[Swift-commit] r2951 - SwiftApps/SIDGrid/config

[noreply at svn.ci.uchicago.edu]

Author: skenny
Date: 2009-06-01 13:49:37 -0500 (Mon, 01 Jun 2009)
New Revision: 2951

Modified:
   SwiftApps/SIDGrid/config/tc.data
Log:
new path for R install on BSD cluster

Modified: SwiftApps/SIDGrid/config/tc.data
===================================================================
--- SwiftApps/SIDGrid/config/tc.data	2009-05-28 20:25:56 UTC (rev 2950)
+++ SwiftApps/SIDGrid/config/tc.data	2009-06-01 18:49:37 UTC (rev 2951)
@@ -723,7 +723,7 @@
 BSD   touch /bin/touch  INSTALLED INTEL32::LINUX  null
 BSD   globus-url-copy /soft/globus-4.0.3-r1/bin/globus-url-copy  INSTALLED INTEL64::LINUX  env::LD_LIBRARY_PATH=/soft/globus-4.0.3-r1/lib
 BSD   R /usr/bin/R  INSTALLED INTEL32::LINUX  env::R_LIBS=/disks/ci-gpfs/fmri/cnari/apps/R_library
-BSD   RInvoke /disks/ci-gpfs/fmri/cnari/scripts/RInvoke.sh  INSTALLED INTEL32::LINUX env::R_LIBS=/disks/ci-gpfs/fmri/cnari/apps/R_library
+BSD   RInvoke /disks/ci-gpfs/fmri/cnari/scripts/RInvoke.sh  INSTALLED INTEL32::LINUX env::PATHPREFIX=/disks/ci-gpfs/fmri/SIDGrid/usr32/bin
 BSD   Rcmd /disks/ci-gpfs/fmri/cnari/scripts/Rcmd.sh  INSTALLED INTEL32::LINUX env::R_LIBS=/disks/ci-gpfs/fmri/cnari/apps/R_library
 BSD   Mediator /disks/ci-gpfs/fmri/cnari/scripts/Mediator.py INSTALLED INTEL32::LINUX null
 BSD   env /usr/env INSTALLED INTEL32::LINUX null
@@ -2155,6 +2155,14 @@
 RANGER env /usr/bin/env  INSTALLED INTEL64::LINUX   GLOBUS::maxwalltime=10,queue=normal
 RANGER Mediator /scratch/projects/tg/SIDGrid/scripts/Mediator.py  INSTALLED INTEL64::LINUX   env::PATHPREFIX=/scratch/projects/tg/SIDGrid/usr/bin,LD_LIBRARY_PATH=/scratch/projects/tg/SIDGrid/usr/lib/mysql
 
+#----freesurfer
+
+RANGER      recon1   /scratch/projects/tg/SIDGrid/freesurfer/bin/recon1.sh  INSTALLED INTEL32::LINUX  env::FREESURFER_HOME=/scratch/projects/tg/SIDGrid/freesurfer
+RANGER      recon2L   /scratch/projects/tg/SIDGrid/freesurfer/bin/recon2L.sh  INSTALLED INTEL32::LINUX  env::FREESURFER_HOME=/scratch/projects/tg/SIDGrid/freesurfer
+RANGER      recon2R   /scratch/projects/tg/SIDGrid/freesurfer/bin/recon2R.sh  INSTALLED INTEL32::LINUX  env::FREESURFER_HOME=/scratch/projects/tg/SIDGrid/freesurfer
+RANGER      autorecon2_BOTH   /scratch/projects/tg/SIDGrid/freesurfer/bin/autorecon2_BOTH.sh  INSTALLED INTEL32::LINUX  env::FREESURFER_HOME=/scratch/projects/tg/SIDGrid/freesurfer
+RANGER      reconFINAL   /scratch/projects/tg/SIDGrid/freesurfer/bin/reconFINAL.sh  INSTALLED INTEL32::LINUX  env::FREESURFER_HOME=/scratch/projects/tg/SIDGrid/freesurfer,PATHPREFIX=/scratch/projects/tg/SIDGrid/usr/bin
+
 ####-----------------BIGRED-----------------------------
 #------AFNI
 BIGRED   AFNI_1dcat   /N/u/tg-scommun/BigRed/sidgrid/usr/bin/1dcat   INSTALLED INTEL64::LINUX GLOBUS::maxwalltime=100;env::PATHPREFIX=/N/u/tg-scommun/BigRed/sidgrid/usr/bin,LD_LIBRARY_PATH=/N/u/tg-scommun/BigRed/sidgrid/usr/bin
@@ -2440,3 +2448,4 @@
 
 localhost   RInvoke   /disks/ci-gpfs/fmri/cnari/scripts/RInvoke.sh INSTALLED INTEL64::LINUX null
 localhost   echo   /bin/echo INSTALLED INTEL64::LINUX null
+localhost   AFNI_3dDeconvolve   /disks/ci-gpfs/fmri/tools/AFNI/linux_gcc32/3dDeconvolve   INSTALLED INTEL32::LINUX null