[Swift-commit] r5911 - in SwiftApps/CMTS/rmsd: . conf

[davidk at ci.uchicago.edu]

Author: davidk
Date: 2012-08-27 16:58:26 -0500 (Mon, 27 Aug 2012)
New Revision: 5911

Modified:
   SwiftApps/CMTS/rmsd/conf/grotthuss.cf
   SwiftApps/CMTS/rmsd/conf/makena.cf
   SwiftApps/CMTS/rmsd/rmsd.sh
Log:
Execution retries should be enabled
Put a delay after renaming files for possible NFS issues


Modified: SwiftApps/CMTS/rmsd/conf/grotthuss.cf
===================================================================
--- SwiftApps/CMTS/rmsd/conf/grotthuss.cf	2012-08-27 17:21:52 UTC (rev 5910)
+++ SwiftApps/CMTS/rmsd/conf/grotthuss.cf	2012-08-27 21:58:26 UTC (rev 5911)
@@ -1,6 +1,6 @@
 wrapperlog.always.transfer=true
 sitedir.keep=true
-execution.retries=0
+execution.retries=10
 lazy.errors=true
 status.mode=provider
 use.provider.staging=false

Modified: SwiftApps/CMTS/rmsd/conf/makena.cf
===================================================================
--- SwiftApps/CMTS/rmsd/conf/makena.cf	2012-08-27 17:21:52 UTC (rev 5910)
+++ SwiftApps/CMTS/rmsd/conf/makena.cf	2012-08-27 21:58:26 UTC (rev 5911)
@@ -1,6 +1,6 @@
 wrapperlog.always.transfer=true
 sitedir.keep=true
-execution.retries=0
+execution.retries=10
 lazy.errors=true
 status.mode=provider
 use.provider.staging=false

Modified: SwiftApps/CMTS/rmsd/rmsd.sh
===================================================================
--- SwiftApps/CMTS/rmsd/rmsd.sh	2012-08-27 17:21:52 UTC (rev 5910)
+++ SwiftApps/CMTS/rmsd/rmsd.sh	2012-08-27 21:58:26 UTC (rev 5911)
@@ -18,3 +18,4 @@
 
 mv output/cg_clath_cage.dcd output/cg_clath_cage-$b1-$b2.dcd
 mv rmsd.dat output/rmsd.$b1name${b1}_$b2name${b2}.dat
+sleep 5