[Swift-commit] r2133 - SwiftApps/SIDGrid/swift/projects/andric/ccf_emblem/NonParametric_lag_analy

[noreply at svn.ci.uchicago.edu]

Author: skenny
Date: 2008-07-18 13:02:42 -0500 (Fri, 18 Jul 2008)
New Revision: 2133

Added:
   SwiftApps/SIDGrid/swift/projects/andric/ccf_emblem/NonParametric_lag_analy/permclust.swift
Log:
param stuff

Added: SwiftApps/SIDGrid/swift/projects/andric/ccf_emblem/NonParametric_lag_analy/permclust.swift
===================================================================
--- SwiftApps/SIDGrid/swift/projects/andric/ccf_emblem/NonParametric_lag_analy/permclust.swift	                        (rev 0)
+++ SwiftApps/SIDGrid/swift/projects/andric/ccf_emblem/NonParametric_lag_analy/permclust.swift	2008-07-18 18:02:42 UTC (rev 2133)
@@ -0,0 +1,29 @@
+type file{}
+
+type surfclust_table{}
+
+
+(surfclust_table surfclustOutput) SurfClust (file specFile, file surfFile, file input, float threshVal, string prefix){
+    app {
+        SurfClust "-spec" @filename(specFile) "-surf_A" @filename(surfFile) "-input" @filename(input) "1 -rmm 2.8 -thresh_col 1 -thresh" threshVal "-amm2 2 -sort_n_nodes -prepend_node_index -prefix" prefix;
+    }
+}
+
+
+string SeedRegions = ["IDEAL"];
+string hemis = ["lh","rh"];
+float vertexThresh[] = [6.0];
+
+foreach seed in SeedRegions{
+    foreach h in hemis{
+        foreach thresh in vertexThresh{
+            file HORRYspec <single_file_mapper;file=@strcat("HORRY.",h,".mesh140_std.spec")>;
+            file HORRYsurf <single_file_mapper;file=@strcat("HORRY.",h,".mesh140_std.pial.asc")>;
+            string inputName=@strcat("results/",h,"_",seed,"_new_sorted.txt");
+            file inputFile <single_file_mapper;file=inputName>;
+            string outPrefix=@strcat(h,"_",seed,"_PERMTEST",thresh);
+            surfclust_table surfclustOutput <single_file_mapper; file=@strcat(h,"_",seed,"_PERMTEST6_ClstTable_r2.8_a2.0.1D")>;
+            (surfclustOutput) = SurfClust(HORRYspec,HORRYsurf,inputFile,thresh,outPrefix);
+        }
+    }
+}