[Swift-commit] r5397 - in wwwdev: inc papers
davidk at ci.uchicago.edu
davidk at ci.uchicago.edu
Fri Dec 9 13:27:56 CST 2011
Author: davidk
Date: 2011-12-09 13:27:56 -0600 (Fri, 09 Dec 2011)
New Revision: 5397
Added:
wwwdev/papers/sciencegateway.pdf
Modified:
wwwdev/inc/papers_sidebar.php
wwwdev/papers/index.php
Log:
Sort papers by date, update paper sidebar highlights
Modified: wwwdev/inc/papers_sidebar.php
===================================================================
--- wwwdev/inc/papers_sidebar.php 2011-12-09 18:43:31 UTC (rev 5396)
+++ wwwdev/inc/papers_sidebar.php 2011-12-09 19:27:56 UTC (rev 5397)
@@ -1,16 +1,17 @@
<h3>Highlights</h3>
+
<h4>Technology</h4>
+<p><em>Swift: A language for distributed parallel scripting (2011)</em> [<a href="../papers/SwiftLanguageForDistributedParallelScripting.pdf" target="_blank">pdf</a>]</p><br />
<p><em>Parallel Scripting for Applications at the Petascale and Beyond (2009)</em> [<a href="../papers/SwiftParallelScripting.pdf" target="_blank">pdf</a>]</p><br />
-<p><em>A Notation and System for Expressing and Executing Cleanly Typed Workflows on Messy Scientific Data (2005)</em> [<a href="http://people.cs.uchicago.edu/~yongzh/pub/sigmod-swf-vdl.pdf" target="_blank">pdf</a>]</p><br />
-<p><em>XDTM: XML Data Type and Mapping for Specifying Datasets (2005)</em> [<a href="XDTM_egc05.pdf" target="_blank">pdf</a>] </p><br />
-<p><em>The Virtual Data Grid: A New Model and Architecture for Data-Intensive Collaboration (2003)</em> [<a href="http://www-db.cs.wisc.edu/cidr/cidr2003/program/p18.pdf">pdf</a>] </p><br />
-<p><em>Falkon: a Fast and Light-weight tasK executiON framework (2007)</em> [<a href="Falkon_SC07_v24.pdf">pdf</a>] </p><br />
-<p><em>Swift: Fast, Reliable, Loosely Coupled Parallel Computation (2007)</em> [<a href="Swift-SWF07.pdf">pdf</a>] </p><br />
+<p><em>Coasters: uniform resource provisioning and access for clouds and grids (2011)</em> [<a href="../papers/UCC-coasters.pdf" target="_blank">pdf</a>]</p><br />
+<p><em>A solution looking for lots of problems: Generic Portals for Science Infrastructure (2011)</em> [<a href="../papers/tg2011_portal.pdf" target="_blank">pdf</a>]</p><br />
+<p><em>Accelerating Science Gateway Development with Web 2.0 and Swift (2010)</em> [<a href="../papers/sciencegateway.pdf" target="_blank">pdf</a>]</p><br />
+<p><em>Integrating Task Parallelism into the Python Programming Language (2011)</em> [<a href="../papers/armstrong-masters.pdf" target="_blank">pdf</a>]</p><br />
<h4>Applications</h4>
-<p><em>Accelerating Medical Research using the Swift Workflow System (2007)</em> [<a href="HealthGrid-2007-VDL2Bric.submitted-revised.pdf" target="_blank">pdf</a>]</p><br />
-<p><em>
-The QuarkNet/Grid Collaborative Learning e-Lab (2006)</em> [<a href="http://quarknet.fnal.gov/talks/clag_paper.pdf" target="_blank">pdf</a>]</p><br />
-<p><em>Using Multiple Grid Resources for Bioinformatics Applications in GADU (2006)</em> [<a href="http://csdl2.computer.org/persagen/DLAbsToc.jsp?resourcePath=/dl/proceedings/&toc=comp/proceedings/ccgrid/2006/2585/02/2585toc.xml&DOI=10.1109/CCGRID.2006.182 -- Applications in bioinformatics" target="_blank">pdf</a>] </p>
+<p><em>Design and Implementation of ‘Many Parallel Task’ Hybrid Subsurface Model (2011)</em> [<a href="../papers/subsurface.pdf" target="_blank">pdf</a>]</p><br />
+<p><em>OpenMx: An Open Source Extended Structural Equation Modeling Framework (2011)</em> [<a href="../papers/openmx.pdf" target="_blank">pdf</a>]</p><br />
+<p><em>Modeling large regions in proteins: Applications to loops, termini, and folding (2011)</em> [<a href="../papers/767_fta.pdf" target="_blank">pdf</a>]</p><br />
+<p><em>Parallel High-resolution Climate Data Analysis using Swift (2011)</em> [<a href="../papers/highresclimatedata.pdf" target="_blank">pdf</a>]</p><br />
Modified: wwwdev/papers/index.php
===================================================================
--- wwwdev/papers/index.php 2011-12-09 18:43:31 UTC (rev 5396)
+++ wwwdev/papers/index.php 2011-12-09 19:27:56 UTC (rev 5397)
@@ -29,7 +29,7 @@
<span class="authors">Mihael Hategan, Justin Wozniak, Ketan Maheshwari</span>
<span class="title">Coasters: uniform resource provisioning and access for clouds and grids</span>
<span class="source">4th IEEE/ACM International Conference on Utility and Cloud Computing</span>
- <span class="date">2011</span>
+ <span class="date">2011.</span>
[ <a href="UCC-coasters.pdf">pdf</a> ]
</div>
@@ -37,76 +37,26 @@
<span class="authors">Michael Wilde, Mihael Hategan, Justin M. Wozniak, Ben Clifford, Daniel S. Katz, Ian Foster</span>
<span class="title">Swift: A language for distributed parallel scripting</span>
<span class="source">Parallel Computing</span>
- <span class="date">2011</span>
+ <span class="date">2011.</span>
[ <a href="SwiftLanguageForDistributedParallelScripting.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Joe DeBartolo, Glen Hocky, Michael Wilde, Jinbo Xu, Karl F. Freed, and Tobin R. Sosnick</span>
- <span class="title">Protein Structure Prediction Enhanced with Evolutionary Diversity: SPEED</span>
- <span class="source">Protein Science Journal</span>
- <span class="date">Jan 2010</span>
-</div>
-
-<div class="publication">
<span class="authors">Michael Wilde, Ian Foster, Kamil Iskra, Pete Beckman, Zhao Zhang, Allan Espinosa, Mihael Hategan, Ben Clifford, Ioan Raicu</span>
<span class="title">Parallel Scripting for Applications at the Petascale and Beyond</span>
<span class="source">Computer, Vol. 42, No. 11</span>
- <span class="date">2009</span>
+ <span class="date">2009.</span>
[ <a href="SwiftParallelScripting.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Andriy Fedorov, Benjamin Clifford, Simon K. Warfield, Ron Kikinis, Nikos Chrisochoides
-</span>
- <span class="title">Non-Rigid Registration for Image-Guided Neurosurgery on the TeraGrid: A Case Study
-</span>
- <span class="source">College of William and Mary Technical Report</span>
- <span class="date">2009</span>
- [ <a href="http://www.wm.edu/as/computerscience/documents/cstechreports/WM-CS-2009-05.pdf">pdf</a> ]
-</div>
-
-<div class="publication">
- <span class="authors">Stef-Praun, T., Madeira, G., Foster, I., and Townsend, R.</span>
- <span class="title">Accelerating solution of a moral hazard problem with Swift</span>
- <span class="source">e-Social Science</span>
- <span class="date">2007</span>
- [ <a href="SwiftForSocialSciences-2007.pdf">pdf</a> ]
-</div>
-
-<div class="publication">
- <span class="authors">Stef-Praun, T., Clifford, B., Foster, I., Hasson, U., Hategan, M., Small, S., Wilde, M and Zhao,Y.</span>
- <span class="title">Accelerating Medical Research using the Swift Workflow System</span>
- <span class="source">Health Grid</span>
- <span class="date">2007</span>
- [ <a href="HealthGrid-2007-VDL2Bric.submitted-revised.pdf">pdf</a> ]
-</div>
-
-<div class="publication">
<span class="authors">Zhao Y., Hategan, M., Clifford, B., Foster, I., vonLaszewski, G., Raicu, I., Stef-Praun, T. and Wilde, M</span>
<span class="title">Swift: Fast, Reliable, Loosely Coupled Parallel Computation</span>
<span class="source">IEEE International Workshop on Scientific Workflows</span>
- <span class="date">2007</span>
+ <span class="date">2007.</span>
[ <a href="Swift-SWF07.pdf">pdf</a> ]
</div>
-<div class="publication">
- <span class="authors">Raicu, I., Zhao Y., Dumitrescu, C., Foster, I. and Wilde, M</span>
- <span class="title">Falkon: a Fast and Light-weight tasK executiON framework </span>
- <span class="source">Supercomputing Conference</span>
- <span class="date">2007</span>
- [ <a href="Falkon_SC07_v24.pdf">pdf</a> ]
-</div>
-
-
-<div class="publication">
- <span class="authors">Zhao, Y.,Dobson, J., Moreau, L., Foster, I. and Wilde, M</span>
- <span class="title">A Notation and System for Expressing and Executing Cleanly Typed Workflows on Messy Scientific Data</span>
- <span class="source">SIGMOD</span>
- <span class="date">2005</span>
- [ <a href="sigmod-swf-vdl.pdf">pdf</a> ]
-</div>
-
<p> </p>
<h3>Research Leading up to Swift</h3>
@@ -114,44 +64,11 @@
<span class="authors">Zhao, Y., Wilde, M. and Foster, I.</span>
<span class="title">Virtual Data Language: A Typed Workflow Notation for Diversely Structured Scientific Data.</span>
<span class="source">Taylor, I.J., Deelman, E., Gannon, D.B. and Shields, M. eds. Workflows for eScience, Springer,</span>
- <span class="date">2007,</span>
+ <span class="date">2007.</span>
<span class="pages">258-278.</span>
</div>
<div class="publication">
- <span class="authors">Zhao, Y., Dobson, J., Foster, I., Moreau, L. and Wilde, M.</span>
- <span class="title">A Notation and System for Expressing and Executing Cleanly Typed Workflows on Messy Scientific Data.</span>
- <span class="source">SIGMOD Record 34 (3),</span>
- <span class="pages">37-43</span>
- [ <a href="p37-special-sw-section-6.pdf">pdf</a> ]
-</div>
-
-<div class="publication">
- <span class="authors">Moreau, L., Zhao, Y., Foster, I., Voeckler, J. and Wilde, M.,</span>
- <span class="title">XDTM: XML Data Type and Mapping for Specifying Datasets.</span>
- <span class="source">European Grid Conference,</span>
- <span class="date">2005.</span>
- [ <a href="egc05.pdf">pdf</a> ]
-</div>
-
-<div class="publication">
- <span class="authors">Foster, I., Voeckler, J., Wilde, M. and Zhao, Y.,</span>
- <span class="title">The Virtual Data Grid: A New Model and Architecture for Data-Intensive Collaboration.</span>
- <span class="source">Conference on Innovative Data Systems Research,</span>
- <span class="date">2003.</span>
- [ <a href="ModelAndArchForDataCollab2003.pdf">pdf</a> ]
-</div>
-
-<div class="publication">
- <span class="authors">von Laszewski, G., Hategan, M. and Kodeboyina, D.</span>
- <span class="title">Java CoG Kit Workflow.</span>
- <span class="source">Taylor, I.J., Deelman, E., Gannon, D.B. and Shields, M. eds. Workflows for Science,</span>
- <span class="date">2007,</span>
- <span class="pages">340-356.</span>
- [ <a href="vonLaszewski-workflow-book.pdf">pdf</a> ]
-</div>
-
-<div class="publication">
<span class="authors">Zhao, Y., Wilde, M. and Foster, I.,</span>
<span class="title">Applying the Virtual Data Provenance Model.</span>
<span class="source">International Provenance and Annotation Workshop, Chicago, Illinois,</span>
@@ -168,6 +85,23 @@
</div>
<div class="publication">
+ <span class="authors">Zhao, Y., Dobson, J., Foster, I., Moreau, L. and Wilde, M.</span>
+ <span class="title">A Notation and System for Expressing and Executing Cleanly Typed Workflows on Messy Scientific Data.</span>
+ <span class="source">SIGMOD Record 34 (3)</span>
+ <span class="pages">37-43</span>
+ <span class="date">2005.</span>
+ [ <a href="p37-special-sw-section-6.pdf">pdf</a> ]
+</div>
+
+<div class="publication">
+ <span class="authors">Moreau, L., Zhao, Y., Foster, I., Voeckler, J. and Wilde, M.,</span>
+ <span class="title">XDTM: XML Data Type and Mapping for Specifying Datasets.</span>
+ <span class="source">European Grid Conference,</span>
+ <span class="date">2005.</span>
+ [ <a href="egc05.pdf">pdf</a> ]
+</div>
+
+<div class="publication">
<span class="authors">Zhao, Y., Wilde, M., Foster, I., Voeckler, J., Jordan, T., Quigg, E. and Dobson, J.,</span>
<span class="title">Grid Middleware Services for Virtual Data Discovery, Composition, and Integration.</span>
<span class="source">2nd International Workshop on Middleware for Grid Computing,</span>
@@ -175,7 +109,15 @@
[ <a href="p57-zhao.pdf">pdf</a> ]
</div>
+<div class="publication">
+ <span class="authors">Foster, I., Voeckler, J., Wilde, M. and Zhao, Y.,</span>
+ <span class="title">The Virtual Data Grid: A New Model and Architecture for Data-Intensive Collaboration.</span>
+ <span class="source">Conference on Innovative Data Systems Research,</span>
+ <span class="date">2003.</span>
+ [ <a href="ModelAndArchForDataCollab2003.pdf">pdf</a> ]
+</div>
+
<div class="publication">
<span class="authors">Foster, I., Voeckler, J., Wilde, M. and Zhao, Y.,</span>
<span class="title">Chimera: A Virtual Data System for Representing, Querying, and Automating Data Derivation.</span>
@@ -196,157 +138,207 @@
<span class="title">Virtual Data Grid Middleware Services for Data-intensive Science.</span>
<span class="source">Concurrency and Computation: Practice and Experience, 18 (6),</span>
<span class="pages">595-608.</span>
+ <span class="date">2000.</span>
[ <a href="cpe2000.pdf">pdf</a> ]
</div>
+<p> </p>
+<h3>Swift Applications</h3>
<div class="publication">
- <span class="authors">Nefedova, V., Jacob, R., Foster, I., Liu, Y., Liu, Z., Deelman, E., Mehta, G. and Vahi, K.,</span>
- <span class="title">Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data System.</span>
- <span class="source">2nd IEEE International Conference on eScience and Grid Computing,</span>
- <span class="date">2006.</span>
- [ <a href="AutomatingClimateScience.pdf">pdf</a> ]
+ <span class="authors">Agarwal, K., Chase, J., Schuchardt, K., Scheibe, T., Palmer, B., Elsethagen, T.</span>
+ <span class="title">Design and Implementation of ‘Many Parallel Task’ Hybrid Subsurface Model</span>
+ <span class="source">4th Workshop on Many-Task Computing on Grids and Supercomputers</span>
+ <span class="date">2011.</span>
+ [ <a href="subsurface.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Horn, J.V., Dobson, J., Woodward, J., Wilde, M., Zhao, Y., Voeckler, J. and Foster, I.</span>
- <span class="title">Grid-Based Computing and the Future of Neuroscience Computation.</span>
- <span class="source">Methods in Mind, MIT Press,</span>
- <span class="date">2006.</span>
+ <span class="authors">Armstrong, T.</span>
+ <span class="title">Integrating Task Parallelism into the Python Programming Language</span>
+ <span class="source">University of Chicago, Department of Computer Science</span>
+ <span class="date">May 2011</span>
+ [ <a href="armstrong-masters.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Sulakhe, D., Rodriguez, A., Wilde, M., Foster, I. and Maltsev, N.,</span>
- <span class="title">Using Multiple Grid Resources for Bioinformatics Applications in GADU.</span>
- <span class="source">IEEE/ACM International Symposium on Cluster Computing and Grid,</span>
- <span class="date">2006.</span>
- [ <a href="GridResourcesForGADU.pdf">pdf</a> ]
+ <span class="authors">Adhikari, A. Peng, J., Wilde, M., Xu, J., Freed, K., Sosnick, T.</span>
+ <span class="title">Modeling large regions in proteins: Applications to loops, termini, and folding</span>
+ <span class="source">Protein Science</span>
+ <span class="date">2011.</span>
+ [ <a href="767_fta.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Sulakhe, D., Rodriguez, A., D'Souza, M., Wilde, M., Nefedova, V., Foster, I. and Maltsev, N.</span>
- <span class="title">GNARE: An Environment for Grid-Based High-Throughput Genome Analysis.</span>
- <span class="source">Journal of Clinical Monitoring and Computing.</span>
- [ <a href="BioGrid2005.pdf">pdf</a> ]
+ <span class="authors">Adhikari, A. Peng, J., Wilde, M., Xu, J., Freed, K., Sosnick, T.</span>
+ <span class="title">Modeling large regions in proteins: Applications to loops, termini, and folding</span>
+ <span class="source">Protein Science</span>
+ <span class="date">2011.</span>
+ [ <a href="767_fta.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Arbree, A., Avery, P., Bourilkov, D., Cavanaugh, R., Katageri, S., Graham, G., Rodriguez, J., Voeckler, J. and Wilde, M.,</span>
- <span class="title">Virtual Data in CMS Production.</span>
- <span class="source">Computing in High Energy and Nuclear Physics,</span>
- <span class="date">2003.</span>
- [ <a href="VDS-CMS.pdf">pdf</a> ]
+ <span class="authors">Boker, S., Neale, M., Maes, H., Wilde, M., Spiegel, M., Brick, T., Spies, J., Estabrook, R., Kenny, S., Bates, T., et al.</span>
+ <span class="title">OpenMx: An Open Source Extended Structural Equation Modeling Framework</span>
+ <span class="source">Psychometrika - Vol. 76, No.2, 306-317</span>
+ <span class="date">April 2011</span>
+ [ <a href="openmx.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Arbree, A., Avery, P., Bourilkov, D., Cavanaugh, R., Rodriguez, J., Graham, G., Wilde, M. and Zhao, Y.,</span>
- <span class="title">Virtual Data in CMS Analysis.</span>
- <span class="source">Computing in High Energy and Nuclear Physics,</span>
- <span class="date">2003.</span>
- [ <a href="VirtualDataInCMS.pdf">pdf</a> ]
+ <span class="authors">Woitaszek, M., Dennis, J., Sines, T.</span>
+ <span class="title">Parallel High-resolution Climate Data Analysis using Swift.</span>
+ <span class="source">4th Workshop on Many-Task Computing on Grids and Supercomputers</span>
+ <span class="date">2011.</span>
+ [ <a href="highresclimatedata.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Annis, J., Zhao, Y., Voeckler, J., Wilde, M., Kent, S. and Foster, I.,</span>
- <span class="title">Applying Chimera Virtual Data Concepts to Cluster Finding in the Sloan Sky Survey.</span>
- <span class="source">SC2002, Baltimore, MD,</span>
- <span class="date">2002.</span>
- [ <a href="SSDS-SC02.pdf">pdf</a> ]
+ <span class="authors">Joe DeBartolo, Glen Hocky, Michael Wilde, Jinbo Xu, Karl F. Freed, and Tobin R. Sosnick</span>
+ <span class="title">Protein Structure Prediction Enhanced with Evolutionary Diversity: SPEED</span>
+ <span class="source">Protein Science Journal</span>
+ <span class="date">Jan 2010</span>
</div>
<div class="publication">
- <span class="authors">Bardeen, M., Gilbert, E., Jordan, T., Nepywoda, P., Quigg, E., Wilde, M. and Zhao, Y.</span>
- <span class="title">The QuarkNet/Grid Collaborative Learning e-Lab.</span>
- <span class="source">Future Generation Computer Systems, 22 (6),</span>
- <span class="pages">700-708.</span>
- [ <a href="clag_paper.pdf">pdf</a> ]
+ <span class="authors">Uram, T., Papka, M., Herald, M., Wilde, M.</span>
+ <span class="title">A solution looking for lots of problems: Generic Portals for Science Infrastructure</span>
+ <span class="source">Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery </span>
+ <span class="date">2011.</span>
+ [ <a href="tg2011_portal.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Zhao, Y.</span>
- <span class="title">Virtual Galaxy Clusters: An Application of the GriPhyN Virtual Data Toolkit to Sloan Digital Sky Survey Data.</span>
- <span class="source">MS thesis, University of Chicago, GriPhyN-2002-06,</span>
- <span class="date">2002.</span>
+ <span class="authors">Wu, W., Uram, T., Wilde, M., Herald, M., Papka, M.</span>
+ <span class="title">Accelerating Science Gateway Development with Web 2.0 and Swift</span>
+ <span class="source">TG 10 - Proceedings of the 2010 TeraGrid Conference </span>
+ <span class="date">2010.</span>
+ [ <a href="sciencegateway.pdf">pdf</a> ]
</div>
-<p> </p>
-<h3>Swift Applications</h3>
<div class="publication">
- <span class="authors">Woitaszek, M., Dennis, J., Sines, T.</span>
- <span class="title">Parallel High-resolution Climate Data Analysis using Swift.</span>
- <span class="source">4th Workshop on Many-Task Computing on Grids and Supercomputers</span>
- <span class="date">2011</span>
- [ <a href="highresclimatedata.pdf">pdf</a> ]
+ <span class="authors">Andriy Fedorov, Benjamin Clifford, Simon K. Warfield, Ron Kikinis, Nikos Chrisochoides</span>
+ <span class="title">Non-Rigid Registration for Image-Guided Neurosurgery on the TeraGrid: A Case Study </span>
+ <span class="source">College of William and Mary Technical Report</span>
+ <span class="date">2009.</span>
+ [ <a href="http://www.wm.edu/as/computerscience/documents/cstechreports/WM-CS-2009-05.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Agarwal, K., Chase, J., Schuchardt, K., Scheibe, T., Palmer, B., Elsethagen, T.</span>
- <span class="title">Design and Implementation of ‘Many Parallel Task’ Hybrid Subsurface Model</span>
- <span class="source">4th Workshop on Many-Task Computing on Grids and Supercomputers</span>
- <span class="date">2011</span>
- [ <a href="subsurface.pdf">pdf</a> ]
+ <span class="authors">Stef-Praun, T., Clifford, B., Foster, I., Hasson, U., Hategan, M., Small, S., Wilde, M and Zhao,Y.</span>
+ <span class="title">Accelerating Medical Research using the Swift Workflow System</span>
+ <span class="source">Health Grid</span>
+ <span class="date">2007.</span>
+ [ <a href="HealthGrid-2007-VDL2Bric.submitted-revised.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Adhikari, A. Peng, J., Wilde, M., Xu, J., Freed, K., Sosnick, T.</span>
- <span class="title">Modeling large regions in proteins: Applications to loops, termini, and folding</span>
- <span class="source">Protein Science</span>
- <span class="date">2011</span>
- [ <a href="767_fta.pdf">pdf</a> ]
+ <span class="authors">Stef-Praun, T., Madeira, G., Foster, I., and Townsend, R.</span>
+ <span class="title">Accelerating solution of a moral hazard problem with Swift</span>
+ <span class="source">e-Social Science</span>
+ <span class="date">2007.</span>
+ [ <a href="SwiftForSocialSciences-2007.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Adhikari, A. Peng, J., Wilde, M., Xu, J., Freed, K., Sosnick, T.</span>
- <span class="title">Modeling large regions in proteins: Applications to loops, termini, and folding</span>
- <span class="source">Protein Science</span>
- <span class="date">2011</span>
- [ <a href="767_fta.pdf">pdf</a> ]
+ <span class="authors">Nefedova, V., Jacob, R., Foster, I., Liu, Y., Liu, Z., Deelman, E., Mehta, G. and Vahi, K.,</span>
+ <span class="title">Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data System.</span>
+ <span class="source">2nd IEEE International Conference on eScience and Grid Computing,</span>
+ <span class="date">2006.</span>
+ [ <a href="AutomatingClimateScience.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Boker, S., Neale, M., Maes, H., Wilde, M., Spiegel, M., Brick, T., Spies, J., Estabrook, R., Kenny, S., Bates, T., et al.</span>
- <span class="title">OpenMx: An Open Source Extended Structural Equation Modeling Framework</span>
- <span class="source">Psychometrika - Vol. 76, No.2, 306-317</span>
- <span class="date">April 2011</span>
- [ <a href="openmx.pdf">pdf</a> ]
+ <span class="authors">Horn, J.V., Dobson, J., Woodward, J., Wilde, M., Zhao, Y., Voeckler, J. and Foster, I.</span>
+ <span class="title">Grid-Based Computing and the Future of Neuroscience Computation.</span>
+ <span class="source">Methods in Mind, MIT Press,</span>
+ <span class="date">2006.</span>
</div>
<div class="publication">
- <span class="authors">Uram, T., Papka, M., Herald, M., Wilde, M.</span>
- <span class="title">A solution looking for lots of problems: Generic Portals for Science Infrastructure</span>
- <span class="source">Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery </span>
- <span class="date">2011</span>
- [ <a href="tg2011_portal.pdf">pdf</a> ]
+ <span class="authors">Sulakhe, D., Rodriguez, A., Wilde, M., Foster, I. and Maltsev, N.,</span>
+ <span class="title">Using Multiple Grid Resources for Bioinformatics Applications in GADU.</span>
+ <span class="source">IEEE/ACM International Symposium on Cluster Computing and Grid,</span>
+ <span class="date">2006.</span>
+ [ <a href="GridResourcesForGADU.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Wu, W., Uram, T., Wilde, M., Herald, M., Papka, M.</span>
- <span class="title">Accelerating Science Gateway Development with Web 2.0 and Swift</span>
- <span class="source">TG 10 - Proceedings of the 2010 TeraGrid Conference </span>
- <span class="date">2010</span>
- [ <a href="sciencegateway.pdf">pdf</a> ]
+ <span class="authors">Sulakhe, D., Rodriguez, A., D'Souza, M., Wilde, M., Nefedova, V., Foster, I. and Maltsev, N.</span>
+ <span class="title">GNARE: An Environment for Grid-Based High-Throughput Genome Analysis.</span>
+ <span class="source">Journal of Clinical Monitoring and Computing.</span>
+ <span class="date">2005.</span>
+ [ <a href="BioGrid2005.pdf">pdf</a> ]
</div>
<div class="publication">
- <span class="authors">Armstrong, T.</span>
- <span class="title">Integrating Task Parallelism into the Python Programming Language</span>
- <span class="source">University of Chicago, Department of Computer Science</span>
- <span class="date">May, 2011</span>
- [ <a href="armstrong-masters.pdf">pdf</a> ]
+ <span class="authors">Bardeen, M., Gilbert, E., Jordan, T., Nepywoda, P., Quigg, E., Wilde, M. and Zhao, Y.</span>
+ <span class="title">The QuarkNet/Grid Collaborative Learning e-Lab.</span>
+ <span class="source">Future Generation Computer Systems, 22 (6),</span>
+ <span class="pages">700-708.</span>
+ <span class="date">2005.</span>
+ [ <a href="clag_paper.pdf">pdf</a> ]
</div>
+<div class="publication">
+ <span class="authors">Arbree, A., Avery, P., Bourilkov, D., Cavanaugh, R., Rodriguez, J., Graham, G., Wilde, M. and Zhao, Y.,</span>
+ <span class="title">Virtual Data in CMS Analysis.</span>
+ <span class="source">Computing in High Energy and Nuclear Physics,</span>
+ <span class="date">2003.</span>
+ [ <a href="VirtualDataInCMS.pdf">pdf</a> ]
+</div>
+
+<div class="publication">
+ <span class="authors">Arbree, A., Avery, P., Bourilkov, D., Cavanaugh, R., Katageri, S., Graham, G., Rodriguez, J., Voeckler, J. and Wilde, M.,</span>
+ <span class="title">Virtual Data in CMS Production.</span>
+ <span class="source">Computing in High Energy and Nuclear Physics,</span>
+ <span class="date">2003.</span>
+ [ <a href="VDS-CMS.pdf">pdf</a> ]
+</div>
+
+<div class="publication">
+ <span class="authors">Annis, J., Zhao, Y., Voeckler, J., Wilde, M., Kent, S. and Foster, I.,</span>
+ <span class="title">Applying Chimera Virtual Data Concepts to Cluster Finding in the Sloan Sky Survey.</span>
+ <span class="source">SC2002, Baltimore, MD,</span>
+ <span class="date">2002.</span>
+ [ <a href="SSDS-SC02.pdf">pdf</a> ]
+</div>
+
+<div class="publication">
+ <span class="authors">Zhao, Y.</span>
+ <span class="title">Virtual Galaxy Clusters: An Application of the GriPhyN Virtual Data Toolkit to Sloan Digital Sky Survey Data.</span>
+ <span class="source">MS thesis, University of Chicago, GriPhyN-2002-06,</span>
+ <span class="date">2002.</span>
+</div>
<p> </p>
<h3>Related Research</h3>
<div class="publication">
- <span class="authors">Malewicz, G., Foster, I., Rosenberg, A. and Wilde, M.,</span>
- <span class="title">A Tool for Prioritizing DAGMan Jobs and Its Evaluation.</span>
- <span class="source">IEEE International Symposium on High Performance Distributed Computing,</span>
- <span class="date">2006.</span>
- [ <a href="jogc_03.pdf">pdf</a> ]
+ <span class="authors">Moreau, L. and others,</span>
+ <span class="title">The First Provenance Challenge,</span>
+ <span class="source">Concurrency and Computation: Practice and Experience.</span>
+ <span class="date">2008.</span>
+ [ <a href="challenge-editorial.pdf">pdf</a> ]
</div>
<div class="publication">
+ <span class="authors">Raicu, I., Zhao Y., Dumitrescu, C., Foster, I. and Wilde, M</span>
+ <span class="title">Falkon: a Fast and Light-weight tasK executiON framework </span>
+ <span class="source">Supercomputing Conference</span>
+ <span class="date">2007.</span>
+ [ <a href="Falkon_SC07_v24.pdf">pdf</a> ]
+</div>
+
+<div class="publication">
+ <span class="authors">von Laszewski, G., Hategan, M. and Kodeboyina, D.</span>
+ <span class="title">Java CoG Kit Workflow.</span>
+ <span class="source">Taylor, I.J., Deelman, E., Gannon, D.B. and Shields, M. eds. Workflows for Science,</span>
+ <span class="date">2007.</span>
+ <span class="pages">340-356.</span>
+ [ <a href="vonLaszewski-workflow-book.pdf">pdf</a> ]
+</div>
+
+<div class="publication">
<span class="authors">Meyer, L., Scheftner, D., Voeckler, J., Mattoso, M., Wilde, M. and Foster, I.,</span>
<span class="title">An Opportunistic Algorithm for Scheduling Workflows on Grids.</span>
<span class="source">VECPAR'06, Rio De Janiero,</span>
@@ -355,11 +347,13 @@
</div>
<div class="publication">
- <span class="authors">Moreau, L. and others,</span>
- <span class="title">The First Provenance Challenge,</span>
- <span class="source">Concurrency and Computation: Practice and Experience.</span>
- [ <a href="challenge-editorial.pdf">pdf</a> ]
+ <span class="authors">Malewicz, G., Foster, I., Rosenberg, A. and Wilde, M.,</span>
+ <span class="title">A Tool for Prioritizing DAGMan Jobs and Its Evaluation.</span>
+ <span class="source">IEEE International Symposium on High Performance Distributed Computing,</span>
+ <span class="date">2006.</span>
+ [ <a href="jogc_03.pdf">pdf</a> ]
</div>
+
<p> </p>
</div>
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