[Swift-commit] r4061 - SwiftApps/SwiftR

[noreply at svn.ci.uchicago.edu]

Author: tga
Date: 2011-02-04 12:42:48 -0600 (Fri, 04 Feb 2011)
New Revision: 4061

Modified:
   SwiftApps/SwiftR/IMMEDIATE-TODO
Log:
Checking in notes from OpenMx meeting about potential benchmarks.


Modified: SwiftApps/SwiftR/IMMEDIATE-TODO
===================================================================
--- SwiftApps/SwiftR/IMMEDIATE-TODO	2011-02-04 18:08:57 UTC (rev 4060)
+++ SwiftApps/SwiftR/IMMEDIATE-TODO	2011-02-04 18:42:48 UTC (rev 4061)
@@ -1,4 +1,35 @@
+1) swift bcast if exportAll files/data and/or xmit this via prov staging w/ caching of duplicates
 
+2) Fast branch: working? faster?
+
+3) speed: where is bottleneck?  how to measure and tune?
+- ParallelCI and ParallelBoostrap benchmarks
+- smaller focused micro-tests to create plots of speed vs param size and efficiency vs runtime of the evaluated function.
+
+4) SGE:
+- test in IBI
+- test on Ranger
+- get this to Tim Bates to test on Eddie ()
+
+5) Timing: dramatic bencmark results for new proposal.
+
+
+VERY HIGH:
+-- Benchmarks for grant app - grant app is due 21 Feb
+-- New results by around 11 Feb
+    - Synthetic benchmark
+    - Parallel bootstrap
+    - Parallel CI
+    - smaller focused micro-tests to create plots of speed vs param size and efficiency vs runtime of the evaluated function.
+    - Sarah Kenny FMRI
+    - parallel OpenMx Tests
+-- Candidate systems:
+ - Eureka/cobalt 
+ - Beagle? (Prelim: crays crow)
+ - Sicortex (prob. not)
+ - BG/P
+-- Benchmarks on average user machines
+
 HIGH:
 -- Test pbsf (on PADS?)