[Swift-commit] r4340 - SwiftApps/SwiftR/Swift/exec

[tga at ci.uchicago.edu]

Author: tga
Date: 2011-04-12 10:56:42 -0500 (Tue, 12 Apr 2011)
New Revision: 4340

Modified:
   SwiftApps/SwiftR/Swift/exec/configure-server-cobalt
   SwiftApps/SwiftR/Swift/exec/configure-server-crayxt
   SwiftApps/SwiftR/Swift/exec/configure-server-local
   SwiftApps/SwiftR/Swift/exec/configure-server-pbs
   SwiftApps/SwiftR/Swift/exec/configure-server-pbsauto
   SwiftApps/SwiftR/Swift/exec/configure-server-sge
   SwiftApps/SwiftR/Swift/exec/configure-server-ssh
Log:
Pass R_LIBS_USER env var to worker.


Modified: SwiftApps/SwiftR/Swift/exec/configure-server-cobalt
===================================================================
--- SwiftApps/SwiftR/Swift/exec/configure-server-cobalt	2011-04-12 15:34:22 UTC (rev 4339)
+++ SwiftApps/SwiftR/Swift/exec/configure-server-cobalt	2011-04-12 15:56:42 UTC (rev 4340)
@@ -28,6 +28,7 @@
     <profile namespace="globus" key="workersPerNode">$cores</profile>
     <profile namespace="karajan" key="jobThrottle">$throttle</profile>
     <profile namespace="karajan" key="initialScore">10000</profile>
+    <profile namespace="env" key="R_LIBS_USER">$R_LIBS_USER</profile>
     <filesystem provider="local" url="none"/>
     <workdirectory>$(pwd)/swiftwork</workdirectory>
     <scratch>$(pwd)/swiftscratch</scratch>

Modified: SwiftApps/SwiftR/Swift/exec/configure-server-crayxt
===================================================================
--- SwiftApps/SwiftR/Swift/exec/configure-server-crayxt	2011-04-12 15:34:22 UTC (rev 4339)
+++ SwiftApps/SwiftR/Swift/exec/configure-server-crayxt	2011-04-12 15:56:42 UTC (rev 4340)
@@ -37,6 +37,7 @@
     <profile namespace="env" key="SWIFTR_TMP">$LUSTRE_TMP</profile>
     <profile namespace="env" key="TMP">$LUSTRE_TMP</profile>
     <profile namespace="env" key="LD_LIBRARY_PATH">$LD_LIBRARY_PATH</profile>
+    <profile namespace="env" key="R_LIBS_USER">$R_LIBS_USER</profile>
     <workdirectory>$LUSTRE_TMP/swiftwork</workdirectory>
     <scratch>$LUSTRE_TMP/swiftscratch</scratch>
   </pool>

Modified: SwiftApps/SwiftR/Swift/exec/configure-server-local
===================================================================
--- SwiftApps/SwiftR/Swift/exec/configure-server-local	2011-04-12 15:34:22 UTC (rev 4339)
+++ SwiftApps/SwiftR/Swift/exec/configure-server-local	2011-04-12 15:56:42 UTC (rev 4340)
@@ -25,6 +25,8 @@
     <profile key="jobThrottle" namespace="karajan">0.15</profile>
     <profile namespace="karajan" key="initialScore">10000</profile>
     <filesystem provider="local" url="none" />
+    <profile namespace="env" key="LD_LIBRARY_PATH">$LD_LIBRARY_PATH</profile>
+    <profile namespace="env" key="R_LIBS_USER">$R_LIBS_USER</profile>
     <workdirectory>$(pwd)/swiftwork</workdirectory>
   </pool>
 END
@@ -45,6 +47,7 @@
     <profile key="jobThrottle" namespace="karajan">$throttleOneCore</profile>
     <profile namespace="karajan" key="initialScore">10000</profile>
     <profile namespace="env" key="LD_LIBRARY_PATH">$LD_LIBRARY_PATH</profile>
+    <profile namespace="env" key="R_LIBS_USER">$R_LIBS_USER</profile>
     <filesystem provider="local" url="none" />
     <workdirectory>$(pwd)/swiftwork</workdirectory>
   </pool>

Modified: SwiftApps/SwiftR/Swift/exec/configure-server-pbs
===================================================================
--- SwiftApps/SwiftR/Swift/exec/configure-server-pbs	2011-04-12 15:34:22 UTC (rev 4339)
+++ SwiftApps/SwiftR/Swift/exec/configure-server-pbs	2011-04-12 15:56:42 UTC (rev 4340)
@@ -22,6 +22,7 @@
     <profile key="jobThrottle" namespace="karajan">0.15</profile>
     <profile namespace="karajan" key="initialScore">10000</profile>
     <filesystem provider="local" url="none" />
+    <profile namespace="env" key="R_LIBS_USER">$R_LIBS_USER</profile>
     <workdirectory>$(pwd)/swiftwork</workdirectory>
   </pool>
 
@@ -32,6 +33,7 @@
     <profile namespace="karajan" key="jobThrottle">$throttlePBS</profile>
     <profile namespace="karajan" key="initialScore">10000</profile>
     <filesystem provider="local" url="none"/>
+    <profile namespace="env" key="R_LIBS_USER">$R_LIBS_USER</profile>
     <workdirectory>$(pwd)/swiftwork</workdirectory>
     <scratch>$(pwd)/swiftscratch</scratch>
   </pool>

Modified: SwiftApps/SwiftR/Swift/exec/configure-server-pbsauto
===================================================================
--- SwiftApps/SwiftR/Swift/exec/configure-server-pbsauto	2011-04-12 15:34:22 UTC (rev 4339)
+++ SwiftApps/SwiftR/Swift/exec/configure-server-pbsauto	2011-04-12 15:56:42 UTC (rev 4340)
@@ -14,6 +14,7 @@
     <profile key="jobThrottle" namespace="karajan">0.15</profile>
     <profile namespace="karajan" key="initialScore">10000</profile>
     <filesystem provider="local" url="none" />
+    <profile namespace="env" key="R_LIBS_USER">$R_LIBS_USER</profile>
     <workdirectory>$(pwd)/swiftwork</workdirectory>
   </pool>
 
@@ -24,6 +25,7 @@
     <profile key="jobThrottle" namespace="karajan">$throttlePBS</profile>
     <profile namespace="karajan" key="initialScore">10000</profile>
     <filesystem provider="local" url="none" />
+    <profile namespace="env" key="R_LIBS_USER">$R_LIBS_USER</profile>
     <workdirectory>$HOME/swiftwork</workdirectory>
   </pool>
 

Modified: SwiftApps/SwiftR/Swift/exec/configure-server-sge
===================================================================
--- SwiftApps/SwiftR/Swift/exec/configure-server-sge	2011-04-12 15:34:22 UTC (rev 4339)
+++ SwiftApps/SwiftR/Swift/exec/configure-server-sge	2011-04-12 15:56:42 UTC (rev 4340)
@@ -20,6 +20,7 @@
     <profile key="jobThrottle" namespace="karajan">0.15</profile>
     <profile namespace="karajan" key="initialScore">10000</profile>
     <filesystem provider="local" url="none" />
+    <profile namespace="env" key="R_LIBS_USER">$R_LIBS_USER</profile>
     <workdirectory>$(pwd)/swiftwork</workdirectory>
     <profile namespace="swift" key="stagingMethod">file</profile>
   </pool>

Modified: SwiftApps/SwiftR/Swift/exec/configure-server-ssh
===================================================================
--- SwiftApps/SwiftR/Swift/exec/configure-server-ssh	2011-04-12 15:34:22 UTC (rev 4339)
+++ SwiftApps/SwiftR/Swift/exec/configure-server-ssh	2011-04-12 15:56:42 UTC (rev 4340)
@@ -16,6 +16,7 @@
     <execution provider="local" url="none" />
     <profile key="jobThrottle" namespace="karajan">0.15</profile>
     <profile namespace="karajan" key="initialScore">10000</profile>
+    <profile namespace="env" key="R_LIBS_USER">$R_LIBS_USER</profile>
     <filesystem provider="local" url="none" />
     <workdirectory>$(pwd)/swiftwork</workdirectory>
   </pool>