[Swift-commit] r4279 - in SwiftApps/modFTdock: . app

[ketan at ci.uchicago.edu]

Author: ketan
Date: 2011-04-05 13:23:32 -0500 (Tue, 05 Apr 2011)
New Revision: 4279

Modified:
   SwiftApps/modFTdock/app/modftdock.sh
   SwiftApps/modFTdock/run.sh
   SwiftApps/modFTdock/sites-beagle.xml
   SwiftApps/modFTdock/tc
Log:
added a site file for small runs

Modified: SwiftApps/modFTdock/app/modftdock.sh
===================================================================
--- SwiftApps/modFTdock/app/modftdock.sh	2011-04-05 15:22:48 UTC (rev 4278)
+++ SwiftApps/modFTdock/app/modftdock.sh	2011-04-05 18:23:32 UTC (rev 4279)
@@ -3,8 +3,8 @@
 
 
 #commented the following for the time being
-#oomlog=/tmp/oom.log
-oomlog=/lustre/beagle/$USER/oom.log
+oomlog=/tmp/oom.log
+#oomlog=/lustre/beagle/$USER/oom.log
 host=$(hostname -s)
 date=$(date)
 
@@ -34,7 +34,7 @@
 done
 
 #/lustre/beagle/wilde/mp/mp01/app/modftdock${version} $* &
-/lustre/beagle/ketan/labs/modftdock/pbs.run/app/modftdock${version} $* &
+/home/ketan/SwiftApps/modFTdock/app/modftdock${version} $* &
 dockpid=$!
 
 # watch for mem dropping very low - kill dock process if below red mark

Modified: SwiftApps/modFTdock/run.sh
===================================================================
--- SwiftApps/modFTdock/run.sh	2011-04-05 15:22:48 UTC (rev 4278)
+++ SwiftApps/modFTdock/run.sh	2011-04-05 18:23:32 UTC (rev 4279)
@@ -4,7 +4,7 @@
 #SWIFT_HEAP_MAX=6000M swift -config cf -tc.file tc -sites.file beagle-sites.xml ftdock.swift -n=100 -list=pdb.list.100 -grid=0.5 >std.out 2>std.err < /dev/null &
 
 #short run for testing purpose
-swift -config cf -tc.file tc -sites.file sites-beagle.xml ftdock.swift -n=1 -list=pdb.list.1 -grid=10
+swift -config cf -tc.file tc -sites.file sites-beagle-small.xml ftdock.swift -n=1 -list=pdb.list.1 -grid=10
 
 #nohup execution for long runs
 #SWIFT_HEAP_MAX=6000M nohup swift -config cf -tc.file tc -sites.file sites-beagle.xml ftdock.swift -n=100 -list=pdb.list.100 -grid=0.5 >std.out 2>std.err < /dev/null &

Modified: SwiftApps/modFTdock/sites-beagle.xml
===================================================================
--- SwiftApps/modFTdock/sites-beagle.xml	2011-04-05 15:22:48 UTC (rev 4278)
+++ SwiftApps/modFTdock/sites-beagle.xml	2011-04-05 18:23:32 UTC (rev 4279)
@@ -3,6 +3,7 @@
   <pool handle="pbs">
   <!-- -->
     <execution provider="coaster" jobmanager="local:pbs"/>
+    
     <!-- <profile namespace="globus" key="queue">small</profile> -->
 
     <profile namespace="globus" key="project">CI-CCR000013</profile>
@@ -11,22 +12,22 @@
 
     <profile namespace="globus" key="workersPerNode">24</profile>
     
-    <profile namespace="globus" key="maxTime">30000</profile>
+    <profile namespace="globus" key="maxTime">100000</profile>
    
      <!--How many times larger than the job walltime should a block's walltime be if all jobs are 1s long -->
-    <profile namespace="globus" key="lowOverallocation">100</profile>
+   <profile namespace="globus" key="lowOverallocation">100</profile> 
 
      <!--How many times larger than the job walltime should a block's walltime be if all jobs are infinitely long -->
     <profile namespace="globus" key="highOverallocation">100</profile>
 
     <!-- pbs slot map from job requirement to pbs jobs which are called slots, upto this many pbs jobs-->
-    <profile namespace="globus" key="slots">10</profile>
+    <profile namespace="globus" key="slots">20</profile>
 
     <!-- smaller it is more likely it is fit into a slot  -->
     <profile namespace="globus" key="nodeGranularity">5</profile>
     
     <!-- maximum number of nodes per slot -->
-    <profile namespace="globus" key="maxNodes">10</profile>
+    <profile namespace="globus" key="maxNodes">5</profile>
 
     <!--(Throttle + .01)*100 => # of parallel jobs to run  -->
     <profile namespace="karajan" key="jobThrottle">20.00</profile>
@@ -35,6 +36,6 @@
 
     <filesystem provider="local"/>
      <!--IMP: Put a complete path of your choice for the workdir -->
-    <workdirectory >/tmp/swift.workdir</workdirectory>
+    <workdirectory >/home/ketan/SwiftApps/modFTdock/swift.workdir</workdirectory>
   </pool>
 </config>

Modified: SwiftApps/modFTdock/tc
===================================================================
--- SwiftApps/modFTdock/tc	2011-04-05 15:22:48 UTC (rev 4278)
+++ SwiftApps/modFTdock/tc	2011-04-05 18:23:32 UTC (rev 4279)
@@ -1,2 +1,3 @@
 #Put a *complete* path of modftdock.sh here
-pbs modftdock modFTdock/app/modftdock.sh null null GLOBUS::maxwalltime="01:00:00"
+pbs modftdock /home/ketan/SwiftApps/modFTdock/app/modftdock.sh null null GLOBUS::maxwalltime="00:10:00"
+#localhost modftdock /home/ketan/SwiftApps/modFTdock/app/modftdock.sh null null GLOBUS::maxwalltime="00:10:00"