (job_id == None):
+            self.job_id = None
+        else:
+            self.job_id = str(job_id)
+
+
+    def getStatus(self):
+        return self.status
+
+
+    def setStatus(self, status):
+        if (status == None):
+            self.status = None
+        else:
+            self.status = int(status)
+
+
+    def isDAG(self):
+        if ((self.cmd != None) and (self.cmd.find(CONDOR_DAGMAN) != -1)):
+            return True
+        else:
+            return False
+
+
+    def isChild(self):
+        if (self.parent != None):
+            return True
+        else:
+            return False
+
+
+    def getCommand(self):
+        return self.command
+
+
+    def setCommand(self, cmd):
+        if (cmd == None):
+            self.cmd = None
+        else:
+            self.cmd = str(cmd)
+
+
+    def getParent(self):
+        return self.parent
+
+
+    def setParent(self, parent):
+        if (parent == None):
+            self.parent = None
+        else:
+            self.parent = int(parent)
+
+
+    def getStatusTime(self):
+        return self.status_time
+
+
+    def setStatusTime(self, status_time):
+        if (status_time == None):
+            self.status_time = None
+        else:
+            self.status_time = int(status_time)
+
+
+    def getNumStarts(self):
+        return self.num_starts
+
+
+    def setNumStarts(self, num_starts):
+        if (num_starts == None):
+            self.num_starts = None
+        else:
+            self.num_starts = int(num_starts)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/CondorJob.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/Config.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/Config.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/Config.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,89 @@
+#!/usr/bin/env python
+
+
+# DB Constants
+DB_HOST = "focal.usc.edu"
+DB_PORT = 3306
+DB_USER_WR = "cybershk"
+DB_PASS_WR = "re at lStil1"
+DB_USER = "cybershk_ro"
+DB_PASS = "CyberShake2007"
+DB_NAME = "CyberShake"
+
+# Valid computing resources
+HOST_LIST = ["unknown", "hpc", "mercury", "abe", "ranger", "kraken", \
+                 "sdsc"]
+
+# Valid users
+USER_LIST = ["cybershk", "tera3d", "scottcal", "kmilner", "maechlin", \
+                 "patrices"]
+
+# Valid states
+START_STATE = "Initial"
+PLOT_STATE = "Plotting"
+DONE_STATE = "Verified"
+DELETED_STATE = "Deleted"
+SGT_STATES = ["SGT Started", "SGT Generated", "SGT Error",]
+PP_STATES = ["PP Started", "Curves Generated", "PP Error",]
+ACTIVE_STATES = ["Initial", "SGT Started", "SGT Error", \
+                     "SGT Generated", "PP Started", "PP Error", \
+                     "Curves Generated", "Plotting", "Verify Error",]
+
+# Dictionary expressing the state-transition-diagram
+STATUS_STD = {"Initial": ["Initial", "SGT Started", "SGT Error", "Deleted",], \
+              "SGT Started":["SGT Started", "SGT Generated", "SGT Error", \
+                                 "Deleted",], \
+              "SGT Error":["Initial", "SGT Started", "SGT Error", "Deleted",], \
+              "SGT Generated":["SGT Generated", "PP Started", "PP Error", \
+                                   "Deleted",], \
+              "PP Started":["PP Started", "Curves Generated", "PP Error", \
+                                "Deleted",], \
+              "PP Error":["SGT Generated", "PP Started", "PP Error", \
+                              "Deleted",], \
+              "Curves Generated":["Curves Generated", "Plotting", "Verified", \
+                                      "Verify Error", "Deleted",], \
+              "Plotting":["Plotting", "Verified", "Verify Error", \
+                              "Deleted", ], \
+              "Verify Error":["Verify Error", "Plotting", "Verified", \
+                                  "Deleted"], \
+              "Verified":["Verified",], \
+              "Deleted":["Deleted", ]}
+
+
+# OpenSHA scripts and config
+OPENSHA_LOGIN = 'cybershk at opensha.usc.edu'
+OPENSHA_DIR = '/home/scec-00/cybershk/opensha'
+OPENSHA_SCATTER_SCRIPT = '%s/make_scatter_map.sh' % (OPENSHA_DIR)
+OPENSHA_INTERPOLATED_SCRIPT = '%s/make_interpolated_map.sh' % (OPENSHA_DIR)
+OPENSHA_CURVE_SCRIPT = '%s/curve_plot_wrapper.sh' % (OPENSHA_DIR)
+OPENSHA_XML_DIR = '/home/scec-00/cybershk/opensha/OpenSHA/org/opensha/sha/cybershake/conf'
+OPENSHA_ERF_XML = '%s/%s' % (OPENSHA_XML_DIR, 'MeanUCERF.xml')
+OPENSHA_AF_XML = '%s/%s,%s/%s,%s/%s,%s/%s' % \
+    (OPENSHA_XML_DIR, 'cb2008.xml', \
+         OPENSHA_XML_DIR, 'ba2008.xml', \
+         OPENSHA_XML_DIR, 'cy2008.xml', \
+         OPENSHA_XML_DIR, 'as2008.xml')
+OPENSHA_DBPASS_FILE = '/home/scec-00/cybershk/config/db_pass.txt'
+
+
+# Directory containing hazard curve images
+CURVE_DIR = "/home/scec-00/cybershk/opensha/curves/"
+
+
+# Path to the most recent scatter plot
+SCATTER_IMG = "/home/scec-00/cybershk/opensha/scatter/map_cb.png"
+
+
+# Path to the most recent interpolated maps
+INTERPOLATED_ALL_IMG = "/home/scec-00/cybershk/opensha/interpolatedMap/map.png"
+INTERPOLATED_GRID_IMG = "/home/scec-00/cybershk/opensha/interpolatedMap/allGrid.png"
+
+
+# Website URL
+WEB_URL = "http://intensity.usc.edu/cybershake/status/"
+
+
+# Maximum column lengths
+MAX_RUN_SUBMIT_DIR = 256
+MAX_RUN_COMMENT = 128
+MAX_RUN_NOTIFY_USER = 128


Property changes on: SwiftApps/Cybershake/app/post/RunManager/Config.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/Curve.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/Curve.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/Curve.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,87 @@
+#!/usr/bin/env python
+
+# Imports
+import sys
+import os
+import pwd
+import time
+from Config import *
+
+
+class Curve:
+    curve_id = None
+    im_id = None
+    im_measure = None
+    im_value = None
+    im_units = None
+
+    def __init__(self):
+        self.curve_id = None
+        self.im_id = None
+        self.im_measure = None
+        self.im_value = None
+        self.im_units = None
+
+    def copy(self, obj):
+        self.curve_id = obj.curve_id
+        self.im_id = obj.im_id
+        self.im_measure = obj.im_measure
+        self.im_value = obj.im_value
+        self.im_units = obj.im_units
+
+    #@staticmethod
+    def formatHeader(self):
+        headers = ["Curve ID", "IM Measure", "IM Value", "IM Units",]
+        return headers
+
+    def formatData(self):
+        data = [str(self.curve_id), \
+                    str(self.im_measure), \
+                    str(self.im_value), \
+                    str(self.im_units),]
+        return data
+
+    def getCurveID(self):
+        return self.curve_id
+
+    def setCurveID(self, curve_id):
+        if (curve_id == None):
+            self.curve_id = curve_id
+        else:
+            self.curve_id = int(curve_id)
+
+    def getIMID(self):
+        return self.im_id
+
+    def setIMID(self, im_id):
+        if (im_id == None):
+            self.im_id = im_id
+        else:
+            self.im_id = int(im_id)
+
+    def getIMMeasure(self):
+        return self.im_measure
+
+    def setIMMeasure(self, im_measure):
+        if (im_measure == None):
+            self.im_measure = im_measure
+        else:
+            self.im_measure = str(im_measure)
+
+    def getIMValue(self):
+        return self.im_value
+
+    def setIMValue(self, im_value):
+        if (im_value == None):
+            self.im_value = im_value
+        else:
+            self.im_value = float(im_value)
+
+    def getIMUnits(self):
+        return self.im_units
+
+    def setIMUnits(self, im_units):
+        if (im_units == None):
+            self.im_units = im_units
+        else:
+            self.im_units = str(im_units)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/Curve.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/Database.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/Database.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/Database.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,127 @@
+#!/usr/bin/env python
+
+import sys
+import MySQLdb
+
+
+class Database:
+    host = ""
+    port = 0
+    user = ""
+    password = ""
+    db = ""
+    connection = None
+    cursor = None
+    html = True
+
+    def __init__(self, host, port, user, password, db):
+        self.host = host
+        self.port = port
+        self.user = user
+        self.password = password
+        self.db = db
+        self.connection = None
+        self.cursor = None
+        self.html = True
+
+
+    def _printError(self, str):
+        if (self.html):
+            print "%s<p>" % (str)
+        else:
+            print "%s" % (str)
+        return
+
+
+    def useHTML(self, flag):
+        self.html = flag
+        return
+    
+        
+    def open(self):
+        try:
+            self.connection = MySQLdb.connect(host=self.host,\
+                                                port=self.port,user=self.user,\
+                                                passwd=self.password,db=self.db)
+            self.cursor = self.connection.cursor()
+        except MySQLdb.OperationalError,message:
+            self._printError("Error %d:\n%s" % (message[0], message[1]))
+            return 1
+        return 0
+
+
+    def close(self):
+        try:
+            self.connection.close()
+        except MySQLdb.OperationalError,message:
+            self._printError("Error %d:\n%s" % (message[0], message[1]))
+            return 1
+        return 0
+
+
+    def beginTransaction(self):
+        try:
+            self.cursor.execute("BEGIN")
+            #self.connection.begin()
+        except MySQLdb.OperationalError,message:
+            self._printError("Error %d:\n%s" % (message[0], message[1]))
+            return 1
+        return 0
+
+
+    def commit(self):
+        try:
+            self.connection.commit()
+        except MySQLdb.OperationalError,message:
+            self._printError("Error %d:\n%s" % (message[0], message[1]))
+            return 1
+        return 0        
+
+
+    def rollback(self):
+        try:
+            self.connection.rollback()
+        except MySQLdb.OperationalError,message:
+            self._printError("Error %d:\n%s" % (message[0], message[1]))
+            return 1
+        return 0        
+
+
+    def execsql(self, sql):
+        try:
+            self.cursor.execute(sql)
+        except MySQLdb.DatabaseError,message:
+            self._printError("Error %d:\n%s" % (message[0], message[1]))
+            return 1
+        return 0
+
+
+    def execsqlbulk(self, sql, data):
+        try:
+            self.cursor.executemany(sql, data)
+        except MySQLdb.DatabaseError,message:
+            self._printError("Error %d:\n%s" % (message[0], message[1]))
+            return 1
+        return 0
+
+
+    def getResultsAll(self):
+        try:
+            results = self.cursor.fetchall()
+            return results
+        except MySQLdb.DatabaseError,message:
+            self._printError("Error %d:\n%s" % (message[0], message[1]))
+
+        return None
+
+
+    def getResultsNext(self):
+        try:
+            results = self.cursor.fetchone()
+            return results
+        except MySQLdb.DatabaseError,message:
+            self._printError("Error %d:\n%s" % (message[0], message[1]))
+
+        return None
+
+


Property changes on: SwiftApps/Cybershake/app/post/RunManager/Database.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/Mailer.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/Mailer.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/Mailer.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,68 @@
+#!/usr/bin/env python
+
+import sys
+import socket
+import os
+import pwd
+import smtplib
+from Config import *
+
+
+# Constants
+FOOTER = "\r\n------------------------------------------------------------" + \
+    "\r\nAutomated msg from CyberShake RunManager" + \
+    "\r\n" + WEB_URL + "\r\n"
+
+
+class Mailer:
+    smtphosts = []
+    from_user = ""
+
+    def __init__(self):
+
+        # Get the current user id
+        userid = pwd.getpwuid(os.getuid())[0]
+        domain = socket.getfqdn()
+        self.from_user = userid + "@" + domain
+
+        # Create list of possible SMTP servers
+        self.smtphosts.append('localhost')
+        comps = domain.split('.', 1)
+        if (len(comps) > 1):
+            althost = 'smtp.' + comps[1]
+            self.smtphosts.append(althost)
+        althost = 'smtp.' + domain
+        self.smtphosts.append(althost)
+
+        return
+
+    def send(self, to_user, subject, msg):
+        to_str = ""
+        if (type(to_user) == type([])):
+            for n in to_user:
+                if (to_str == ""):
+                    to_str = n
+                else:
+                    to_str = to_str + "," + n 
+        else:
+            to_str = str(to_user)
+
+        msg_str = "From: %s\r\nTo: %s\r\nSubject: %s\r\n%s%s" % \
+            (self.from_user, to_str, subject, msg, FOOTER)
+
+        for h in self.smtphosts:
+            try:
+                print "Connecting to SMTP host " + h
+                server = smtplib.SMTP(h)
+                #server.set_debuglevel(1)
+                server.sendmail(self.from_user, to_str, msg_str)
+                server.quit()
+                return 0
+            except:
+                print sys.exc_info()
+                print "Unable to send notification via host " + h
+
+        # Exhausted all possible smtp hosts
+        return 1
+
+


Property changes on: SwiftApps/Cybershake/app/post/RunManager/Mailer.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/RLS.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/RLS.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/RLS.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,121 @@
+#!/usr/bin/env python
+
+
+# Imports
+import os
+import sys
+import subprocess
+
+
+# Constants
+RLS_HOST = "shock.usc.edu"
+
+
+# Globals
+
+
+class RLS:
+    rls_host = None
+
+    def __init__(self, rls_host = None):
+        if (rls_host != None):
+            self.rls_host = "rls://%s" % (rls_host)
+        else:
+            self.rls_host = "rls://%s" % (RLS_HOST)
+        return
+
+    def __runCommand(self, cmd):
+        try:
+            p = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
+            output = p.communicate()[0]
+            retcode = p.returncode
+            if retcode != 0:
+                #print output
+                #print "Non-zero exit code"
+                return None
+        except:
+            #print sys.exc_info()
+            #print "Failed to run cmd: " + str(cmd)
+            return None
+
+        output = output.splitlines()
+        return output
+
+
+    def getPFNs(self, lfn):
+
+        cmd = ['globus-rls-cli',  'query',  'lrc', 'lfn',  lfn, self.rls_host,]
+        output = self.__runCommand(cmd)
+        if (output == None):
+            return None
+        else:
+            pfn_list = []
+            for l in output:
+                tokens = l.split(":", 1)
+                if (len(tokens) == 2):
+                    pfn = tokens[1]
+                    pfn = pfn.strip()
+                    pfn_list.append(pfn)
+            return pfn_list
+
+
+    def renamePFN(self, old_pfn, new_pfn):
+
+        cmd = ['globus-rls-cli',  'rename',  'pfn', old_pfn, new_pfn, self.rls_host,]
+        output = self.__runCommand(cmd)
+        if (output == None):
+            return 1
+
+        return 0
+
+
+    def getPools(self, pfn):
+
+        cmd = ['globus-rls-cli', 'attribute', 'query', pfn, 'pool', 'pfn', self.rls_host,]
+        output = self.__runCommand(cmd)
+        if (output == None):
+            return None
+        else:
+            pool_list = []
+            for l in output:
+                tokens = l.split(":", 2)
+                if (len(tokens) == 3):
+                    pool = tokens[2]
+                    pool = pool.strip()
+                    pool_list.append(pool)
+            return pool_list
+
+
+    def addPool(self, pfn, pool):
+        cmd = ['globus-rls-cli',  'attribute',  'add', pfn, 'pool', 'pfn', 'string', pool, self.rls_host,]
+        output = self.__runCommand(cmd)
+        if (output == None):
+            return 1
+
+        return 0
+
+
+    def createLFN(self, lfn, pfn, pool=None):
+
+        cmd = ['globus-rls-cli', 'create', lfn, pfn, self.rls_host,]
+        output = self.__runCommand(cmd)
+        if (output == None):
+            return 1
+
+        if (pool != None):
+            cmd = ['globus-rls-cli', 'attribute', 'add', pfn, 'pool', 'pfn', 'string', pool, self.rls_host,]
+            output = self.__runCommand(cmd)
+            if (output == None):
+                return 1
+
+        return 0
+
+
+    def delete(self, lfn, pfn):
+
+        cmd = ['globus-rls-cli',  'delete',  lfn, pfn, self.rls_host,]
+        output = self.__runCommand(cmd)
+        if (output == None):
+            return 1
+
+        return 0


Property changes on: SwiftApps/Cybershake/app/post/RunManager/RLS.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/Run.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/Run.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/Run.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,294 @@
+#!/usr/bin/env python
+
+# Imports
+import sys
+import os
+import pwd
+import time
+from Config import *
+from Site import *
+
+
+class Run:
+    run_id = None
+    site_obj = None
+    erf_id = None
+    sgt_var_id = None
+    rup_var_id = None
+    status = None
+    status_time = None
+    sgt_host = None
+    sgt_time = None
+    pp_host = None
+    pp_time = None
+    comment = None
+    last_user = None
+    job_id = None
+    submit_dir = None
+    notify_user = None
+
+
+    def __init__(self):
+        self.run_id = None
+        self.site_obj = Site()
+        self.erf_id = None
+        self.sgt_var_id = None
+        self.rup_var_id = None
+        self.status = None
+        self.status_time = None
+        self.sgt_host = None
+        self.sgt_time = None
+        self.pp_host = None
+        self.pp_time = None
+        self.comment = None
+        self.last_user = None
+        self.job_id = None
+        self.submit_dir = None
+        self.notify_user = None
+
+
+    def copy(self, obj):
+        self.run_id = obj.run_id
+        self.site_obj = obj.site_obj
+        self.erf_id = obj.erf_id
+        self.sgt_var_id = obj.sgt_var_id
+        self.rup_var_id = obj.rup_var_id
+        self.status = obj.status
+        self.status_time = obj.status_time
+        self.sgt_host = obj.sgt_host
+        self.sgt_time = obj.sgt_time
+        self.pp_host = obj.pp_host
+        self.pp_time = obj.pp_time
+        self.comment = obj.comment
+        self.last_user = obj.last_user
+        self.job_id = obj.job_id
+        self.submit_dir = obj.submit_dir
+        self.notify_user = obj.notify_user
+
+
+    #@staticmethod
+    def formatHeader(self):
+        headers = ["Run ID", "Site", "Status", "Status Time (GMT)", \
+                       "SGT Host", "PP Host", "Comment", "Job ID", ]
+        return headers
+
+    def formatData(self):
+        if (self.site_obj != None):
+            site_name = self.site_obj.getShortName()
+            site_id = self.site_obj.getSiteID()
+        else:
+            site_name = None
+            site_id = None
+        data = [str(self.run_id), \
+                    "%s (%s)" % (str(site_name), str(site_id)), \
+                    str(self.status), \
+                    str(self.status_time), \
+                    str(self.sgt_host), \
+                    str(self.pp_host), \
+                    str(self.comment), \
+                    str(self.job_id),]
+        return data
+
+    def getRunID(self):
+        return self.run_id
+
+    def setRunID(self, run_id):
+        if (run_id == None):
+            self.run_id = run_id
+        else:
+            self.run_id = int(run_id)
+
+    def getSite(self):
+        return self.site_obj
+
+    def setSite(self, site_obj):
+        self.site_obj = site_obj
+
+    def getERFID(self):
+        return self.erf_id
+
+    def setERFID(self, erf_id):
+        if (erf_id == None):
+            self.erf_id = erf_id
+        else:
+            self.erf_id = int(erf_id)
+
+    def getSGTVarID(self):
+        return self.sgt_var_id
+
+    def setSGTVarID(self, sgt_var_id):
+        if (sgt_var_id == None):
+            self.sgt_var_id = sgt_var_id
+        else:
+            self.sgt_var_id = int(sgt_var_id)
+
+    def getRupVarID(self):
+        return self.rup_var_id
+
+    def setRupVarID(self, rup_var_id):
+        if (rup_var_id == None):
+            self.rup_var_id = rup_var_id
+        else:
+            self.rup_var_id = int(rup_var_id)
+
+    def getStatus(self):
+        return self.status
+
+    def setStatus(self, status):
+        if (status == None):
+            self.status = status
+        else:
+            self.status = str(status)
+
+    def getStatusTime(self):
+        return self.status_time
+
+    def setStatusTime(self, status_time):
+        if (status_time == None):
+            self.status_time = status_time
+        else:
+            self.status_time = str(status_time)
+
+    def setStatusTimeCurrent(self):
+        self.status_time = time.strftime("%Y-%m-%d %H:%M:%S", \
+                                             time.gmtime(time.time()))
+
+    def getSGTHost(self):
+        return self.sgt_host
+
+    def setSGTHost(self, sgt_host):
+        if (sgt_host == None):
+            self.sgt_host = sgt_host
+        else:
+            self.sgt_host = str(sgt_host)
+
+    def getSGTTime(self):
+        return self.sgt_time
+
+    def setSGTTime(self, sgt_time):
+        if (sgt_time == None):
+            self.sgt_time = sgt_time
+        else:
+            self.sgt_time = str(sgt_time)
+
+    def setSGTTimeCurrent(self):
+        self.sgt_time = time.strftime("%Y-%m-%d %H:%M:%S", \
+                                          time.gmtime(time.time()))
+
+    def getPPHost(self):
+        return self.pp_host
+
+    def setPPHost(self, pp_host):
+        if (pp_host == None):
+            self.pp_host = pp_host
+        else:
+            self.pp_host = str(pp_host)
+
+    def getPPTime(self):
+        return self.pp_time
+
+    def setPPTime(self, pp_time):
+        if (pp_time == None):
+            self.pp_time = pp_time
+        else:
+            self.pp_time = str(pp_time)
+
+    def setPPTimeCurrent(self):
+        self.pp_time = time.strftime("%Y-%m-%d %H:%M:%S", \
+                                         time.gmtime(time.time()))
+
+    def getComment(self):
+        return self.comment
+
+    def setComment(self, comment):
+        if (comment == None):
+            self.comment = comment
+        else:
+            self.comment = str(comment)
+
+    def getLastUser(self):
+        return self.last_user
+
+    def setLastUser(self, last_user):
+        if (last_user == None):
+            self.last_user = last_user
+        else:
+            self.last_user = str(last_user)
+
+    def setLastUserCurrent(self):
+        self.last_user = pwd.getpwuid(os.getuid())[0]
+                    
+    def getJobID(self):
+        #if (self.job_id == ""):
+        #    return None
+        return self.job_id
+
+    def setJobID(self, job_id):
+        if (job_id == None):
+            self.job_id = job_id
+        else:
+            self.job_id = str(job_id)
+
+    def getSubmitDir(self):
+        #if (self.submit_dir == ""):
+        #    return None
+        return self.submit_dir
+
+    def setSubmitDir(self, submit_dir):
+        if (submit_dir == None):
+            self.submit_dir = submit_dir
+        else:
+            self.submit_dir = str(submit_dir)
+
+    def getNotifyUser(self):
+        #if (self.notify_user == ""):
+        #    return None
+        return self.notify_user
+
+    def getNotifyUserAsList(self):
+        if ((self.notify_user == None) or (self.notify_user == "")):
+            return None
+        else:
+            return self.notify_user.split(",")
+
+    def setNotifyUser(self, notify_user):
+        if (notify_user == None):
+            self.notify_user = notify_user
+        elif (type(notify_user) == type([])):
+            self.notify_user = ""
+            for n in notify_user:
+                if (self.notify_user == ""):
+                    self.notify_user = n
+                else:
+                    self.notify_user = self.notify_user + "," + n
+        else:
+            self.notify_user = str(notify_user)
+
+
+    def dumpToScreen(self):
+        if (self.site_obj != None):
+            site_name = self.site_obj.getShortName()
+            site_id = self.site_obj.getSiteID()
+        else:
+            site_name = None
+            site_id = None
+
+        print "Run ID:\t\t %s" % (str(self.run_id))
+        print "Site:\t\t %s (id=%s)" % (str(site_name), str(site_id))
+        print "Params:\t\t erf=%s sgt_var=%s rup_var=%s" % \
+            (str(self.erf_id), \
+                 str(self.sgt_var_id), \
+                 str(self.rup_var_id))
+        print "State:\t\t state='%s' time='%s'" % \
+            (str(self.status), str(self.status_time))
+        print "SGT Info:\t host=%s time='%s'" % \
+            (str(self.sgt_host), str(self.sgt_time))
+        print "PP Info:\t host=%s time='%s'" % \
+            (str(self.pp_host), str(self.pp_time))
+        print "Comment:\t '%s'" % (str(self.comment))
+        print "Tracking:\t user='%s' job_id='%s'" % \
+            (str(self.last_user), str(self.job_id))
+        print "Submit Dir:\t %s" % (str(self.submit_dir))
+        print "Notify User:\t %s" % (str(self.notify_user))
+        return 0
+                                                                            


Property changes on: SwiftApps/Cybershake/app/post/RunManager/Run.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/RunManager.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/RunManager.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/RunManager.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,817 @@
+#!/usr/bin/env python
+
+# Imports
+import sys
+from Database import *
+from Config import *
+from Run import *
+from RunStats import *
+from Site import *
+from Curve import *
+
+
+# Constants
+RUN_TABLE_NAME = "CyberShake_Runs"
+
+
+class RunManager:
+    database = None
+    html = True
+    valid = False
+
+    def __init__(self, readonly=True):
+        if (readonly == False):
+            self.database = Database(DB_HOST, DB_PORT, DB_USER_WR, \
+                                         DB_PASS_WR, DB_NAME)
+        else:
+            self.database = Database(DB_HOST, DB_PORT, DB_USER, DB_PASS, \
+                                         DB_NAME)
+        retval = self.database.open()
+        if (retval == 0):
+            self.valid = True
+        else:
+            self.valid = False
+        self.database.useHTML(False)
+        self.html = False
+
+    def __del__(self):
+        self.database.close()
+
+    def _printError(self, str):
+        if (self.html):
+            print "%s<p>" % (str)
+        else:
+            print "%s" % (str)
+        return
+
+    def isValid(self):
+        return self.valid
+
+    def useHTML(self, flag):
+        self.html = flag
+        self.database.useHTML(flag)
+        return
+
+    def beginTransaction(self):
+        self.database.beginTransaction()
+        return
+
+    def commitTransaction(self):
+        self.database.commit()
+        return
+    
+    def rollbackTransaction(self):
+        self.database.rollback()
+        return
+    
+    def __getSiteID(self, site):
+        # Retrieve this site_id
+        sqlcmd = "select CS_Site_ID from CyberShake_Sites s where s.CS_Short_Name ='%s'" % (site)
+        if (self.database.execsql(sqlcmd) != 0):
+            self._printError("Unable to execute query for site %s." % (site))
+            return 0
+        site_id = self.database.getResultsNext()
+        if (site_id == None):
+            self._printError("Site %s not found in DB." % (site))
+            return 0
+        
+        return site_id[0]
+
+
+    def __getSiteName(self, site_id):
+        # Retrieve this site name
+        sqlcmd = "select CS_Short_Name from CyberShake_Sites s where s.CS_Site_ID = %d" % (site_id)
+        if (self.database.execsql(sqlcmd) != 0):
+            self._printError("Unable to retrieve site_id %d" % (site_id))
+            return None
+    
+        site = self.database.getResultsNext()
+        if (site == None):
+            self._printError("Site_id %d not found in DB." % (site_id))
+            return None
+        
+        return site[0]
+
+
+    def __getParamIDs(self, id_str):
+        # Get list of IDs for the specified param
+        if (id_str == "ERF"):
+            sqlcmd = "select ERF_ID from ERF_IDs order by ERF_ID desc"
+        elif (id_str == "SGT_VAR"):
+            sqlcmd = "select SGT_Variation_ID from SGT_Variation_IDs order by SGT_Variation_ID desc"
+        elif (id_str == "RUP_VAR"):
+            sqlcmd = "select Rup_Var_Scenario_ID from Rupture_Variation_Scenario_IDs order by Rup_Var_Scenario_ID desc"
+        else:
+            self._printError("Unrecognized option %s" % (id_str))
+            return None
+        
+        if (self.database.execsql(sqlcmd) != 0):
+            self._printError("Unable to query for IDs.")
+            return None
+        id_list = self.database.getResultsAll()
+        if (len(id_list) == 0):
+            self._printError("No IDs found in DB for %s." % (id_str))
+            return None
+        return id_list
+
+
+    
+    def __getLatestID(self, id_str):
+        # Get the most recent ID for the specified param
+        id_list = self.__getParamIDs(id_str)
+        if (id_list == None):
+            return 0
+        else:
+            return id_list[0][0]
+
+
+    def __isValidID(self, id_str, id):
+        if (id_str == "ERF"):
+            sqlcmd = "select count(*) from ERF_IDs where ERF_ID=%d" % (id)
+        elif (id_str == "SGT_VAR"):
+            sqlcmd = "select count(*) from SGT_Variation_IDs where SGT_Variation_ID=%d" % (id)
+        elif (id_str == "RUP_VAR"):
+            sqlcmd = "select count(*) from Rupture_Variation_Scenario_IDs where Rup_Var_Scenario_ID=%d" % (id)
+        else:
+            self._printError("Unrecognized option %s" % (id_str))
+            return False
+        
+        if (self.database.execsql(sqlcmd) != 0):
+            self._printError("Unable to query for IDs.")
+            return False
+        count = self.database.getResultsNext()
+        if (count == None):
+            self._printError("No IDs found in DB for %s-%d." % (id_str, id))
+            return False
+        if (count[0] == 0):
+            self._printError("No IDs found in DB for %s-%d." % (id_str, id))
+            return False
+        else:
+            return True
+
+
+    def __getFieldDict(self, run, key=False):
+        fields = {}
+
+        site = run.getSite()
+        if (key):
+            if (run.getRunID() != None):
+                fields["Run_ID"] = run.getRunID()
+        if (site.getSiteID() != None):
+            fields["Site_ID"] = site.getSiteID()
+        if (run.getERFID() != None):
+            fields["ERF_ID"] = run.getERFID()
+        if (run.getSGTVarID() != None):
+            fields["SGT_Variation_ID"] = run.getSGTVarID()
+        if (run.getRupVarID() != None):
+            fields["Rup_Var_Scenario_ID"] = run.getRupVarID()
+        if (run.getStatus() != None):
+            fields["Status"] = run.getStatus()
+        if (run.getStatusTime() != None):
+            fields["Status_Time"] = run.getStatusTime()
+        if (run.getSGTHost() != None):
+            fields["SGT_Host"] = run.getSGTHost()
+        if (run.getSGTTime() != None):
+            fields["SGT_Time"] = run.getSGTTime()
+        if (run.getPPHost() != None):
+            fields["PP_Host"] = run.getPPHost()
+        if (run.getPPTime() != None):
+            fields["PP_Time"] = run.getPPTime()
+        if (run.getComment() != None):
+            fields["Comment"] = run.getComment()
+        if (run.getLastUser() != None):
+            fields["Last_User"] = run.getLastUser()
+        if (run.getJobID() != None):
+            fields["Job_ID"] = run.getJobID()
+        if (run.getSubmitDir() != None):
+            fields["Submit_Dir"] = run.getSubmitDir()
+        if (run.getNotifyUser() != None):
+            fields["Notify_User"] = run.getNotifyUser()
+            
+        return fields
+
+
+    def __getLastRunID(self):
+        # Retrieve the last run_id produced from the auto-increment var
+        sqlcmd = "select LAST_INSERT_ID()"
+        if (self.database.execsql(sqlcmd) != 0):
+            self._printError("Unable to query for last insert id.")
+            return 0
+        results = self.database.getResultsNext()
+        if ((results == None) or (results[0] == 0)):
+            self._printError("Unable to find last inserted run_id.")
+            return 0
+    
+        return results[0]
+
+
+    def __insertRun(self, run):
+        # Construct column and data strings for SQL command
+        fields = self.__getFieldDict(run)
+        column_str = ""
+        data_str = ""
+        for f,v in fields.items():
+            if (len(column_str) > 0):
+                column_str = column_str + ', '
+            column_str = column_str + str(f)
+            if (len(data_str) > 0):
+                data_str = data_str + ', '
+            if (v == None):
+                self._printError("Field pair %s=None, cannot insert record." % (f))
+                return 0
+            if (type(v) == str):
+                data_str = data_str + "'" + str(v) + "'"
+            else:
+                data_str = data_str + str(v)
+
+        # Execute SQL
+        sqlcmd = "insert into %s (%s) values (%s)" % \
+            (RUN_TABLE_NAME, column_str, data_str)
+        if (self.database.execsql(sqlcmd) != 0):
+            self._printError("Unable to add run for site %s." % \
+                                 (run.getSite().getShortName()))
+            return 0
+
+        # Get the run_id auto-increment value
+        run_id = self.__getLastRunID()
+        return run_id
+
+
+    def __getRunsSQL(self, where_str, order_str, lock_str):
+
+        # Retrieve these runs and lock the rows for update if needed
+        sqlcmd = "select Run_ID, CS_Site_ID, CS_Short_Name, CS_Site_Lat, CS_Site_Lon, CS_Site_Name, CS_Site_Type_Name, ERF_ID, SGT_Variation_ID, Rup_Var_Scenario_ID, Status, Status_Time, SGT_Host, SGT_Time, PP_Host, PP_Time, Comment, Last_User, Job_ID, Submit_Dir, Notify_User from %s r, CyberShake_Sites s, CyberShake_Site_Types t where s.CS_Site_ID = r.Site_ID and s.CS_Site_Type_ID = t.CS_Site_Type_ID %s %s %s" % (RUN_TABLE_NAME, where_str, order_str, lock_str)
+        if (self.database.execsql(sqlcmd) != 0):
+            self._printError("Unable to retrieve run.")
+            return None
+        else:
+            run_data = self.database.getResultsAll()
+            if ((run_data == None) or (len(run_data) == 0)):
+                #self._printError("Matching runs not found in DB.")
+                return None
+            else:
+                runs = []
+                for r in run_data:
+                    # Populate run object
+                    newrun = Run()
+                    newsite = Site()
+                    newrun.setRunID(r[0])
+                    newsite.setSiteID(r[1])
+                    newsite.setShortName(r[2])
+                    newsite.setLatitude(r[3])
+                    newsite.setLongitude(r[4])
+                    newsite.setLongName(r[5])
+                    newsite.setSiteType(r[6])
+                    newrun.setSite(newsite)
+                    newrun.setERFID(r[7])
+                    newrun.setSGTVarID(r[8])
+                    newrun.setRupVarID(r[9])
+                    newrun.setStatus(r[10])
+                    newrun.setStatusTime(r[11])
+                    newrun.setSGTHost(r[12])
+                    newrun.setSGTTime(r[13])
+                    newrun.setPPHost(r[14])
+                    newrun.setPPTime(r[15])
+                    newrun.setComment(r[16])
+                    newrun.setLastUser(r[17])
+                    newrun.setJobID(r[18])
+                    newrun.setSubmitDir(r[19])
+                    newrun.setNotifyUser(r[20])
+                    runs.append(newrun)
+
+                return runs
+
+        
+    def __getRuns(self, run, lock):
+        # Construct column and data strings for SQL command
+        fields = self.__getFieldDict(run, key=True)
+        where_str = ' and '
+        for f,v in fields.items():
+            if (where_str != ' and '):
+                where_str = where_str + ' and '
+            if (type(v) == str):
+                where_str = where_str + "r.%s='%s'" % (f, str(v))
+            else:
+                where_str = where_str + "r.%s=%s"  % (f, str(v))
+
+        if (lock == True):
+            lock_str = "for update"
+        else:
+            lock_str = ""
+
+        order_str = "order by r.Run_ID asc"
+        return self.__getRunsSQL(where_str, order_str, lock_str)
+
+
+    def __getRunsByState(self, state_list, lock):
+        # Construct column and data strings for SQL command
+        where_str = ' and ('
+        for state in state_list:
+            if (where_str != ' and ('):
+                where_str = where_str + ' or '
+            where_str = where_str + "r.Status='%s'" % (state)
+        where_str = where_str + ")"
+
+        if (lock == True):
+            lock_str = "for update"
+        else:
+            lock_str = ""
+
+        order_str = "order by r.Status_Time desc"
+        return self.__getRunsSQL(where_str, order_str, lock_str)
+
+
+    def __getCurves(self, run):
+        # Get the curves associated with this run
+        sqlcmd = "select t.IM_Type_ID, t.IM_Type_Measure, t.IM_Type_Value, t.Units from Hazard_Curves c, IM_Types t where c.IM_Type_ID = t.IM_Type_ID and c.Run_ID=%d order by t.IM_Type_Value asc" % (run.getRunID())
+        if (self.database.execsql(sqlcmd) != 0):
+            self._printError("Unable to retrieve hazard curves.")
+            return None
+        else:
+            curve_data = self.database.getResultsAll()
+            if ((curve_data == None) or (len(curve_data) == 0)):
+                #self._printError("Matching runs not found in DB.")
+                return None
+            else:
+                curves = []
+                for c in curve_data:
+                    # Populate curve object
+                    newcurve = Curve()
+                    newcurve.setIMID(c[0])
+                    newcurve.setIMMeasure(c[1])
+                    newcurve.setIMValue(c[2])
+                    newcurve.setIMUnits(c[3])
+                    curves.append(newcurve)
+
+                return curves
+
+
+    def __getRunStats(self, run):
+
+        # Count the number of peak amps
+        sqlcmd = "select count(*) from PeakAmplitudes p where p.Run_ID=%d" % \
+            (run.getRunID())
+        if (self.database.execsql(sqlcmd) != 0):
+            self._printError("Unable to count PSAs for run %s." % \
+                                 (run.getRunID()))
+            return None
+
+        psa_data = self.database.getResultsNext()
+        if (psa_data == None):
+            self._printError("Matching PSAs not found in DB.")
+            return None
+
+        # Get the hazard curves
+        curves = self.__getCurves(run)
+        if ((curves == None) or (len(curves) == 0)):
+            return None
+
+        # Populate runstats object
+        newrun = RunStats()
+        newrun.setSite(run.getSite())
+        newrun.setRunID(run.getRunID())
+        newrun.setERFID(run.getERFID())
+        newrun.setSGTVarID(run.getSGTVarID())
+        newrun.setRupVarID(run.getRupVarID())
+        newrun.setNumPSAs(psa_data[0])
+        newrun.setCurveList(curves)
+        return newrun
+
+
+    def __getNewSites(self):
+        # Get new sites
+        deleted_runs = "select Site_ID from %s r where r.Site_ID = s.CS_Site_ID and not r.Status='%s'" % (RUN_TABLE_NAME, DELETED_STATE)
+        complete_runs = "select Site_ID from %s r where r.Site_ID = s.CS_Site_ID and r.Status = '%s'" % (RUN_TABLE_NAME, DONE_STATE)
+        sqlcmd = "select CS_Site_ID, CS_Short_Name, CS_Site_Lat, CS_Site_Lon, CS_Site_Name from CyberShake_Sites s where not exists (%s) and not exists (%s) order by s.CS_Site_ID" % (deleted_runs, complete_runs)
+        if (self.database.execsql(sqlcmd) != 0):
+            self._printError("Unable to retrieve sites")
+            return None
+        else:
+            site_data = self.database.getResultsAll()
+            if ((len(site_data) == 0) or (site_data == None)):
+                #self._printError("Matching sites not found in DB.")
+                return None
+            else:
+                sites = []
+                for s in site_data:
+                    # Populate site object
+                    newsite = Site()
+                    newsite.setSiteID(s[0])
+                    newsite.setShortName(s[1])
+                    newsite.setLatitude(s[2])
+                    newsite.setLongitude(s[3])
+                    newsite.setLongName(s[4])
+                    sites.append(newsite)
+
+                return sites
+
+
+    def __getSiteByID(self, site_id):
+        # Get site info
+        sqlcmd = "select CS_Site_ID, CS_Short_Name, CS_Site_Lat, CS_Site_Lon, CS_Site_Name, CS_Site_Type_Name from CyberShake_Sites s, CyberShake_Site_Types t where s.CS_Site_ID=%d and s.CS_Site_Type_ID=t.CS_Site_Type_ID" % (site_id)
+        if (self.database.execsql(sqlcmd) != 0):
+            self._printError("Unable to retrieve site info for %d" % (site_id))
+            return None
+        else:
+            site_data = self.database.getResultsNext()
+            if (site_data == None):
+                #self._printError("Matching sites not found in DB.")
+                return None
+            else:
+                # Populate site object
+                newsite = Site()
+                newsite.setSiteID(site_data[0])
+                newsite.setShortName(site_data[1])
+                newsite.setLatitude(float(site_data[2]))
+                newsite.setLongitude(float(site_data[3]))
+                newsite.setLongName(site_data[4])
+                newsite.setSiteType(site_data[5])
+
+                return newsite
+
+
+    def __updateRun(self, run):
+        # Construct column and data strings for SQL command
+        fields = self.__getFieldDict(run)
+        assign_str = ""
+        for f,v in fields.items():            
+            if (len(assign_str) > 0):
+                assign_str = assign_str + ', '
+            if (type(v) == str):
+                assign_str = assign_str + str(f) + "=" + "'" + str(v) + "'"
+            else:
+                assign_str = assign_str + str(f) + "=" + str(v)
+                
+        # Execute update
+        sqlcmd = "update %s s set %s where s.Run_ID=%d" % \
+            (RUN_TABLE_NAME, assign_str, run.getRunID())
+        if (self.database.execsql(sqlcmd) != 0):
+            self._printError("Unable to update run for run_id %d." % \
+                                 (run.getRunID()))
+            return 1
+
+        return 0
+
+
+    def __performComparison(self, oldrun, newrun):
+        
+        # Verify new state is valid state transition from old state
+        if (not newrun.getStatus() in STATUS_STD[oldrun.getStatus()]):
+            self._printError("Invalid new state %s, expecting one of %s." % \
+                             (newrun.getStatus(), \
+                                  str(STATUS_STD[oldrun.getStatus()])))
+            return 1
+
+        return 0
+
+
+    def __performValidation(self, newrun):
+        
+        # Verify new state valid
+        if (not newrun.getStatus() in STATUS_STD.keys()):
+            self._printError("Invalid new state %s, expecting one of %s." % \
+                             (newrun.getStatus(), str(STATUS_STD.keys())))
+            return 1
+        
+        # Verify appropriate host has been specified
+        if (newrun.getStatus() in SGT_STATES):
+            if ((newrun.getSGTHost() == HOST_LIST[0]) or \
+                    (newrun.getSGTHost() == None)):
+                self._printError("Run is in a SGT state yet no SGT host specified.")
+                return 1
+            if (newrun.getSGTTime() == None):
+                self._printError("Run is in a SGT state yet no SGT time specified.")
+                return 1
+
+        if (newrun.getStatus() in PP_STATES):
+            if ((newrun.getPPHost() == HOST_LIST[0]) or \
+                    (newrun.getPPHost() == None)):
+                self._printError("Run is in a PP state yet no PP host specified.")
+                return 1
+            if (newrun.getPPTime() == None):
+                self._printError("Run is in a PP state yet no PP time specified.")
+                return 1
+
+        return 0
+
+
+    def __performCheckAndFill(self, run):
+
+        site = run.getSite()
+
+        # Get Site ID if needed
+        if (site.getSiteID() == None):
+            if (site.getShortName() != None):
+                site_id = self.__getSiteID(site.getShortName())
+                if (site_id == 0):
+                    self._printError("Unable to find id of site %s" % \
+                                         (site.getShortName()))
+                    return None
+                site.setSiteID(site_id)
+                run.setSite(site)
+            else:
+                self._printError("No site information provided in run!")
+                return None
+
+        # Set erf_id to the default if not specified
+        if (run.getERFID() == None):
+            id = self.__getLatestID("ERF")
+            if (id == 0):
+                return None
+            else:
+                run.setERFID(id)
+        else:
+            if (not self.__isValidID("ERF", run.getERFID())):
+                return None
+        
+        # Set sgt_var_id to the default if not specified
+        if (run.getSGTVarID() == None):
+            id = self.__getLatestID("SGT_VAR")
+            if (id == 0):
+                return None
+            else:
+                run.setSGTVarID(id)
+        else:
+            if (not self.__isValidID("SGT_VAR", run.getSGTVarID())):
+                return None
+                
+        # Set rup_var_id to the default if not specified
+        if (run.getRupVarID() == None):
+            id = self.__getLatestID("RUP_VAR")
+            if (id == 0):
+                return None
+            else:
+                run.setRupVarID(id)
+        else:
+            if (not self.__isValidID("RUP_VAR", run.getRupVarID())):
+                return None
+        
+        if (run.getStatus() == None):
+            run.setStatus(START_STATE)
+        elif (not run.getStatus() in STATUS_STD.keys()):
+            self._printError("State %s specified, was expecting one of %s" % \
+                                 (run.getStatus(), str(STATUS_STD.keys())))
+            return None
+        run.setStatusTimeCurrent()
+        
+        if (run.getSGTHost() == None):
+            run.setSGTHost(HOST_LIST[0])
+        elif (not run.getSGTHost() in HOST_LIST):
+            self._printError("SGT Host %s, was expecting one of %s" % \
+                                 (run.getSGTHost(), HOST_LIST))
+            return None
+        run.setSGTTimeCurrent()
+
+        if (run.getPPHost() == None):
+            run.setPPHost(HOST_LIST[0])
+        elif (not run.getPPHost() in HOST_LIST):
+            self._printError("PP Host %s, was expecting one of %s" % \
+                                 (run.getPPHost(), HOST_LIST))
+            return None
+        run.setPPTimeCurrent()
+
+        if (run.getComment() == None):
+            run.setComment("")
+
+        if (run.getLastUser() == None):
+            run.setLastUserCurrent()
+        elif (not run.getLastUser() in USER_LIST):
+            self._printError("User %s specified, was expecting one of %s" % \
+                                 (run.getLastUser(), USER_LIST))
+            return None
+            
+        if (run.getJobID() == None):
+            run.setJobID("")
+
+        if (run.getSubmitDir() == None):
+            run.setSubmitDir("")
+
+        if (run.getNotifyUser() == None):
+            run.setNotifyUser("")
+        
+        return run
+
+
+    def createRun(self, run):
+
+        run.setRunID(None)
+
+        run = self.__performCheckAndFill(run)
+        if (run == None):
+            return None
+
+        # Insert run and save run_id
+        run_id = self.__insertRun(run)
+        # Result is the run_id, or 0 on error
+        if (run_id == 0):
+            return None
+        else:
+            pass
+        
+        run.setRunID(run_id)
+        return run
+
+
+    def createRunBySite(self, site_name):
+
+        if (site_name == None):
+            return None
+        
+        run = Run()
+        site = Site()
+        site.setShortName(site_name)
+        run.setSite(site)
+        return (self.createRun(run))
+    
+
+    def createRunByParam(self, site_name, erf_id, sgt_var_id, rup_var_id):
+        if ((site_name == None) or (erf_id == None) or \
+                (sgt_var_id == None) or (rup_var_id == None)):
+            return None
+        
+        run = Run()
+        site = Site()
+        site.setShortName(site_name)
+        run.setSite(site)
+        run.setERFID(erf_id)
+        run.setSGTVarID(sgt_var_id)
+        run.setRupVarID(rup_var_id)
+        return (self.createRun(run))
+
+
+    def getRuns(self, run, lock=False):
+
+        site = run.getSite()
+        # Get Site ID if needed
+        if (site.getSiteID() == None):
+            if (site.getShortName() != None):
+                site_id = self.__getSiteID(site.getShortName())
+                if (site_id == 0):
+                    self._printError("Unable to find id of site %s" % \
+                                         (site.getShortName()))
+                    return None
+                site.setSiteID(site_id)
+                run.setSite(site)
+
+        # Query existing data for this run query
+        runs = self.__getRuns(run, lock)
+        if ((runs == None) or (len(runs) == 0)):
+            return None
+
+        return runs
+
+
+    def getRunByID(self, run_id, lock=False):
+
+        if (run_id == None):
+            self._printError("Requires a run_id to be specified.")
+            return None
+
+        run = Run()
+        run.setRunID(run_id)
+
+        # Query existing data for this run_id
+        runs = self.getRuns(run, lock)
+        if (runs == None):
+            return None
+        
+        return runs[0]
+
+
+    def getRunsByParam(self, site, erf_id, sgt_var_id, rup_var_id, lock=False):
+        if ((site == None) or (erf_id == None) or \
+                (sgt_var_id == None) or (rup_var_id == None)):
+            self._printError("Requires site name, erf, sgt_var, and rup_var.")
+            return None
+
+        run = Run()
+        site = Site()
+        site.setShortName(site)
+        run.setSite(site)
+        run.setERFID(erf_id)
+        run.setSGTVarID(sgt_var_id)
+        run.setRupVarID(rup_var_id)
+        
+        # Query existing data for this combination
+        runs = self.getRuns(run, lock)
+        if (runs == None):
+            return None
+
+        return runs[0]
+
+
+    def getRunsByState(self, state_list, lock=False):
+
+        if ((state_list == None) or (type(state_list) != type([]))):
+            self._printError("State list must be a list.")
+            return None
+
+        # Verify that the search states are valid
+        for state in state_list:
+            if (not state in STATUS_STD.keys()):
+                self._printError("State '%s' is not a valid." % (state))
+                return None
+
+        # Query runs in these states
+        runs = self.__getRunsByState(state_list, lock)
+
+        return runs
+
+
+    def getSiteNameByID(self, site_id):
+        if (site_id == None):
+            return 1
+
+        return (self.__getSiteName(site_id))
+
+
+    def getSiteByID(self, site_id):
+        if (site_id == None):
+            return None
+
+        return (self.__getSiteByID(site_id))
+
+
+    def getNewSites(self):
+        return self.__getNewSites()
+
+
+    def getParamIDs(self, param):
+        return (self.__getParamIDs(param))
+
+
+    def updateRun(self, run, orig_run = None):
+        if (run.getRunID() == None):
+            return 1
+
+        # User wants field comparison on this run vs original run
+        if (orig_run != None):
+
+            # Run comparison checks
+            if (self.__performComparison(orig_run, run) != 0):
+                self._printError("Comparison of run and old_run failed.")
+                return 1
+            
+        # Run validation checks
+        if (self.__performValidation(run) != 0):
+            self._printError("Validation of run failed.")
+            return 1
+
+        # Update timestamps
+        run.setStatusTimeCurrent()
+        if (run.getStatus() in SGT_STATES):
+            run.setSGTTimeCurrent()
+        elif (run.getStatus() in PP_STATES):
+            run.setPPTimeCurrent()
+
+        # Update last user
+        # Disabled because web-access sets user to 'apache'
+        #run.setLastUserCurrent()
+
+        # Execute update
+        retval = self.__updateRun(run)
+        if (retval != 0):
+            return 1
+        else:
+            pass
+
+        return 0
+    
+
+    def deleteRunByID(self, run_id, last_user=None):
+        if (run_id == None):
+            self._printError("No run_id specified.")
+            return 1
+        run = Run()
+        run.setRunID(run_id)
+        run.setStatus(DELETED_STATE)
+        run.setStatusTimeCurrent()
+        if (last_user == None):
+            run.setLastUserCurrent()
+        else:
+            if (not last_user in USER_LIST):
+                self._printError("User_id %s, expecting one of %s." % \
+                                     (last_user, str(USER_LIST)))
+                return 1
+            run.setLastUser(last_user)
+        return self.updateRun(run)
+
+
+    def getRunStatsByID(self, run_id):
+
+        if (run_id == None):
+            self._printError("Requires a run_id to be specified.")
+            return None
+
+        run = Run()
+        run.setRunID(run_id)
+
+        # Query existing data for this run_id
+        runs = self.getRuns(run, lock=False)
+        if (runs == None):
+            return None
+
+        # Collect statistics
+        runstat = self.__getRunStats(runs[0])
+
+        return runstat


Property changes on: SwiftApps/Cybershake/app/post/RunManager/RunManager.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/RunStats.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/RunStats.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/RunStats.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,151 @@
+#!/usr/bin/env python
+
+# Imports
+import sys
+import os
+import pwd
+import time
+from Config import *
+from Site import *
+from Curve import *
+
+
+class RunStats:
+    run_id = None
+    #site_id = None
+    #site = None
+    site_obj = None
+    erf_id = None
+    sgt_var_id = None
+    rup_var_id = None
+    num_psa = None
+    num_curves = None
+    curve_list = None
+
+
+    def __init__(self):
+        self.run_id = None
+        self.site_obj = Site()
+        self.erf_id = None
+        self.sgt_var_id = None
+        self.rup_var_id = None
+        self.num_psa = None
+        self.num_curves = None
+        self.curve_list = None
+
+    def copy(self, obj):
+        self.run_id = obj.run_id
+        self.site_obj = obj.site_obj
+        self.erf_id = obj.erf_id
+        self.sgt_var_id = obj.sgt_var_id
+        self.rup_var_id = obj.rup_var_id
+        self.num_psa = obj.num_psa
+        self.num_curves = obj.num_curves
+        self.curve_list = obj.curve_list
+
+
+    #@staticmethod
+    def formatHeader(self):
+        headers = ["Run ID", "Site", "ERF ID", "SGT Var ID", "Rup Var ID", \
+                       "Num PSA", "Num Curves",]
+        return headers
+
+    def formatData(self):
+        if (self.site_obj != None):
+            site_name = self.site_obj.getShortName()
+            site_id = self.site_obj.getSiteID()
+        else:
+            site_name = None
+            site_id = None
+
+        data = [str(self.run_id), \
+                    "%s (%s)" % (str(site_name), str(site_id)), \
+                    str(self.erf_id), \
+                    str(self.sgt_var_id), \
+                    str(self.rup_var_id), \
+                    str(self.num_psa), \
+                    str(self.num_curves),]
+        return data
+
+    def getRunID(self):
+        return self.run_id
+
+    def setRunID(self, run_id):
+        if (run_id == None):
+            self.run_id = run_id
+        else:
+            self.run_id = int(run_id)
+
+    def getSite(self):
+        return self.site_obj
+
+    def setSite(self, site_obj):
+        self.site_obj = site_obj
+
+    def getERFID(self):
+        return self.erf_id
+
+    def setERFID(self, erf_id):
+        if (erf_id == None):
+            self.erf_id = erf_id
+        else:
+            self.erf_id = int(erf_id)
+
+    def getSGTVarID(self):
+        return self.sgt_var_id
+
+    def setSGTVarID(self, sgt_var_id):
+        if (sgt_var_id == None):
+            self.sgt_var_id = sgt_var_id
+        else:
+            self.sgt_var_id = int(sgt_var_id)
+
+    def getRupVarID(self):
+        return self.rup_var_id
+
+    def setRupVarID(self, rup_var_id):
+        if (rup_var_id == None):
+            self.rup_var_id = rup_var_id
+        else:
+            self.rup_var_id = int(rup_var_id)
+
+    def getNumPSAs(self):
+        if (self.num_psa == None):
+            return 0
+        else:
+            return self.num_psa
+
+    def setNumPSAs(self, num_psa):
+        self.num_psa = int(num_psa)
+
+    def getNumCurves(self):
+        if (self.curve_list == None):
+            return 0
+        else:
+            return len(self.curve_list)
+
+    #def setNumCurves(self, num_curves):
+    #    self.num_curves = int(num_curves)
+
+    def getCurveList(self):
+        return self.curve_list
+
+    def setCurveList(self, curve_list):
+        self.curve_list = curve_list
+            
+    def dumpToScreen(self):
+        if (self.site_obj != None):
+            site_name = self.site_obj.getShortName()
+            site_id = self.site_obj.getSiteID()
+        else:
+            site_name = None
+            site_id = None
+
+        print "Run ID:\t\t %s" % (str(self.run_id))
+        print "Site:\t\t %s (id=%s)" % (str(site_name), str(site_id))
+        print "Params:\t\t erf=%s sgt_var=%s rup_var=%s" % \
+            (str(self.erf_id), str(self.sgt_var_id), str(self.rup_var_id))
+        print "Stats:\t\t num_psa=%s num_curves=%s" % \
+            (str(self.num_psa), str(self.getNumCurves()))
+        return 0
+                                   


Property changes on: SwiftApps/Cybershake/app/post/RunManager/RunStats.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/SendStatus.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/SendStatus.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/SendStatus.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,173 @@
+#!/usr/bin/env python
+
+
+# Imports
+from RunManager import *
+from Mailer import *
+
+
+# Global vars
+class info:
+    pass
+
+
+def doSGT(args):
+    global info
+
+    stage = args[0]
+    stages = ["preCVM", "vMeshGen", "vMeshMerge", "sgtGenXY", "sgtMergeXY"]
+    subject = "Status - Run %d (%s) %s Workflow" % \
+        (info.run_id, info.site, info.workflow) 
+    msg = "Workflow is currently on this stage:\r\n\r\n"
+
+    if (not stage in stages):
+        print "Stage " + stage + " not found"
+        return 1
+
+    numstage = len(stages)
+    istage = stages.index(stage)
+    for i in range(0, numstage):
+        if (i <= istage):
+            msg = msg + stages[i] + ": Complete\r\n"
+        else:
+            msg = msg + stages[i] + ": Scheduled\r\n"
+    
+    # Send the email
+    m = Mailer()
+    m.send(info.notify_to, subject, msg)
+
+    return 0
+
+
+def doPP(args):
+    global info
+
+    stage = args[0]
+    daxnum = int(args[1])
+    maxdax = int(args[2])
+    stages = ["CheckSgt", "DAX", "DBWrite"]
+    subject = "Status - Run %d (%s) %s Workflow" % \
+        (info.run_id, info.site, info.workflow) 
+    msg = "Workflow is currently on this stage:\r\n\r\n"   
+    
+    if (not stage in stages):
+        print "Stage " + stage + " not found"
+        return 1
+
+    if (daxnum > maxdax):
+        print "DAX number %d is greater than max DAX %d" % (daxnum, maxdax)
+        return 1
+
+    numstage = len(stages)
+    istage = stages.index(stage)
+    for i in range(0, numstage):
+        if (i <= istage):
+            if (i == istage) and (i == 1):
+                msg = msg + stages[i] + ": Number " + str(daxnum) + \
+                    " of approx " + str(maxdax) + " completed successfully\r\n"
+            else:
+                msg = msg + stages[i] + ": Complete\r\n"
+        else:
+            msg = msg + stages[i] + ": Scheduled\r\n"
+
+    # Send the email
+    m = Mailer()
+    m.send(info.notify_to, subject, msg)
+
+    return 0
+
+
+# Workflow definitions
+# Mapping of workflow name -> tuple (number of arguments, handler)
+WORKFLOWS = {"SGT":(1, doSGT), \
+             "PP":(3, doPP)}
+
+
+def init():
+    global info
+
+    # Get number of command-line arguments
+    argc = len(sys.argv)
+    
+    # Parse command line arguments
+    if (argc < 4):
+        print "Usage: " + sys.argv[0] + " <run_id> <workflow> <stage info>"
+        print "Example: " + sys.argv[0] + " 213 SGT preCVM"
+        print "Example: " + sys.argv[0] + " 376 PP CheckSgt 12 80"
+        return 1
+            
+    info.run_id = int(sys.argv[1])
+    info.workflow = sys.argv[2]
+    info.stage_info = sys.argv[3:]
+
+    print "Configuration:"
+    print "Site:\t\t" + str(info.run_id)
+    print "Workflow:\t" + info.workflow
+    print "Stage Info:\t" + str(info.stage_info)
+
+    # Check that the workflow is valid and the correct number of 
+    # arguments were supplied
+    try:
+        wfinfo = WORKFLOWS[info.workflow]
+        numargs = wfinfo[0]
+        if (len(info.stage_info) != numargs):
+            print "Workflow " + info.workflow + \
+                " requires " + str(numargs) + " argument(s)"
+            return 1
+    except:
+        print "Unable to find " + info.workflow
+        return 1        
+    
+    # Load the notify list from the DB
+    rm = RunManager(readonly=True)
+    rm.useHTML(False)
+
+    run = rm.getRunByID(info.run_id)
+    if (run == None):
+        print "Failed to retrieve run %d from DB." (info.run_id)
+        return 1
+
+    print "Notification List:"
+    info.notify_to = run.getNotifyUserAsList()
+    if ((info.notify_to == None) or (len(info.notify_to) == 0)):
+        print " No users specified - notifications disabled"
+        info.notify_to = []
+    else:
+        for n in info.notify_to:
+            if ((n == None) or (n == "")):
+                print " Invalid user list specified - notifications disabled"
+                info.notify_to = []
+                break
+            else:
+                print " " + n
+
+    # Save site name
+    info.site = run.getSite().getShortName()
+
+    return 0
+
+
+def main():
+    global info
+
+    if (len(info.notify_to) > 0):
+        # Execute the workflow handler
+        retcode = WORKFLOWS[info.workflow][1](info.stage_info)
+        if (retcode != 0):
+            print "Error sending email notification"
+            return 1
+
+    return 0
+
+
+def cleanup():
+    return 0
+
+
+if __name__ == '__main__':
+    if (init() != 0):
+        sys.exit(1)
+    if (main() != 0):
+        sys.exit(1)
+    cleanup()
+    sys.exit(0)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/SendStatus.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/Site.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/Site.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/Site.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,100 @@
+#!/usr/bin/env python
+
+# Imports
+import sys
+import os
+import pwd
+import time
+from Config import *
+
+
+class Site:
+    site_id = None
+    site_short = None
+    site_long = None
+    lat = None
+    lon = None
+    site_type = None
+
+    def __init__(self):
+        self.site_id = None
+        self.site_short = None
+        self.site_long = None
+        self.lat = None
+        self.lon = None
+        self.site_type = None
+
+    def copy(self, obj):
+        self.site_id = obj.site_id
+        self.site_short = obj.site_short
+        self.site_long = obj.site_long
+        self.lat = obj.lat
+        self.lon = obj.lon
+        self.site_type = obj.site_type
+
+    #@staticmethod
+    def formatHeader(self):
+        headers = ["Site ID", "Site Name", "Lat", "Lon", "Desc"]
+        return headers
+
+    def formatData(self):
+        data = [str(self.site_id), \
+                    str(self.site_short), \
+                    str(self.lat), \
+                    str(self.lon), \
+                    str(self.site_long),]
+        return data
+
+    def getSiteID(self):
+        return self.site_id
+
+    def setSiteID(self, site_id):
+        if (site_id == None):
+            self.site_id = site_id
+        else:
+            self.site_id = int(site_id)
+
+    def getLongName(self):
+        return self.site_long
+
+    def setLongName(self, site_long):
+        if (site_long == None):
+            self.site_long = site_long
+        else:
+            self.site_long = str(site_long)
+
+    def getShortName(self):
+        return self.site_short
+
+    def setShortName(self, site_short):
+        if (site_short == None):
+            self.site_short = site_short
+        else:
+            self.site_short = str(site_short)
+
+    def getLatitude(self):
+        return self.lat
+
+    def setLatitude(self, lat):
+        if (lat == None):
+            self.lat = lat
+        else:
+            self.lat = float(lat)
+
+    def getLongitude(self):
+        return self.lon
+
+    def setLongitude(self, lon):
+        if (lon == None):
+            self.lon = lon
+        else:
+            self.lon = float(lon)
+
+    def getSiteType(self):
+        return self.site_type
+
+    def setSiteType(self, site_type):
+        if (site_type == None):
+            self.site_type = site_type
+        else:
+            self.site_type = str(site_type)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/Site.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/UpdateRunState.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/UpdateRunState.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/UpdateRunState.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,140 @@
+#!/usr/bin/env python
+
+
+# General imports
+from Config import *
+from RunManager import *
+
+
+# Constants
+
+# Map of acceptable run states for each reported workflow state
+RUN_STATES = {"SGT_INIT":["Initial"], \
+                  "SGT_START":["SGT Started"], \
+                  "SGT_END":[], \
+                  "PP_INIT":["SGT Generated"], \
+                  "PP_START":["PP Started"], \
+                  "PP_END":[]}
+
+# Map of workflow state to run state. Assumes no errors were encountered.
+STATE_MAP = {"SGT_INIT":"Initial", \
+                 "SGT_START":"SGT Started", \
+                 "SGT_END":"SGT Generated", \
+                 "PP_INIT":"SGT Generated", \
+                 "PP_START":"PP Started", \
+                 "PP_END":"Curves Generated"}
+
+# Globals
+class info:
+    pass
+
+
+def init():
+    global info
+    
+    # Get number of command-line arguments
+    argc = len(sys.argv)
+    
+    # Check command line arguments
+    if (argc < 4):
+        print "Usage: " + sys.argv[0] + " <run_id> <old_state> <new_state>"
+        print "Example: " + sys.argv[0] + " 213 SGT_START SGT_END"
+        print "Valid Run States: " + str(RUN_STATES.keys())
+        return 1
+
+    # Parse command line args and options
+    info.run_id = int(sys.argv[1])
+    info.old_state = sys.argv[2]
+    info.new_state = sys.argv[3]
+    
+    print "Configuration:"
+    print "Run ID:\t\t" + str(info.run_id)
+    print "Old State:\t" + info.old_state
+    print "New State:\t" + info.new_state + "\n"
+
+    if (info.old_state == info.new_state):
+        print "No state change specified."
+        return 1
+
+    if (not info.old_state in RUN_STATES.keys()):
+        print "Old state '%s', expecting one of '%s'" % \
+            (info.old_state, str(RUN_STATES.keys()))
+        return 1
+
+    if (not info.new_state in RUN_STATES.keys()):
+        print "New state '%s', expecting one of '%s'" % \
+            (info.old_state, str(RUN_STATES.keys()))
+        return 1
+
+    if (not STATE_MAP[info.new_state] in STATUS_STD[STATE_MAP[info.old_state]]):
+        print "Invalid state change requested, from '%s' to '%s'" % \
+            (info.old_state, info.new_state)
+        return 1
+
+    return 0
+
+
+
+def main():
+    global info
+
+    rm = RunManager(readonly=False)
+    rm.useHTML(False)
+
+    old_run_states = RUN_STATES[info.old_state]
+    new_run_state = STATE_MAP[info.new_state]
+    
+    # Retrieve existing run info and save it
+    run = rm.getRunByID(info.run_id, lock=True)
+    if (run == None):
+        print "No record for run_id %d found in DB." % (info.run_id)
+        return 1
+
+    # Check that we're in the expected state
+    if (not run.getStatus() in old_run_states):
+        rm.rollbackTransaction()
+        print "Run has state '%s', was expecting to find one of %s" % \
+            (run.getStatus(), str(old_run_states))
+        return 1
+    
+    saverun = Run()
+    saverun.copy(run)
+
+    # Update the state
+    run.setStatus(new_run_state)
+    run.setStatusTimeCurrent()
+
+    if ((info.new_state == "SGT_END") or (info.new_state == "PP_END")):
+        # Clear the Job_ID at end of workflow, update the comment
+        run.setJobID("")
+        run.setComment("Workflow completed successfully")
+
+    print "Updated Record:"
+    run.dumpToScreen()
+
+    # Perform update
+    if (rm.updateRun(run, orig_run=saverun) != 0):
+        rm.rollbackTransaction()
+        print "Run update failed for run_id %d (site %s)." % \
+            (run.getRunID(), run.getSite().getShortName())
+        return 1
+    else:
+        rm.commitTransaction()
+        print ""
+        print "Run successfully updated for run_id %d (site %s)." % \
+            (run.getRunID(), run.getSite().getShortName())
+
+    return 0
+
+
+def cleanup():
+    return 0
+    
+    
+if __name__ == '__main__':
+    if (init() != 0):
+        sys.exit(1)
+    retval = main()
+    cleanup()
+    sys.exit(retval)
+    


Property changes on: SwiftApps/Cybershake/app/post/RunManager/UpdateRunState.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/website/CyberShake-STD.png
===================================================================
(Binary files differ)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/website/CyberShake-STD.png
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/HTMLLib.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/HTMLLib.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/HTMLLib.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,230 @@
+#!/usr/bin/env python
+
+import cgi
+
+# Enable python stack trace output to HTML
+import cgitb; cgitb.enable() 
+
+# Constants
+
+# Main web page
+MAIN_PAGE = "runmanager.py"
+WIKI_PAGE = "http://scecdata.usc.edu/wiki/index.php?title=CyberShake_2009_Production_Runs"
+
+
+class HTMLPage:
+    def header(self, contentType = 'text/html'):
+        print "Content-Type: %s\n" % (contentType)
+        print "<html>"
+        print "<head>"
+        # Set params here
+        print "<title>CyberShake Run Manager</title>"
+        print "</head>"
+        print "<body>"
+        return 0
+
+
+    def addRedirect(self, redirect):
+        print "<meta http-equiv=\"refresh\" content=\"3; URL=%s\">" % (redirect)
+        return 0
+
+
+    def pageTitle(self):
+        print "<h2>CyberShake Run Manager</h2>"
+        #print "<hr>"                 
+        return 0
+
+
+    def menu(self, options):
+        print "<p>Options: "
+        for o in options:
+            print "<A HREF=\"%s\">%s</A> " % (o[0], o[1])
+        print "<p><hr>"
+        return 0
+
+
+    def sectionTitle(self, title):
+        print "<p><h3>%s</h3></p>" % (title)
+        return 0
+        
+    
+    def footer(self, show_details = True):
+        if (show_details):
+            print "<hr>"
+            print "© 2009 <a href=\"http://www.scec.org\">Southern California Earthquake Center</a>, USC<br>"
+            print "Maintained by <a href=\"mailto:patrices at usc.edu\">Patrick Small</a><p>"
+        print "</body>"
+        print "</html>"            
+        return 0
+
+
+class HTMLAction:
+    label = None
+    url = None
+    arg_list = None
+
+    def __init__(self, label, url, arg_list):
+        self.label = label
+        self.url = url
+        self.arg_list = arg_list
+
+    def getLabel(self):
+        return self.label
+    
+    def getURL(self):
+        return self.url
+
+    def getArgList(self):
+        return self.arg_list
+    
+
+class HTMLTable:
+    caption = None
+    action_list = None
+    selection = False
+    allow_wrap = True
+    width = None
+    
+    def __init__(self):
+        self.caption = None
+        self.action_list = None
+        self.selection = False
+        self.allow_wrap = True
+        self.width = 1400
+        self.max_col_width = 60
+
+
+    def __splitString(self, str):
+        string_list = []
+
+        has_space = str.find(" ")
+        has_slash = str.find("/")
+
+        if (has_space != -1):
+            sep = " "
+        elif (has_slash != -1):
+            sep = "/"
+        else:
+            longstr = str
+            while (len(longstr) > self.max_col_width):
+                string_list.append(longstr[0:self.max_col_width])
+                longstr = longstr[self.max_col_width:]
+            if (len(longstr) > 0):
+                string_list.append(longstr)
+            return string_list
+        
+        line = ""
+        tokens = str.split(sep)
+        i = 0
+        for t in tokens:
+            # If line will be excessively long, write out current line
+            if (len(line) + len(t) > self.max_col_width + 5):
+                string_list.append(line)
+                line = ""
+            # Only write separator for tokens 2-N
+            if ((i == 0) and (len(t) == 0)):
+                pass
+            else:
+                line = line + sep + t
+            # If line exceeds max size, write out current line
+            if (len(line) > self.max_col_width):
+                string_list.append(line)
+                line = ""
+            i = i + 1
+
+        if (line != ""):
+            string_list.append(line)
+        return string_list
+    
+        
+    def addCaption(self, caption):
+        self.caption = caption
+        return 0
+
+
+    def addActionList(self, action_list):
+        self.action_list = action_list
+        return 0
+
+
+    def setSelection(self, flag):
+        self.selection = flag
+
+
+    def allowWrap(self, flag):
+        self.allow_wrap = flag
+        
+
+    def setWidth(self, width):
+        self.width = width
+
+        
+    def display(self, data_list):
+        if (self.width != None):
+            print "<table width=\"1400\" border=\"1\">"
+        else:
+            print "<table border=\"1\">"
+
+        if (self.caption != None):
+            print "<center><caption>%s</caption></center>" % (self.caption)
+
+        if (len(data_list) > 0):
+
+            headers = []
+            if (self.selection == True):
+                headers.append("Select")
+            headers = headers + data_list[0].formatHeader()
+            
+            # Display column headers
+            print "<tr bgcolor=\"DarkSalmon\" bordercolor=\"Black\">"
+            for h in headers:
+                print "<th scope=\"col\">%s</th>" % (h)
+            if (self.action_list != None):
+                print "<th scope=\"col\">%s</th>" % ("Actions")           
+            print "</tr>"
+
+            # Display data
+            rownum = 0
+            for datum in data_list:
+                if (rownum % 2 == 0):
+                    print "<tr style=\"font-size:80%;background:Beige\">"
+                else:
+                    print "<tr style=\"font-size:80%\">"
+
+                row = datum.formatData()
+
+                if (self.selection == True):
+                    print "<td><center><input type=checkbox name=\"key\" value=\"%s\"></center></td>" % (row[0])
+                    
+                for c in row:
+                    if (c == ""):
+                        print "<td>None</td>"
+                    elif ((self.allow_wrap == True) and (len(c) > self.max_col_width) and (c[0] != '<')):
+                        print "<td style=\"font-size:100%\">"
+                        string_list = self.__splitString(c)
+                        for substr in string_list:
+                            print "%s<br>" % (substr)
+                        print "</td>"
+                    else:
+                        print "<td>%s</td>" % (c)
+
+                if (self.action_list != None):
+                    print "<td><center>"
+                    for action in self.action_list:
+                        if (action.getArgList() == None):
+                            argstr = ""
+                        else:
+                            argstr = "&" + action.getArgList()
+                        print "<a href=\"%s?key=%s%s\">%s</a>" % \
+                              (action.getURL(), row[0], argstr, action.getLabel())
+                    print "</center></td>"
+
+                print "</tr>"
+                rownum = rownum + 1                
+
+        else:
+            print "<tr><td><center>No data</center></td></tr>"
+
+        print "</table>"
+        return 0
+


Property changes on: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/HTMLLib.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/addrun.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/addrun.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/addrun.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,133 @@
+#!/usr/bin/env python
+
+# Add RunManager modules to PYTHONPATH
+import sys
+sys.path.append('/home/scec-00/patrices/code/trunk/RunManager/')
+
+import cgi
+from RunManager import *
+from HTMLLib import *
+
+
+# Enable python stack trace output to HTML
+import cgitb; cgitb.enable() 
+
+
+# Globals
+rm = None
+
+
+def init():
+    global rm
+
+    rm = RunManager(readonly=False)
+    if (not rm.isValid()):
+        print "Unable to open database connection.<p>"
+        return 1
+    
+    rm.useHTML(True)
+
+    return 0
+
+
+def main():
+    global rm
+
+    page = HTMLPage()
+    page.header()
+    page.pageTitle()
+    page.menu([[MAIN_PAGE, "Main"],])
+    page.sectionTitle("Add Run")
+
+
+    form = cgi.FieldStorage() # instantiate only once!
+
+    # Populate run object with common values
+    run = Run()
+    if form.has_key("erf_id") and form["erf_id"].value != "":
+        run.setERFID(int(form["erf_id"].value))
+    if form.has_key("sgt_var_id") and form["sgt_var_id"].value != "":
+        run.setSGTVarID(int(form["sgt_var_id"].value))
+    if form.has_key("rup_var_id") and form["rup_var_id"].value != "":
+        run.setRupVarID(int(form["rup_var_id"].value))
+    if form.has_key("status") and form["status"].value != "":
+        run.setStatus(form["status"].value)
+    if form.has_key("status_time") and form["status_time"].value != "":
+        run.setStatusTime(form["status_time"].value)
+    if form.has_key("sgt_host") and form["sgt_host"].value != "":
+        run.setSGTHost(form["sgt_host"].value)
+    if form.has_key("pp_host") and form["pp_host"].value != "":
+        run.setPPHost(form["pp_host"].value)
+    if form.has_key("comment") and form["comment"].value != "":
+        run.setComment(form["comment"].value)
+    if form.has_key("last_user") and form["last_user"].value != "":
+        run.setLastUser(form["last_user"].value)
+    if form.has_key("job_id") and form["job_id"].value != "":
+        run.setJobID(form["job_id"].value)
+    if form.has_key("submit_dir") and form["submit_dir"].value != "":
+        run.setSubmitDir(form["submit_dir"].value)
+    if form.has_key("notify_user") and form["notify_user"].value != "":
+        run.setNotifyUser(form["notify_user"].value)
+
+    # Determine which sites to create run
+    site_id_list = []
+    site_name_list = []
+    if form.has_key("site_id"):
+        if  (type(form["site_id"]) != type([])):
+            if (form["site_id"].value != ""):
+                site_id_list = [form["site_id"].value,]
+        else:
+            site_id_list = form.getlist("site_id")
+    if form.has_key("site"):
+        if  (type(form["site"]) != type([])):
+            if (form["site"].value != ""):
+                site_name_list = [form["site"].value,]
+        else:
+            site_name_list = form.getlist("site")
+
+    i = 0
+    site_map = {}
+    for site in site_id_list:
+        site_map[site] = site_name_list[i]
+        i = i + 1
+
+    for id, name in site_map.items():
+        site = Site()
+        site.setSiteID(int(id))
+        site.setShortName(name)
+        run.setSite(site)
+
+        # Create the run
+        run_id = rm.createRun(run)
+        if (run_id == None):
+            print "Run insert failed for site %s. Performing rollback.<p>" % (run.getSite().getShortName())
+            rm.rollbackTransaction()
+            break
+        else:
+            print "Run successfully added for site %s.<p>" % (run.getSite().getShortName())
+            
+    # Commit change
+    rm.commitTransaction()
+
+    if (len(site_map.keys()) == 0):
+        print "No sites specified.<p>"
+        
+    print "If page does not redirect in a few seconds, please click the link above.<p>"
+    print "Please wait...<p>"
+    
+    page.addRedirect(MAIN_PAGE)
+    page.footer()
+    
+    return 0
+
+
+def cleanup():
+    return 0
+
+
+if __name__ == '__main__':
+    if (init() != 0):
+        sys.exit(1)
+    main()
+    cleanup()
+    sys.exit(0)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/addrun.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/deleterun.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/deleterun.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/deleterun.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,75 @@
+#!/usr/bin/env python
+
+# Add RunManager modules to PYTHONPATH
+import sys
+sys.path.append('/home/scec-00/patrices/code/trunk/RunManager/')
+
+import os
+import cgi
+from RunManager import *
+from HTMLLib import *
+
+# Enable python stack trace output to HTML
+import cgitb; cgitb.enable() 
+
+
+# Globals
+rm = None
+
+
+def init():
+    global rm
+
+    rm = RunManager(readonly=False)
+    if (not rm.isValid()):
+        print "Unable to open database connection.<p>"
+        return 1
+    
+    rm.useHTML(True)
+    
+    return 0
+
+
+def main():
+    global rm
+
+    page = HTMLPage()
+    page.header()
+    page.pageTitle()
+    page.menu([[MAIN_PAGE, "Main"],])
+    page.sectionTitle("Delete Run")
+
+    # Get the user_id if available
+    last_user = os.environ.get("REMOTE_USER")
+    
+    form = cgi.FieldStorage() # instantiate only once!
+    if form.has_key("key") and form["key"].value != "":
+        run_id = int(form["key"].value)
+        if (rm.deleteRunByID(run_id, last_user) != 0):
+            print "Unable to delete run %s<p>" % (run_id)
+        else:
+            # Commit change
+            rm.commitTransaction()
+            print "Run successfully deleted from database.<p>"            
+    else:
+        print "No status ID supplied.<p>"
+
+    print "If page does not redirect in a few seconds, please click the link above.<p>"
+    print "Please wait...<p>"
+
+    page.addRedirect(MAIN_PAGE)
+    page.footer()
+    
+    return 0
+
+
+def cleanup():
+    return 0
+
+
+if __name__ == '__main__':
+    if (init() != 0):
+        sys.exit(1)
+    main()
+    cleanup()
+    sys.exit(0)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/deleterun.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/details.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/details.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/details.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,206 @@
+#!/usr/bin/env python
+
+# Add RunManager modules to PYTHONPATH
+import sys
+sys.path.append('/home/scec-00/patrices/code/trunk/RunManager/')
+
+import os
+import cgi
+from RunManager import *
+from HTMLLib import *
+
+
+# Globals
+rm = None
+
+
+# Enable python stack trace output to HTML
+import cgitb; cgitb.enable() 
+
+
+def init():
+    global rm
+
+    rm = RunManager(readonly=False)
+    if (not rm.isValid()):
+        print "Unable to open database connection.<p>"
+        return 1
+    
+    rm.useHTML(True)
+    
+    return 0
+
+
+def dispDetails(run):
+    
+    print "<div style=\"background: %s\">" % ("Beige")
+    print "<table width=\"1400\" border=\"0\">"
+
+    # Run
+    print "<tr>"
+    print "<td>Run:</td>"
+    print "<td>%d</td>" % (run.getRunID())
+    print "</tr>"
+
+    # Site
+    print "<tr>"
+    print "<td>Site:</td>"
+    print "<td>%s (%d)</td>" % (run.getSite().getShortName(), run.getSite().getSiteID())
+    print "</tr>"
+
+    # ERF_ID
+    print "<tr>"
+    print "<td>ERF ID:</td>"
+    print "<td>"
+    print "%d" % (run.getERFID())
+    print "</td>"
+    print "</tr>"
+        
+    # SGT_Var_ID
+    print "<tr>"
+    print "<td>SGT Variation ID:</td>"
+    print "<td>"
+    print "%d" % (run.getSGTVarID())
+    print "</td>"
+    print "</tr>"
+        
+    # Rup_Var_ID
+    print "<tr>"
+    print "<td>Rup Variation ID:</td>"
+    print "<td>"
+    print "%d" % (run.getRupVarID())
+    print "</td>"
+    print "</tr>"
+
+    # Status
+    print "<tr>"
+    print "<td>Status:</td>"
+    print "<td>"
+    print "%s (%s GMT)" % (run.getStatus(), run.getStatusTime())
+    print "</td>"
+    print "</tr>"
+
+    # SGT_Host
+    print "<tr>"
+    print "<td>SGT Host:</td>"
+    print "<td>"
+    print "%s (%s GMT)" % (run.getSGTHost(), run.getSGTTime())
+    print "</td>"
+    print "</tr>"
+
+    # PP_Host
+    print "<tr>"
+    print "<td>PP Host:</td>"
+    print "<td>"
+    print "%s (%s GMT)" % (run.getPPHost(), run.getPPTime())
+    print "</td>"
+    print "</tr>"
+
+    # Comment
+    print "<tr>"
+    print "<td>Comment:</td>"
+    print "<td>"
+    if (run.getComment() != ""):
+        print "<textarea cols=80 rows=3 name=\"comment\" readonly=\"yes\">%s</textarea>" % \
+              (str(run.getComment()))
+    else:
+        print "<textarea cols=80 rows=3 name=\"comment\" readonly=\"yes\">None</textarea>"
+    print "</td>"
+    print "</tr>"
+
+    # Last_User
+    print "<tr>"
+    print "<td>Last User:</td>"
+    print "<td>"
+    print "%s" % (str(run.getLastUser()))
+    print "</td>"
+    print "</tr>"
+
+    # Job_ID
+    print "<tr>"
+    print "<td>Job ID:</td>"
+    print "<td>"
+    if (run.getJobID() != ""):
+        print "%s" % (str(run.getJobID()))
+    else:
+        print "None"
+    print "</td>"
+    print "</tr>"                        
+
+    # Submit_Dir
+    print "<tr>"
+    print "<td>Submit Dir:</td>"
+    print "<td>"
+    if (run.getSubmitDir() != ""):
+        print "<textarea cols=80 rows=3 name=\"submit_dir\" readonly=\"yes\">%s</textarea>" % \
+              (str(run.getSubmitDir()))
+    else:
+        print "<textarea cols=80 rows=3 name=\"submit_dir\" readonly=\"yes\">None</textarea>"
+    print "</td>"
+    print "</tr>"
+
+    # Notify_User
+    print "<tr>"
+    print "<td>Notify User:</td>"
+    print "<td>"
+    if (run.getNotifyUser() != ""):
+        print "%s" % (str(run.getNotifyUser()))
+    else:
+        print "None"
+    print "</td>"
+    print "</tr>"
+    
+    print "</table>"
+    print "</div>"
+    print "<p>"
+    
+    return 0
+
+
+def main():
+    global rm
+
+    form = cgi.FieldStorage() # instantiate only once!
+    filter = None
+    if form.has_key("filter") and form["filter"].value != "":
+        filter = form["filter"].value
+
+    page = HTMLPage()
+    page.header()
+    page.pageTitle()
+    if (filter == None):
+        page.menu([["%s?filter=%s" % (MAIN_PAGE, "Active"), "Main"],])
+    else:
+        page.menu([["%s?filter=%s" % (MAIN_PAGE, filter), "Main"],])
+    page.sectionTitle("Details")
+
+    if form.has_key("key") and form["key"].value != "":
+        run_id = form["key"].value
+        run = rm.getRunByID(run_id)
+        if (run != None):
+ 
+            # Present form to allow user modification
+            dispDetails(run);
+
+            page.footer()
+            return 0
+        
+    else:
+        print "No run ID supplied.<p>"
+
+    page.addRedirect(MAIN_PAGE)
+    page.footer()
+    
+    return 0
+
+
+def cleanup():
+    return 0
+
+
+if __name__ == '__main__':
+    if (init() != 0):
+        sys.exit(1)
+    main()
+    cleanup()
+    sys.exit(0)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/details.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/dispstats.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/dispstats.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/dispstats.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,221 @@
+#!/usr/bin/env python
+
+# Add RunManager modules to PYTHONPATH
+import sys
+sys.path.append('/home/scec-00/patrices/code/trunk/RunManager/')
+
+import os
+import cgi
+from HTMLLib import *
+from RunManager import *
+from CompCurveFile import *
+
+# Enable python stack trace output to HTML
+import cgitb; cgitb.enable() 
+
+# Constants
+NO_IMG_TXT = "<table width=600><tr><td><center>[Image not found]</center></td></tr></table>"
+NO_FILE_TXT = "<center>Unknown</center>"
+
+
+# Globals
+rm = None
+
+class Data:
+    headers = []
+    vals = []
+    
+    def __init__(self, headers, vals):
+        self.headers = headers
+        self.vals = vals
+
+    def formatHeader(self):
+        return self.headers
+
+    def formatData(self):
+        return self.vals
+
+
+def init():
+    global rm
+
+    rm = RunManager(readonly=True)
+    if (not rm.isValid()):
+        print "Unable to open database connection.<p>"
+        return 1
+    
+    rm.useHTML(True)
+    
+    return 0
+
+
+def displayDetails(stats):
+    print "<div style=\"background: %s\">" % ("Beige")
+
+    print "<table width=\"800\" border=\"0\">"
+
+    site = stats.getSite()
+
+    # Run
+    print "<tr>"
+    print "<td>Run:</td>"
+    print "<td>%d</td>" % (stats.getRunID())
+    print "</tr>"
+    
+    # Site
+    print "<tr>"
+    print "<td>Site:</td>"
+    print "<td>%s (%d), %s</td>" % (site.getShortName(), site.getSiteID(), site.getLongName())
+    print "</tr>"
+
+    # Location
+    print "<tr>"
+    print "<td>Location:</td>"
+    print "<td>lat=%f, lon=%f</td>" % (site.getLatitude(), site.getLongitude())
+    print "</tr>"
+
+    # Site Type
+    print "<tr>"
+    print "<td>Type:</td>"
+    print "<td>%s</td>" % (site.getSiteType())
+    print "</tr>"
+    
+    # ERF_ID
+    print "<tr>"
+    print "<td>ERF ID:</td>"
+    print "<td>%d</td>" % (stats.getERFID())
+    print "</tr>"
+
+    # SGT_Var_ID
+    print "<tr>"
+    print "<td>SGT Var ID:</td>"
+    print "<td>%d</td>" % (stats.getSGTVarID())
+    print "</tr>"
+    
+    # Rup_Var_ID
+    print "<tr>"
+    print "<td>Rup Var ID:</td>"
+    print "<td>%d</td>" % (stats.getRupVarID())
+    print "</tr>"
+
+    # Num_PSA
+    print "<tr>"
+    print "<td>Number PSAs:</td>"
+    print "<td>%d</td>" % (stats.getNumPSAs())
+    print "</tr>"
+
+    # Num_Curves
+    print "<tr>"
+    print "<td>Number Curves:</td>"
+    print "<td>%d</td>" % (stats.getNumCurves())
+    print "</tr>"
+
+    print "</table>"
+    print "</div>"
+
+    return 0
+
+
+def displayCurves(stats):
+
+    site = stats.getSite().getShortName()
+    
+    # Construct paths
+    src_dir = "%s%s/" % (CURVE_DIR, site)
+    
+    # Get list of curves from src dir
+    try:
+        files = os.listdir(src_dir)
+    except:
+        files = []
+
+    # Isolate the .png files
+    curves = []
+    if (len(files) > 0):
+        # Display all .png files
+        i = 0
+        for f in files:
+            if (f.find('.png') != -1):
+                i = i + 1
+                srcname = "%s%s" % (src_dir, f)
+                curvepic = CompCurveFile(srcname)
+                curves.append(curvepic)
+
+    # Construct data for table
+    header_list = []
+    img_list = []
+    file_list = []
+    for c in stats.getCurveList():
+        per_str = "SA_%dsec" % (int(round(c.getIMValue())))
+        header_list.append(per_str)
+        found = False
+        match = None
+        for curvepic in curves:
+            if ((per_str == curvepic.getPeriod()) and (curvepic.getRunID() == stats.getRunID())):
+                if ((match == None) or (match.getDate() < curvepic.getDate())):
+                    match = curvepic
+
+        if (match != None):
+            html_str = "<img src=\"loadpng.py?img=%s\">" % (match.getEscaped())
+            file_str = "<center>%s</center>" % (match.getFilename())
+            img_list.append(html_str)
+            file_list.append(file_str)
+        else:
+            img_list.append(NO_IMG_TXT)
+            file_list.append(NO_FILE_TXT)
+
+    data_list = []
+    data_list.append(Data(header_list, img_list))
+    data_list.append(Data(header_list, file_list))
+
+    # Display the table
+    t = HTMLTable()
+    t.setWidth(None)
+    t.addCaption("Comparison Curves")
+    t.allowWrap(False)
+    t.display(data_list)
+
+    print "<p>"
+
+    return 0
+
+
+def main():
+    global rm
+    
+    page = HTMLPage()
+    page.header()
+    page.pageTitle()
+    page.menu([["%s?filter=Completed" % MAIN_PAGE, "Main"],])
+    page.sectionTitle("Run Stats/Curves")
+
+    form = cgi.FieldStorage() # instantiate only once!
+    run_id = None
+    if form.has_key("key") and form["key"].value != "":
+        run_id = form["key"].value
+
+    if (run_id != None):
+        # Pull run record and get site name
+        stats = rm.getRunStatsByID(run_id)
+        if (stats == None):
+            print "Run %s not found in DB.<p>" % (run_id)
+        else:
+            displayDetails(stats)
+            print "<p>"
+            displayCurves(stats)
+
+    page.footer()
+    
+    return 0
+
+
+def cleanup():
+    return 0
+
+
+if __name__ == '__main__':
+    if (init() != 0):
+        sys.exit(1)
+    main()
+    cleanup()
+    sys.exit(0)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/dispstats.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/doadd.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/doadd.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/doadd.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,276 @@
+#!/usr/bin/env python
+
+# Add RunManager modules to PYTHONPATH
+import sys
+sys.path.append('/home/scec-00/patrices/code/trunk/RunManager/')
+
+import os
+import cgi
+from RunManager import *
+from HTMLLib import *
+
+
+# Globals
+rm = None
+erf_list = []
+sgt_var_list = []
+rup_var_list = []
+
+# Enable python stack trace output to HTML
+import cgitb; cgitb.enable() 
+
+
+def init():
+    global rm
+
+    rm = RunManager(readonly=False)
+    if (not rm.isValid()):
+        print "Unable to open database connection.<p>"
+        return 1
+    
+    rm.useHTML(True)
+
+    return 0
+
+
+def dispAddForm(site_map, run):
+    
+    print "<form action=\"addrun.py\" method=\"POST\" enctype=\"multipart/form-data\" name=\"addform\">"
+    for id,name in site_map.items():
+        print "<input type=\"hidden\" name=\"site_id\" value=\"%s\">" % (id)
+        print "<input type=\"hidden\" name=\"site\" value=\"%s\">" % (name)
+
+    print "<div style=\"background: %s\">" % ("Beige")
+
+    print "<table width=\"1400\" border=\"0\">"
+
+    # Site
+    print "<tr>"
+    print "<td>Site(s):</td>"
+    print "<td>"
+    disp_str = ""
+    for id,name in site_map.items():
+        if (disp_str == ""):
+            disp_str = "%s (%s)" % (name, id)
+        else:
+            disp_str = disp_str + ", %s (%s)" % (name, id)
+    print disp_str
+    print "</td>"
+    print "</tr>"
+
+    # ERF_ID
+    print "<tr>"
+    print "<td>ERF ID:</td>"
+    print "<td>"
+    print "<select name=\"erf_id\">"
+    for erf in erf_list:
+        print "<option value=\"%d\">%d</option>" % (erf[0], erf[0])
+    print "</select>"
+    print "</td>"
+    print "</tr>"
+
+    # SGT_Var_ID
+    print "<tr>"
+    print "<td>SGT Variation ID:</td>"
+    print "<td>"
+    print "<select name=\"sgt_var_id\">"
+    for sgt_var in sgt_var_list:
+        print "<option value=\"%d\">%d</option>" % (sgt_var[0], sgt_var[0])
+    print "</select>"
+    print "</td>"
+    print "</tr>"
+
+    # Rup_Var_ID
+    print "<tr>"
+    print "<td>Rup Variation ID:</td>"
+    print "<td>"
+    print "<select name=\"rup_var_id\">"
+    for rup_var in rup_var_list:
+        print "<option value=\"%d\">%d</option>" % (rup_var[0], rup_var[0])
+    print "</select>"
+    print "</td>"
+    print "</tr>"
+
+    # Status
+    print "<tr>"
+    print "<td>Status:</td>"
+    print "<td>"
+    print "<input type=\"radio\" name=\"status\" value=\"%s\" checked> %s<br>" % (run.getStatus(), run.getStatus())
+    print "</td>"
+    print "</tr>"
+
+    # Status Time
+    print "<tr>"
+    print "<td>Status Time:</td>"
+    print "<td><input type=\"hidden\" name=\"status_time\" value=\"%s\">%s GMT</td>" % \
+          (run.getStatusTime(), run.getStatusTime())
+    print "</tr>"
+    
+    # SGT_Host
+    print "<tr>"
+    print "<td>SGT Host:</td>"
+    print "<td>"
+    print "<select name=\"sgt_host\">"
+    for host in HOST_LIST:
+        print "<option value=\"%s\">%s</option>" % (host, host)
+    print "</select>"
+    print "</td>"
+    print "</tr>"
+
+    # PP_Host
+    print "<tr>"
+    print "<td>PP Host:</td>"
+    print "<td>"
+    print "<select name=\"pp_host\">"
+    for host in HOST_LIST:
+        print "<option value=\"%s\">%s</option>" % (host, host)
+    print "</select>"
+    print "</td>"
+    print "</tr>"
+
+    # Comment
+    print "<tr>"
+    print "<td>Comment:</td>"
+    print "<td>"
+    print "<textarea cols=80 rows=3 name=\"comment\">%s</textarea>" % (run.getComment())
+    print "</td>"
+    print "</tr>"
+
+    # Last_User
+    print "<tr>"
+    print "<td>Last User:</td>"
+    print "<td>"
+    last_user = os.environ.get("REMOTE_USER")
+    if (last_user == None):        
+        print "<select name=\"last_user\">"
+        for user in USER_LIST:
+            print "<option value=\"%s\">%s</option>" % (user, user)
+            print "</select>"
+    else:
+        print "<input type=\"hidden\" name=\"last_user\" value=\"%s\">" % (last_user)
+        print "%s" % (last_user)
+    print "</td>"
+    print "</tr>"
+
+    # Job_ID
+    print "<tr>"
+    print "<td>Job ID:</td>"
+    print "<td>"
+    print "<input type=\"text\" name=\"job_id\" size=\"12\" value=\"\">"
+    print "</td>"
+    print "</tr>"
+
+    # Submit_Dir
+    print "<tr>"
+    print "<td>Submit Dir:</td>"
+    print "<td>"
+    print "<textarea cols=80 rows=3 name=\"submit_dir\">%s</textarea>" % (run.getSubmitDir())
+    print "</td>"
+    print "</tr>"
+
+    # Notify_User
+    print "<tr>"
+    print "<td>Notify User:</td>"
+    print "<td>"
+    print "<input type=\"text\" name=\"notify_user\" size=\"32\" value=\"\">"
+    print "</td>"
+    print "</tr>"
+
+    print "</table>"
+
+    print "</div>"
+
+    # Place buttons
+    print "<br>"
+    print "<br>"
+    print "<input type=\"submit\" value=\"Save\">"
+    print "<input type=\"reset\" value=\"Clear\">"
+    print "<br>"
+    print "</form>"
+    
+    return 0
+
+
+def main():
+    global rm
+    global erf_list
+    global sgt_var_list
+    global rup_var_list
+    
+    page = HTMLPage()
+    page.header()
+    page.pageTitle()
+    page.menu([["%s?filter=New Sites" % (MAIN_PAGE), "Main"], ])
+    page.sectionTitle("Add Run(s)")
+
+    form = cgi.FieldStorage() # instantiate only once!
+
+    site_id_list = []
+    if form.has_key("key"):
+        if  (type(form["key"]) != type([])):
+            if (form["key"].value != ""):
+                site_id_list = [form["key"].value,]
+        else:
+            site_id_list = form.getlist("key")
+            #site_id = form.getfirst("key")
+
+    if (len(site_id_list) > 0):
+
+        # Retrieve this site
+        site_map = {}
+        for site_id in site_id_list:
+            site = rm.getSiteNameByID(int(site_id));
+            site_map[site_id] = site
+            
+        # Retrieve ERF_IDs
+        erf_list = rm.getParamIDs("ERF");
+        
+        # Retrieve SGT_Variation_IDs
+        sgt_var_list = rm.getParamIDs("SGT_VAR");
+        
+        # Retrieve Rup_Variation_IDs
+        rup_var_list = rm.getParamIDs("RUP_VAR");
+
+        if ((site == None) or (len(erf_list) == 0) or (len(sgt_var_list) == 0) or (len(rup_var_list) == 0)):
+            print "Unable to retrieve reference info from DB.<p>"
+        else:
+            # Populate default run object
+            run = Run()
+            site = Site()
+            site.setSiteID(int(site_id_list[0]))
+            site.setShortName(site_map[site_id_list[0]])
+            run.setSite(site)
+            run.setERFID(erf_list[0][0])
+            run.setSGTVarID(sgt_var_list[0][0])
+            run.setRupVarID(rup_var_list[0][0])
+            run.setStatus(START_STATE)
+            run.setStatusTimeCurrent()
+            
+            # Present form to allow user modification
+            dispAddForm(site_map, run);
+            
+            page.footer()
+            return 0
+
+    else:
+        print "No run ID supplied.<p>"
+
+    print "If page does not redirect in a few seconds, please click the link above.<p>"
+    print "Please wait...<p>"    
+
+    page.addRedirect("%s?filter=New Stes" % (MAIN_PAGE))
+    page.footer()
+
+    return 0
+
+
+def cleanup():
+    return 0
+
+
+if __name__ == '__main__':
+    if (init() != 0):
+        sys.exit(1)
+    main()
+    cleanup()
+    sys.exit(0)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/doadd.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/dodelete.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/dodelete.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/dodelete.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,76 @@
+#!/usr/bin/env python
+
+# Add RunManager modules to PYTHONPATH
+import sys
+sys.path.append('/home/scec-00/patrices/code/trunk/RunManager/')
+
+import cgi
+from HTMLLib import *
+
+# Enable python stack trace output to HTML
+import cgitb; cgitb.enable() 
+
+
+# Globals
+
+
+def init():
+    return 0
+
+
+def main():
+
+    page = HTMLPage()
+    page.header()
+    page.pageTitle()
+    page.menu([[MAIN_PAGE, "Main"],])
+    page.sectionTitle("Delete Run")
+
+    form = cgi.FieldStorage() # instantiate only once!
+
+    if form.has_key("key") and form["key"].value != "":
+        run_id = int(form["key"].value)
+
+        print "Please confirm, delete run %d?" % (run_id)
+        print "<p>"
+
+        print "<table>"
+        print "<tr>"
+        print "<td>"
+        print "<form action=\"%s\" method=\"POST\" enctype=\"multipart/form-data\" name=\"confirmform\">" % ("deleterun.py")
+        print "<input type=\"hidden\" name=\"key\" value=\"%s\">" % (str(run_id))
+        print "<input type=\"submit\" value=\"Yes\">"
+        print "</form>"
+        print "</td>"
+
+        print "<td>"
+        print "<form action=\"%s\" method=\"POST\" enctype=\"multipart/form-data\" name=\"abortform\">" % ("runmanager.py")
+        #print "<input type=\"hidden\" name=\"key\" value=\"%s\">" % (str(run_id))
+        print "<input type=\"submit\" value=\"No\">"
+        print "</form>"
+        print "</td>"
+        
+        print "</tr>"
+        print "</table>"
+
+    else:
+        print "No status ID supplied.<p>"
+        print "If page does not redirect in a few seconds, please click the link above.<p>"
+        print "Please wait...<p>"
+        page.addRedirect(MAIN_PAGE)
+
+    page.footer(True)
+    
+    return 0
+
+
+def cleanup():
+    return 0
+
+
+if __name__ == '__main__':
+    if (init() != 0):
+        sys.exit(1)
+    main()
+    cleanup()
+    sys.exit(0)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/dodelete.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/doedit.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/doedit.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/doedit.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,268 @@
+#!/usr/bin/env python
+
+# Add RunManager modules to PYTHONPATH
+import sys
+sys.path.append('/home/scec-00/patrices/code/trunk/RunManager/')
+
+import os
+import cgi
+from RunManager import *
+from HTMLLib import *
+
+
+# Globals
+rm = None
+erf_list = []
+sgt_var_list = []
+rup_var_list = []
+
+
+# Enable python stack trace output to HTML
+import cgitb; cgitb.enable() 
+
+
+def init():
+    global rm
+
+    rm = RunManager(readonly=False)
+    if (not rm.isValid()):
+        print "Unable to open database connection.<p>"
+        return 1
+    
+    rm.useHTML(True)
+    
+    return 0
+
+
+def dispModifyForm(run):
+    
+    print "<form action=\"modifyrun.py\" method=\"POST\" enctype=\"multipart/form-data\" name=\"modifyform\">"
+    print "<input type=\"hidden\" name=\"run_id\" value=\"%d\">" % (run.getRunID())
+    print "<input type=\"hidden\" name=\"site_id\" value=\"%d\">" % (run.getSite().getSiteID())
+    print "<input type=\"hidden\" name=\"site\" value=\"%s\">" % (run.getSite().getShortName())
+
+    print "<div style=\"background: %s\">" % ("Beige")    
+
+    print "<table width=\"1400\" border=\"0\">"
+
+    # Site
+    print "<tr>"
+    print "<td>Site:</td>"
+    print "<td>%s (%d)</td>" % (run.getSite().getShortName(), run.getSite().getSiteID())
+    print "</tr>"
+
+    # ERF_ID
+    print "<tr>"
+    print "<td>ERF ID:</td>"
+    print "<td>"
+    print "<select name=\"erf_id\">"
+    print "<option value=\"%d\">%d</option>" % (run.getERFID(), run.getERFID())
+    for erf in erf_list:
+        if (int(erf[0]) != run.getERFID()):
+            print "<option value=\"%s\">%s</option>" % (erf[0], erf[0])
+    print "</select>"
+    print "</td>"
+    print "</tr>"
+        
+    # SGT_Var_ID
+    print "<tr>"
+    print "<td>SGT Variation ID:</td>"
+    print "<td>"
+    print "<select name=\"sgt_var_id\">"
+    print "<option value=\"%d\">%d</option>" % (run.getSGTVarID(), run.getSGTVarID())
+    for sgt_var in sgt_var_list:
+        if (int(sgt_var[0]) != run.getSGTVarID()):
+            print "<option value=\"%s\">%s</option>" % (sgt_var[0], sgt_var[0])
+    print "</select>"
+    print "</td>"
+    print "</tr>"
+        
+    # Rup_Var_ID
+    print "<tr>"
+    print "<td>Rup Variation ID:</td>"
+    print "<td>"
+    print "<select name=\"rup_var_id\">"
+    print "<option value=\"%d\">%d</option>" % (run.getRupVarID(), run.getRupVarID())
+    for rup_var in rup_var_list:
+        if (int(rup_var[0]) != run.getRupVarID()):
+            print "<option value=\"%s\">%s</option>" % (rup_var[0], rup_var[0])
+    print "</select>"
+    print "</td>"
+    print "</tr>"
+
+    # Status
+    print "<tr>"
+    print "<td>Status:</td>"
+    print "<td>"
+    for status in STATUS_STD[run.getStatus()]:
+        if (run.getStatus() == status):
+            print "<input type=\"radio\" name=\"status\" value=\"%s\" checked> %s<br>" % (status, status)
+        else:
+            print "<input type=\"radio\" name=\"status\" value=\"%s\"> %s<br>" % (status, status)
+    print "</td>"
+    print "</tr>"
+
+    # Status Time
+    print "<tr>"
+    print "<td>Status Time:</td>"
+    print "<td><input type=\"hidden\" name=\"status_time\" value=\"%s\">%s GMT</td>" % \
+          (run.getStatusTime(), run.getStatusTime())
+    print "</tr>"
+    
+    # SGT_Host
+    print "<tr>"
+    print "<td>SGT Host:</td>"
+    print "<td>"
+    print "<select name=\"sgt_host\">"
+    print "<option value=\"%s\">%s</option>" % (run.getSGTHost(), run.getSGTHost())
+    for host in HOST_LIST:
+        if (run.getSGTHost() != host):
+            print "<option value=\"%s\">%s</option>" % (host, host)
+    print "</select>"
+    print "</td>"
+    print "</tr>"
+
+    # PP_Host
+    print "<tr>"
+    print "<td>PP Host:</td>"
+    print "<td>"
+    print "<select name=\"pp_host\">"
+    print "<option value=\"%s\">%s</option>" % (run.getPPHost(), run.getPPHost())
+    for host in HOST_LIST:
+        if (run.getPPHost() != host):
+            print "<option value=\"%s\">%s</option>" % (host, host)
+    print "</select>"
+    print "</td>"
+    print "</tr>"
+
+    # Comment
+    print "<tr>"
+    print "<td>Comment:</td>"
+    print "<td>"
+    if (run.getComment() == None):
+        print "<textarea cols=80 rows=3 name=\"comment\"></textarea>"
+    else:
+        print "<textarea cols=80 rows=3 name=\"comment\">%s</textarea>" % (run.getComment())
+    print "</td>"
+    print "</tr>"
+
+    # Last_User
+    print "<tr>"
+    print "<td>Last User:</td>"
+    print "<td>"
+    last_user = os.environ.get("REMOTE_USER")
+    if (last_user == None):
+        print "<select name=\"last_user\">"
+        print "<option value=\"%s\">%s</option>" % (run.getLastUser(), run.getLastUser())
+        for user in USER_LIST:
+            if (run.getLastUser() != user):
+                print "<option value=\"%s\">%s</option>" % (user, user)
+                print "</select>"
+    else:
+        print "<input type=\"hidden\" name=\"last_user\" value=\"%s\">" % (last_user)        
+        print "%s" % (last_user)
+    print "</td>"
+    print "</tr>"
+
+    # Job_ID
+    print "<tr>"
+    print "<td>Job ID:</td>"
+    print "<td>"
+    if (run.getJobID() == None):
+        print "<input type=\"text\" name=\"job_id\" size=\"16\" value=\"\">"
+    else:
+        print "<input type=\"text\" name=\"job_id\" size=\"16\" value=\"%s\">" % (run.getJobID())
+    print "</td>"
+    print "</tr>"                        
+
+    # Submit_Dir
+    print "<tr>"
+    print "<td>Submit Dir:</td>"
+    print "<td>"
+    if (run.getSubmitDir() == None):
+        print "<textarea cols=80 rows=3 name=\"submit_dir\"></textarea>"
+    else:
+        print "<textarea cols=80 rows=3 name=\"submit_dir\">%s</textarea>" % \
+              (run.getSubmitDir())
+    print "</td>"
+    print "</tr>"
+
+    # Notify_User
+    print "<tr>"
+    print "<td>Notify User:</td>"
+    print "<td>"
+    if (run.getNotifyUser() == None):
+        print "<input type=\"text\" name=\"notify_user\" size=\"32\" value=\"\">"
+    else:
+        print "<input type=\"text\" name=\"notify_user\" size=\"32\" value=\"%s\">" % (run.getNotifyUser())
+    print "</td>"
+    print "</tr>"
+    
+    print "</table>"
+
+    print "</div>"
+    
+    # Place buttons
+    print "<br>"
+    print "<br>"
+    print "<input type=\"submit\" value=\"Save\">"
+    print "<input type=\"reset\" value=\"Clear\">"
+    print "<br>"
+    print "</form>"
+
+    return 0
+
+
+def main():
+    global rm
+    global erf_list
+    global sgt_var_list
+    global rup_var_list
+
+    form = cgi.FieldStorage() # instantiate only once!
+
+    page = HTMLPage()
+    page.header()
+    page.pageTitle()
+    page.menu([[MAIN_PAGE, "Main"],])
+    page.sectionTitle("Edit Run")
+
+    if form.has_key("key") and form["key"].value != "":
+        run_id = form["key"].value
+        run = rm.getRunByID(run_id)
+        if (run != None):
+ 
+            # Retrieve ERF_IDs
+            erf_list = rm.getParamIDs("ERF");
+            
+            # Retrieve SGT_Variation_IDs
+            sgt_var_list = rm.getParamIDs("SGT_VAR");
+            
+            # Retrieve Rup_Variation_IDs
+            rup_var_list = rm.getParamIDs("RUP_VAR");
+            
+            # Present form to allow user modification
+            dispModifyForm(run);
+
+            page.footer()
+            return 0
+        
+    else:
+        print "No status ID supplied.<p>"
+
+    page.addRedirect(MAIN_PAGE)
+    page.footer()
+    
+    return 0
+
+
+def cleanup():
+    return 0
+
+
+if __name__ == '__main__':
+    if (init() != 0):
+        sys.exit(1)
+    main()
+    cleanup()
+    sys.exit(0)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/doedit.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/loadpng.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/loadpng.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/loadpng.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,41 @@
+#!/usr/bin/env python
+
+import sys
+import cgi
+
+
+# Enable python stack trace output to HTML
+import cgitb; cgitb.enable() 
+
+
+def init():
+    
+    return 0
+
+
+def main():
+
+    form = cgi.FieldStorage() # instantiate only once!
+
+    img = None
+    if form.has_key("img") and form["img"].value != "":
+        img = form["img"].value
+
+    if ((img != None) and (img.find(".png") != -1)):
+        # Dump the .png file to stdout
+        print "Content-type: image/png\n"
+        print file(r"%s" % (img), "r").read()
+    
+    return 0
+
+
+def cleanup():
+    return 0
+
+
+if __name__ == '__main__':
+    if (init() != 0):
+        sys.exit(1)
+    main()
+    cleanup()
+    sys.exit(0)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/loadpng.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/modifyrun.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/modifyrun.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/modifyrun.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,120 @@
+#!/usr/bin/env python
+
+# Add RunManager modules to PYTHONPATH
+import sys
+sys.path.append('/home/scec-00/patrices/code/trunk/RunManager/')
+
+import cgi
+from RunManager import *
+from HTMLLib import *
+
+# Enable python stack trace output to HTML
+import cgitb; cgitb.enable() 
+
+
+# Globals
+rm = None
+
+
+def init():
+    global rm
+
+    rm = RunManager(readonly=False)
+    if (not rm.isValid()):
+        print "Unable to open database connection.<p>"
+        return 1
+    
+    rm.useHTML(True)
+    
+    return 0
+
+
+def main():
+    global rm
+
+    page = HTMLPage()
+    page.header()
+    page.pageTitle()
+    page.menu([[MAIN_PAGE, "Main"],])
+    page.sectionTitle("Edit Run")
+
+    form = cgi.FieldStorage() # instantiate only once!
+    run = Run()
+    site = Site()
+    if form.has_key("run_id") and form["run_id"].value != "":
+        run.setRunID(int(form["run_id"].value))
+    if form.has_key("site_id") and form["site_id"].value != "":
+        site.setSiteID(int(form["site_id"].value))
+    if form.has_key("site") and form["site"].value != "":
+        site.setShortName(form["site"].value)
+    if form.has_key("erf_id") and form["erf_id"].value != "":
+        run.setERFID(int(form["erf_id"].value))
+    if form.has_key("sgt_var_id") and form["sgt_var_id"].value != "":
+        run.setSGTVarID(int(form["sgt_var_id"].value))
+    if form.has_key("rup_var_id") and form["rup_var_id"].value != "":
+        run.setRupVarID(int(form["rup_var_id"].value))
+    if form.has_key("status") and form["status"].value != "":
+        run.setStatus(form["status"].value)
+    if form.has_key("status_time") and form["status_time"].value != "":
+        run.setStatusTime(form["status_time"].value)
+    if form.has_key("sgt_host") and form["sgt_host"].value != "":
+        run.setSGTHost(form["sgt_host"].value)
+    if form.has_key("pp_host") and form["pp_host"].value != "":
+        run.setPPHost(form["pp_host"].value)
+    if form.has_key("comment"):
+        run.setComment(form["comment"].value)
+    if form.has_key("last_user") and form["last_user"].value != "":
+        run.setLastUser(form["last_user"].value)
+    if form.has_key("job_id"):
+        run.setJobID(form["job_id"].value)
+    if form.has_key("submit_dir"):
+        run.setSubmitDir(form["submit_dir"].value)
+    if form.has_key("notify_user"):
+        run.setNotifyUser(form["notify_user"].value)
+
+    run.setSite(site)
+    
+    # Update status time
+    run.setStatusTimeCurrent()
+    if (run.getStatus() in SGT_STATES):
+        run.setSGTTimeCurrent()
+    if (run.getStatus() in PP_STATES):
+        run.setPPTimeCurrent()
+
+    # NOTE: Should perform these steps to ensure DB consistency
+    # 1) Parse orig_status_time from cgi params (this is status_time from original user query on this run)
+    # 2) Start transaction with begin()
+    # 3) Query DB for this run
+    # 4) Compare queried status_time with user status_time
+    # 5) If the same, perform update. commit.
+    # 6) Else, display error. rollback().
+
+    # Perform update
+    if (rm.updateRun(run) != 0):
+        print "Run update failed for site %s.<p>" % (run.getSite().getShortName())
+    else:
+        # Commit changes
+        rm.commitTransaction()
+        print "Run successfully updated for site %s.<p>" % (run.getSite().getShortName())
+
+    print "If page does not redirect in a few seconds, please click the link above.<p>"
+    print "Please wait...<p>"
+    page.addRedirect(MAIN_PAGE)
+    page.footer()
+
+    return 0
+
+
+def cleanup():
+    return 0
+
+
+if __name__ == '__main__':
+    if (init() != 0):
+        sys.exit(1)
+    if (main() != 0):
+        pass
+    else:
+        pass
+    cleanup()
+    sys.exit(0)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/modifyrun.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/runmanager.py
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/runmanager.py	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/runmanager.py	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,251 @@
+#!/usr/bin/env python
+
+# Add RunManager modules to PYTHONPATH
+import sys
+sys.path.append('/home/scec-00/patrices/code/trunk/RunManager/')
+
+import cgi
+from HTMLLib import *
+from RunManager import *
+
+# Enable python stack trace output to HTML
+import cgitb; cgitb.enable() 
+
+# Constants
+FILTERS = ["Active", "Completed", "Deleted", "New Sites", "Maps and Plots",]
+
+
+# Globals
+rm = None
+write_access = False
+remote_user = None
+
+def init():
+    global rm
+    global remote_user
+    global write_access
+
+    rm = RunManager(readonly=True)
+    if (not rm.isValid()):
+        print "Unable to open database connection.<p>"
+        return 1
+    
+    rm.useHTML(True)
+
+    # Get remote user id
+    remote_user = os.environ.get("REMOTE_USER")
+    if (remote_user in USER_LIST):
+        write_access = True
+    else:
+        write_access = False
+    return 0
+
+
+def dispNewSites():
+    global rm
+
+    site_list = rm.getNewSites()
+    if ((site_list == None) or (len(site_list) == 0)):
+        print "Unable to display new sites<p>"
+        return 1
+
+    t = HTMLTable()
+    t.addCaption("New Sites")
+    if (write_access == True):
+        action_list = []
+        action_list.append(HTMLAction("Add", "doadd.py", None))
+        t.addActionList(action_list)
+        t.setSelection(True)
+
+        # Wrap a form around this table that allows multiple sites to be selected
+        print "<form action=\"doadd.py\" method=\"POST\" enctype=\"multipart/form-data\" name=\"multiaddform\">"
+        print "<p>"
+        print "Click the appropriate link to add a run for that site, or select a group then click "
+        print "<input type=\"submit\" value=\"Group Add\">"
+        print "<p>"
+        t.display(site_list)
+        print "</form>"
+
+    else:
+        t.display(site_list)
+
+    print "<p>"
+    
+    return 0
+
+
+def dispMaps():
+    global rm
+
+    img_files = [SCATTER_IMG, INTERPOLATED_ALL_IMG, INTERPOLATED_GRID_IMG,]
+    img_names = ["Scatter Map", "Interpolated, All Sites", \
+                 "Interpolated, Gridded",]
+
+    img_links = []
+    for img in img_files:
+        link_str = "loadpng.py?img=%s" % (cgi.escape(img, True))
+        # Original img size: width=1275 height=1188
+        src_str = "<img src=\"loadpng.py?img=%s\" border=\"1\" width=\"638\" height=\"594\">" % (cgi.escape(img, True))
+        img_links.append("<a href=\"%s\">%s</a>" % (link_str, src_str))
+        
+    img_times = []
+    for img in img_files:
+        img_times.append(time.strftime("%Y-%m-%d %H:%M:%S GMT", \
+                                       time.gmtime(os.path.getmtime(img))))
+
+    print "<h4>Static Maps</h4>"
+    print "Combined CyberShake/Base Maps for various SA and percentile thresholds can be viewed at the <a href=\"http://scecdata.usc.edu/wiki/index.php?title=CyberShake_2009_Map_Table#Interpolated_Map_Combined_with_Base_Maps_.28each_map_requires_manual_update.29\">Wiki Static Maps</a> (login required)."
+
+    print "<h4>Dynamic Maps (Continuously Updated)</h4>"
+    print "<p>"
+    print "Click the image for a larger view."
+    print "<p>"
+    print "<table>"
+
+    print "<tr>"
+    for i in range(0, len(img_files)):
+        print "<th>%s</th>" % (img_names[i])
+    print "</tr>"
+    
+    print "<tr>"
+    for i in range(0, len(img_files)):
+        print "<td>%s</td>" % (img_links[i])
+    print "</tr>"
+
+    print "<tr>"
+    for i in range(0, len(img_files)):
+        print "<td><center>%s</center></td>" % (img_times[i])
+    print "</tr>"
+
+    print "</table>"
+    print "<p>"
+    return 0
+
+
+def main():
+    global rm
+    global write_access
+
+    page = HTMLPage()
+    page.header()
+    page.pageTitle()
+    page.menu([[MAIN_PAGE, "Main"],[WIKI_PAGE, "Wiki"],["../notes.html","Notes"]])
+    page.sectionTitle("Viewer")
+            
+    form = cgi.FieldStorage() # instantiate only once!
+    if form.has_key("filter") and form["filter"].value != "":
+        filter = form["filter"].value
+    else:
+        filter = FILTERS[0]
+
+    # Display selection form
+    print "<form action=\"%s\" method=\"POST\" enctype=\"multipart/form-data\" name=\"selectform\">" % \
+          (MAIN_PAGE)
+
+    print "<div style=\"background: %s\">" % ("Beige")
+    print "<table width=\"800\" border=\"0\">"
+    print "<tr>"
+    print "<td>View:</td>"
+    print "<td>"
+    print "<select name=\"filter\">"
+    print "<option value=\"%s\">%s</option>" % (filter, filter)
+    for f in FILTERS:
+        if (f != filter):
+            print "<option value=\"%s\">%s</option>" % (f, f)
+    print "</select>"
+    print "<input type=\"submit\" value=\"Refresh\">"
+    print "</td>"
+    print "</tr>"
+
+    print "<tr>"
+    print "<td>Database:</td>"
+    print "<td>%s : %d</td>" % (DB_HOST, DB_PORT)
+    print "</tr>"
+
+    print "<tr>"
+    print "<td>Access Permissions:</td>"
+    if (write_access == True):
+        print "<td>View/Add/Modify/Delete (%s)</td>" % (remote_user)
+    else:
+        print "<td>View Only (%s)</td>" % (remote_user)
+    print "</tr>"
+    
+    print "</table>"
+    print "</div>"
+    
+    print "</form><p>"
+
+    master_run_list = []
+
+    if (filter == FILTERS[0]):
+        target_states = ACTIVE_STATES
+        caption = "Active Runs"
+    elif (filter == FILTERS[1]):
+        target_states = [DONE_STATE,]
+        caption = "Completed Runs"
+    elif (filter == FILTERS[2]):
+        target_states = [DELETED_STATE,]
+        caption = "Deleted Runs"
+    elif (filter == FILTERS[3]):
+        dispNewSites()
+        page.footer(True)
+        return 0
+    else:
+        dispMaps()
+        page.footer(True)
+        return 0
+    
+    # Show the selected runs
+    run_list = rm.getRunsByState(target_states)
+    if ((run_list != None) and (len(run_list) > 0)):
+        master_run_list = run_list
+
+    if (len(master_run_list) == 0):
+        print "<p>No runs found in this state.</p>"
+        page.footer(True)
+        return 0
+
+    t = HTMLTable()
+    t.addCaption(caption)
+    action_list = []
+    if (filter == FILTERS[0]):
+        action_list.append(HTMLAction("Details", "details.py", "filter=%s" % (FILTERS[0])))
+        if (write_access == True):
+            action_list.append(HTMLAction("Edit", "doedit.py", None))
+            action_list.append(HTMLAction("Delete", "dodelete.py", None))
+        t.addActionList(action_list)
+        t.display(master_run_list)
+    elif (filter == FILTERS[1]):
+        action_list.append(HTMLAction("Details", "details.py", "filter=%s" % (FILTERS[1])))
+        action_list.append(HTMLAction("Stats", "dispstats.py", None))
+        t.addActionList(action_list)
+        t.setSelection(True)
+        # Wrap a form around this table that allows multiple sites to be selected
+        print "<form action=\"compcurves.py\" method=\"POST\" enctype=\"multipart/form-data\" name=\"multicompform\">"
+        print "<p>"
+        print "Click the appropriate link to view the site's curves, or select a group then click "
+        print "<input type=\"submit\" value=\"Group Compare\"> to perform a comparison."
+        print "<p>"
+        t.display(master_run_list)
+        print "</form>"
+    elif (filter == FILTERS[2]):
+        action_list.append(HTMLAction("Details", "details.py", "filter=%s" % (FILTERS[2])))
+        t.addActionList(action_list)
+        t.display(master_run_list)
+
+    print "<p>"
+    
+    page.footer(True)
+    return 0
+
+
+def cleanup():
+    return 0
+
+
+if __name__ == '__main__':
+    if (init() != 0):
+        sys.exit(1)
+    main()
+    cleanup()
+    sys.exit(0)


Property changes on: SwiftApps/Cybershake/app/post/RunManager/website/cgi-bin/runmanager.py
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/RunManager/website/index.html
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/website/index.html	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/website/index.html	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,18 @@
+<html>
+<head>
+<title>CyberShake Run Manager</title>
+</head>
+<body>
+<p>
+<h2>CyberShake Run Manager</h2>
+<hr>
+<p>
+If you are not forwarded to the Run Manager, please click <a href="cgi-bin/runmanager.py">here</a>.
+
+<meta http-equiv="refresh" content="0; URL=cgi-bin/runmanager.py">
+<hr>
+<p>
+© 2009 <a href="http://www.scec.org">Southern California Earthquake Center<a>, USC<br>
+Maintained by <a href="mailto:patrices at usc.edu">Patrick Small</a><p>
+</body>
+</html>

Added: SwiftApps/Cybershake/app/post/RunManager/website/notes.html
===================================================================
--- SwiftApps/Cybershake/app/post/RunManager/website/notes.html	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/RunManager/website/notes.html	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,20 @@
+<html>
+<head>
+<title>CyberShake Run Manager</title>
+</head>
+<body>
+<p>
+<h2>CyberShake Run Manager</h2>
+<hr>
+<p>
+<h3>Notes</h3>
+<p>
+State transition diagram:<br>
+<img src="CyberShake-STD.png">
+<p>
+<hr>
+<p>
+© 2009 <a href="http://www.scec.org">Southern California Earthquake Center<a>, USC<br>
+Maintained by <a href="mailto:patrices at usc.edu">Patrick Small</a><p>
+</body>
+</html>

Added: SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/Makefile
===================================================================
--- SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/Makefile	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/Makefile	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,50 @@
+TARGET	= surfseis_rspectra
+PARM	= ../setparm/setparm180.f
+
+include ../../Compilers.mk
+IFORT = $(shell which ifort 2> /dev/null)
+ICC = $(shell which icc 2> /dev/null)
+GNUFORT = $(shell which gfortran 2> /dev/null)
+GNUCC = $(shell which gcc 2> /dev/null)
+
+#UFLAGS = -O3
+UFLAGS =
+
+# Determine compiler preferences:
+# If ifort/icc exist, use those compilers
+# else if gfortran/gcc exist, use those compilers
+# else fall to defaults in Compilers.mk
+ifneq (,$(IFORT))
+   FC = ifort
+   FFLAGS = $(UFLAGS)  -132
+else
+   ifneq (,$(GNUFORT))
+       FC = gfortran
+       FFLAGS = -static -m32 $(UFLAGS) $(MY_FFLAGS)
+   else
+       FC = $(MY_FC)
+       FFLAGS = $(UFLAGS) $(MY_FFLAGS)
+   endif
+endif
+
+ifneq (,$(ICC))
+   CC = icc
+   CFLAGS = $(UFLAGS) -mia32
+else
+   ifneq (,$(GNUCC))
+       CC = gcc
+       CFLAGS = -static -m32 $(UFLAGS) $(MY_CFLAGS)
+   else
+       CC = $(MY_CC)
+       CFLAGS = $(UFLAGS) $(MY_CFLAGS)
+   endif
+endif
+
+
+all: $(TARGET) 
+
+surfseis_rspectra: sub_bandpass.o surfseis_rspectra.o
+	$(FC) $(FFLAGS) -o $@ $^ $(PARM)
+
+clean:
+	rm -f $(TARGET) *.o


Property changes on: SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/Makefile
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/sub_bandpass.c
===================================================================
--- SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/sub_bandpass.c	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/sub_bandpass.c	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,228 @@
+/* subroutine to perform Butterworth filter.
+Original code is from Stanford SEP group (David Hale).
+
+For this subroutine, make sure the incoming and outgoing
+arrays are allocated with two extra samples:
+	y[nt+2] and x[nt+2].
+
+For most other applications the exra two samples will never be
+used.  Unfortunately this code needs them.
+
+stanford_bandpass_(y_in, x_out, nt,dt, flo, fhi, npolelo, npolehi, phase)
+*/
+
+/* bandpass Butterworth filter 
+
+bandpass nt= [ dt=1. nx=all ny=1 in=stdin out=stdout flo=0. fhi=0.5/dt 
+	     nplo=6 nphi=6 phase=0 ]
+
+nt, dt, nx, ny	trace length, sampling interval, number of traces
+in, out		input, output filenames
+flo, fhi	low and high cutoff frequencies; 
+		flo=0 for lowpass filter; fhi=0.5/dt for highpass;
+		gain at flo and fhi is:	-6db for zero-phase filter
+					-3db for minimum-phase filter
+nplo, nphi	number of poles for low and high cutoffs;
+		filter rolloff rate is proportional to number of poles
+phase		=0 for zero-phase; =1 for minimum-phase
+
+Dave Hale, 2/25/82
+modified to run in core, by Jan Morton, 1/17/84
+Technical reference: Oppenheim, A.V., and Schafer, R.W., 1975, 
+Digital signal processing, Prentice Hall, Inc.
+*/
+#include <stdio.h>
+#include <sys/types.h>
+#include <sys/stat.h> 
+void stanford_bandpass_(y,x, nt_in,dt_in, flow,fhigh, npolelo,npolehi,phase_in)
+float	y[],x[],*dt_in,*flow,*fhigh;
+int	*nt_in,*npolelo,*npolehi,*phase_in;
+  {
+	int ok,nt2,j,n,nb,lopass,hipass,nd, nt,nplo,nphi,phase;
+	int m,i,nodd;
+	float b[50][5],d[50][5];
+	float dt,flo,fhi,c,a,aa,aap4,dtheta,theta0,pi=3.141593;
+	float e,ee,b1,b2,b3,den,fno2;
+	double sin(),cos();
+
+	nt = *nt_in;		 dt = *dt_in;
+	nplo = *npolelo;	 nphi = *npolehi;
+	phase = *phase_in;
+
+
+	if (nplo < 1) nplo = 1; if (nplo > 98) nplo = 98;
+	if (nphi < 1) nphi = 1; if (nphi > 98) nphi = 98;
+
+	flo = *flow * dt;
+	fhi = *fhigh * dt;
+	hipass = (flo > 0.0001);
+	lopass = (fhi < 0.4999);
+
+	nt2 = nt+2;
+
+	/* compute lowpass filter coefficients if required */
+	if (lopass)
+	  {
+		nodd = (nphi%2);
+		if (phase==0)
+		  {
+			if (nodd) nphi = (nphi+1)/2;
+			else nphi = nphi/2;
+			nodd = (nphi%2);
+		  }
+		nb = (nphi+1)/2;
+
+		a = 2.*sin(pi*fhi)/cos(pi*fhi); /* radius of poles in s-plane */
+		aa = a*a;
+		aap4 = aa+4;
+		dtheta = pi/nphi;		/* angular separation of poles */
+		theta0 = (nodd)?0:dtheta/2;	/* pole closest to real s axis */
+		if (nodd)
+		  {
+			b[0][0] = a/(a+2); 
+			b[0][1] = b[0][0]; 
+			b[0][2] = 0.;
+			b[0][3] = (a-2)/(a+2);	
+			b[0][4] = 0.;
+		  }
+		else
+		  {
+			c = 4.*a*cos(theta0);
+			b[0][0] = aa/(aap4+c);
+			b[0][1] = 2.*b[0][0];
+			b[0][2] = b[0][0];
+			b[0][3] = (2.*aa-8.)/(aap4+c);
+			b[0][4] = (aap4-c)/(aap4+c);
+		  }
+		for (j = 1; j < nb; j++)
+		  {
+			c = 4.*a*cos(theta0+j*dtheta);
+			b[j][0] = aa/(aap4+c);
+			b[j][1] = 2.*b[j][0];
+			b[j][2] = b[j][0];
+			b[j][3] = (2.*aa-8.)/(aap4+c);
+			b[j][4] = (aap4-c)/(aap4+c);
+		  }
+	  }
+
+	/* compute highpass filter coefficients if required by
+	   transforming a lowpass filter with cutoff at half Nyquist */
+	if (hipass)
+	  {
+		nodd = (nplo%2);
+		if (phase==0)
+		  {
+			if (nodd) nplo = (nplo+1)/2;
+			else nplo = nplo/2;
+			nodd = (nplo%2);
+		  }
+		nd = (nplo+1)/2;
+		fno2 = 0.25;
+		a = 2.*sin(pi*fno2)/cos(pi*fno2); aa = a*a; aap4 = aa+4;
+		e = -cos(pi*(flo+fno2))/cos(pi*(flo-fno2)); ee = e*e;
+		dtheta = pi/nplo; theta0 = (nodd)?0:dtheta/2;
+		if (nodd)
+		  {
+			b1 = a/(a+2);
+			b2 = (a-2)/(a+2);
+			den = 1.-b2*e;
+			d[0][0] = b1*(1.-e)/den;
+			d[0][1] = -d[0][0];
+			d[0][2] = 0.;
+			d[0][3] = (e-b2)/den;
+			d[0][4] = 0.;
+		  }
+		else
+		  {
+			c = 4.*a*cos(theta0);
+			b1 = aa/(aap4+c);
+			b2 = (2.*aa-8.)/(aap4+c);
+			b3 = (aap4-c)/(aap4+c);
+			den = 1.-b2*e+b3*ee;
+			d[0][0] = b1*(1.-e)*(1.-e)/den;
+			d[0][1] = -2.*d[0][0];
+			d[0][2] = d[0][0];
+			d[0][3] = (2.*e*(1.+b3)-b2*(1.+ee))/den;
+			d[0][4] = (ee-b2*e+b3)/den;
+		  }
+		for (j = 1; j < nd; j++)
+		  {
+			c = 4.*a*cos(theta0+j*dtheta);
+			b1 = aa/(aap4+c);
+			b2 = (2.*aa-8.)/(aap4+c);
+			b3 = (aap4-c)/(aap4+c);
+			den = 1.-b2*e+b3*ee;
+			d[j][0] = b1*(1.-e)*(1.-e)/den;
+			d[j][1] = -2.*d[j][0];
+			d[j][2] = d[j][0];
+			d[j][3] = (2.*e*(1.+b3)-b2*(1.+ee))/den;
+			d[j][4] = (ee-b2*e+b3)/den;
+		  }
+	  }
+
+
+/* Now do seismogram: */
+
+	/* apply filters */
+		for (m=2;m<nt2;m++)
+			x[m]=y[m-2];
+		x[0]=0.;
+		y[0]=0.;
+		x[1]=0.;
+		y[1]=0.;
+		if (lopass)
+		{
+			for (i=nb; i>0; i--)
+			{
+				j=nb-i;
+				for (m=2; m<nt2; m++)
+				y[m]=b[j][0]*x[m]+b[j][1]*x[m-1]+b[j][2]*x[m-2]-b[j][3]*y[m-1]-b[j][4]*y[m-2];
+				for (m=2;m<nt2;m++)
+					x[m]=y[m];
+			}
+		if (phase==0)
+			{
+			for (m=2;m<nt2;m++)
+				y[m]=x[nt2+1-m];
+			for (i=nb; i>0; i--)
+			{
+				j=nb-i;
+				for (m=2; m<nt2; m++)
+				x[m]=b[j][0]*y[m]+b[j][1]*y[m-1]+b[j][2]*y[m-2]-b[j][3]*x[m-1]-b[j][4]*x[m-2];
+				for (m=2; m<nt2; m++)
+					y[m]=x[m];
+			}
+			for (m=2; m<nt2; m++)
+				x[m]=y[nt2+1-m];
+			}
+		}
+		if (hipass)
+		{
+			for (i=nd; i>0; i--)
+			{
+				j=nd-i;
+				for (m=2; m<nt2; m++)
+				y[m]=d[j][0]*x[m]+d[j][1]*x[m-1]+d[j][2]*x[m-2]-d[j][3]*y[m-1]-d[j][4]*y[m-2];
+				for (m=2;m<nt2;m++)
+					x[m]=y[m];
+			}
+		if (phase==0)
+			{
+			for (m=2;m<nt2;m++)
+				y[m]=x[nt2+1-m];
+			for (i=nd; i>0; i--)
+			{
+				j=nd-i;
+				for (m=2; m<nt2; m++)
+				x[m]=d[j][0]*y[m]+d[j][1]*y[m-1]+d[j][2]*y[m-2]-d[j][3]*x[m-1]-d[j][4]*x[m-2];
+				for (m=2; m<nt2; m++)
+					y[m]=x[m];
+			}
+			for (m=2; m<nt2; m++)
+				x[m]=y[nt2+1-m];
+			}
+		}
+
+  }
+
+

Added: SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/surfseis_rspectra
===================================================================
(Binary files differ)


Property changes on: SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/surfseis_rspectra
___________________________________________________________________
Added: svn:executable
   + *
Added: svn:mime-type
   + application/octet-stream

Added: SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/surfseis_rspectra.f
===================================================================
--- SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/surfseis_rspectra.f	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/SpectralAcceleration/p2utils/surfseis_rspectra.f	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,1471 @@
+c=============================================================
+c NOTE: BEFORE COMPILING, SEE LINES 88-96 FOR SYSTEM DEPENDENCIES  02Sep05
+c=============================================================
+c This version of rspectra.f is modified to work within the SCEC/ITR
+c	Community Modeling Environment (CME) framework.
+c The original code operates on a single seismogram.
+c This version operates on #X number of seismogams where #X can be
+c	expressed as an N x M block of seismograms (such as 
+c	NX by NY surface locations).
+c
+c Seismogram format is raw binary ("Surface Seismogram" or "KBO" format).
+c Incoming seismograms are assumed to be velocity (but can be acceleration).
+c Pre-process options for demean, vel->acceleration, and filter are installed.
+c Dreger code originally assumes acceleration in CGS units.  So installed
+c 	is a preprocess option to convert velocity seismograms from
+c	MKS to CGS in preparation for vel->acceleration conversion.
+c Input communication is via command line attributes in place
+c	of the text parameter files.
+c
+c Blocks of original code not needed for this modification are
+c	commented out using the string CME.
+c
+c Original output values are:
+C   > 70     write(9,5) n,1/t(n),rd(n),rv(n),prv(n),aa(n),pra(n),b(n),t(n)
+c real component of displacement  spectrum:    > rd(it)=z(1)
+c real component of velocity      spectrum:    > rv(it)=z(2)
+c real component of acceleration  spectrum:    > aa(it)=z(3)/981.0
+c imaginary component of velocity spectrum:    > prv(it)=w*z(1)
+c imaginary component of velocity spectrum:    > pra(it)=w*prv(it)/981.0
+c relative real comp. acceleration:            > b(it)=aa(it)/amax
+c
+c imaginary vel = i*w* real displacement   where w = period = 2pi/T
+c imaginary acc = i*w* real velocity    
+c
+c and   accel = xx / 981.  converts cm/s^2 to units of g.
+c
+c--------------------
+c 17 may 05	D. Okaya	initial modification of rspectra.f
+c 28 may 05	D. Okaya	replace C I/O with f90 I/O.
+c 01 jun 05	D. Okaya	Butterworth filter (Stanford code).
+c 02 jun 05	D. Okaya	options regarding input units. 
+c 02 sep 05	D. Okaya	(1) Intel/Linux vs. other f90 portability:
+c				 	file I/O record length sizing.
+c 				(2) options regarding output units.
+c 				(3) output decimation option.
+c 04 sep 05	D. Okaya	Output options: text, all periods.
+c 09 sep 05	D. Okaya	add a byteswap option right after read.
+c 31 aug 07 G. Juve     Overwrite output; non-zero exit codes
+c
+c=============================================================
+c=============================================================
+
+c     program SPECTRAD
+c Otput format modified to WESSA's format
+c
+c
+	implicit none
+
+	integer		maxperiod,maxdamp,maxnpt
+      parameter(maxperiod=305, maxdamp=10, maxnpt=60000)
+      real t(maxperiod),rd(maxperiod),rv(maxperiod),prv(maxperiod),
+     , aa(maxperiod), pra(maxperiod), damp(maxdamp),
+     , a(maxnpt),time(maxnpt),b(maxperiod),z(3), peat(112), scec(27)
+	real outarray(maxperiod)
+c
+CME   character title*75,head*75,fdesc*20,ifile*40,ofile*40,rfile*40,
+CME  , word*75,fmt*40
+	character title*75,head*75,fdesc*20,ifile*120,ofile*120,rfile*120,
+     ,	   word*75,fmt*40
+
+	integer		ntpea,nscec,kg
+	integer		i,k,kug,id,it,nt,n,	nt2
+	real		pga,amax,v1,d1,vm,dm,vt,td,tmv,tmd,tma,w,dur1
+c
+      logical stp,free
+
+	character*120	cperiod,cout_choice,cin_units,cout_units
+	character*120	capply_demean,capply_filter,capply_vel2accel
+	character*120	capply_byteswap
+	integer		nx,ny,npts,npts2,ndamp
+	integer		ierr,ichk, krecin, krecout
+	integer		ix,iy,		jperiod_out,jperiod0,jperiod1
+	integer		jout_format,jout_numperiods
+	real		dt,fac,filter_lowHZ,filter_highHZ
+	real		work(maxnpt), 	period_out,	scalar
+
+	real, dimension (:,:),	allocatable :: outvalue
+
+	common	/knodes/koutnx,koutx0,koutx1,koutdx, koutx,
+     +			koutny,kouty0,kouty1,koutdy, kouty
+	integer		koutnx,koutx0,koutx1,koutdx, koutx,
+     +			koutny,kouty0,kouty1,koutdy, kouty
+
+c--------------------------------------------------------------
+c OS/FORTRAN PORTABILITY for binary file I/O (Linux/Intel words; others bytes)
+	integer		INTELf90,OTHERf90
+	parameter	(INTELf90=1, OTHERf90=4)
+
+	common		/F90_REC_COUNTING/REC_COUNT
+	integer				  REC_COUNT
+
+c set here:
+	REC_COUNT = INTELf90
+c--------------------------------------------------------------
+
+c
+1     format(/,
+     , 10x,' *************************************************',/,
+     , 10x,' *          Program SPECTRA version 1.0          *',/,
+     , 10x,' * Copyright GEOMATRIX Consultants, January 1986 *',/,
+     , 10x,' *            written by Robert Youngs           *',/,
+     , 10x,' *************************************************',/)
+        data  ntpea/112/, peat/
+     +.2000000E+02,.1499925E+02,.1399972E+02,.1300052E+02,.1200048E+02,
+     +.1099989E+02,.1000000E+02,.9500286E+01,.9000090E+01,.8499788E+01,
+     +.8000000E+01,.7500187E+01,.6999860E+01,.6499837E+01,.5999880E+01,
+     +.5499945E+01,.5000000E+01,.4800076E+01,.4600028E+01,.4400053E+01,
+     +.4199916E+01,.4000000E+01,.3799970E+01,.3599971E+01,.3399973E+01,
+     +.3200000E+01,.3000030E+01,.2800022E+01,.2599969E+01,.2399981E+01,
+     +.2199978E+01,.2000000E+01,.1899985E+01,.1800018E+01,.1699986E+01,
+     +.1600000E+01,.1499992E+01,.1399991E+01,.1300001E+01,.1200005E+01,
+     +.1100001E+01,.1000000E+01,.9500016E+00,.9000010E+00,.8500004E+00,
+     +.8000000E+00,.7500019E+00,.7000007E+00,.6666667E+00,.6500006E+00,
+     +.5999989E+00,.5500006E+00,.5000000E+00,.4800008E+00,.4600007E+00,
+     +.4399995E+00,.4200005E+00,.4000000E+00,.3799998E+00,.3600010E+00,
+     +.3399996E+00,.3200000E+00,.3000003E+00,.2898550E+00,.2799999E+00,
+     +.2600003E+00,.2399998E+00,.2200002E+00,.2000000E+00,.1899999E+00,
+     +.1799998E+00,.1700001E+00,.1600000E+00,.1499999E+00,.1399999E+00,
+     +.1333333E+00,.1300000E+00,.1200001E+00,.1100000E+00,.1000000E+00,
+     +.9500015E-01,.9000009E-01,.8500005E-01,.8000000E-01,.7500019E-01,
+     +.7000007E-01,.6666667E-01,.6500007E-01,.5999988E-01,.5500005E-01,
+     +.5000000E-01,.4800008E-01,.4600007E-01,.4399995E-01,.4200005E-01,
+     +.4000000E-01,.3571429E-01,.3225806E-01,.2941176E-01,.2500000E-01,
+     +.2222222E-01,.2000000E-01,.1818182E-01,.1666667E-01,.1538462E-01,
+     +.1428571E-01,.1333333E-01,.1250000E-01,.1176471E-01,.1111111E-01,
+     +.1052632E-01,.1000000E-01/
+        data  nscec/27/, scec/
+     +.1000000E+02,.9500286E+01,.9000090E+01,.8499788E+01,
+     +.8000000E+01,.7500187E+01,.6999860E+01,.6499837E+01,.5999880E+01,
+     +.5499945E+01,.5000000E+01,.4800076E+01,.4600028E+01,.4400053E+01,
+     +.4199916E+01,.4000000E+01,.3799970E+01,.3599971E+01,.3399973E+01,
+     +.3200000E+01,.3000030E+01,.2800022E+01,.2599969E+01,.2399981E+01,
+     +.2199978E+01,.2000000E+01,.1000000E-01/
+c
+CMEc  print 1
+CME   fdesc='input '
+CME   close(7)
+CME   call flchk('i',fdesc,ifile,stp)
+CME   if(stp) STOP
+CME   open(7,file=ifile)
+CME99  read (7,2,end=2999) title
+CME   read (7,*) nt,(t(i),i=1,nt)
+CMEc
+CMEc  if nt = 0 load TI periods
+CMEc     nt =-1 load SCEC periods
+CMEc
+CME      if(nt.eq.0) then
+CME        nt=ntpea
+CME        do 10 i=1,nt
+CME10     t(i)=peat(i)
+CME   elseif(nt.eq.-1) then
+CME     nt=nscec
+CME     do 11 i=1,nt
+CME11       t(i)=scec(i)
+CME      ENDif
+CMEc
+CMEc...read input data
+CMEc
+CME   read(7,3) rfile
+CME   read(7,3) ofile
+CME   length=index(ofile,'  ')
+CME   read(7,3) fmt
+CME   if(fmt.eq.'*'.or.fmt.eq.'standard'.or.fmt.eq.'STANDARD') then
+CME     free=.true.
+CME    else
+CME     free=.false.
+CME   ENDif
+CME   read(7,*) nhead,npts,fac,dt,ndamp,(damp(i),i=1,ndamp)
+CMEc   added close doug
+CME   close (7)
+CME   if(fmt.eq.'standard'.or.fmt.eq.'STANDARD') then
+CME     nhead = 2
+CME   endif
+
+CME   open(8,file=rfile)
+CME   if(nhead.eq.0) then
+CME     head=title
+CME   else
+CME     read(8,2) head
+CME     if(nhead.gt.1) then
+CME       do 20 i = 2,nhead
+CME20     read(8,2) word
+CME     ENDif
+CME     if(fmt.eq.'standard'.or.fmt.eq.'STANDARD') then
+CME       read(8,*) npts, dt
+CME     endif
+CME   ENDif
+CME   ims=0
+CME   if(free) then
+CME     if(dt.eq.0) then
+CME       read(8,*) (time(l),a(l),l=1,npts)
+CME      else
+CME       read(8,*) (a(l),l=1,npts)
+CME     ENDif
+CME    else
+CME     if(dt.eq.0) then
+CME       read(8,fmt) (time(l),a(l),l=1,npts)
+CME      else
+CME       read(8,fmt) (a(l),l=1,npts)
+CME     ENDif
+CME   ENDif
+CME   close (8)
+
+	
+	call getparms(ifile,ofile,nx,ny,npts,dt, fac,ndamp,damp,maxdamp,
+     +		cperiod, capply_demean,capply_filter,capply_vel2accel,
+     +		filter_lowHZ,filter_highHZ,period_out,capply_byteswap,
+     +		cout_choice,cin_units,cout_units,jout_format,jout_numperiods)
+
+	call runtime_doc(nx,ny,npts,dt, fac,ndamp,damp,maxdamp,
+     +		cperiod, capply_demean,capply_filter,capply_vel2accel,
+     +		filter_lowHZ,filter_highHZ,period_out,capply_byteswap,
+     +		cout_choice,cin_units,cout_units,jout_format,jout_numperiods)
+
+	call check_units_vel2accel(cin_units,capply_vel2accel)
+
+
+c     if nt = 0 load TI periods
+c        nt =-1 load SCEC periods
+c
+CME   if(nt.eq.0) then
+CME        nt=ntpea
+CME        do 10 i=1,nt
+CME10      t(i)=peat(i)
+CME   elseif(nt.eq.-1) then
+CME        nt=nscec
+CME        do 11 i=1,nt
+CME11      t(i)=scec(i)
+CME   ENDif
+      if(cperiod .EQ. 'TI')then
+           nt=ntpea
+           do 10 i=1,nt
+10         t(i)=peat(i)
+      elseif(cperiod .EQ. 'SCEC') then
+           nt=nscec
+           do 11 i=1,nt
+11         t(i)=scec(i)
+      ENDif
+
+	call get_periodout(t,nt,jout_numperiods,period_out,jperiod_out,
+     +							jperiod0,jperiod1)
+
+c define array of sample times
+	do i = 1,npts
+		time(i) = float(i-1) * dt
+	enddo
+
+	ierr = 0
+	call open_files(ifile,ofile,npts,koutnx,jout_format,
+     +						jout_numperiods,nt,ierr)
+	if(ierr .EQ. 1) write(6,21)
+	if(ierr .EQ. 2) write(6,22)
+	if(ierr .GT. 0) call exit(1)
+21	format('Surfseis_rspectra> ERROR OPENING INPUT DATA FILE')
+22	format('Surfseis_rspectra> ERROR CREATING OUTPUT DATA FILE')
+
+c get work memory
+c	allocate (outvalue(nx,ny))
+c	do 1999 iy = 1,ny
+c	do 1999 ix = 1,nx
+c1999	outvalue(ix,iy) = 0.
+ 	allocate (outvalue(koutnx,koutny))
+ 	do 1999 iy = 1,koutny
+ 	do 1999 ix = 1,koutnx
+ 1999	outvalue(ix,iy) = 0.
+
+c At beginning of a SurfSeis file - loop over NY x NX seismograms
+c We are reading velocity seismograms, not acceleration.
+	koutx = 0
+	kouty = 0
+	krecin = 0
+	krecout = 0
+
+c	do 3000 iy = 1,ny
+c	do 2000 ix = 1,nx
+	do 3000 iy = kouty0,kouty1,koutdy
+		kouty = kouty + 1
+		koutx = 0
+	do 2000 ix = koutx0,koutx1,koutdx
+c	krecin = krecin + 1
+	krecin = (iy-1)*nx + ix
+	read (21,rec=krecin) (a(i),i=1,npts)
+
+	if(capply_byteswap .EQ. 'yes')call seismogram_byteswap(a,npts)
+
+	if(cin_units .EQ. 'meterpersec' .OR. cin_units .EQ. 'meterpersec2')
+     +				call seismogram_mks2cgs(a,npts)
+
+	if(capply_demean .EQ. 'yes')call seismogram_demean(a,npts,work)
+	if(capply_vel2accel .EQ. 'yes')call seismogram_vel2accel(a,npts,work,dt)
+	if(capply_filter .EQ. 'yes')then
+c	    call seismogram_filter(a,npts,work,dt,filter_lowHZ,filter_highHZ)
+	    npts2 = npts+2
+	    call seismogram_stanford(a,npts,npts2,work,dt,
+     +					filter_lowHZ,filter_highHz)
+	endif
+
+      pga = 0.0
+      kg=npts
+      if(dt.ne.0) then
+        do 30 i=1,kg
+        pga = max(pga, abs(a(i)))
+30      time(i)=real(i-1)*dt
+      ENDif
+      if(fac.ne.1.0) then
+        do 35 i=1,kg
+35        a(i)=a(i)*fac
+      ENDif
+c
+c       write (*,*) ofile
+CME     open(9,file=ofile)
+CME     write (9,*)' RESPONSE SPECTRA'
+CME     write (9,*) title
+CME     write (9,'(a17,a11,a25,i6,a9,i6,a7,f5.2)')
+CME  1  'INPUT FILE NAME: ', rfile,
+CME  1  ', WINDOW UTILIZED: POINT ', 1, ' TO POINT', npts,
+CME  1  ' PGA = ',pga
+
+
+CME NOTE: for below block of code, the write statement is commented
+CME	out by the author.  The only parameter required beyond this
+CME	block is 'amax'.  As a result we comment out this whole block
+CME	and just preserve the calculation of amax.
+c
+c...find max velocity, displacement, and acceleration
+c
+CME   amax=0.0
+CME   v1=0.
+CME   d1=0.
+CME   vm=0.
+CME   dm=0.
+CME   do 40 k=1,kg-1
+CME     vt=v1+0.5*(time(k+1)-time(k))*(a(k)+a(k+1))
+CME     td=d1+(time(k+1)-time(k))*(v1+(time(k+1)-time(k))*a(k)/3.+
+CME  ,   (time(k+1)-time(k))*a(k+1)/6.)
+CME     if(abs(vt).gt.vm) then
+CME       vm=abs(vt)
+CME       tmv=time(k+1)
+CME     ENDif
+CME     if(abs(td).gt.dm) then
+CME       dm=abs(td)
+CME       tmd=time(k+1)
+CME     ENDif
+CME     if(abs(a(k)).gt.amax) then
+CME       amax=abs(a(k))
+CME       tma=time(k+1)
+CME     ENDif
+CME     v1=vt
+CME     d1=td
+CME40   CONTINUE
+CME   vm=981.*vm
+CME   dm=981.*dm
+CMEc  write (6,4) dm,tmd,vm,tmv,amax,tma
+
+	amax = 0.0
+	do 40 k = 1,kg-1
+	    if(abs(a(k)) .GT. amax)then
+		amax = abs(a(k))
+	    endif
+40	continue
+	IF(AMAX .EQ. 0.)AMAX = 1.
+c
+c... convert acc's to cm/sec**2
+c
+      do 50 i=1,kg
+50      a(i)=a(i)*981.0
+
+c
+c   compute response
+c
+      kug=kg-1
+      do 100 id=1,ndamp
+CME     do 60 it=1,nt
+        do 60 it=jperiod0,jperiod1
+          w=4.*asin(1.0)/t(it)
+c
+c...compute response
+c
+          if(dt.eq.0.0 .or. t(it).lt.10.*dt) then
+            call ucmpmx(dur1,kug,a,time,t(it),w,damp(id),z)
+           else
+            call cmpmax(dur1,kug,a,t(it),w,damp(id),dt,z)
+          ENDif
+          rd(it)=z(1)
+          rv(it)=z(2)
+          aa(it)=z(3)/981.0
+          prv(it)=w*z(1)
+          pra(it)=w*prv(it)/981.0
+          b(it)=aa(it)/amax
+60        CONTINUE
+c
+c   output values
+c
+c       write(9,*)' dampimg = ',damp(id)
+CME     write (9,'(i5,1x,f4.3,a63)') nt, damp(id),
+CME  1 'DATA- MTIT,EQN,NO PTS,DAMP,NO,FRQ,RD,RV,PRV,AA,PAA,MAG RAT,PER'
+CME
+CME     do 70 n=1,nt
+CME70     write(9,5) n,1/t(n),rd(n),rv(n),prv(n),aa(n),pra(n),b(n),t(n)
+
+100     CONTINUE
+
+CME199    format(27e12.4)
+CME     if(nt.eq.nscec) then
+CME       write(*,199) (aa(i)*980,i=1,nt)
+CME     ENDIF
+CME     close(9)
+CME   go to 99
+
+
+c scalar for output units (at this point r,v in CGS; a in g)
+	scalar = 1.
+	if(cout_units .EQ. 'meters')		scalar = .01
+	if(cout_units .EQ. 'cm')		scalar = 1.
+	if(cout_units .EQ. 'meterpersec')	scalar = .01
+	if(cout_units .EQ. 'cmpersec')		scalar = 1.
+c accel in g
+	if(cout_units .EQ. 'meterpersec2')	scalar = 9.80
+	if(cout_units .EQ. 'cmpersec2')		scalar = 980.
+	if(cout_units .EQ. 'unitsofg')		scalar = 1.
+	if(cout_units .EQ. 'percentg')		scalar = 100.
+	if(scalar .EQ. 0.)scalar = 1.
+
+c select output choice and scale per user request.
+	if(cout_choice .EQ. 'rd')then
+		do 200 it=jperiod0,jperiod1
+200		outarray(it) = scalar * rd(it)
+	elseif(cout_choice .EQ. 'rv')then
+		do 210 it=jperiod0,jperiod1
+210		outarray(it) = scalar * rv(it)
+	elseif(cout_choice .EQ. 'prv')then
+		do 220 it=jperiod0,jperiod1
+220		outarray(it) = scalar * prv(it)
+	elseif(cout_choice .EQ. 'aa')then
+		do 230 it=jperiod0,jperiod1
+230		outarray(it) = scalar * aa(it)
+	elseif(cout_choice .EQ. 'paa')then
+		do 240 it=jperiod0,jperiod1
+240		outarray(it) = scalar * pra(it)
+	elseif(cout_choice .EQ. 'magrat')then
+		do 250 it=jperiod0,jperiod1
+250		outarray(it) = scalar * b(it)
+	endif
+
+
+c SAVE this seismogram's value or OUTPUT
+
+c One period: save desired parameter/period for later output
+	if(jout_numperiods .EQ. 1)then
+		koutx = koutx + 1
+		outvalue(koutx,kouty) = outarray(jperiod_out)
+
+c All periods: output outarray() now (jout_format=0 is binary, =1 is text).
+	elseif(jout_numperiods .EQ. 0)then
+		if(jout_format .EQ. 0)then
+			krecout = krecout + 1
+			write(22,rec=krecout) (outarray(i),i=1,nt)
+		elseif(jout_format .EQ. 1)then
+			if(cperiod .EQ. 'TI')then
+				write(22,300) ix,iy,(outarray(i),i=1,nt)
+			elseif(cperiod .EQ. 'SCEC')then
+				write(22,310) ix,iy,(outarray(i),i=1,nt)
+			endif
+300			format(2i7,112e12.5)
+310			format(2i7,27e12.5)
+		endif
+	endif
+
+c end of individual seismogram work: continue loops over seismograms
+2000	continue
+3000	continue
+
+
+c If ONE period, write results at this time
+	if(jout_numperiods .EQ. 1)then
+		if(jout_format .EQ. 0)then
+c 		now save results - grid of NX x NY elements:
+		    krecout=0
+		    do iy = 1,koutny
+		    	krecout = krecout + 1
+		    	write(22,rec=krecout) (outvalue(i,iy),i=1,koutnx)
+		    enddo
+
+		elseif(jout_format .EQ. 1)then
+		    do iy = 1,koutny
+		    do ix = 1,koutnx
+			write(22,400)koutx0+koutdx*(ix-1),kouty0+koutdy*(iy-1),
+     +							outvalue(ix,iy)
+400			format(2i7,e12.5)
+		    enddo
+		    enddo
+
+		endif
+	endif
+
+c shutdown
+	deallocate(outvalue)
+	close(21)
+	close(22)
+
+c
+2     format(a75)
+3     format(a40)
+4     format(/,' max disp = ',f10.5,' cm at time = ', f10.5, ' secs',/
+     , ' max vel = ',f10.5,' cm/sec at time = ', f10.5, ' secs',/
+     , ' max accel = ',f10.5,' g at time = ', f10.5, ' secs')
+5     format(i3,8e15.7)
+6     format(i7,' points uneq dt  parameters are t,sd,sv,psv,sa,mr',
+     , /,i5)
+7     format(i7,' points',f6.3,' dt  parameters are t,sd,sv,psv,sa,mr',
+     , /,i5)
+2999  stop
+      END
+
+      subroutine ucmpmx(dur1,kug,ug,time,pr,w,d,z)
+      real ug(*),time(*),z(*),t(3),c(3),x(2,3)
+c
+      wd=sqrt(1.-d*d)*w
+      w2=w*w
+      w3=w2*w
+      do 10 i=1,3
+        x(1,i)=0.
+ 10     z(i)=0.
+      f2=1./w2
+      f3=d*w
+      f4=1./wd
+      f5=f3*f4
+      f6=2.*f3
+      do 100 k=1,kug
+        dt=time(k+1)-time(k)
+        ns=nint(10.*dt/pr)+1
+        dt=dt/real(ns)
+        f1=2.*d/w3/dt
+        e=exp(-f3*dt)
+        g1=e*sin(wd*dt)
+        g2=e*cos(wd*dt)
+        h1=wd*g2-f3*g1
+        h2=wd*g1+f3*g2
+        dug=(ug(k+1)-ug(k))/real(ns)
+        g=ug(k)
+        z1=f2*dug
+        z3=f1*dug
+        z4=z1/dt
+        do 100 is=1,ns
+          z2=f2*g
+          b=x(1,1)+z2-z3
+          a=f4*x(1,2)+f5*b+f4*z4
+          x(2,1)=a*g1+b*g2+z3-z2-z1
+          x(2,2)=a*h1-b*h2-z4
+          x(2,3)=-f6*x(2,2)-w2*x(2,1)
+          do 80 l=1,3
+            c(l)=abs(x(2,l))
+            if(c(l).gt.z(l)) then
+              z(l)=c(l)
+              t(l)=time(k)+is*dt+dur1
+            ENDif
+80          x(1,l)=x(2,l)
+          g=g+dug
+100       CONTINUE
+c     write(6,1) pr,(t(l),l=1,3)
+      return
+1     format(' ucmpmx t=',f6.3,' td = ',f8.4,' tv = ',f8.4,' ta = ',
+     , f8.4)
+      end
+
+      subroutine cmpmax(dur1,kug,ug,pr,w,d,dt,z)
+      real ug(*),x(2,3),t(3),z(*),c(3)
+c
+      wd=sqrt(1.-d*d)*w
+      w2=w*w
+      w3=w2*w
+      do 10 i=1,3
+        x(1,i)=0.
+10       z(i)=0.
+      f1=2.*d/(w3*dt)
+      f2=1./w2
+      f3=d*w
+      f4=1./wd
+      f5=f3*f4
+      f6=2.*f3
+      e=exp(-f3*dt)
+      g1=e*sin(wd*dt)
+      g2=e*cos(wd*dt)
+      h1=wd*g2-f3*g1
+      h2=wd*g1+f3*g2
+      do 100 k=1,kug
+        dug=ug(k+1)-ug(k)
+        z1=f2*dug
+        z2=f2*ug(k)
+        z3=f1*dug
+        z4=z1/dt
+        b=x(1,1)+z2-z3
+        a=f4*x(1,2)+f5*b+f4*z4
+        x(2,1)=a*g1+b*g2+z3-z2-z1
+        x(2,2)=a*h1-b*h2-z4
+        x(2,3)=-f6*x(2,2)-w2*x(2,1)
+        do 80 l=1,3
+          c(l)=abs(x(2,l))
+          if(c(l).gt.z(l)) then
+            z(l)=c(l)
+            t(l)=dt*real(k)+dur1
+          ENDif
+80        x(1,l)=x(2,l)
+100     CONTINUE
+c     write(6,1) pr,(t(l),l=1,3)
+      return
+1     format(' cmpmax t=',f6.3,' td = ',f8.4,' tv = ',f8.4,' ta = ',
+     , f8.4)
+      end
+
+      subroutine flchk(ftype,fdesc,filen,stp)
+      character type,ftype,filen*(*),answer*40,fdesc*20
+      logical fexst,stp
+c
+      if(ftype.eq.'d') then
+        type='i'
+        go to 20
+       elseif(ftype.eq.'w') then
+        type='o'
+        go to 20
+       else
+        type=ftype
+      ENDif
+c     print'('' enter '',a20,''file name(q to quit): '')',fdesc
+10    read(5,1) answer
+      if(answer.eq.'q'.or.answer.eq.'Q') then
+        stp=.true.
+        return
+       else
+        filen=answer
+        stp=.false.
+      ENDif
+20      inquire(file=filen,exist=fexst)
+        if(type.eq.'i') then
+          if(.not.fexst) then
+            print'(1x,a20,''file '',a30,'' does not exist'',/,
+     ,       '' enter new name or q to quit: '')',fdesc,filen
+            go to 10
+          END if
+         else if(type.eq.'o') then
+          if(fexst) then
+            print'(1x,a20,''file '',a30,'' exists'',/,'' enter y to '',
+     ,       ''overwrite, q to quit or new name:  '')',fdesc,filen
+            read(5,1) answer
+            if (answer.eq.'y' .or. answer.eq.'Y') then
+              stp=.false.
+             else if(answer.eq.'q'.or.answer.eq.'Q') then
+              stp=.true.
+             else
+              filen=answer
+              go to 20
+            END if
+
+          END if
+        END if
+c     END if
+      return
+1     format(a40)
+      END
+
+
+
+
+c==================================================================
+	subroutine getparms(ifile,ofile,nx,ny,npts,dt, fac,ndamp,damp,maxdamp,
+     +		cperiod, capply_demean,capply_filter,capply_vel2accel,
+     +		filter_lowHZ,filter_highHZ,period_out,capply_byteswap,
+     +		cout_choice,cin_units,cout_units,jout_format,jout_numperiods)
+	implicit none
+
+	character*120	ifile,ofile,cperiod, cout_choice,cin_units,cout_units
+	character*120	capply_demean,capply_filter,capply_vel2accel
+	character*120	cout_format,cout_numperiods,	capply_byteswap
+	integer		nx,ny,npts,ndamp,maxdamp
+	integer		jout_format,jout_numperiods
+	real		dt,fac,damp(maxdamp),filter_lowHZ,filter_highHZ
+	real		period_out
+
+	common	/knodes/koutnx,koutx0,koutx1,koutdx, koutx,
+     +			koutny,kouty0,kouty1,koutdy, kouty
+	integer		koutnx,koutx0,koutx1,koutdx, koutx,
+     +			koutny,kouty0,kouty1,koutdy, kouty
+
+	integer setparms,setparmi,setparmf
+	integer	ichk,numfiles,ierr,	i,	kout_units
+
+	fac = .0010204
+	do i=1,maxdamp
+		damp(i) = 0.
+	enddo	
+	ndamp = 1
+	damp(ndamp) = .05
+
+	cperiod = 'SCEC'
+	cin_units   = 'meterpersec'
+	cout_choice = 'aa'
+	cout_units  = 'unitsofg'
+
+	capply_byteswap = 'no'
+	capply_demean = 'yes'
+	capply_filter = 'yes'
+	capply_vel2accel = 'yes'
+	filter_lowHZ = 0.
+	filter_highHZ = 0.
+	period_out = 2.
+
+	jout_format = 0
+	jout_numperiods = 1
+
+	ichk = 0
+	numfiles = 0
+	kout_units = -1
+
+	call loadparm('trailing')
+
+	numfiles = numfiles + setparms("in",ifile)
+	numfiles = numfiles + setparms("out",ofile)
+
+c get dimensions from input mesh size
+	ichk = setparmi("mesh_nx",nx)
+	ichk = setparmi("mesh_ny",ny)
+	ichk = setparmi("simulation_timesamples",npts)
+	ichk = setparmf("simulation_dt",dt)
+
+c override with output (possibly decimated) mesh
+	ichk = setparmi("simulation_out_pointsX",nx)
+	ichk = setparmi("simulation_out_pointsY",ny)
+	ichk = setparmi("simulation_out_timesamples",npts)
+	ichk = setparmf("simulation_out_timeskip",dt)
+
+c rspectra_specific parameters:
+	ichk = setparms("surfseis_rspectra_output_type",cout_choice)
+	ichk = setparmf("surfseis_rspectra_galstog",fac)
+
+	ichk = setparmi("surfseis_rspectra_numdampcoeffs",ndamp)
+	ichk = setparmf("surfseis_rspectra_dampcoeff1",damp(1))
+	ichk = setparmf("surfseis_rspectra_dampcoeff2",damp(2))
+	ichk = setparmf("surfseis_rspectra_dampcoeff3",damp(3))
+	ichk = setparmf("surfseis_rspectra_dampcoeff4",damp(4))
+	ichk = setparmf("surfseis_rspectra_dampcoeff5",damp(5))
+	ichk = setparmf("surfseis_rspectra_dampcoeff6",damp(6))
+	ichk = setparmf("surfseis_rspectra_dampcoeff7",damp(7))
+	ichk = setparmf("surfseis_rspectra_dampcoeff8",damp(8))
+	ichk = setparmf("surfseis_rspectra_dampcoeff9",damp(9))
+	ichk = setparmf("surfseis_rspectra_dampcoeff10",damp(10))
+
+	ichk = setparms("surfseis_rspectra_periodtype",cperiod)
+	ichk = setparms("surfseis_rspectra_period",cout_numperiods)
+	if(cout_numperiods .EQ. 'all' .OR. cout_numperiods .EQ. 'ALL')then
+		jout_numperiods = 0
+	else 
+		ichk = setparmf("surfseis_rspectra_period",period_out)
+		jout_numperiods = 1
+	endif
+
+	ichk = setparms("surfseis_rspectra_seismogram_units",cin_units)
+	kout_units = setparms("surfseis_rspectra_output_units",cout_units)
+	ichk = setparms("surfseis_rspectra_output_format",cout_format)
+
+c these are yes/no answers
+	ichk = setparms("surfseis_rspectra_apply_byteswap",capply_byteswap)
+	ichk = setparms("surfseis_rspectra_apply_demean",capply_demean)
+	ichk = setparms("surfseis_rspectra_apply_filter",capply_filter)
+	ichk = setparms("surfseis_rspectra_apply_vel2accel",capply_vel2accel)
+
+		if(dt .GT. 0)filter_highHZ = 1/(2.*dt)
+	ichk = setparmf("surfseis_rspectra_apply_filter_lowHZ",filter_lowHZ)
+	ichk = setparmf("surfseis_rspectra_apply_filter_highHZ",
+     +								filter_highHZ)
+
+		koutnx = nx
+		koutx0 = 1
+		koutx1 = nx
+		koutdx = 1
+			koutny = ny
+			kouty0 = 1
+			kouty1 = ny
+			koutdy = 1
+	ichk = setparmi("surfseis_rspectra_out_pointsXstart",koutx0)
+	ichk = setparmi("surfseis_rspectra_out_pointsXend"  ,koutx1)
+	ichk = setparmi("surfseis_rspectra_out_pointsXdel"  ,koutdx)
+	ichk = setparmi("surfseis_rspectra_out_pointsYstart",kouty0)
+	ichk = setparmi("surfseis_rspectra_out_pointsYend"  ,kouty1)
+	ichk = setparmi("surfseis_rspectra_out_pointsYdel"  ,koutdy)
+
+	call endparm()
+
+	ierr = 0
+	if(numfiles .NE. 2)	ierr = 1
+	if(nx*ny*npts .EQ. 0)	ierr = 1
+	if(dt .EQ. 0.)		ierr = 1
+	if(fac .EQ. 0.)		ierr = 1
+	if(ndamp .EQ. 0)	ierr = 1
+
+	if(cperiod .EQ. 'SCEC' .OR. cperiod .EQ. 'scec')then
+			cperiod='SCEC'
+	else
+			cperiod='TI'
+	endif
+
+	if(capply_byteswap .EQ. 'yes' .OR. capply_byteswap .EQ. 'YES')then
+			capply_byteswap = 'yes'
+	else
+			capply_byteswap = 'no'
+	endif
+
+	if(capply_demean .EQ. 'yes' .OR. capply_demean .EQ. 'YES')then
+			capply_demean = 'yes'
+	else
+			capply_demean = 'no'
+	endif
+	if(capply_filter .EQ. 'yes' .OR. capply_filter .EQ. 'YES')then
+			capply_filter = 'yes'
+	else
+			capply_filter = 'no'
+	endif
+	if(capply_vel2accel .EQ. 'yes' .OR. capply_vel2accel .EQ. 'YES')then
+			capply_vel2accel = 'yes'
+	else
+			capply_vel2accel = 'no'
+	endif
+
+	if(cin_units .EQ. 'meterpersec' .OR. cin_units .EQ. 'METERPERSEC')then
+			cin_units = 'meterpersec'
+	elseif(cin_units .EQ. 'cmpersec' .OR. cin_units .EQ. 'CMPERSEC')then
+			cin_units = 'cmpersec'
+	elseif(cin_units .EQ. 'meterpersec2' .OR. 
+     +					cin_units .EQ. 'METERPERSEC2')then
+			cin_units = 'meterpersec2'
+	elseif(cin_units .EQ. 'cmpersec2' .OR. cin_units .EQ. 'CMPERSEC2')then
+			cin_units = 'cmpersec2'
+	else
+		ierr = 1
+	endif
+
+	if(cout_choice .EQ. 'rd' .OR. cout_choice .EQ. 'RD')then
+			cout_choice = 'rd'
+	elseif(cout_choice .EQ. 'rv' .OR. cout_choice .EQ. 'RV')then
+			cout_choice = 'rv'
+	elseif(cout_choice .EQ. 'prv' .OR. cout_choice .EQ. 'PRV')then
+			cout_choice = 'prv'
+	elseif(cout_choice .EQ. 'aa' .OR. cout_choice .EQ. 'AA')then
+			cout_choice = 'aa'
+	elseif(cout_choice .EQ. 'paa' .OR. cout_choice .EQ. 'PAA')then
+			cout_choice = 'paa'
+	elseif(cout_choice .EQ. 'magrat' .OR. cout_choice .EQ. 'MAGRAT')then
+			cout_choice = 'magrat'
+	else
+		ierr = 1
+	endif
+
+	if(cout_units .EQ. 'meter' .OR. cout_units .EQ. 'METER')then
+			cout_units = 'meter'
+	elseif(cout_units .EQ. 'cm' .OR. cout_units .EQ. 'CM')then
+			cout_units = 'cm'
+	elseif(cout_units .EQ. 'meterpersec' .OR. 
+     +					cout_units .EQ. 'METERPERSEC')then
+			cout_units = 'meterpersec'
+	elseif(cout_units .EQ. 'cmpersec' .OR. cout_units .EQ. 'CMPERSEC')then
+			cout_units = 'cmpersec'
+	elseif(cout_units .EQ. 'meterpersec2' .OR. 
+     +					cout_units .EQ. 'METERPERSEC2')then
+			cout_units = 'meterpersec2'
+	elseif(cout_units .EQ. 'cmpersec2' .OR. cout_units .EQ. 'CMPERSEC2')then
+			cout_units = 'cmpersec2'
+	elseif(cout_units .EQ. 'unitsofg' .OR. cout_units .EQ. 'UNITSOFG')then
+			cout_units = 'unitsofg'
+	elseif(cout_units .EQ. 'percentg' .OR. cout_units .EQ. 'PERCENTG')then
+			cout_units = 'percentg'
+	else
+		ierr = 1
+	endif
+
+
+	if(cout_format .EQ. 'text' .OR. cout_format .EQ. 'TEXT')then
+			jout_format = 1
+	else
+			jout_format = 0
+	endif
+
+
+	if(ierr .EQ. 1)then
+		write(6,10)
+		write(6,20)
+		write(6,11)
+		write(6,12)
+		write(6,13)
+		write(6,14)
+		call exit(1)
+	endif
+10	format('#surfseis_rspectra in= out=',/,
+     +	'#           simulation_out_pointsX= simulation_out_pointsY=',/,
+     +	'#           simulation_out_timesamples= simulation_out_timeskip=',/,
+     +	'#           surfseis_rspectra_output_type= ',/,
+     +				'surfseis_rspectra_output_format=',/,
+     +	'#           surfseis_rspectra_galstog=',/,
+     +	'#           surfseis_rspectra_periodtype= ',
+     +				'surfseis_rspectra_period=',/,
+     +	'#           surfseis_rspectra_seismogram_units= ',/,
+     +	'#           surfseis_rspectra_output_units= ',/,
+     +	'#           surfseis_rspectra_apply_byteswap= ',/,
+     +	'#           surfseis_rspectra_apply_vel2accel= ',/,
+     +	'#           surfseis_rspectra_apply_demean=',/,
+     +	'#           surfseis_rspectra_apply_filter=',/,
+     +	'#           surfseis_rspectra_apply_filter_lowHZ= ',/,
+     +	'#           surfseis_rspectra_apply_filter_highHZ= ')
+20	format(
+     +	'#           surfseis_rspectra_numdampcoeffs=',/,
+     +	'#           surfseis_rspectra_dampcoeffs1=',/,
+     +	'#           surfseis_rspectra_dampcoeffs2=',/,
+     +	'#               :        :        :      :',/,
+     +	'#           surfseis_rspectra_dampcoeffs10= ',/,
+     +	'# surfseis_rspectra_out_pointsXstart= ',
+     +					'surfseis_rspectra_out_pointsXend=',/,
+     +	'# surfseis_rspectra_out_pointsYstart= ',
+     +	 				'surfseis_rspectra_out_pointsYend=',/,
+     +	'# surfseis_rspectra_out_pointsXdel= ',
+     +					'surfseis_rspectra_out_pointsYdel=')
+
+11	format('#',/,
+     +	'# in=                                       ',
+     +				'input Surf-seis file      [none]',/,
+     +	'# out=                                      ',
+     +				'output spectral file      [none]',/,
+     +	'# simulation_out_pointsX=                   ',
+     +				'# grid points in X        [none]',/,
+     +	'# simulation_out_pointsY=                   ',
+     +				'# grid points in Y        [none]',/,
+     +	'# simulation_out_timesamples=               ',
+     +				'# time points             [none]',/,
+     +	'# simulation_out_timeskip=                  ',
+     +				'sample rate (sec)         [none]')
+12	format(
+     +	'# surfseis_rspectra_output_type=     output:',
+     +				' rd,rv,prv,aa,paa,magrat    [aa]',/,
+     +	'# surfseis_rspectra_output_format=          ',
+     +				'binary or text          [binary]',/,
+     +	'# surfseis_rspectra_galstog=                ',
+     +				'gals to g (1/980)     [.0010204]',/,
+     +	'# surfseis_rspectra_periodtype=             ',
+     +				'SCEC or TI                [SCEC]',/,
+     +	'# surfseis_rspectra_period=                 ',
+     +				'output period (sec)or "all" [2.]',/,
+     +	'# surfseis_rspectra_seismogram_units=       ',
+     +				'                   [meterpersec]',/,
+     +	'#                                           ',
+     +				'vel:   "meterpersec"  "cmpersec"',/,
+     +	'#                                           ',
+     +				'accel: "meterpersec2" "cmpersec2"',/,
+     +	'# surfseis_rspectra_output_units=           ',
+     +				'                      [unitsofg]',/,
+     +	'#',43x, 		'rd:    "meter"        "cm"',/,
+     +	'#',43x, 		'rv,prv:"meterpersec"  "cmpersec"',/,
+     +	'#',43x, 		'aa,paa:"meterpersec2" "cmpersec2"',/,
+     +	'#',43x, 		'aa,paa:"unitsofg"     "percentg"',/,
+     +	'# surfseis_rspectra_apply_byteswap=         ',
+     +				'apply: "yes" or "no"        [no]',/,
+     +	'# surfseis_rspectra_apply_vel2accel=        ',
+     +				'apply: "yes" or "no"       [yes]',/,
+     +	'# surfseis_rspectra_apply_demean=           ',
+     +				'apply: "yes" or "no"       [yes]')
+13	format(
+     +	'# surfseis_rspectra_apply_filter=           ',
+     +				'apply: "yes" or "no"       [yes]',/,
+     +	'# surfseis_rspectra_apply_filter_lowHZ=     ',
+     +				'low HZ cutoff               [0.]',/,
+     +	'# surfseis_rspectra_apply_filter_highHZ=    ',
+     +				'high HZ cutoff         [Nyquist]',/,
+     +	'# surfseis_rspectra_numdampcoeffs=          ',
+     +				'#damping coeffs              [1]',/,
+     +	'# surfseis_rspectra_dampcoeffs1=            ',
+     +				'damping value #1          [0.05]',/,
+     +	'# surfseis_rspectra_dampcoeffs2=            ',
+     +				'damping value #2          [none]',/,
+     +	'#                                           ',
+     +				'               :',/,
+     +	'# surfseis_rspectra_dampcoeffs10=           ',
+     +				'damping value #10         [none]')
+
+14	format('#      More optional: output decimation in surface nodes:',/,
+     +	'# surfseis_rspectra_out_pointsXstart=       ',
+     +				'first seismogram in X        [1]',/,
+     +	'# surfseis_rspectra_out_pointsXend=         ',
+     +				'last  seismogram in X    [all X]',/,
+     +	'# surfseis_rspectra_out_pointsYstart=       ',
+     +				'first seismogram in Y        [1]',/,
+     +	'# surfseis_rspectra_out_pointsYend=         ',
+     +				'last  seismogram in Y    [all Y]',/,
+     +	'# surfseis_rspectra_out_pointsXdel=         ',
+     +				'increment in X               [1]',/,
+     +	'# surfseis_rspectra_out_pointsYdel=         ',
+     +				'increment in Y               [1]')
+
+
+	if(kout_units .LE. 0)then
+		if(cout_choice .EQ. 'rd')then
+			cout_units = 'meter'
+		elseif(cout_choice .EQ. 'rv')then
+			cout_units = 'meterpersec'
+		elseif(cout_choice .EQ. 'prv')then
+			cout_units = 'meterpersec'
+		elseif(cout_choice .EQ. 'aa')then
+			cout_units = 'unitsofg'
+		elseif(cout_choice .EQ. 'paa')then
+			cout_units = 'unitsofg'
+		elseif(cout_choice .EQ. 'magrat')then
+			cout_units = 'unitsofg'
+		else
+			cout_units = 'unitsofg'
+		endif
+	endif
+
+
+
+c determine output node totals
+	koutnx = 0
+	do i = koutx0,koutx1,koutdx
+		koutnx = koutnx + 1
+	enddo
+
+	koutny = 0
+	do i = kouty0,kouty1,koutdy
+		koutny = koutny + 1
+	enddo
+
+
+	return
+	end
+
+
+c==================================================================
+	subroutine runtime_doc(nx,ny,npts,dt, fac,ndamp,damp,maxdamp,
+     +		cperiod, capply_demean,capply_filter,capply_vel2accel,
+     +		filter_lowHZ,filter_highHZ,period_out,capply_byteswap,
+     +		cout_choice,cin_units,cout_units,jout_format,jout_numperiods)
+	implicit none
+	character*120	cperiod, cout_choice,cin_units,cout_units
+	character*120	capply_demean,capply_filter,capply_vel2accel
+	character*120	capply_byteswap
+	integer		nx,ny,npts,ndamp,maxdamp
+	integer		jout_format,jout_numperiods
+	real		dt,fac,damp(maxdamp),filter_lowHZ,filter_highHZ
+	real		period_out
+
+	integer		i
+	character*20	cline
+	character*48	cout_option
+
+	common	/knodes/koutnx,koutx0,koutx1,koutdx, koutx,
+     +			koutny,kouty0,kouty1,koutdy, kouty
+	integer		koutnx,koutx0,koutx1,koutdx, koutx,
+     +			koutny,kouty0,kouty1,koutdy, kouty
+
+	cline = '#surfseis_rspectra> '
+
+	write(6,100)cline,ny
+	write(6,110)cline,nx
+	write(6,120)cline,npts
+	write(6,130)cline,dt
+
+	write(6,150)cline,koutx0,koutx1,koutdx
+	write(6,160)cline,kouty0,kouty1,koutdy
+	write(6,170)cline,koutnx,koutny
+
+	if(cout_choice .EQ. 'rd')then
+		cout_option = 'real component of displacement spectrum.'
+	elseif(cout_choice .EQ. 'rv')then
+		cout_option = 'real component of velocity spectrum.'
+	elseif(cout_choice .EQ. 'prv')then
+		cout_option = 'imaginary component of velocity spectrum.'
+	elseif(cout_choice .EQ. 'aa')then
+		cout_option = 'real component of acceleration spectrum.'
+	elseif(cout_choice .EQ. 'paa')then
+		cout_option = 'imaginary component of acceleration spectrum.'
+	elseif(cout_choice .EQ. 'magrat')then
+		cout_option = 'real comp. of accel. normalized to max accel.'
+	endif
+	write(6,200)cline,cout_option
+	write(6,210)cline,cout_units
+	if(jout_format .EQ. 0 .AND. jout_numperiods .EQ. 1)write(6,220)cline
+	if(jout_format .EQ. 0 .AND. jout_numperiods .EQ. 0)write(6,230)cline
+	if(jout_format .EQ. 1 .AND. jout_numperiods .EQ. 1)write(6,240)cline
+	if(jout_format .EQ. 1 .AND. jout_numperiods .EQ. 0)write(6,250)cline
+
+	write(6,300)cline,cperiod
+	if(jout_numperiods .EQ. 1)write(6,310)cline,period_out
+	if(jout_numperiods .EQ. 0)write(6,320)cline
+
+	write(6,390)cline,cin_units
+	if(capply_byteswap .EQ. 'yes')write(6,395)cline
+	if(capply_byteswap .NE. 'yes')write(6,396)cline
+	if(capply_demean .EQ. 'yes')write(6,400)cline
+	if(capply_demean .NE. 'yes')write(6,410)cline
+	if(capply_vel2accel .EQ. 'yes')write(6,420)cline
+	if(capply_vel2accel .NE. 'yes')write(6,430)cline
+	if(capply_filter .NE. 'yes')write(6,440)cline
+	if(capply_filter .EQ. 'yes')then
+		write(6,450)cline
+		write(6,460)cline,filter_lowHZ
+		write(6,470)cline,filter_highHZ
+	endif
+
+	write(6,500)cline,fac
+	write(6,600)cline,ndamp
+	do i=1,ndamp
+		write(6,610)cline,i,damp(i)
+	enddo
+
+
+100	format(a20,' outer dimension of #seismograms is',i7)
+110	format(a20,' inner dimension of #seismograms is',i7)
+120	format(a20,' #time samples per seismogram    is',i7)
+130	format(a20,' time sampling interval (sec)    is',f7.4)
+
+150	format(a20,' Seismograms to be used in X: ',i6,' to',i6,'; del:',i6)
+160	format(a20,' Seismograms to be used in Y: ',i6,' to',i6,'; del:',i6)
+170	format(a20,' Output #Seismograms in X, Y: ',i6,',  ',i6)
+
+200	format(a20,' Output will be ',a48)
+210	format(a20,' Output units:  ',a48)
+220	format(a20,' Output format: ','binary file of one period')
+230	format(a20,' Output format: ','binary file of all periods')
+240	format(a20,' Output format: ','text file of one period')
+250	format(a20,' Output format: ','text file of all periods')
+
+300	format(a20,' Period lookup table (TI or SCEC) is ',a8)
+310	format(a20,' Requested period is ',f10.5,' sec.')
+320	format(a20,' Requested period is table of all periods.')
+
+390	format(a20,' Incoming seismograms have units specified as ',a16)
+395	format(a20,' Preprocessing 0) apply seismogram byteswap: YES') 
+396	format(a20,' Preprocessing 0) apply seismogram byteswap: NO') 
+400	format(a20,' Preprocessing 1) apply seismogram DEMEAN: YES') 
+410	format(a20,' Preprocessing 1) apply seismogram DEMEAN: NO') 
+420	format(a20,' Preprocessing 2) apply seismogram vel->accel: YES') 
+430	format(a20,' Preprocessing 2) apply seismogram vel->accel: NO') 
+440	format(a20,' Preprocessing 3) apply seismogram filter: NO') 
+450	format(a20,' Preprocessing 3) apply seismogram filter: YES') 
+460	format(a20,' Preprocessing 3) filter low  frequency (Hz):',f8.4)
+470	format(a20,' Preprocessing 3) filter high frequency (Hz):',f8.4)
+
+500	format(a20,' Factor to convert gals to g:',f10.7)
+600	format(a20,' Number of user-requested damping coefficients:',i5)
+610	format(a20,'        Damping value #',i2,' is',f10.7)
+
+
+	return
+	end
+
+c==================================================================
+	subroutine check_units_vel2accel(cunits,cvel2accel)
+	implicit none
+	character*120	cunits,cvel2accel
+	integer		ierr
+
+	ierr = 0
+
+	if    (cunits .EQ. 'meterpersec'  .AND. cvel2accel .EQ. 'yes')then
+			ierr = 0
+	elseif(cunits .EQ. 'cmpersec'     .AND. cvel2accel .EQ. 'yes')then
+			ierr = 0
+	elseif(cunits .EQ. 'meterpersec2' .AND. cvel2accel .EQ. 'no')then
+			ierr = 0
+	elseif(cunits .EQ. 'cmpersec2'    .AND. cvel2accel .EQ. 'no')then
+			ierr = 0
+
+	elseif(cunits .EQ. 'meterpersec'  .AND. cvel2accel .EQ. 'no')then
+			ierr = 1
+	elseif(cunits .EQ. 'cmpersec'     .AND. cvel2accel .EQ. 'no')then
+			ierr = 1
+	elseif(cunits .EQ. 'meterpersec2' .AND. cvel2accel .EQ. 'yes')then
+			ierr = 2
+	elseif(cunits .EQ. 'cmpersec2'    .AND. cvel2accel .EQ. 'yes')then
+			ierr = 2
+	endif
+
+	if(ierr .EQ. 1)then
+		write(6,100)
+		cvel2accel = 'yes'
+	elseif(ierr .EQ. 2)then
+		write(6,100)
+		cvel2accel = 'no'
+	endif
+
+100	format('#surfseis_rspectra> Specified units are VELOCITY but ',
+     +						'vel->accel NOT requested;',/,
+     +	'#surfseis_rspectra>    vel->accel WILL BE performed (override).')
+
+200	format('#surfseis_rspectra> Specified units are ACCELERATION but ',
+     +						'vel->accel REQUESTED;',/,
+     +	'#surfseis_rspectra>    vel->accel WILL NOT be performed (override).')
+
+	return
+	end
+c==================================================================
+	subroutine open_files(ifile,ofile,npts,koutnx,jout_format,
+     +						jout_numperiods,nt,ierr)
+	implicit none
+	character*120	ifile,ofile
+	integer		npts,koutnx,jout_format,jout_numperiods,ierr,nt
+
+	common		/F90_REC_COUNTING/REC_COUNT
+	integer				  REC_COUNT
+c value of REC_COUNT defined at top of main.
+
+c input file
+	open(21,file=ifile,err=900,access='direct',form='unformatted',
+     +			status='old', recl=REC_COUNT*npts)
+
+
+c output file
+c   binary - one period (koutnx X koutny)
+	if(jout_format .EQ. 0 .AND. jout_numperiods .EQ. 1)then
+		open(22,file=ofile,err=910,access='direct',form='unformatted',
+     +			status='replace', recl=REC_COUNT*koutnx)
+
+c   binary all periods (nt X koutnx X koutny)
+	elseif(jout_format .EQ. 0 .AND. jout_numperiods .EQ. 0)then
+		open(22,file=ofile,err=910,access='direct',form='unformatted',
+     +			status='replace', recl=REC_COUNT*nt)
+
+	elseif(jout_format .EQ. 1)then
+		open(22,file=ofile,err=910)
+
+	endif
+
+
+	return
+
+900	ierr=1
+	return
+
+910	ierr=2
+	return
+	end
+
+c==================================================================
+	subroutine get_periodout(t,nt,jout_numperiods,period_out,jperiod_out,
+     +							jperiod0,jperiod1)
+	implicit none
+	integer	nt,jout_numperiods,jperiod_out, jperiod0,jperiod1
+	real	t(nt),period_out,	del_t,del_j,ratio
+
+	integer	i
+
+	jperiod_out = 0
+
+	if(jout_numperiods .EQ. 0)then
+		jperiod0 = 1
+		jperiod1 = nt
+
+	elseif(jout_numperiods .EQ. 1)then
+c first check if desired period is exactly on a defined value
+	do i=1,nt
+		if(period_out .EQ. t(i))then
+			jperiod_out = i
+			goto 100
+		endif
+	enddo
+
+c if here, desired period is not exactly on a defined value. 
+	if (period_out .GT. t(1))then
+		jperiod_out = 1
+		goto 100
+	elseif(period_out .LT. t(nt))then
+		jperiod_out = nt
+		goto 100
+	else
+		do i=1,nt-1
+		if(period_out .LT. t(i) .AND. period_out .GT. t(i+1))then
+			del_t = t(i) - t(i+1)
+			del_j = period_out - t(i+1)
+			ratio = del_j / del_t
+			if(ratio .GE. 0.50)then
+				jperiod_out = i
+				goto100
+			elseif(ratio .LT. 0.50) then
+				jperiod_out = i+1
+				goto100
+			endif
+		endif
+		enddo
+
+	endif
+
+100	continue
+		jperiod0 = jperiod_out
+		jperiod1 = jperiod_out
+
+	write(6,200)jperiod_out,t(jperiod_out)
+200	format(
+     +	'#surfseis_rspectra> Actual output period is index ',i3,
+     +				'; period (sec)',f10.5)
+
+	endif
+	return
+	end
+
+c==================================================================
+	subroutine seismogram_byteswap(a,npts)
+	implicit none
+
+	integer	npts,	i
+	real	a(npts)
+	real	xxin,xout
+	integer	kkin,kout
+	equivalence	(xxin,kkin),(xout,kout)
+
+	do i=1,npts
+		xxin = a(i)
+		call byte_swap4(kkin,kout)
+		a(i) = xout
+	enddo
+
+	return
+	end
+
+        subroutine byte_swap4(cin4,cout4)
+        character*1 cin4(4),cout4(4)
+
+        cout4(1) = cin4(4)
+        cout4(2) = cin4(3)
+        cout4(3) = cin4(2)
+        cout4(4) = cin4(1)
+
+        return
+        end
+
+c==================================================================
+	subroutine seismogram_mks2cgs(a,npts)
+	implicit none
+
+	integer	npts,	i
+	real	a(npts)
+
+	do i=1,npts
+		a(i) = a(i) * 100.
+	enddo
+
+	return
+	end
+
+c==================================================================
+	subroutine seismogram_demean(a,npts,work)
+	implicit none
+
+	integer	npts,	i
+	real	a(npts),work(npts),xmean,xnpts
+
+	do i=1,npts
+		work(i) = a(i)
+	enddo
+	do i=1,npts
+		a(i) = 0.
+	enddo
+
+	xmean = 0.	
+	xnpts = float(npts)
+	do i=1,npts
+		xmean = xmean + work(i) / xnpts
+	enddo
+
+	do i=1,npts
+		a(i) = work(i) - xmean
+	enddo
+
+	return
+	end
+
+c==================================================================
+	subroutine seismogram_vel2accel(a,npts,work,dt)
+	implicit none
+
+	integer	npts,	i
+	real	a(npts),work(npts),dt
+
+	do i=1,npts
+		work(i) = a(i)
+	enddo
+	do i=1,npts
+		a(i) = 0.
+	enddo
+
+	a(1) = 0.
+	do i=2,npts
+		a(i) = (work(i) - work(i-1)) / dt
+	enddo
+
+	return
+	end
+
+
+c==================================================================
+	subroutine seismogram_filter(a,npts,work,dt,
+     +					filter_lowHZ,filter_highHZ)
+	implicit none
+
+	integer	npts,	i
+	real	a(npts),work(npts),dt,filter_lowHZ,filter_highHZ
+	real	flow,fhigh
+	integer	nplo,nphi,phase
+
+	do i=1,npts
+		work(i) = 0.
+	enddo
+
+	flow  = filter_lowHZ
+	fhigh = filter_highHZ
+	nplo  = 6
+	nphi  = 6
+
+c =0 zero-phase, =1 minimum phase
+	phase = 1
+
+	call stanford_bandpass(a,work,npts,dt, flow, fhigh, nplo, nphi, phase)
+
+	do i=1,npts
+		a(i) = work(i)
+	enddo
+
+	return
+	end
+
+
+c==================================================================
+c note: stanford bandpass code requires incoming data and work
+c		arrays to have two extra samples (npts2 = npts+2)
+c
+	subroutine seismogram_stanford(a,npts,npts2,work,dt,
+     +					filter_lowHZ,filter_highHZ)
+	implicit none
+
+	integer	npts,npts2,	i
+	real	a(npts2),work(npts2),dt,filter_lowHZ,filter_highHZ
+	real	flow,fhigh
+	integer	nplo,nphi,phase
+
+
+	do i=1,npts2
+		work(i) = 0.
+	enddo
+
+	flow  = filter_lowHZ
+	fhigh = filter_highHZ
+	nplo  = 6
+	nphi  = 6
+
+c =0 zero-phase, =1 minimum phase
+	phase = 1
+
+	call stanford_bandpass(a,work,npts,dt, flow, fhigh, nplo, nphi, phase)
+
+c transfer only npts, not npts2:
+	do i=1,npts
+		a(i) = work(i)
+	enddo
+
+	return
+	end
+
+

Added: SwiftApps/Cybershake/app/post/SpectralAcceleration/setparm/setparm180.f
===================================================================
--- SwiftApps/Cybershake/app/post/SpectralAcceleration/setparm/setparm180.f	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/SpectralAcceleration/setparm/setparm180.f	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,2376 @@
+c Fortran command line/parameter file parameter retrieval system using
+c	name=value pairs.
+c 
+c Adapted from C-based "getpar()" routines by Caltech/Stanford.
+c
+c
+c Nomenclature for command-line argument retrieval:
+c "Token"	is "name=value" string (must have '=' delimiter) [185 char] 245
+c "name"	is string which will be searched by getpar()	 [ 64 char]  64
+c "value"	is string containing value of 'name'		 [120 char] 180
+c
+c Nomenclature for  "getpar("name","type",variable):
+c "name" 	is character string for searching		 [ 64 char]  64
+c "type"	is defined by C-based getpar:  d,f,s, dv, fv	 [  2 char]   2
+c  variable	is recipient of value (number or string)
+c----------------------
+c setparm_num 	= number of name=value tokens.
+c		= 0 set in setpar(); turns off all subsequent getpar() routines 
+c-----------------------------------------------------------------------
+c ORIGINAL PURE-FORTRAN GETPAR()
+c 27jul00 DAO	Initial implementation.
+c 30jul00 DAO	Further implementation and restructuring.  Concatenate
+c		getpar_copt.f routines.
+c 31jul00 DAO   Fix the termination of char string.
+c
+c 19aug03 DAO   g77 version: remove dynamic memory allocation and pointers.
+c			Hardwire dimensions.
+c 09oct03 DAO   g77 version: fix string termination from NULL to space.
+c		    Solaris allows text to be terminated with null
+c			within middle of declared char size (trailing chars
+c			either don't matter or are spaces).
+c		    Linux seems to not deal with the null, but wants the
+c			full pad using spaces. 
+c		    In this version all returned strings are padded to
+c			full incoming length. 
+c 02nov03 DAO	g77 version: replace char*1 definition of cname(64,500) and
+c			cvalue(120,500) with explicit character lengths of
+c			char*64 cname(500), char*120 cvalue(500).  The 
+c			string terminations using the char*1 approach does not
+c			work under Linux.  This use of hardcoded string lengths
+c			trickles into other subroutines.  
+c			   However, this approach may remove the NULL/SPACE issue
+c			which arises (see 09Oct03).  
+c		Hardcoded number of pairs allows for mem_address'ing
+c			of cname/cvalue arrays to be removed.
+c		    Returned value(s) still need a memory pointer because we 
+c			don't know its length ahead of time.
+c----------------------
+c GETPARMS()
+c 27nov03 DAO	modify generalized getpar() to be explicit getparmX()
+c			where X indicates type of requested parameter.
+c			E.g., getparmi(), getparmf(), getparms().
+c			Internal value passing is easier than for getpar().
+c----------------------
+c SETPARMS()
+c 04dec03 DAO	rename functions in order to separate from getpar().
+c			loadparm(),endparm(),
+c			setparmi(),  setparmf(),  setparmd(), setparms(),
+c			setparmiv(), setparmfv(), setparmdv().
+c		Make parameter file option functional.
+c 16dec03 DAO	Rename subsidiary subroutines in order to avoid any future
+c			naming conflicts by other programmers.
+c		Install front-to-back or back-to-front parameter searching
+c			(first mention or last mention).
+c 13jan04 DAO	Fix setparmd() retrieval whose integral and remainder
+c			components were getting truncated to 10 digits
+c			via overuse of setparm_ConstructNumber() (which
+c			was meant to retrieve 32-bit integers.  This
+c			required a parallel setparm_ConstructNumber8() which
+c			internally uses R*8.
+c
+c------------------------------------------------------------------------------
+c 28feb04 DAO	Make long_line version : 64+120 = 185 -> 64+180=245
+c		Increase number args from 500 to 1000
+c=============================================================================
+
+c------------------------------------------------------------------------------
+c loadparm() retrieves all command line arguments, parses each into name and 
+c	value strings, and stores for subsequent interpretation by setparm().
+c
+	subroutine loadparm(cdirection)
+	implicit none
+	character*8	cdirection
+
+c----------------------------
+c set GLOBALS down below right away.
+c	parameter (MAXCHAR_CTOKEN=245,MAXCHAR_CNAME=64,MAXCHAR_CVALUE=180)
+c	parameter (MAXARGS = 1000, M_CNAME=64, M_CVALUE=180)
+
+c global/common variables
+c  MAXCHAR_CTOKEN=245, MAXCHAR_CNAME=64, MAXCHAR_CVALUE=180
+	common /globals/setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+	integer*4	setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+
+	common /cnamevalue/ MAXARGS,M_CNAME,M_CVALUE,cname,cvalue
+	integer		MAXARGS,M_CNAME,M_CVALUE
+	character*64 	cname(1000)
+	character*180	cvalue(1000)
+
+	common /loadparm_dir/loadparm_direction
+	integer*4	loadparm_direction
+
+c internal working variables
+	
+	integer numargs,iargc,itoken
+	character*245	ctoken245
+
+c------------------------------------------------------
+c set GLOBALS immediately
+c	parameter (MAXCHAR_CTOKEN=245,MAXCHAR_CNAME=64,MAXCHAR_CVALUE=180)
+c	parameter (MAXARGS = 1000, M_CNAME=64, M_CVALUE=180)
+	MAXCHAR_CTOKEN=245
+	MAXCHAR_CNAME=64
+	MAXCHAR_CVALUE=180
+	MAXARGS = 1000
+	M_CNAME=MAXCHAR_CNAME
+	M_CVALUE=MAXCHAR_CVALUE
+	
+c------------------------------------------------------
+c get number of command line arguments (tokens)
+	numargs = iargc()
+
+	if(numargs .EQ. 0)then
+		setparm_num    = 0
+		return
+	endif
+
+c------------------------------------------------------
+c cname, cvalue working space: initialize by filling with spaces = ascii 32
+	call setparm_clear()
+
+c------------------------------------------------------
+c obtain setparm direction from loadparm passed argument
+	call loadparm_setdir(cdirection)
+
+c------------------------------------------------------
+c obtain arguments in ascending order
+
+	setparm_num = 0
+	do itoken = 1,numargs
+		call getarg(itoken,ctoken245)
+		call loadparm_parse(ctoken245)
+		call loadparm_parfile()
+	enddo
+
+c when here, now have parsed all valid tokens and stored in cname(),cvalue().
+
+
+	RETURN
+	end
+
+c------------------------------------------------------------------------------
+c endparm() terminates getparm().
+c   when dynamic memory allocation was used, endpar() released the memory.
+c   here, we do nothing since all dynamic mem alloc has been replaced with
+c   fixed-sized arrays.
+	subroutine endparm()
+
+	implicit none
+
+	return
+	end
+
+c---------------------------------------------------------------------
+	subroutine setparm_clear()
+	implicit none
+
+	common /cnamevalue/ MAXARGS,M_CNAME,M_CVALUE,cname,cvalue
+	integer		MAXARGS,M_CNAME,M_CVALUE
+	character*64 	cname(1000)
+	character*180	cvalue(1000)
+
+	character*64	a64
+	character*180	b180
+	character*1	a1(64),b1(180)
+	equivalence	(a1,a64),(b1,b180)
+	integer	j
+	
+	call setparm_clearstring(a1,M_CNAME)
+	call setparm_clearstring(b1,M_CVALUE)
+	
+	do j=1,MAXARGS
+		cname(j) = a64
+		cvalue(j) = b180
+	enddo
+		
+	return
+	end
+
+c-----------------------
+	subroutine setparm_clearstring(cstring,nlength)
+	implicit none
+	integer	    nlength
+	character*1 cstring(nlength)
+
+
+	character*1 cspace
+	integer	    i
+
+	cspace = char(32)
+
+	do i=1,nlength
+		cstring(i) = cspace
+	enddo
+
+	return
+	end
+
+
+c---------------------------------------------------------------------
+c Parse a command line token "name=value" by using the '=' as a delimiter
+c If '=' found, increment setparm_num and store name, value strings
+
+	subroutine loadparm_parse(ctoken245)
+	
+	implicit none
+
+	character*245 ctoken245
+
+c  MAXCHAR_CTOKEN=245, MAXCHAR_CNAME=64, MAXCHAR_CVALUE=180
+	common /globals/setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+	integer*4	setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+
+	common /cnamevalue/ MAXARGS,M_CNAME,M_CVALUE,cname,cvalue
+	integer		MAXARGS,M_CNAME,M_CVALUE
+	character*64 	cname(1000)
+	character*180	cvalue(1000)
+	
+	integer	length_token,idelim,i,j
+	character*1	ctoken(245)
+	character*245	c245
+	equivalence	(c245,ctoken)
+
+	character*64	a64
+	character*180	b180
+	character*1	a1(64),b1(180)
+	equivalence	(a64,a1),(b180,b1)
+
+c transfer incoming token
+	call setparm_clearstring(ctoken,MAXCHAR_CTOKEN)
+	c245 = ctoken245
+
+c get size of this token
+	call setparm_denull(ctoken,MAXCHAR_CTOKEN)
+	call setparm_strlen(ctoken,MAXCHAR_CTOKEN,length_token)
+	if(length_token .EQ. 0)return
+	
+c search for delimiter
+	do idelim=1,length_token
+		if(ctoken(idelim) .EQ. '=')goto100
+	enddo
+
+c if here, did not find '=' and so is not a valid getparm() token.
+c don't store anything; just return
+	return
+
+c-----------------
+c if here, found valid '=' delimiter
+100	continue
+
+c first check if x=y structure exists.
+	if(idelim .EQ. 1	   ) return
+	if(idelim .EQ. length_token) return
+
+c valid structure exists, now save
+	call setparm_clearstring(a1,MAXCHAR_CNAME)
+	call setparm_clearstring(b1,MAXCHAR_CVALUE)
+	setparm_num = setparm_num+1
+
+	j=idelim-1
+	if(j .GT. MAXCHAR_CNAME)j=MAXCHAR_CNAME
+	do i=1,j
+		a1(i) = ctoken(i)
+	enddo
+	
+	j = length_token - idelim
+	if(j .GT. MAXCHAR_CVALUE)j=MAXCHAR_CVALUE
+	do i=1,j
+		b1(i) = ctoken(idelim + i)
+	enddo
+
+	cname(setparm_num)  = a64
+	cvalue(setparm_num) = b180
+
+	RETURN
+	end
+
+
+	subroutine setparm_strlen(ctoken,MAXCHAR_CTOKEN,length_token)
+	
+	implicit none
+
+	integer	MAXCHAR_CTOKEN,length_token
+	character*1 ctoken(MAXCHAR_CTOKEN)
+	
+	character*1 ctrail
+	integer i
+
+c	ctrail = char(0)
+	ctrail = char(32)
+
+	do i=MAXCHAR_CTOKEN,1,-1
+		if(ctoken(i) .NE. ctrail)then
+			length_token = i
+			return
+		endif
+	enddo
+
+c if here, a blank string
+	length_token = 0
+
+	return
+	end
+
+
+c--------------------------------------------
+c identify first space or null, and clear remainder of array with NULLs.
+	subroutine setparm_despace(carray,nchars)
+
+	implicit none
+
+	integer	i,j,nchars
+	character*1 carray(nchars),cspace,cnull
+
+	cspace = char(32)
+	cnull  = char(0)
+
+	do i=1,nchars
+		if(carray(i) .EQ. cspace .OR. carray(i) .EQ. cnull)goto100
+	enddo
+	return
+
+100	do j=i,nchars
+		carray(j) = cnull
+	enddo
+	return
+
+	end
+
+	subroutine setparm_denull(carray,nchars)
+
+	implicit none
+
+	integer	i,j,nchars
+	character*1 carray(nchars),cspace,cnull
+
+	cspace = char(32)
+	cnull  = char(0)
+
+	do i=1,nchars
+		if(carray(i) .EQ. cspace .OR. carray(i) .EQ. cnull)goto100
+	enddo
+	return
+
+100	do j=i,nchars
+		carray(j) = cspace
+	enddo
+	return
+
+	end
+
+c------------------------------------------------------------------------------
+c------------------------------------------------------------------------------
+c setparm() scans tokens for valid match, then interprets token value into
+c	integer, float, or char string.
+c	setparm() returns #items in value string (0, 1, >1).
+c
+c allow up to 200 values per name (overkill as value length is 120 chars).
+c 28feb04     200 values per name (overkill as value length is 180 chars).
+c------------------------------------------------------------------------------
+c********************************************
+	integer function setparmi(c64,kreturn)
+	
+	implicit none
+
+	character*(*)	c64
+	integer		kreturn
+
+c global/common variables
+	common /globals/setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+	integer*4	setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+
+	common /cnamevalue/ MAXARGS,M_CNAME,M_CVALUE,cname,cvalue
+	integer		MAXARGS,M_CNAME,M_CVALUE
+	character*64 	cname(1000)
+	character*180	cvalue(1000)
+
+c for internal manipulation of incoming c64,ctype arguments
+	character*64 cstring64
+	character*1 cstring(64)
+	equivalence (cstring64,cstring)
+
+c internal variables for extracting value to return.
+c following has size of MAXCHAR_CVALUE
+	character*1 kvalue(180)
+	integer itoken,nvalues,jstatus
+	integer	jvalue
+
+c-------------------------
+c if no command line arguments to scan, immediately return	
+	if(setparm_num .EQ. 0)then
+		setparmi=0
+		return
+	endif
+
+c-------------------------
+c search command line tokens for this setparm("cstring", value) cstring
+	cstring64 = c64
+	call setparm_denull(cstring,MAXCHAR_CNAME)
+	
+	call setparm_whichComLineToken(cname,MAXCHAR_CNAME,setparm_num,
+     +							cstring,itoken)
+
+c if no token found, return without modifying returned value.  
+	if(itoken .EQ. -1)then
+		setparmi=0
+		return
+	endif
+
+c transfer ComLine Token text from cvalue() to kvalue()to work with 1-D string
+	call setparm_getComLineToken(cvalue,MAXCHAR_CVALUE,setparm_num,
+     +								itoken,kvalue)
+
+c-------------------------
+c setparm(integer)
+	call setparm_valueInteger(kvalue,MAXCHAR_CVALUE,jvalue,jstatus)
+     	if(jstatus .EQ. 1)then
+     		kreturn = jvalue
+     		nvalues=1
+     	else
+     		nvalues=0
+     	endif
+
+c return
+1000	continue
+	setparmi=nvalues
+
+	return
+	end
+
+
+c********************************************
+	integer function setparmf(c64,xreturn)
+	
+	implicit none
+
+	character*(*)	c64
+	real		xreturn
+
+c global/common variables
+	common /globals/setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+	integer*4	setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+
+	common /cnamevalue/ MAXARGS,M_CNAME,M_CVALUE,cname,cvalue
+	integer		MAXARGS,M_CNAME,M_CVALUE
+	character*64 	cname(1000)
+	character*180	cvalue(1000)
+
+c for internal manipulation of incoming c64,ctype arguments
+	character*64 cstring64
+	character*1 cstring(64)
+	equivalence (cstring64,cstring)
+
+c internal variables for extracting value to return.
+c following has size of MAXCHAR_CVALUE
+	character*1 kvalue(180)
+	integer itoken,nvalues,jstatus
+	real	xvalue
+
+c-------------------------
+c if no command line arguments to scan, immediately return	
+	if(setparm_num .EQ. 0)then
+		setparmf=0
+		return
+	endif
+
+c-------------------------
+c search command line tokens for this setparm("cstring", value) cstring
+	cstring64 = c64
+	call setparm_denull(cstring,MAXCHAR_CNAME)
+	
+	call setparm_whichComLineToken(cname,MAXCHAR_CNAME,setparm_num,
+     +							cstring,itoken)
+
+c if no token found, return without modifying returned value.  
+	if(itoken .EQ. -1)then
+		setparmf=0
+		return
+	endif
+
+c transfer ComLine Token text from cvalue() to kvalue()to work with 1-D string
+	call setparm_getComLineToken(cvalue,MAXCHAR_CVALUE,setparm_num,
+     +								itoken,kvalue)
+
+c-------------------------
+c setparm(floating point / real)
+	call setparm_valueFloat(kvalue,MAXCHAR_CVALUE,xvalue,jstatus)
+	if(jstatus .EQ. 1)then
+		xreturn = xvalue
+		nvalues=1
+	else
+		nvalues=0
+	endif
+
+c return
+1000	continue
+	setparmf=nvalues
+
+	return
+	end
+
+
+c********************************************
+	integer function setparmd(c64,dreturn)
+	
+	implicit none
+
+	character*(*)	c64
+	real*8		dreturn
+
+c global/common variables
+	common /globals/setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+	integer*4	setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+
+	common /cnamevalue/ MAXARGS,M_CNAME,M_CVALUE,cname,cvalue
+	integer		MAXARGS,M_CNAME,M_CVALUE
+	character*64 	cname(1000)
+	character*180	cvalue(1000)
+
+c for internal manipulation of incoming c64,ctype arguments
+	character*64 cstring64
+	character*1 cstring(64)
+	equivalence (cstring64,cstring)
+
+c internal variables for extracting value to return.
+c following has size of MAXCHAR_CVALUE
+	character*1 kvalue(180)
+	integer itoken,nvalues,jstatus
+	real*8	dvalue
+
+c-------------------------
+c if no command line arguments to scan, immediately return	
+	if(setparm_num .EQ. 0)then
+		setparmd=0
+		return
+	endif
+
+c-------------------------
+c search command line tokens for this setparm("cstring", value) cstring
+	cstring64 = c64
+	call setparm_denull(cstring,MAXCHAR_CNAME)
+	
+	call setparm_whichComLineToken(cname,MAXCHAR_CNAME,setparm_num,
+     +							cstring,itoken)
+
+c if no token found, return without modifying returned value.  
+	if(itoken .EQ. -1)then
+		setparmd=0
+		return
+	endif
+
+c transfer ComLine Token text from cvalue() to kvalue()to work with 1-D string
+	call setparm_getComLineToken(cvalue,MAXCHAR_CVALUE,setparm_num,
+     +								itoken,kvalue)
+
+c-------------------------
+c setparm(double float)
+	call setparm_valueDoubleFloat(kvalue,MAXCHAR_CVALUE,dvalue,jstatus)
+	if(jstatus .EQ. 1)then
+		dreturn = dvalue
+		nvalues=1
+	else
+		nvalues=0
+	endif
+
+c return
+1000	continue
+	setparmd=nvalues
+
+	return
+	end
+
+
+
+c********************************************
+	integer function setparmiv(c64,kreturn,narray)
+	
+	implicit none
+
+	integer		narray, kreturn(narray)
+	character*(*)	c64
+
+c global/common variables
+	common /globals/setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+	integer*4	setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+
+	common /cnamevalue/ MAXARGS,M_CNAME,M_CVALUE,cname,cvalue
+	integer		MAXARGS,M_CNAME,M_CVALUE
+	character*64 	cname(1000)
+	character*180	cvalue(1000)
+
+c for internal manipulation of incoming c64,ctype arguments
+	character*64 cstring64
+	character*1 cstring(64)
+	equivalence (cstring64,cstring)
+
+c internal variables for extracting value to return.
+c following has size of MAXCHAR_CVALUE
+	character*1 kvalue(180)
+	integer itoken,nvalues,jstatus
+	integer	MAX_ARRAY
+	PARAMETER (MAX_ARRAY = 200)
+	integer	numDelimits,nBytesPerWord,	i,ntransfer
+	integer*4 ivector4(200)
+
+c-------------------------
+c if no command line arguments to scan, immediately return	
+	if(setparm_num .EQ. 0)then
+		setparmiv=0
+		return
+	endif
+
+c-------------------------
+c search command line tokens for this setparm("cstring", value) cstring
+	cstring64 = c64
+	call setparm_denull(cstring,MAXCHAR_CNAME)
+	
+	call setparm_whichComLineToken(cname,MAXCHAR_CNAME,setparm_num,
+     +							cstring,itoken)
+
+c if no token found, return without modifying returned value.  
+	if(itoken .EQ. -1)then
+		setparmiv=0
+		return
+	endif
+
+c transfer ComLine Token text from cvalue() to kvalue()to work with 1-D string
+	call setparm_getComLineToken(cvalue,MAXCHAR_CVALUE,setparm_num,
+     +								itoken,kvalue)
+
+c-------------------------
+c setparm(vector of integers)
+        call setparm_NumDelimits(kvalue,MAXCHAR_CVALUE,numDelimits)
+	if(numDelimits .EQ. 0)then
+		nvalues=0
+		goto1000
+	endif
+	nBytesPerWord = 4
+	call setparm_valueVinteger(kvalue,MAXCHAR_CVALUE,ivector4,numDelimits,
+     +								jstatus)
+	if(jstatus .EQ. 1)then
+		ntransfer=numDelimits
+		if(ntransfer .GT. narray)ntransfer=narray
+		do i=1,ntransfer
+			kreturn(i) = ivector4(i)
+		enddo
+		nvalues = ntransfer
+	else
+		nvalues=0
+	endif
+
+c return
+1000	continue
+	setparmiv=nvalues
+
+	return
+	end
+
+
+
+c********************************************
+	integer function setparmfv(c64,xreturn,narray)
+	
+	implicit none
+
+	character*(*)	c64
+	integer		narray
+	real		xreturn(narray)
+
+c global/common variables
+	common /globals/setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+	integer*4	setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+
+	common /cnamevalue/ MAXARGS,M_CNAME,M_CVALUE,cname,cvalue
+	integer		MAXARGS,M_CNAME,M_CVALUE
+	character*64 	cname(1000)
+	character*180	cvalue(1000)
+
+c for internal manipulation of incoming c64,ctype arguments
+	character*64 cstring64
+	character*1 cstring(64)
+	equivalence (cstring64,cstring)
+
+c internal variables for extracting value to return.
+c following has size of MAXCHAR_CVALUE
+	character*1 kvalue(180)
+	integer itoken,nvalues,jstatus
+	integer	MAX_ARRAY
+	PARAMETER (MAX_ARRAY = 200)
+	integer	numDelimits,nBytesPerWord,	i,ntransfer
+	real	vector4(200)
+
+c-------------------------
+c if no command line arguments to scan, immediately return	
+	if(setparm_num .EQ. 0)then
+		setparmfv=0
+		return
+	endif
+
+c-------------------------
+c search command line tokens for this setparm("cstring", value) cstring
+	cstring64 = c64
+	call setparm_denull(cstring,MAXCHAR_CNAME)
+	
+	call setparm_whichComLineToken(cname,MAXCHAR_CNAME,setparm_num,
+     +							cstring,itoken)
+
+c if no token found, return without modifying returned value.  
+	if(itoken .EQ. -1)then
+		setparmfv=0
+		return
+	endif
+
+c transfer ComLine Token text from cvalue() to kvalue()to work with 1-D string
+	call setparm_getComLineToken(cvalue,MAXCHAR_CVALUE,setparm_num,
+     +								itoken,kvalue)
+
+c-------------------------
+c setparm(vector of floating point/reals)
+        call setparm_NumDelimits(kvalue,MAXCHAR_CVALUE,numDelimits)
+	if(numDelimits .EQ. 0)then
+		nvalues=0
+		goto1000
+	endif
+	nBytesPerWord = 4
+	call setparm_valueVfloat(kvalue,MAXCHAR_CVALUE,vector4,numDelimits,
+     +								jstatus)
+	if(jstatus .EQ. 1)then
+		ntransfer=numDelimits
+		if(ntransfer .GT. narray)ntransfer=narray
+		do i=1,ntransfer
+			xreturn(i) = vector4(i)
+		enddo
+		nvalues = ntransfer
+	else
+		nvalues=0
+	endif
+
+c return
+1000	continue
+	setparmfv=nvalues
+
+	return
+	end
+
+
+
+c********************************************
+	integer function setparmdv(c64,xreturn,narray)
+	
+	implicit none
+
+	character*(*)	c64
+	integer		narray
+	real*8		xreturn(narray)
+
+c global/common variables
+	common /globals/setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+	integer*4	setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+
+	common /cnamevalue/ MAXARGS,M_CNAME,M_CVALUE,cname,cvalue
+	integer		MAXARGS,M_CNAME,M_CVALUE
+	character*64 	cname(1000)
+	character*180	cvalue(1000)
+
+c for internal manipulation of incoming c64,ctype arguments
+	character*64 cstring64
+	character*1 cstring(64)
+	equivalence (cstring64,cstring)
+
+c internal variables for extracting value to return.
+c following has size of MAXCHAR_CVALUE
+	character*1 kvalue(180)
+	integer itoken,nvalues,jstatus
+	integer	MAX_ARRAY
+	PARAMETER (MAX_ARRAY = 200)
+	integer	numDelimits,nBytesPerWord,	i,ntransfer
+	real*8	vector8(200)
+
+c-------------------------
+c if no command line arguments to scan, immediately return	
+	if(setparm_num .EQ. 0)then
+		setparmdv=0
+		return
+	endif
+
+c-------------------------
+c search command line tokens for this setparm("cstring", value) cstring
+	cstring64 = c64
+	call setparm_denull(cstring,MAXCHAR_CNAME)
+	
+	call setparm_whichComLineToken(cname,MAXCHAR_CNAME,setparm_num,
+     +							cstring,itoken)
+
+c if no token found, return without modifying returned value.  
+	if(itoken .EQ. -1)then
+		setparmdv=0
+		return
+	endif
+
+c transfer ComLine Token text from cvalue() to kvalue()to work with 1-D string
+	call setparm_getComLineToken(cvalue,MAXCHAR_CVALUE,setparm_num,
+     +								itoken,kvalue)
+
+c-------------------------
+c setparm(vector of double floats)
+        call setparm_NumDelimits(kvalue,MAXCHAR_CVALUE,numDelimits)
+	if(numDelimits .EQ. 0)then
+		nvalues=0
+		goto1000
+	endif
+	nBytesPerWord = 8
+	call setparm_valueVdoublefloat(kvalue,MAXCHAR_CVALUE,vector8,
+     +							numDelimits,jstatus)
+	if(jstatus .EQ. 1)then
+		ntransfer=numDelimits
+		if(ntransfer .GT. narray)ntransfer=narray
+		do i=1,ntransfer
+			xreturn(i) = vector8(i)
+		enddo
+		nvalues = ntransfer
+	else
+		nvalues=0
+	endif
+
+c return
+1000	continue
+	setparmdv=nvalues
+
+	return
+	end
+
+
+
+c********************************************
+	integer function setparms(c64,creturn_ptr)
+	
+	implicit none
+
+c	character*64	c64
+	character*(*)	c64
+	character*(*) creturn_ptr
+
+c global/common variables
+	common /globals/setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+	integer*4	setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+
+	common /cnamevalue/ MAXARGS,M_CNAME,M_CVALUE,cname,cvalue
+	integer		MAXARGS,M_CNAME,M_CVALUE
+	character*64 	cname(1000)
+	character*180	cvalue(1000)
+
+c for internal manipulation of incoming c64,ctype arguments
+	character*64 cstring64
+	character*1 cstring(64)
+	equivalence (cstring64,cstring)
+
+c internal variables for extracting value to return.
+c following has size of MAXCHAR_CVALUE
+	character*1 kvalue(180)
+	character*180 k180
+	integer itoken,nvalues,jstatus, MAX_LEN
+
+c-------------------------
+c if no command line arguments to scan, immediately return	
+	if(setparm_num .EQ. 0)then
+		setparms=0
+		return
+	endif
+
+c-------------------------
+c search command line tokens for this setparm("cstring", value) cstring
+	cstring64 = c64
+	call setparm_denull(cstring,MAXCHAR_CNAME)
+	
+	call setparm_whichComLineToken(cname,MAXCHAR_CNAME,setparm_num,
+     +							cstring,itoken)
+
+c if no token found, return without modifying returned value.  
+	if(itoken .EQ. -1)then
+		setparms=0
+		return
+	endif
+
+c transfer ComLine Token text from cvalue() to kvalue()to work with 1-D string
+c	call setparm_getComLineToken(cvalue,MAXCHAR_CVALUE,setparm_num,
+c     +								itoken,kvalue)
+	k180 = cvalue(itoken)
+
+c-------------------------
+c setparm(character string)
+	call setparm_valueString(kvalue,MAXCHAR_CVALUE,jstatus)
+	if(jstatus .EQ. 1)then
+c		call setreturn_string(kvalue,MAXCHAR_CVALUE,k180)
+		MAX_LEN = LEN(creturn_ptr)
+		if(MAX_LEN .LE. MAXCHAR_CVALUE)then
+			creturn_ptr=k180(1:MAX_LEN)
+		else
+			creturn_ptr=k180(1:MAXCHAR_CVALUE)
+		endif
+		nvalues=1
+	else
+		nvalues=0
+	endif
+
+c return
+1000	continue
+	setparms=nvalues
+
+	return
+	end
+
+c	subroutine setreturn_string(kvalue,MAXCHAR_CVALUE,k180)
+c	implicit none
+c	integer	    MAXCHAR_CVALUE
+c	character*1 kvalue(MAXCHAR_CVALUE),  	c1(180)
+c	character*180 k180,			c180
+c	integer 	i
+c	equivalence (c180,c1)
+c
+c	do i=1,180
+c		c1(i) = kvalue(i)
+c	enddo
+c
+c	k180 = c180
+c
+c	return
+c	end
+
+
+
+c------------------------------------------------------------------------------
+c identify which command line token belongs to this getpar(cstring) call.
+c
+	subroutine setparm_whichComLineToken(cname,MAXCHAR_CNAME,numargs,
+     +							cstring,itoken)
+	
+	implicit none
+
+	integer	MAXCHAR_CNAME,numargs,itoken
+	character*64 cname(numargs), c64
+	character*1 cstring(64), c1(64)
+	equivalence (c64,c1)
+
+	integer  i,j
+	integer	 istart,iend,idir
+
+	common /loadparm_dir/loadparm_direction
+	integer*4	loadparm_direction
+
+	istart = 1
+	iend   = numargs
+	idir   = 1
+	if(loadparm_direction .EQ. -1)then
+		istart = numargs
+		iend   = 1
+		idir   = -1
+	endif
+
+	itoken = -1
+	
+	do j=istart,iend,idir
+		c64 = cname(j)
+		do i=1,MAXCHAR_CNAME
+			if(cstring(i) .NE. c1(i))goto100
+		enddo
+c if here, found a match
+		goto 200
+
+c if here, keep looking
+100		continue
+	enddo
+
+c if here, no match; return with itoken = -1
+	return
+
+c if here, found match and return valid itoken
+200	continue
+	itoken = j
+	
+	return
+	end
+
+
+c transfer ComLine Token text from char*180 cvalue(setparm_num) to 
+c    kvalue() in order to work within 1D character array.
+	subroutine setparm_getComLineToken(cvalue,MAXCHAR_CVALUE,numargs,
+     +								itoken,kvalue)
+
+	implicit none
+
+	integer	MAXCHAR_CVALUE,numargs,itoken
+	character*180 cvalue(numargs), k180
+	character*1 kvalue(180),       k1(180)
+	equivalence (k180,k1)
+	character*1 cspace,cnull
+	integer i
+
+	cspace = char(32)
+	cnull  = char(0)
+
+c clear returned string array
+	do i=1,MAXCHAR_CVALUE
+		kvalue(i) = cspace
+	enddo
+
+c transfer this token's =value string
+	k180 = cvalue(itoken)
+	do i=1,MAXCHAR_CVALUE
+		kvalue(i) = k1(i)
+	enddo
+
+	return
+	end
+
+c----------------
+c Get number of delimited values that should exist within character
+c   string VALUE() based on number of delimiting characters ','.
+c Incoming:
+c     kvalue(MAXCHAR_CVALUE)	input text string
+c Outgoing:
+c     numvalues 		number of values (#delimiters + 1)
+c
+	subroutine setparm_NumDelimits(kvalue,MAXCHAR_CVALUE,numvalues)
+
+	implicit none
+
+	integer	MAXCHAR_CVALUE,numvalues
+	character*1 kvalue(MAXCHAR_CVALUE)
+
+	integer i
+
+	numvalues = 0
+
+	do i=1,MAXCHAR_CVALUE
+		if(kvalue(i) .EQ. ',')numvalues = numvalues + 1
+	enddo
+
+	numvalues = numvalues + 1
+
+	return
+	end
+
+c----------------
+c Get location of delimiter for ivalueTH value within cvalue() string.
+c Incoming:
+c     kvalue(MAXCHAR_CVALUE)	input text string
+c     length_token		end of text contents within kvalue()
+c     ivalue			ivalueTH value to find trailign delimiter
+c Outgoing:
+c     ldemiit 			location in kvalue() of desired delimiter.
+c
+	subroutine setparm_FindDelimiter(kvalue,MAXCHAR_CVALUE,length_token,
+     +							ivalue,ldelimit)
+
+	implicit none
+
+	integer	MAXCHAR_CVALUE,length_token,ivalue,ldelimit
+	character*1 kvalue(MAXCHAR_CVALUE)
+
+	integer i,item
+
+	ldelimit = 0
+	item = 0
+
+	do i=1,length_token
+		if(kvalue(i) .EQ. ',')then
+			item = item + 1
+			if(item .EQ. ivalue)then
+				ldelimit = i
+				return
+			endif
+		endif
+	enddo
+
+c last valued item will not have a trailing ',' when i reaches length_token
+	if(ivalue .EQ. 1)     ldelimit = length_token + 1
+	if(ivalue .EQ. item+1)ldelimit = length_token + 1
+	if(ivalue .NE. item+1)ldelimit = 0
+
+	return
+	end
+
+c------------------------------------------------------------------------------
+c construct integer value going left to right. Quit at first non-number.
+c incoming:   kvalue(istart:iend)= section of char text to extract from.
+c outgoing:   jvalue		= extracted integer number
+c	      jsign 		= sign of extracted integer number
+c	      jstatus		= 4 : successful over whole range.
+c				= 3 : encountered exponent character in string
+c				= 2 : encountered decimal point within string
+c				= 1 : encountered non-valid character in string
+c				= 0 : no usable value
+c	      jterminate	= when jstatus = 1, 2, or 3: location
+c				    of encountered character in kvalue()
+c
+	subroutine setparm_ConstructNumber(kvalue,nvalue,istart,iend,
+     +					jsign,jvalue,jstatus,jterminate)
+
+	implicit none
+
+	integer	    nvalue,istart,iend,jsign,jvalue,jstatus,jterminate
+	character*1 kvalue(nvalue)
+
+	integer	i,ksign,kstart,kend
+
+	jsign   = 1
+	jvalue  = 0
+	jstatus = 0
+	jterminate = 0
+	kstart  = istart
+	kend    = iend
+
+c check if negative number or positive sign given.
+	ksign = +1
+	if(kvalue(kstart) .EQ. '-')then
+		if(kstart .EQ. kend)then
+			jsign = 0
+			jstatus = 0
+			jvalue = 0
+			return
+		endif
+		ksign = -1
+		kstart = kstart + 1
+	elseif(kvalue(kstart) .EQ. '+')then
+		if(kstart .EQ. kend)then
+			jsign = 0
+			jstatus = 0
+			jvalue = 0
+			return
+		endif
+		ksign = +1
+		kstart = kstart + 1
+	endif
+
+c extract integer number
+	do i=kstart,kend
+c check for period '.'
+		if(kvalue(i) .EQ. '.')then
+			jsign  = ksign
+			jvalue = jvalue
+			jstatus = 2
+			jterminate = i
+			return
+c check for exponent indicator 'e' 'E'  and 'd' 'D'
+		elseif(kvalue(i) .EQ. 'e' .OR. kvalue(i) .EQ. 'E' .OR.
+     +				kvalue(i) .EQ. 'd' .OR. kvalue(i) .EQ. 'D')then
+			jsign  = ksign
+			jvalue = jvalue
+			jstatus = 3
+			jterminate = i
+			return
+c check for non-valid character
+		elseif(ichar(kvalue(i)).LT.48 .OR. ichar(kvalue(i)).GT.57)then
+			jsign  = ksign 
+			jvalue = jvalue
+			jstatus = 1
+			jterminate = i
+			return
+		else
+c accumulate this digit
+c first check if potential to overflow:
+			if(jvalue .GT.200000000)then
+				jsign = 0
+				jvalue = 0
+				jstatus = 0
+				return
+			endif
+			jvalue = jvalue*10 + (ichar(kvalue(i)) -48)
+		endif
+	enddo
+
+c if here, ran length of istart:iend range and have valid number
+	jsign  = ksign 
+	jvalue = jvalue
+	jstatus = 4
+	jterminate=kend+1
+
+	return
+	end
+
+c..............................................................................
+c construct Double value going left to right. Quit at first non-number.
+c incoming:   kvalue(istart:iend)= section of char text to extract from.
+c outgoing:   xvalue8		= extracted double number
+c	      xsign8 		= sign of extracted double number
+c	      jstatus		= 4 : successful over whole range.
+c				= 3 : encountered exponent character in string
+c				= 2 : encountered decimal point within string
+c				= 1 : encountered non-valid character in string
+c				= 0 : no usable value
+c	      jterminate	= when jstatus = 1, 2, or 3: location
+c				    of encountered character in kvalue()
+c
+	subroutine setparm_ConstructNumber8(kvalue,nvalue,istart,iend,
+     +					xsign8,xvalue8,jstatus,jterminate)
+
+	implicit none
+
+	integer	    nvalue,istart,iend, jstatus,jterminate
+	real*8	    xsign8,xvalue8
+	character*1 kvalue(nvalue)
+
+	integer	i,kstart,kend,	kwork
+	real*8	ysign8,setparm_INT2DOUBLE
+
+
+	xsign8  = 1.0D0
+	xvalue8 = 0.0D0
+	jstatus = 0
+	jterminate = 0
+	kstart  = istart
+	kend    = iend
+
+c check if negative number or positive sign given.
+	ysign8 = +1.0D0
+	if(kvalue(kstart) .EQ. '-')then
+		if(kstart .EQ. kend)then
+			xsign8  = 0.0D0
+			xvalue8 = 0.0D0
+			jstatus = 0
+			return
+		endif
+		ysign8 = -1.0D0
+		kstart = kstart + 1
+	elseif(kvalue(kstart) .EQ. '+')then
+		if(kstart .EQ. kend)then
+			xsign8  = 0.0D0
+			xvalue8 = 0.0D0
+			jstatus = 0
+			return
+		endif
+		ysign8 = +1.0D0
+		kstart = kstart + 1
+	endif
+
+c extract integer number
+	do i=kstart,kend
+c check for period '.'
+		if(kvalue(i) .EQ. '.')then
+			xsign8  = ysign8
+			xvalue8 = xvalue8
+			jstatus = 2
+			jterminate = i
+			return
+c check for exponent indicator 'e' 'E'  and 'd' 'D'
+		elseif(kvalue(i) .EQ. 'e' .OR. kvalue(i) .EQ. 'E' .OR.
+     +				kvalue(i) .EQ. 'd' .OR. kvalue(i) .EQ. 'D')then
+			xsign8  = ysign8
+			xvalue8 = xvalue8
+			jstatus = 3
+			jterminate = i
+			return
+c check for non-valid character
+		elseif(ichar(kvalue(i)).LT.48 .OR. ichar(kvalue(i)).GT.57)then
+			xsign8  = ysign8
+			xvalue8 = xvalue8
+			jstatus = 1
+			jterminate = i
+			return
+		else
+c accumulate this digit
+			kwork = ichar(kvalue(i)) -48
+			xvalue8 = xvalue8*10.D0 + setparm_INT2DOUBLE(kwork)
+		endif
+	enddo
+
+c if here, ran length of istart:iend range and have valid number
+	xsign8  = ysign8
+	xvalue8 = xvalue8
+	jstatus = 4
+	jterminate=kend+1
+
+	return
+	end
+
+
+c------------------------------------------------------------------------------
+c setparm_valueInteger: retrieve one valid integer and determine if keep or not.
+c Incoming:  
+c     kvalue(MAXCHAR_CVALUE)	input text string
+c Outgoing:
+c     jvalue 			(signed) integer value
+c     jstatus 			= 1 : valid number
+c 	  			= 0 : invalid number - nothing will be returned
+c
+	subroutine setparm_valueInteger(kvalue,MAXCHAR_CVALUE,jvalue,jstatus)
+	
+	implicit none
+
+	integer	MAXCHAR_CVALUE,jvalue,jstatus
+	character*1 kvalue(MAXCHAR_CVALUE)
+	
+	integer length_token,istart,iend,lvalue,lstatus
+
+	jstatus=0
+	jvalue =0
+
+c get string length
+	call setparm_strlen(kvalue,MAXCHAR_CVALUE,length_token)
+
+	if(length_token .EQ. 0)then
+		jstatus = 0
+		jvalue  = 0
+		return
+	endif
+
+	istart = 1
+	iend   = length_token
+	call setparm_get1integer(kvalue,MAXCHAR_CVALUE,istart,iend,
+     +							lvalue,lstatus)
+
+c keep lvalue if lstatus >= 1
+	if(lstatus .GE. 1)then 
+		jvalue = lvalue
+		jstatus= 1
+	endif
+
+	return
+	end
+
+c--------------------
+c setparm_get1integer:  get one valid integer from a specified text range
+c Incoming:
+c     kvalue(MAXCHAR_CVALUE)	input text string
+c     istart,iend		retrieve from within this text range
+c Outgoing:
+c     lvalue 			(signed) integer value
+c     lstatus			= 0 don't use
+c				= 1 keep but terminate successive searches
+c				= 2 keep but found delimiter
+c				= 3 keep - used full text range
+c
+	subroutine setparm_get1integer(kvalue,MAXCHAR_CVALUE,istart,iend,
+     +							lvalue,lstatus)
+	
+	implicit none
+
+	integer	MAXCHAR_CVALUE,istart,iend,lvalue,lstatus
+	character*1 kvalue(MAXCHAR_CVALUE)
+	
+	integer kstart,kend,kstatus,kterminate,mvalue,msign
+
+	lstatus=0
+	lvalue =0
+
+	kstart = istart
+	kend   = iend
+	call setparm_ConstructNumber(kvalue,MAXCHAR_CVALUE,kstart,kend,
+     +					msign,mvalue,kstatus,kterminate)
+
+c keep mvalue if kstatus >= 1
+	if(kstatus .GE. 1)then 
+		lvalue = msign * mvalue
+		lstatus= 1
+	endif
+
+	return
+	end
+
+c------------------------------------------------------------------------------
+c setparm_valueVinteger:  retrieve a series of valid integers 
+c Incoming:  
+c     kvalue(MAXCHAR_CVALUE)	input text string
+c     NumDelimits		number of delimited integers to process
+c Outgoing:
+c     jvalue 			(signed) integer values (MALLOC'ED in getpar().
+c     jstatus 			= 1 : valid number
+c 	  			= 0 : invalid number - nothing will be returned
+c
+	subroutine setparm_valueVinteger(kvalue,MAXCHAR_CVALUE,jvalue,
+     +							NumDelimits,jstatus)
+	
+	implicit none
+
+	integer	MAXCHAR_CVALUE,NumDelimits,jvalue(NumDelimits),jstatus
+	character*1 kvalue(MAXCHAR_CVALUE)
+	
+	integer length_token,istart,iend,lvalue,lstatus,ldelimit
+	integer ivalue,priorDelimit
+
+	do ivalue=1,NumDelimits
+		jvalue(ivalue) =0
+	enddo
+	jstatus=0
+
+c get string length
+	call setparm_strlen(kvalue,MAXCHAR_CVALUE,length_token)
+
+	if(length_token .EQ. 0)then
+		jstatus = 0
+		return
+	endif
+
+c loop over known delimiting positions
+	priorDelimit=0
+	do ivalue=1,NumDelimits
+		call setparm_FindDelimiter(kvalue,MAXCHAR_CVALUE,length_token,
+     +							ivalue,ldelimit)
+		if(ldelimit .EQ. priorDelimit+1)then
+			lvalue=0
+			lstatus=2
+		else
+			istart = priorDelimit + 1
+			iend   = ldelimit - 1
+			call setparm_get1integer(kvalue,MAXCHAR_CVALUE,istart,
+     +							iend,lvalue,lstatus)
+		endif
+
+c		keep lvalue in all cases.
+		if(lstatus .GE. 0)then 
+			jvalue(ivalue) = lvalue
+			priorDelimit = ldelimit
+		endif
+	enddo
+
+	jstatus = 1
+
+	return
+	end
+c------------------------------------------------------------------------------
+c setparm_valueFloat: retrieve one valid real # and determine if to keep or not.
+c Incoming:
+c   kvalue(MAXCHAR_CVALUE)	input text string
+c Outgoing;
+c   yvalue			(signed) real value
+c   jstatus			= 1 : valid number
+c				= 0 : invalid number - nothing is returned
+
+	subroutine setparm_valueFloat(kvalue,MAXCHAR_CVALUE,yvalue,jstatus)
+	
+	implicit none
+
+	integer	MAXCHAR_CVALUE,jstatus
+	character*1 kvalue(MAXCHAR_CVALUE)
+	real	yvalue
+
+	integer length_token,istart,iend,lstatus
+	real*8	zvalue8
+
+	jstatus = 0
+	yvalue  = 0.0000000000
+
+c get string length
+	call setparm_strlen(kvalue,MAXCHAR_CVALUE,length_token)
+
+	if(length_token .EQ. 0)then
+		jstatus = 0
+		yvalue  = 0.0000000000
+		return
+	endif
+
+	istart = 1
+	iend   = length_token
+	call setparm_get1double(kvalue,MAXCHAR_CVALUE,istart,iend,
+     +							zvalue8,lstatus)
+
+c keep zvalue if lstatus >1 1
+	if(lstatus .GE. 1)then
+		jstatus = 1
+		yvalue = SNGL(zvalue8)
+	endif
+
+	return
+	end
+
+
+c------------------------------------------------------------------------------
+c setparm_get1double: get one valid double number from a specified text range.
+c   The returned value is Double-Precision (R*8); the conversion back to
+c   single-precision (R*4) must happen withing the calling routine.
+c Incoming:
+c   kvalue(MAXCHAR_CVALUE)	input text string
+c   istart,iend			retrieve from within this text range
+c Outgoing;
+c   zvalue8			(signed) double precision (R*8) value
+c   lstatus			= 0 : don't use
+c				= 1 : keep but termiante successive searchers
+c				= 2 : keep but found delimiter
+c				= 3 : keep - used full text range
+
+	subroutine setparm_get1double(kvalue,MAXCHAR_CVALUE,istart,iend,
+     +							zvalue8,lstatus)
+	
+	implicit none
+
+	integer	MAXCHAR_CVALUE,istart,iend,lstatus
+	character*1 kvalue(MAXCHAR_CVALUE)
+	real*8	zvalue8
+	
+	real*8	xvalue,xinteger,xremainder,xsign,xexponent
+	real*8	ysign,yinteger
+	integer kstart,kend,kstatus,kterminate
+
+	lstatus=0
+	zvalue8 =0.0000000000D0
+
+c----------
+	xsign      = 0.0D0
+	xinteger   = 0.0D0
+	xremainder = 0.0D0
+	xexponent  = 0.0D0
+	ysign	   = 0.0D0
+	yinteger   = 0.0D0
+
+c Start with integral portion of decimal number
+	kstart = istart
+	kend   = iend
+	call setparm_ConstructNumber8(kvalue,MAXCHAR_CVALUE,kstart,kend,
+     +					xsign,xinteger,kstatus,kterminate)
+c	xsign    = setparm_INT2DOUBLE(jsign)
+c	xinteger = setparm_INT2DOUBLE(jvalue)
+
+c interpret validity of number based on kstatus
+c   completely bad argument 
+	if(kstatus .EQ. 0)then
+		lstatus = 0
+		zvalue8 = 0.0D0
+		return
+
+c   partial number then bad argument
+	elseif(kstatus .EQ. 1)then
+		lstatus = 1
+		zvalue8 = xsign * xinteger
+		return
+
+c   integral portion composes entire string
+	elseif(kstatus .EQ. 4)then
+		lstatus = 1
+		zvalue8 = xsign * xinteger
+		return
+	endif
+
+c---------
+c if here, either decimal point or exponent encountered.
+	goto(1000,2000,3000,1000)kstatus
+1000	return
+
+
+c kstatus .EQ. 2, found decimal point: 
+2000	continue
+
+c first check if no remainder exists
+	if(kterminate .EQ. iend)then
+		lstatus = 1
+		zvalue8 = xsign * xinteger
+		return
+	endif
+
+c If here, some text exists denoting possible remainder
+	kstart = kterminate+1
+	ysign=1.0D0
+	yinteger=0.0D0
+	call setparm_ConstructNumber8(kvalue,MAXCHAR_CVALUE,kstart,kend,
+     +					ysign,yinteger,kstatus,kterminate)
+
+	if(kstatus .EQ. 0)then
+		lstatus = 1
+c		zvalue8 = xsign * xinteger
+		zvalue8 = 0.0D0
+		return
+	elseif(ysign .LT. 0.0D0)then
+		lstatus = 1
+		zvalue8 = xsign * xinteger
+		return	
+	elseif(kstatus .EQ. 1 .OR. kstatus .EQ. 2 .OR. kstatus .EQ. 4)then
+		xremainder = yinteger
+		xremainder = xremainder/DBLE(10.**(kterminate-1 - kstart + 1))
+
+		xvalue = xsign * (xinteger + xremainder)
+
+		lstatus = 1
+		zvalue8 = xvalue
+		return
+	elseif(kstatus .EQ. 3)then
+		xremainder = yinteger
+		xremainder = xremainder/DBLE(10.**(kterminate-1 - kstart + 1))
+
+		goto 3000
+	endif
+
+
+c kstatus .EQ. 3: exponent encountered
+3000	continue
+
+c first check if no exponent exists
+	if(kterminate .EQ. iend)then
+		xvalue = xsign * (xinteger + xremainder)
+		lstatus = 1
+		zvalue8 = xvalue
+		return
+	endif
+
+c If here, some text exists denoting possible exponent
+	kstart = kterminate+1
+	ysign = 1.0D0
+	yinteger=0.0D0
+	call setparm_ConstructNumber8(kvalue,MAXCHAR_CVALUE,kstart,kend,
+     +					ysign,yinteger,kstatus,kterminate)
+
+	if(kstatus .EQ. 0)then
+		xvalue = xsign * (xinteger + xremainder)
+		lstatus=1
+		zvalue8 = xvalue
+		return
+	elseif(kstatus .GE. 1 .AND. kstatus .LE. 4)then
+		xexponent = ysign*yinteger 
+		xexponent = (10.000D0)**xexponent
+
+		xvalue = xsign * (xinteger + xremainder) * xexponent
+
+		lstatus = 1
+		zvalue8 = xvalue
+		return
+	endif
+	
+	return
+	end
+
+
+c------------------------------------------------------------------------------
+c setparm_valueVfloat:  retrieve a series of valid floating pt numbers 
+c Incoming:  
+c     kvalue(MAXCHAR_CVALUE)	input text string
+c     NumDelimits		number of delimited integers to process
+c Outgoing:
+c     zvalue4 			(signed) real*4 values (MALLOC'ED in getpar().
+c     jstatus 			= 1 : valid number
+c 	  			= 0 : invalid number - nothing will be returned
+c
+	subroutine setparm_valueVfloat(kvalue,MAXCHAR_CVALUE,zvalue4,
+     +							NumDelimits,jstatus)
+	
+	implicit none
+
+	integer	MAXCHAR_CVALUE,NumDelimits,jstatus
+	character*1 kvalue(MAXCHAR_CVALUE)
+	real  zvalue4(NumDelimits)
+	
+	integer length_token,istart,iend,lstatus,ldelimit
+	integer ivalue,priorDelimit
+	real*8	xvalue8
+
+	do ivalue=1,NumDelimits
+		zvalue4(ivalue) =0.00000000000000
+	enddo
+	jstatus=0
+
+c get string length
+	call setparm_strlen(kvalue,MAXCHAR_CVALUE,length_token)
+
+	if(length_token .EQ. 0)then
+		jstatus = 0
+		return
+	endif
+
+c loop over known delimiting positions
+	priorDelimit=0
+	do ivalue=1,NumDelimits
+		call setparm_FindDelimiter(kvalue,MAXCHAR_CVALUE,length_token,
+     +							ivalue,ldelimit)
+		if(ldelimit .EQ. priorDelimit+1)then
+			xvalue8=0.0D0
+			lstatus=2
+		else
+			istart = priorDelimit + 1
+			iend   = ldelimit - 1
+			call setparm_get1double(kvalue,MAXCHAR_CVALUE,istart,
+     +							iend,xvalue8,lstatus)
+		endif
+
+c		keep xvalue8 in all cases.
+		if(lstatus .GE. 0)then 
+			zvalue4(ivalue) = SNGL(xvalue8)
+			priorDelimit = ldelimit
+		endif
+	enddo
+
+	jstatus = 1
+
+	return
+	end
+
+
+
+c====================================================================
+c------------------------------------------------------------------------------
+c setparm_valueDoubleFloat: retrieve one valid real # and determine if to keep or not.
+c Incoming:
+c   kvalue(MAXCHAR_CVALUE)	input text string
+c Outgoing;
+c   yvalue			(signed) real value
+c   jstatus			= 1 : valid number
+c				= 0 : invalid number - nothing is returned
+
+	subroutine setparm_valueDoubleFloat(kvalue,MAXCHAR_CVALUE,yvalue,
+     +								jstatus)
+	
+	implicit none
+
+	integer	MAXCHAR_CVALUE,jstatus
+	character*1 kvalue(MAXCHAR_CVALUE)
+	real*8	yvalue
+
+	integer length_token,istart,iend,lstatus
+	real*8	zvalue8
+
+	jstatus = 0
+	yvalue  = 0.000D0
+
+c get string length
+	call setparm_strlen(kvalue,MAXCHAR_CVALUE,length_token)
+
+	if(length_token .EQ. 0)then
+		jstatus = 0
+		yvalue  = 0.000D0
+		return
+	endif
+
+	istart = 1
+	iend   = length_token
+	call setparm_get1double(kvalue,MAXCHAR_CVALUE,istart,iend,
+     +							zvalue8,lstatus)
+
+c keep zvalue if lstatus >1 1
+	if(lstatus .GE. 1)then
+		jstatus = 1
+		yvalue = zvalue8
+	endif
+
+	return
+	end
+
+
+
+c------------------------------------------------------------------------------
+c setparm_valueVdoublefloat:  retrieve a series of valid floating pt numbers 
+c Incoming:  
+c     kvalue(MAXCHAR_CVALUE)	input text string
+c     NumDelimits		number of delimited integers to process
+c Outgoing:
+c     zvalue8 			(signed) real*8 values (MALLOC'ED in getpar().
+c     jstatus 			= 1 : valid number
+c 	  			= 0 : invalid number - nothing will be returned
+c
+	subroutine setparm_valueVdoublefloat(kvalue,MAXCHAR_CVALUE,zvalue8,
+     +							NumDelimits,jstatus)
+	
+	implicit none
+
+	integer	MAXCHAR_CVALUE,NumDelimits,jstatus
+	character*1 kvalue(MAXCHAR_CVALUE)
+	real*8  zvalue8(NumDelimits)
+	
+	integer length_token,istart,iend,lstatus,ldelimit
+	integer ivalue,priorDelimit
+	real*8	xvalue8
+
+	do ivalue=1,NumDelimits
+		zvalue8(ivalue) =0.0D0
+	enddo
+	jstatus=0
+
+c get string length
+	call setparm_strlen(kvalue,MAXCHAR_CVALUE,length_token)
+
+	if(length_token .EQ. 0)then
+		jstatus = 0
+		return
+	endif
+
+c loop over known delimiting positions
+	priorDelimit=0
+	do ivalue=1,NumDelimits
+		call setparm_FindDelimiter(kvalue,MAXCHAR_CVALUE,length_token,
+     +							ivalue,ldelimit)
+		if(ldelimit .EQ. priorDelimit+1)then
+			xvalue8=0.0D0
+			lstatus=2
+		else
+			istart = priorDelimit + 1
+			iend   = ldelimit - 1
+			call setparm_get1double(kvalue,MAXCHAR_CVALUE,istart,
+     +							iend,xvalue8,lstatus)
+		endif
+
+c		keep xvalue8 in all cases.
+		if(lstatus .GE. 0)then 
+			zvalue8(ivalue) = xvalue8
+			priorDelimit = ldelimit
+		endif
+	enddo
+
+	jstatus = 1
+
+	return
+	end
+c------------------------------------------------------------------------------
+c for this token interpret value string as a character string
+c jstatus = 1 : valid string
+c 	  = 0 : invalid string - nothing will be returned
+c
+c NOTE:  There is no way to determine if this incoming string will
+c 	 overflow the CHAR*xx declaration for the character variable
+c	 as defined in the getpar("","s",char_variable) call.
+c	 All we can do is pass back the resulting string as provided
+c	 and hope that the recipient char_variable is long enough.
+c
+	subroutine setparm_valueString(kvalue,MAXCHAR_CVALUE,jstatus)
+	
+	implicit none
+
+	integer	MAXCHAR_CVALUE,jstatus
+	character*1 kvalue(MAXCHAR_CVALUE)
+	
+	integer length_token
+
+	jstatus=0
+
+c get string length
+	call setparm_strlen(kvalue,MAXCHAR_CVALUE,length_token)
+
+	if(length_token .EQ. 0)then
+		jstatus = 0
+		return
+	endif
+
+	jstatus = 1
+
+	return
+	end
+
+c process a par filename if par=name is provided
+c 	par=name activates this routine.
+c	setparm_num, cname(),cvalue() is updated via common block.
+c
+c here, the acceptable par_file size is 1 MB characters.  This is a
+c	hardware which can be increased, then recompiled.
+c
+c 04nov03 installation.
+c 06nov03 modify fortran OPEN/READ of text lines.
+c 28nov03 udpate for getparm() package.
+
+	subroutine loadparm_parfile()
+	implicit none
+
+	common /globals/setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+	integer*4	setparm_num,MAXCHAR_CTOKEN,MAXCHAR_CNAME,MAXCHAR_CVALUE
+
+	common /cnamevalue/ MAXARGS,M_CNAME,M_CVALUE,cname,cvalue
+	integer		MAXARGS,M_CNAME,M_CVALUE
+	character*64	cname(1000)
+	character*180	cvalue(1000)
+
+c NOTE maximum par_file size defined here at 1 MB.
+	character*64	cpar
+	character*180	cfilename
+	character*1	cfile(1000000)
+	integer		PARFILESIZE,nchar_file, jstatus
+
+
+	PARFILESIZE = 1000000
+	cpar = "parmfile"
+
+	if(cname(setparm_num) .NE. cpar) RETURN
+
+c if here, found a par=name name/value entry.
+	cfilename  = cvalue(setparm_num)
+	nchar_file = 0
+	jstatus    = 0
+	call loadparm_GetParfile(cfilename,cfile,PARFILESIZE,nchar_file,jstatus)
+	if(jstatus .LT. 0)return
+
+	call loadparm_Preprocess(cfile,nchar_file,jstatus)
+
+	call loadparm_Tokenize(cfile,nchar_file)
+
+	return
+	end
+
+
+
+
+c jstatus = 0   parfile is OK
+c         = -1  not able to open.
+c         = -2  contents is too small (too few characters).
+	subroutine loadparm_GetParfile(cparfile,cfile,PARFILESIZE,
+     +							nchar_file,jstatus)
+	implicit none
+	character*180	cparfile,   c180
+	integer		PARFILESIZE,nchar_file, jstatus, n180,nlength, i
+	character*1	cfile(PARFILESIZE),c1(180), creturnJ
+	equivalence	(c180,c1)
+
+	n180	   = 180
+	nchar_file = 0
+	jstatus    = 0
+
+	creturnJ = char(10)
+
+	open(21,file=cparfile,err=900)
+c       open(21,file=cinx,access='direct',recl=4*ny,form='unformatted')
+
+
+100	continue
+c	read(21,err=300)c1
+	read(21,200,end=300,err=300)c180
+200	format(a180)
+		call setparm_strlen(c1,n180,nlength)
+
+		do i=1,nlength
+			nchar_file = nchar_file + 1
+			cfile(nchar_file) = c1(i)
+			if(nchar_file .EQ. PARFILESIZE)goto300
+		enddo
+		
+c  terminate current line with a return. We'll remove this later,
+c  but we need it to know where comment lines terminate.
+		nchar_file = nchar_file + 1
+		cfile(nchar_file) = creturnJ
+		if(nchar_file .EQ. PARFILESIZE)goto300
+		
+		goto 100
+
+c when here, read full contents of par file; now determine if OK.
+c minimum size must be "x=y" which is 3 characters.
+300	continue
+	close(21)
+	if(nchar_file .LT. 3)goto910
+
+	return
+
+c could not open file name
+900	jstatus = -1
+	return
+
+c par file is too small ( .LT. 3 characters)
+910	jstatus = -2
+	return
+
+	end
+
+
+c this routine converts all characters between tokens to be spaces.
+c  tab				     -> space
+c  return (^J or ^M)		     -> space
+c  back-slash & return combinations  -> space-space
+c  return & # indicates comment line -> # through next return set to spaces.
+
+	subroutine loadparm_Preprocess(cfile,nchar_file,jstatus)
+	implicit none
+	integer		nchar_file, jstatus, i,j,k
+	character*1	cfile(nchar_file)
+
+	character*1	cnull,ctab,cspace,cback,creturnJ,creturnM,ccomment
+
+	cnull	= char(0)
+	ctab 	= char(9)
+	cback	= char(92)
+	creturnJ = char(10)
+	creturnM = char(13)
+	ccomment = char(35)
+	cspace	 = char(32)
+
+	jstatus = 0
+
+c (1) remove tabs
+	do i = 1,nchar_file
+		if(cfile(i) .EQ. ctab) cfile(i) = cspace
+	enddo
+
+c (2) remove nulls
+	do i = 1,nchar_file
+		if(cfile(i) .EQ. cnull) cfile(i) = cspace
+	enddo
+
+c (3) replace any ^M returns with ^J
+	do i = 1,nchar_file
+		if(cfile(i) .EQ. creturnM)cfile(i) = creturnJ
+	enddo
+
+c (4) remove comments: "# .... return"  denotes comment.
+
+c Search for "#" symbol.  When found, comment symbol through trailing
+c 	return become spaces.
+c Then outer loop will probably re-examine some characters which were
+c	part of the comment now converted to spaces.  This is a benign
+c	search because they will be simply spaces.
+
+	do i=1,nchar_file
+		if(cfile(i) .EQ. ccomment)then
+		    do j=i+1,nchar_file
+		    	if(cfile(j) .EQ. creturnJ .OR. j .EQ. nchar_file)then
+		    	    do k=i,j
+		    	    	cfile(k) = cspace
+		    	    enddo
+			    goto300
+		    	endif
+		    enddo
+		endif
+300		continue
+	enddo
+
+
+c (5) replace backslash-return with two spaces
+c	NOTE:  to be correct, this should compress by 2 characters, not be
+c	replaced with two spaces.
+	do i=2,nchar_file
+		if(cfile(i-1) .EQ. cback .AND. cfile(i) .EQ. creturnJ)then
+			cfile(i-1) = cspace
+			cfile(i)   = cspace
+		endif
+	enddo
+
+c (6) replace all returns with cspace
+	do i=1,nchar_file
+		if(cfile(i) .EQ. creturnJ)cfile(i) = cspace
+	enddo
+
+c at this point, the par file contents are either valid tokens or 
+c sets of delimiting spaces.  No returns, tabs, or other delimiting characters.
+
+	RETURN
+	end
+
+
+
+
+
+	subroutine loadparm_Tokenize(cfile,nchar_file)
+	implicit none
+	integer nchar_file
+	character*1 cfile(nchar_file)
+
+	character*1 ctoken(245),	cspace
+	character*245 ctoken245
+	equivalence (ctoken,ctoken245)
+	integer	 iptr,	i
+
+	cspace = char(32)
+
+	iptr=0
+100	continue
+	iptr = iptr + 1
+	if(iptr .GT. nchar_file)goto900
+	if(cfile(iptr) .EQ. cspace) goto 100
+
+c if here, found start of a token. clear ctoken array, then transfer.
+	do i=1,245
+		ctoken(i) = cspace
+	enddo
+	i = 0
+
+c first save non-space, then check next char for termination space 
+200	continue
+	if(cfile(iptr) .EQ. cspace)goto 300
+	i = i+1
+	ctoken(i) = cfile(iptr)
+	iptr = iptr + 1
+	if(iptr .GT. nchar_file .AND. i .GT. 0)goto300
+	if(iptr .GT. nchar_file .AND. i .EQ. 0)goto900
+	
+	goto200
+
+c when here, we have extracted a valid token.  Now parse it and fill into
+c cname() and cvalue(), incrementing setparm_num via common blocks.
+300	continue
+	call loadparm_parse(ctoken245)
+
+c completed processing of this token, go look for next one
+	goto100
+
+900	continue
+	return
+	end
+
+c----------------------------------------------------------------------------
+	subroutine loadparm_setdir(cdirection)
+	implicit none
+	character*8 cdirection
+
+	character*8 c8
+	character*1 c1(8)
+	equivalence (c8,c1)
+	integer	    n8
+
+	common /loadparm_dir/loadparm_direction
+	integer*4	loadparm_direction
+
+	c8 = cdirection
+
+	n8 = 8
+	call setparm_lowercase(c1,n8)
+
+	loadparm_direction = 1
+
+	if    (c8 .EQ. 'leading')then
+		loadparm_direction = 1
+	elseif(c8 .EQ. 'trailing')then
+		loadparm_direction = -1
+	else
+		loadparm_direction = 1
+	endif
+	
+	return
+	end
+
+
+c----------------------------------------------------------------------------
+c=============================================================================
+c=============================================================================
+c=============================================================================
+c UTILITIES TO INTERPRET GETPAR CHARACTER RESPONSES
+c	These routines allow code to ask for options using
+c	YES/NO, TRUE/FALSE, or CHOICE_A/CHOICE_B instead
+c	of =0, =1 flags
+c examples:
+c	main option={YES/NO} switch={ON/OFF} logic={TRUE/FALSE} choice={A/B}
+c
+c	main option=yes switch=off logic=false choice=ASTRING
+c	main option=N switch=ON logic=T choice=bstring
+c
+c jflag_return values:
+c	 0 = no/off/false/A
+c	 1 = yes/on/true/B
+c	-1 = copt value not recognized as valid choice
+c
+c	when jflag_return = -1, keep whatever default may have been set.
+c
+c subroutine functions:
+c	subroutine setparm_yesno4(copt,jflag_return)
+c	subroutine setparm_onoff4(copt,jflag_return)
+c	subroutine setparm_truefalse8(copt,jflag_return)
+c	subroutine setparm_choiceAorB(copt,choiceA,choiceB,nchar,jflag_return)
+c	subroutine setparm_lowercase(copt,nchar)
+c	subroutine setparm_fixstring(cstring, ndeclaration)
+c
+c---------------------
+c 08Nov98 DAO	Initial implementation
+c 30jul00 DAO   getparm_lowercase: fix if() comparison of character to ASCII 
+c			decimal value by using ichar().
+c---------------------
+
+
+c---------------------
+c Yes/No or True/False
+c   No = FALSE = OFF = 0
+c   Yes = TRUE = ON  = 1
+c default must be set outside prior to call; no default assumed here.
+	subroutine setparm_yesno4(copt,jflag_return)
+	character*4 copt,cwork
+	character*1 c1(4)
+	equivalence (cwork,c1)
+
+	cwork = copt
+	call setparm_fixstring(cwork,4)
+	call setparm_lowercase(cwork,4)
+	
+	jset=0
+	if(cwork .EQ. "yes " .OR. cwork .EQ. "y   ")then
+		jflag_return=1
+		jset=1
+	endif
+c	if(c1(1) .EQ. "y")then
+c		jflag_return=1
+c		jset=1
+c	endif
+
+	if(cwork .EQ. "no  " .OR. cwork .EQ. "n   ")then
+		jflag_return=0
+		jset=1
+	endif
+c	if(c1(1) .EQ. "n")then
+c		jflag_return=0
+c		jset=1
+c	endif
+
+	if(jset .EQ. 0)then
+		jflag_return = -1
+	endif
+	
+	RETURN
+	end
+
+
+c---------------------
+c Yes/No or True/False
+c   No = FALSE = OFF = 0
+c   Yes = TRUE = ON  = 1
+c default must be set outside prior to call; no default assumed here.
+	subroutine setparm_onoff4(copt,jflag_return)
+	character*4 copt,cwork
+	character*1 c1(4)
+	equivalence (cwork,c1)
+
+	cwork = copt
+	call setparm_fixstring(cwork,4)
+	call setparm_lowercase(cwork,4)
+	
+	jset=0
+	if(cwork .EQ. "on  ")then
+		jflag_return=1
+		jset=1
+	endif
+
+	if(cwork .EQ. "off ")then
+		jflag_return=0
+		jset=1
+	endif
+
+	if(jset .EQ. 0)then
+		jflag_return = -1
+	endif
+	
+	RETURN
+	end
+
+c---------------------
+c Yes/No or True/False
+c   No = FALSE = 0
+c   Yes = TRUE = 1
+c default must be set outside prior to call; no default assumed here.
+	subroutine setparm_truefalse8(copt,jflag_return)
+	character*8 copt,cwork
+	character*1 c1(8)
+	equivalence (cwork,c1)
+
+	cwork = copt
+	call setparm_fixstring(cwork,8)
+	call setparm_lowercase(cwork,8)
+	
+	jset=0
+	if(cwork .EQ. "true    " .OR. cwork .EQ. "t       ")then
+		jflag_return=1
+		jset=1
+	endif
+c	if(c1(1) .EQ. "t")then
+c		jflag_return=1
+c		jset=1
+c	endif
+
+	if(cwork .EQ. "false   " .OR. cwork .EQ. "f       ")then
+		jflag_return=0
+		jset=1
+	endif
+c	if(c1(1) .EQ. "f" )then
+c		jflag_return=0
+c		jset=1
+c	endif
+
+	if(jset .EQ. 0)then
+		jflag_return = -1
+	endif
+	
+	RETURN
+	end
+
+
+c---------------------
+c Character choices: 
+c   0 = Choice_A
+c   1 = Choice_B
+c default must be set outside prior to call; no default assumed here.
+	subroutine setparm_choiceAorB(copt,choiceA,choiceB,nchar,jflag_return)
+
+	character*1 copt(nchar),choiceA(nchar),choiceB(nchar)
+
+	call setparm_fixstring(copt,nchar)
+	call setparm_fixstring(choiceA,nchar)
+	call setparm_fixstring(choiceB,nchar)
+	
+	call setparm_lowercase(copt,nchar)
+	call setparm_lowercase(choiceA,nchar)
+	call setparm_lowercase(choiceB,nchar)
+
+	jmatch= -1
+	do i=1,nchar
+		if(copt(i) .NE. choiceA(i))goto100
+	enddo
+	jmatch=0
+	goto500
+
+100	continue
+	do i=1,nchar
+		if(copt(i) .NE. choiceB(i))goto500
+	enddo
+	jmatch=1
+	goto500
+
+500	jflag_return = jmatch
+	RETURN
+	end
+
+
+
+c---------------------
+c convert any upper case to lower case
+c Upper case ASCII:   A to Z is 65 to 90
+c Lower case ASCII:   a to z is 97 to 122
+c shift is value of +32
+	subroutine setparm_lowercase(copt,nchar)
+	integer nchar
+	character*1 copt(nchar)
+	
+	do i=1,nchar
+		if(ichar(copt(i)) .GE. 65 .AND. ichar(copt(i)) .LE. 90)then
+			copt(i) = char(ichar(copt(i)) +32)
+		endif
+	enddo
+	RETURN
+	end
+
+c---------------------
+c subroutine fixstring()
+c
+c for character strings brought in by getpar(), the strings are
+c	terminated by a NULL if shorter than the declaration length.
+c	Contents after the NULL are junk leftover from a prior use.
+c
+c	In FORTRAN, when a character string is shorter than its declaration
+c	length, the string is padded to its full length with spaces (ASCII=32).
+c
+c	In order to compare or equate the getpar() string with a FORTRAN
+c	character variable, the getpar() string must have its NULL and
+c	trailing junk reset to spaces (ASCII=32).
+
+
+	subroutine setparm_fixstring(cstring, ndeclaration)
+	integer	    ndeclaration
+	character*1 cstring(ndeclaration)
+
+	integer	    i,j,NULL
+
+	NULL = 0
+	NSPACE=32
+
+	do i=1,ndeclaration
+		if(ichar(cstring(i)) .EQ. NULL)then
+			do j= i,ndeclaration
+				cstring(j) = char(NSPACE)
+			enddo
+			goto100
+		endif
+	enddo
+
+100	continue
+	RETURN
+	end
+c=============================================================================
+c=============================================================================
+
+
+
+	real*8 function setparm_INT2DOUBLE(intvalue)
+	integer	intvalue
+	real	xvalue
+	real*8	dvalue
+
+	xvalue = FLOAT(intvalue)
+	dvalue = DBLE(xvalue)
+
+	setparm_int2double = dvalue
+
+	return
+
+	end

Added: SwiftApps/Cybershake/app/post/Zip/zip_peakSA.sh
===================================================================
--- SwiftApps/Cybershake/app/post/Zip/zip_peakSA.sh	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Zip/zip_peakSA.sh	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,12 @@
+#!/bin/bash
+
+if [ $# -lt 2 ]; then
+	echo "Usage: $0 <directory> <output_file>"
+	exit -1
+fi
+
+DIR=$1
+OUT=$2
+
+find $DIR -name '*.bsa*' | zip -v $OUT -@
+


Property changes on: SwiftApps/Cybershake/app/post/Zip/zip_peakSA.sh
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/Zip/zip_seismograms.sh
===================================================================
--- SwiftApps/Cybershake/app/post/Zip/zip_seismograms.sh	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/Zip/zip_seismograms.sh	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,12 @@
+#!/bin/bash
+
+if [ $# -lt 2 ]; then
+        echo "Usage: $0 <directory> <output_file>"
+        exit -1
+fi
+
+DIR=$1
+OUT=$2
+
+find $DIR -name '*.grm' | zip -v $OUT -@
+


Property changes on: SwiftApps/Cybershake/app/post/Zip/zip_seismograms.sh
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/agg_seispeak.sh
===================================================================
--- SwiftApps/Cybershake/app/post/agg_seispeak.sh	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/agg_seispeak.sh	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,72 @@
+#!/bin/bash
+
+#SEISMOGRAM=/gpfs/pads/swift/aespinosa/science/cybershake/apps/JBSim3d/bin/jbsim3d
+SEISMOGRAM=/home/ketan/cybershake/post/JBSim3d/bin/jbsim3d
+PEAKCALC=/home/ketan/cybershake/post/SpectralAcceleration/p2utils/surfseis_rspectra
+#PEAKCALC=/gpfs/pads/swift/aespinosa/science/cybershake/apps/SpectralAcceleration/p2utils/surfseis_rspectra
+
+seismogram() {
+  $SEISMOGRAM \
+      extract_sgt=0 outputBinary=1 mergeOutput=1  \
+      stat=$1 slon=$2 slat=$3 ntout=$4 \
+      \
+      sgt_xfile=$5 \
+      sgt_yfile=$6 \
+      \
+      rupmodfile=$7 \
+      seis_file=$8
+}
+
+peakcalc() {
+  $PEAKCALC \
+      simulation_out_pointsX=2 simulation_out_pointsY=1 \
+      surfseis_rspectra_seismogram_units=cmpersec \
+      surfseis_rspectra_output_units=cmpersec2 \
+      surfseis_rspectra_output_type=aa \
+      surfseis_rspectra_apply_byteswap=no \
+      \
+      simulation_out_timesamples=$1 \
+      simulation_out_timeskip=$2 \
+      surfseis_rspectra_period=$3 \
+      surfseis_rspectra_apply_filter_highHZ=$4 \
+      \
+      in=$5 \
+      out=$6
+}
+
+n=${11}
+subx=$9
+suby=${10}
+seisargs="$1 $2 $3 $4"
+peakargs="$5 $6 $7 $8"
+
+exitcode=0
+
+shift 11
+echo Number of jobs: $n
+echo ----
+for i in `seq 1 $n`; do
+  # rupvar, seismogram, peakval triples
+  echo "Running seismogram..."
+  echo seismogram $seisargs $subx $suby $1 ${@:(1+n):1} > /dev/stderr
+  seismogram $seisargs $subx $suby $1 ${@:(1+n):1}
+  if [ ! $? -eq 0 ]; then
+    exitcode=$?
+    echo "seismogram failed... Code: $exitcode" > /dev/stderr
+  else
+    echo "seismogram succeed..." > /dev/stderr
+  fi
+  echo "Running peakcalc..."
+  echo peakcalc $peakargs ${@:(1+n):1} ${@:(1+n*2):1} > /dev/stderr
+  peakcalc $peakargs ${@:(1+n):1} ${@:(1+n*2):1}
+  if [ ! $? -eq 0 ]; then
+    exitcode=$?
+    echo "Failed peakcalc... Code: $exitcode" > /dev/stderr
+    #/bin/dd if=/dev/zero of=${@:(1+n*2):1} count=1 bs=24000
+    #exit $?
+  else
+    echo "peakcalc succeed..." > /dev/stderr
+  fi
+  shift 1
+done
+


Property changes on: SwiftApps/Cybershake/app/post/agg_seispeak.sh
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/agg_seispeak.sh.old
===================================================================
--- SwiftApps/Cybershake/app/post/agg_seispeak.sh.old	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/agg_seispeak.sh.old	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,53 @@
+#!/bin/bash
+
+#SEISMOGRAM=/gpfs/pads/swift/aespinosa/science/cybershake/apps/JBSim3d/bin/jbsim3d
+SEISMOGRAM=/home/ketan/cybershake/post/JBSim3d/bin/jbsim3d
+PEAKCALC=/home/ketan/cybershake/post/SpectralAcceleration/p2utils/surfseis_rspectra
+#PEAKCALC=/gpfs/pads/swift/aespinosa/science/cybershake/apps/SpectralAcceleration/p2utils/surfseis_rspectra
+
+seismogram() {
+  echo $SEISMOGRAM \
+      extract_sgt=0 outputBinary=1 mergeOutput=1  \
+      stat=$1 slon=$2 slat=$3 ntout=$4 \
+      \
+      sgt_xfile=$5 \
+      sgt_yfile=$6 \
+      \
+      rupmodfile=$7 \
+      seis_file=$8 
+}
+
+peakcalc() {
+  echo $PEAKCALC \
+      simulation_out_pointsX=2 simulation_out_pointsY=1 \
+      surfseis_rspectra_seismogram_units=cmpersec \
+      surfseis_rspectra_output_units=cmpersec2 \
+      surfseis_rspectra_output_type=aa \
+      surfseis_rspectra_apply_byteswap=no \
+      \
+      simulation_out_timesamples=$1 \
+      simulation_out_timeskip=$2 \
+      surfseis_rspectra_period=$3 \
+      surfseis_rspectra_apply_filter_highHZ=$4 \
+      \
+      in=$5 \
+      out=$6
+}
+
+n=${11}
+subx=$9
+suby=${10}
+seisargs="$1 $2 $3 $4"
+peakargs="$5 $6 $7 $8"
+
+shift 11
+echo $n
+echo ----
+for i in `seq 1 $n`; do 
+  # rupvar, seismogram, peakval triples
+ # seismogram $seisargs $subx $suby $1 ${@:(1+n):1}
+  $SEISMOGRAM $seisargs $subx $suby $1 ${@:(1+n):1}
+ # peakcalc $peakargs ${@:(1+n):1} ${@:(1+n*2):1}
+  $PEAKCALC $peakargs ${@:(1+n):1} ${@:(1+n*2):1}
+  shift 1
+done


Property changes on: SwiftApps/Cybershake/app/post/agg_seispeak.sh.old
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/recompute.sh
===================================================================
--- SwiftApps/Cybershake/app/post/recompute.sh	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/recompute.sh	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,15 @@
+#!/bin/bash
+
+export OSG_APP=/home/aespinosa/Documents/cybershake/osg_simulated
+
+EXTRACT=$OSG_APP/engage/scec/JBSim3d/bin/jbsim3d
+SEISMOGRAM=$OSG_APP/engage/scec/JBSim3d/bin/jbsim3d
+PEAKCALC=$OSG_APP/engage/scec/SpectralAcceleration/p2utils/surfseis_rspectra
+
+SGT_X=$OSG_DATA/engage/scec/LGU/LGU_fx_664.sgt
+SGT_Y=$OSG_DATA/engage/scec/LGU/LGU_fy_664.sgt
+
+$EXTRACT ${@:1:9}
+#$EXTRACT $1 $2 $3 $4 $5 sgt_xfile=$SGT_X sgt_yfile=$SGT_Y $8 $9
+$SEISMOGRAM ${@:10:11}
+$PEAKCALC ${@:21:12}


Property changes on: SwiftApps/Cybershake/app/post/recompute.sh
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/seispeak.sh
===================================================================
--- SwiftApps/Cybershake/app/post/seispeak.sh	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/seispeak.sh	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,12 @@
+#!/bin/bash
+
+#SEISMOGRAM=/gpfs/pads/swift/aespinosa/science/cybershake/apps/JBSim3d/bin/jbsim3d
+#PEAKCALC=/gpfs/pads/swift/aespinosa/science/cybershake/apps/SpectralAcceleration/p2utils/surfseis_rspectra
+
+SEISMOGRAM=/home/ketan/cybershake/post/JBSim3d/bin/jbsim3d
+PEAKCALC=/home/ketan/cybershake/post/SpectralAcceleration/p2utils/surfseis_rspectra
+
+echo $ARGS
+
+$SEISMOGRAM ${@:1:11}
+$PEAKCALC ${@:12:12}


Property changes on: SwiftApps/Cybershake/app/post/seispeak.sh
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/testing/PeakVals_TEST_218_256_127.bsa
===================================================================
(Binary files differ)


Property changes on: SwiftApps/Cybershake/app/post/testing/PeakVals_TEST_218_256_127.bsa
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: SwiftApps/Cybershake/app/post/testing/Seismogram_TEST_218_256_127.grm
===================================================================
(Binary files differ)


Property changes on: SwiftApps/Cybershake/app/post/testing/Seismogram_TEST_218_256_127.grm
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: SwiftApps/Cybershake/app/post/testing/TEST_218_256_subfx.sgt
===================================================================
(Binary files differ)


Property changes on: SwiftApps/Cybershake/app/post/testing/TEST_218_256_subfx.sgt
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: SwiftApps/Cybershake/app/post/testing/TEST_218_256_subfy.sgt
===================================================================
(Binary files differ)


Property changes on: SwiftApps/Cybershake/app/post/testing/TEST_218_256_subfy.sgt
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: SwiftApps/Cybershake/app/post/testing/extract.sh
===================================================================
--- SwiftApps/Cybershake/app/post/testing/extract.sh	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/testing/extract.sh	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,6 @@
+/home/aespinosa/Documents/cybershake/post/JBSim3d/bin/jbsim3d \
+  stat=TEST extract_sgt=1 slon=-118.286 slat=34.0192 \
+  rupmodfile=links/218_256.txt.variation-s0015-h0007 \
+  sgt_xfile=links/TEST_fx_644.sgt sgt_yfile=links/TEST_fy_644.sgt \
+  extract_sgt_xfile=TEST_218_256_subfx.sgt \
+  extract_sgt_yfile=TEST_218_256_subfy.sgt


Property changes on: SwiftApps/Cybershake/app/post/testing/extract.sh
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/testing/links/218_256.txt.variation-s0015-h0007
===================================================================
--- SwiftApps/Cybershake/app/post/testing/links/218_256.txt.variation-s0015-h0007	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/testing/links/218_256.txt.variation-s0015-h0007	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,16322 @@
+1.0
+PLANE 1
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+ -41   89    -0.00    70.00    12.00
+POINTS 2352
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+  1.59199e+01  1.46953e+01  1.34707e+01  1.22461e+01  1.10215e+01  9.79687e+00
+  8.57226e+00  7.34765e+00  6.12304e+00  4.89843e+00  3.67383e+00  2.44922e+00
+  1.22461e+00  0.00000e+00
+ -118.3745   34.0209   15.4981  -24   89  1.00000e+10     1.3086  1.00000e-01
+ 180    20.05     20     0.00      0     0.00      0
+  0.00000e+00  3.13315e+01  6.26629e+01  1.25326e+01  1.17493e+01  1.09660e+01
+  1.01827e+01  9.39944e+00  8.61615e+00  7.83287e+00  7.04958e+00  6.26629e+00
+  5.48301e+00  4.69972e+00  3.91643e+00  3.13315e+00  2.34986e+00  1.56657e+00
+  7.83287e-01  0.00000e+00
+ -118.3790   34.0291   15.4981  -24   89  1.00000e+10     1.5202  1.00000e-01
+ 180     9.32     20     0.00      0     0.00      0
+  0.00000e+00  1.45650e+01  2.91301e+01  5.82602e+00  5.46189e+00  5.09776e+00
+  4.73364e+00  4.36951e+00  4.00539e+00  3.64126e+00  3.27713e+00  2.91301e+00
+  2.54888e+00  2.18476e+00  1.82063e+00  1.45650e+00  1.09238e+00  7.28252e-01
+  3.64126e-01  0.00000e+00

Added: SwiftApps/Cybershake/app/post/testing/peak.sh
===================================================================
--- SwiftApps/Cybershake/app/post/testing/peak.sh	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/testing/peak.sh	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,8 @@
+/home/ketan/cybershake/post/SpectralAcceleration/p2utils/surfseis_rspectra \
+  simulation_out_pointsX=2 simulation_out_pointsY=1 \
+  simulation_out_timesamples=3000 simulation_out_timeskip=0.1 \
+  surfseis_rspectra_seismogram_units=cmpersec \
+  surfseis_rspectra_output_units=cmpersec2 surfseis_rspectra_output_type=aa \
+  surfseis_rspectra_period=all surfseis_rspectra_apply_filter_highHZ=5.0 \
+  surfseis_rspectra_apply_byteswap=no  \
+  in=Seismogram_TEST_218_256_127.grm out=PeakVals_TEST_218_256_127.bsa


Property changes on: SwiftApps/Cybershake/app/post/testing/peak.sh
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/testing/seis.sh
===================================================================
--- SwiftApps/Cybershake/app/post/testing/seis.sh	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/testing/seis.sh	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,6 @@
+/home/ketan/cybershake/post/JBSim3d/bin/jbsim3d \
+    stat=TEST slon=-118.286 slat=34.0192 extract_sgt=0 \
+    outputBinary=1 mergeOutput=1 ntout=3000  \
+    rupmodfile=links/218_256.txt.variation-s0015-h0007 \
+    sgt_xfile=TEST_218_256_subfx.sgt sgt_yfile=TEST_218_256_subfy.sgt \
+    seis_file=Seismogram_TEST_218_256_127.grm


Property changes on: SwiftApps/Cybershake/app/post/testing/seis.sh
___________________________________________________________________
Added: svn:executable
   + *

Added: SwiftApps/Cybershake/app/post/trusted.caches
===================================================================
--- SwiftApps/Cybershake/app/post/trusted.caches	                        (rev 0)
+++ SwiftApps/Cybershake/app/post/trusted.caches	2012-02-21 00:26:50 UTC (rev 5660)
@@ -0,0 +1,5 @@
+#
+#  - List of trusted Pacman Caches -
+#
+# Pacman will modify this file, but you can also edit it by hand at any time.
+#


