[Swift-commit] r5102 - in SwiftApps/SwiftR: . Swift/exec

[tga at ci.uchicago.edu]

Author: tga
Date: 2011-09-12 12:29:10 -0500 (Mon, 12 Sep 2011)
New Revision: 5102

Modified:
   SwiftApps/SwiftR/IMMEDIATE-TODO
   SwiftApps/SwiftR/Swift/exec/start-swift
Log:

Now works correctly on crayxt with recompiled R.  Fixed node count--This line, and those below, will be ignored--

M    IMMEDIATE-TODO
M    Swift/exec/start-swift


Modified: SwiftApps/SwiftR/IMMEDIATE-TODO
===================================================================
--- SwiftApps/SwiftR/IMMEDIATE-TODO	2011-09-09 22:53:01 UTC (rev 5101)
+++ SwiftApps/SwiftR/IMMEDIATE-TODO	2011-09-12 17:29:10 UTC (rev 5102)
@@ -3,18 +3,9 @@
 - ParallelCI and ParallelBoostrap benchmarks
 - smaller focused micro-tests to create plots of speed vs param size and efficiency vs runtime of the evaluated function.
 
+HIGH:
+-- OpenMx Benchmarking on Beagle
 
-
-VERY HIGH:
--- get working on beagle.
--- Debug Ideas:
-    - Minimal C program which causes issues
-        * Pthreads + forking
-    - Compile R with symbols and stack trace
-    - Cray debugging tools
-    - Might be something that happens at link time:
-        startup code for one of libraries
-
 HIGH:
 -- sometimes the server crashes after servicing first request(
     only observed when running locally and on sge)

Modified: SwiftApps/SwiftR/Swift/exec/start-swift
===================================================================
--- SwiftApps/SwiftR/Swift/exec/start-swift	2011-09-09 22:53:01 UTC (rev 5101)
+++ SwiftApps/SwiftR/Swift/exec/start-swift	2011-09-12 17:29:10 UTC (rev 5102)
@@ -213,7 +213,7 @@
 cat > $SUBMIT_FILE <<END
 #PBS -S /bin/sh
 #PBS -N SwiftR-workers
-#PBS -l mppwidth=$(($nodes*$cores))
+#PBS -l mppwidth=$(($nodes))
 #PBS -l mppnppn=1
 #PBS -l mppdepth=$cores
 #PBS -l walltime=$time
@@ -226,7 +226,7 @@
 
 #TODO: lustre working directory?
 
-aprun -B -F exclusive -cc none \
+aprun -B \
     /usr/bin/perl $SWIFTBIN/worker.pl $CONTACT SwiftR $HOME/.globus/coasters $IDLETIMEOUT
 
 END