[Swift-commit] r2801 - usertools/cio/science/blast

[noreply at svn.ci.uchicago.edu]

Author: aespinosa
Date: 2009-04-01 16:29:16 -0500 (Wed, 01 Apr 2009)
New Revision: 2801

Modified:
   usertools/cio/science/blast/blast.swift
Log:
BLAST workflow now working with mockblast too

Modified: usertools/cio/science/blast/blast.swift
===================================================================
--- usertools/cio/science/blast/blast.swift	2009-04-01 21:27:35 UTC (rev 2800)
+++ usertools/cio/science/blast/blast.swift	2009-04-01 21:29:16 UTC (rev 2801)
@@ -27,8 +27,10 @@
 BlastQuery input[] <ext;exec="mapper-in.sh", a="10", b="20", d="0497">;
 
 BlastQuery in_test <"test.in">;
+BlastResult out_test <simple_mapper;prefix="test">;
 
-out[0] = blastall(in_test, pir);
+
+out_test = blastall(in_test, pir);
 /*
 foreach data ,i in input {
   (out[i],err[i]) = blastall(data, pir);