[Swift-commit] r3154 - SwiftApps/SIDGrid/swift/projects/andric/peakfit_pilots/PK2/turnpointAnalysis/chisqperm

[noreply at svn.ci.uchicago.edu]

Author: andric
Date: 2009-10-13 12:18:09 -0500 (Tue, 13 Oct 2009)
New Revision: 3154

Added:
   SwiftApps/SIDGrid/swift/projects/andric/peakfit_pilots/PK2/turnpointAnalysis/chisqperm/ClstrMasstr.py
Log:
prototype script for clustering and extracting info from permutations

Added: SwiftApps/SIDGrid/swift/projects/andric/peakfit_pilots/PK2/turnpointAnalysis/chisqperm/ClstrMasstr.py
===================================================================
--- SwiftApps/SIDGrid/swift/projects/andric/peakfit_pilots/PK2/turnpointAnalysis/chisqperm/ClstrMasstr.py	                        (rev 0)
+++ SwiftApps/SIDGrid/swift/projects/andric/peakfit_pilots/PK2/turnpointAnalysis/chisqperm/ClstrMasstr.py	2009-10-13 17:18:09 UTC (rev 3154)
@@ -0,0 +1,101 @@
+#!/usr/bin/python
+
+## Sept.2009: This is for grabbing the cluster information (after running SurfClust).
+## Can run 4 types of procedures. Specify after "--procedure" flag: 
+## 1) "NumberNodes" >>> Writing out the cluster size via number of nodes after SurfClust on a single input.
+## 2) "PermNumberNodes" >>> Writing out the largest cluster's number of nodes on clustered permutation output
+## 3) "ClusterMass" >>> calculating the cluster mass: the number of nodes times the statistic value on a single clustered input.
+## 4) "PermClusterMass" >>> calculating the cluster mass on clustered permutation output, writing out the largest clustermass
+
+import sys
+
+class ClstrMasstr:
+
+    def __init__(self):
+        self.input = ""
+        self.outname = ""
+        self.proc_type = ""
+
+    def get_opts (self,allargstr):
+        print "length of argstr "+str(len(allargstr))
+        i = 0
+        for o in allargstr:
+            print "arg is "+o
+            if o == "--input":
+                self.input = allargstr[i+1]
+            elif o == "--outputname":
+                self.outname = allargstr[i+1]
+            elif o == "--procedure":
+                self.proc_type = allargstr[i+1]
+            print "input: "+self.input
+            print "outname: "+self.outname
+            print "procedure: "+self.proc_type
+            i = i+1
+
+    def get_clstr(self):
+        cluster_file = open(self.input,"r").read().split("\n")
+        cluster_file_length = len(cluster_file)-1
+        clstrlist = ""
+        for i in range(16,cluster_file_length):
+            numNd = int(cluster_file[i].split()[1])
+            clstrlist += ""+cluster_file[i].split()[0]+" "+`numNd`+"\n"
+
+        outfile = open(self.outname,"w")
+        outfile.write(clstrlist)
+        outfile.close()
+
+    def get_Perm_clstr(self):
+        cluster_file = open(self.input,"r").read().split("\n")
+        cluster_file_length = len(cluster_file)-1
+        if len(cluster_file)-1 == 1:
+            clusterSize = cluster_file[0]+" \n"
+        else:
+            numNd = int(cluster_file[16].split()[1])
+            clusterSize = `numNd`+" \n"
+        
+        outfile = open(self.outname,"w")
+        outfile.write(clusterSize)
+        outfile.close()
+
+    def get_clstrmass(self):
+        cluster_file = open(self.input,"r").read().split("\n")
+        cluster_file_length = len(cluster_file)-1
+        clstrmasslist = ""
+        for i in range(16,cluster_file_length):
+            numNd = int(cluster_file[i].split()[1])
+            Mean = float(cluster_file[i].split()[3])
+            mass = numNd*Mean
+            massval = "%.3f" % mass
+            clstrmasslist += ""+cluster_file[i].split()[0]+" "+massval+"\n"
+
+        outfile = open(self.outname,"w")
+        outfile.write(clstrmasslist)
+        outfile.close()
+
+    def get_Perm_clstrmass(self):
+        cluster_file = open(self.input,"r").read().split("\n")
+        if len(cluster_file)-1 == 1:
+            clstrmassval = cluster_file[0]+" \n"
+        else:
+            numNd = int(cluster_file[16].split()[1])
+            Mean = float(cluster_file[16].split()[3])
+            mass = numNd*Mean
+            massval = "%.3f" % mass
+            clstrmassval = massval+" \n"
+        
+        outfile = open(self.outname,"w")
+        outfile.write(clstrmassval)
+        outfile.close()
+
+
+
+clstr = ClstrMasstr()
+clstr.get_opts(sys.argv)
+if clstr.proc_type == "NumberNodes":
+    clstr.get_clstr()
+elif clstr.proc_type == "PermNumberNodes":
+    clstr.get_Perm_clstr()
+elif clstr.proc_type == "ClusterMass":
+    clstr.get_clstrmass()
+elif clstr.proc_type == "PermClusterMass":
+    clstr.get_Perm_clstrmass()


Property changes on: SwiftApps/SIDGrid/swift/projects/andric/peakfit_pilots/PK2/turnpointAnalysis/chisqperm/ClstrMasstr.py
___________________________________________________________________
Name: svn:executable
   + *