[petsc-users] Problem running geoclaw example with petsc 3.22
Praveen C
cpraveen at gmail.com
Thu Oct 24 11:17:31 CDT 2024
Hello Barry
I use this script to install clawpack and required dependencies
https://urldefense.us/v3/__https://github.com/cpraveen/cfdlab/blob/master/bin/clawpack.sh__;!!G_uCfscf7eWS!fvuzf9vr_6FD4jbeIajCoXJnAXTzstvxWHD2FAL9lFHroogk1p_mvSk5I20ogPCA3z3OI8jNMbzr3OApoFWW8w$
See lines 125-132
You can use it like this
export CLAW=/path/to/where/you/want/clawpack
bash clawpack.sh v5.11.0
This will git pull clawpack and creates a conda env called “claw” and installs inside that.
I have not specified petsc version in this script, but latest miniforge should install petsc at 3.22
Thank you
praveen
> On 24 Oct 2024, at 9:37 PM, Barry Smith <bsmith at petsc.dev> wrote:
>
>
> Good, some helpful information with the runs you made.
>
> In the crash below it made more progress it was able to allocate multiple regions of shared memory and access them. I don't know why it would crash later.
>
> Can you tell me all the steps with miniforge (which seems to be related to the failure) you use? I've never used miniforge.
>
> If I can get to an environment that reproduces the problem I can debug it and fix it.
>
> Barry
>
>
>> On Oct 24, 2024, at 11:49 AM, Praveen C <cpraveen at gmail.com> wrote:
>>
>> I get this
>>
>> $ mpiexec -n 3 ./ex89f -n 20 -mpi_linear_solver_server -mpi_linear_solver_server -mpi_linear_solver_server_ksp_view -ksp_monitor -ksp_converged_reason -ksp_view -mpi_linear_solver_server_minimum_count_per_rank 5
>> [0]PETSC ERROR: ------------------------------------------------------------------------
>> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range
>> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
>> [0]PETSC ERROR: or see https://urldefense.us/v3/__https://petsc.org/release/faq/*valgrind__;Iw!!G_uCfscf7eWS!fvuzf9vr_6FD4jbeIajCoXJnAXTzstvxWHD2FAL9lFHroogk1p_mvSk5I20ogPCA3z3OI8jNMbzr3OAkxkT2HQ$ and https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!fvuzf9vr_6FD4jbeIajCoXJnAXTzstvxWHD2FAL9lFHroogk1p_mvSk5I20ogPCA3z3OI8jNMbzr3ODvXnLz2A$
>> [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run
>> [0]PETSC ERROR: to get more information on the crash.
>> [0]PETSC ERROR: Run with -malloc_debug to check if memory corruption is causing the crash.
>> --------------------------------------------------------------------------
>> MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_SELF
>> Proc: [[47380,1],0]
>> Errorcode: 59
>>
>> NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
>> You may or may not see output from other processes, depending on
>> exactly when Open MPI kills them.
>> --------------------------------------------------------------------------
>> --------------------------------------------------------------------------
>> prterun has exited due to process rank 0 with PID 0 on node MacMiniHome calling
>> "abort". This may have caused other processes in the application to be
>> terminated by signals sent by prterun (as reported here).
>> —————————————————————————————————————
>>
>> and I have this after the code exits
>>
>> $ ipcs -m
>> IPC status from <running system> as of Thu Oct 24 21:17:39 IST 2024
>> T ID KEY MODE OWNER GROUP
>> Shared Memory:
>> m 1572864 0x0000000b --rw-rw-rw- praveen staff
>> m 524289 0x0000000c --rw-rw-rw- praveen staff
>> m 655362 0x0000000d --rw-rw-rw- praveen staff
>> m 262147 0x0000000e --rw-rw-rw- praveen staff
>> m 262148 0x0000000f --rw-rw-rw- praveen staff
>> m 393221 0x0000000a --rw-rw-rw- praveen staff
>>
>> This is with petsc installed with miniforge, which I also use with clawpack. With spack installed petsc, I can run the ex89f example.
>>
>> Thanks
>> praveen
>>
>>> On 24 Oct 2024, at 7:55 PM, Barry Smith <bsmith at petsc.dev> wrote:
>>>
>>>
>>> Ok, super strange, I've run many times on my Mac
>>>
>>> Can you please try to remove that allocated memory with ipcrm and then
>>>
>>> cd $PETSC_DIR/src/ksp/ksp/tutorials
>>> make ex89f
>>> mpiexec -n 3 ./ex89f -n 20 -mpi_linear_solver_server -mpi_linear_solver_server -mpi_linear_solver_server_ksp_view -ksp_monitor -ksp_converged_reason -ksp_view -mpi_linear_solver_server_minimum_count_per_rank 5
>>>
>>> This does the same thing as the GeoClaw code but is much simpler.
>>>
>>> Barry
>>>
>>>
>>>
>>>
>>>> On Oct 23, 2024, at 10:55 PM, Praveen C <cpraveen at gmail.com> wrote:
>>>>
>>>> I get very similar error on my mac with
>>>>
>>>> $ gfortran -v
>>>> Using built-in specs.
>>>> COLLECT_GCC=gfortran
>>>> COLLECT_LTO_WRAPPER=/opt/homebrew/Caskroom/miniforge/base/envs/claw/libexec/gcc/arm64-apple-darwin20.0.0/13.2.0/lto-wrapper
>>>> Target: arm64-apple-darwin20.0.0
>>>> Configured with: ../configure --prefix=/opt/homebrew/Caskroom/miniforge/base/envs/claw --build=x86_64-apple-darwin13.4.0 --host=arm64-apple-darwin20.0.0 --target=arm64-apple-darwin20.0.0 --with-libiconv-prefix=/opt/homebrew/Caskroom/miniforge/base/envs/claw --enable-languages=fortran --disable-multilib --enable-checking=release --disable-bootstrap --disable-libssp --with-gmp=/opt/homebrew/Caskroom/miniforge/base/envs/claw --with-mpfr=/opt/homebrew/Caskroom/miniforge/base/envs/claw --with-mpc=/opt/homebrew/Caskroom/miniforge/base/envs/claw --with-isl=/opt/homebrew/Caskroom/miniforge/base/envs/claw --enable-darwin-at-rpath
>>>> Thread model: posix
>>>> Supported LTO compression algorithms: zlib
>>>> gcc version 13.2.0 (GCC)
>>>>
>>>> Before starting
>>>>
>>>> $ ipcs -m
>>>> IPC status from <running system> as of Thu Oct 24 08:02:11 IST 2024
>>>> T ID KEY MODE OWNER GROUP
>>>> Shared Memory:
>>>>
>>>> and when I run the code
>>>>
>>>> Using a PETSc solver
>>>> Using Bouss equations from the start
>>>> rnode allocated...
>>>> node allocated...
>>>> listOfGrids allocated...
>>>> Storage allocated...
>>>> bndList allocated...
>>>> Gridding level 1 at t = 0.000000E+00: 4 grids with 10000 cells
>>>> Setting initial dt to 2.9999999999999999E-002
>>>> max threads set to 1
>>>>
>>>> Done reading data, starting computation ...
>>>>
>>>> Total zeta at initial time: 39269.907650665169
>>>> GEOCLAW: Frame 0 output files done at time t = 0.000000D+00
>>>>
>>>> [0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
>>>> [0]PETSC ERROR: Petsc has generated inconsistent data
>>>> [0]PETSC ERROR: Unable to locate PCMPI allocated shared address 0x130698000
>>>> [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc!
>>>> [0]PETSC ERROR: Option left: name:-ksp_type value: preonly source: file
>>>> [0]PETSC ERROR: Option left: name:-mpi_ksp_max_it value: 200 source: file
>>>> [0]PETSC ERROR: Option left: name:-mpi_ksp_reuse_preconditioner (no value) source: file
>>>> [0]PETSC ERROR: Option left: name:-mpi_ksp_rtol value: 1.e-9 source: file
>>>> [0]PETSC ERROR: Option left: name:-mpi_ksp_type value: gmres source: file
>>>> [0]PETSC ERROR: Option left: name:-mpi_linear_solver_server_view (no value) source: file
>>>> [0]PETSC ERROR: Option left: name:-mpi_pc_gamg_sym_graph value: true source: file
>>>> [0]PETSC ERROR: Option left: name:-mpi_pc_gamg_symmetrize_graph value: true source: file
>>>> [0]PETSC ERROR: Option left: name:-mpi_pc_type value: gamg source: file
>>>> [0]PETSC ERROR: Option left: name:-pc_mpi_minimum_count_per_rank value: 5000 source: file
>>>> [0]PETSC ERROR: Option left: name:-pc_type value: mpi source: file
>>>> [0]PETSC ERROR: See https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!fvuzf9vr_6FD4jbeIajCoXJnAXTzstvxWHD2FAL9lFHroogk1p_mvSk5I20ogPCA3z3OI8jNMbzr3ODvXnLz2A$ for trouble shooting.
>>>> [0]PETSC ERROR: Petsc Release Version 3.22.0, Sep 28, 2024
>>>> [0]PETSC ERROR: /Users/praveen/work/bouss/radial_flat/xgeoclaw with 6 MPI process(es) and PETSC_ARCH on MacMiniHome.local by praveen Thu Oct 24 08:04:27 2024
>>>> [0]PETSC ERROR: Configure options: AR=arm64-apple-darwin20.0.0-ar CC=mpicc CXX=mpicxx FC=mpifort CFLAGS="-ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem /opt/homebrew/Caskroom/miniforge/base/envs/claw/include " CPPFLAGS="-D_FORTIFY_SOURCE=2 -isystem /opt/homebrew/Caskroom/miniforge/base/envs/claw/include -mmacosx-version-min=11.0 -mmacosx-version-min=11.0" CXXFLAGS="-ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /opt/homebrew/Caskroom/miniforge/base/envs/claw/include " FFLAGS="-march=armv8.3-a -ftree-vectorize -fPIC -fno-stack-protector -O2 -pipe -isystem /opt/homebrew/Caskroom/miniforge/base/envs/claw/include " LDFLAGS="-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib -L/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib" LIBS="-Wl,-rpath,/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib -lmpi_mpifh -lgfortran" --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 --FOPTFLAGS=-O3 --with-clib-autodetect=0 --with-cxxlib-autodetect=0 --with-fortranlib-autodetect=0 --with-debugging=0 --with-blas-lib=libblas.dylib --with-lapack-lib=liblapack.dylib --with-yaml=1 --with-hdf5=1 --with-fftw=1 --with-hwloc=0 --with-hypre=1 --with-metis=1 --with-mpi=1 --with-mumps=1 --with-parmetis=1 --with-pthread=1 --with-ptscotch=1 --with-shared-libraries --with-ssl=0 --with-scalapack=1 --with-superlu=1 --with-superlu_dist=1 --with-superlu_dist-include=/opt/homebrew/Caskroom/miniforge/base/envs/claw/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-suitesparse=1 --with-suitesparse-dir=/opt/homebrew/Caskroom/miniforge/base/envs/claw --with-x=0 --with-scalar-type=real --with-cuda=0 --with-batch --prefix=/opt/homebrew/Caskroom/miniforge/base/envs/claw
>>>> [0]PETSC ERROR: #1 PetscShmgetMapAddresses() at /Users/runner/miniforge3/conda-bld/petsc_1728030427805/work/src/sys/utils/server.c:114
>>>> [0]PETSC ERROR: #2 PCMPISetMat() at /Users/runner/miniforge3/conda-bld/petsc_1728030427805/work/src/ksp/pc/impls/mpi/pcmpi.c:269
>>>> [0]PETSC ERROR: #3 PCSetUp_MPI() at /Users/runner/miniforge3/conda-bld/petsc_1728030427805/work/src/ksp/pc/impls/mpi/pcmpi.c:853
>>>> [0]PETSC ERROR: #4 PCSetUp() at /Users/runner/miniforge3/conda-bld/petsc_1728030427805/work/src/ksp/pc/interface/precon.c:1071
>>>> [0]PETSC ERROR: #5 KSPSetUp() at /Users/runner/miniforge3/conda-bld/petsc_1728030427805/work/src/ksp/ksp/interface/itfunc.c:415
>>>> [0]PETSC ERROR: #6 KSPSolve_Private() at /Users/runner/miniforge3/conda-bld/petsc_1728030427805/work/src/ksp/ksp/interface/itfunc.c:826
>>>> [0]PETSC ERROR: #7 KSPSolve() at /Users/runner/miniforge3/conda-bld/petsc_1728030427805/work/src/ksp/ksp/interface/itfunc.c:1075
>>>>
>>>> Code does not progress and I kill it
>>>>
>>>> ^CTraceback (most recent call last):
>>>> File "/Users/praveen/Applications/clawpack/clawutil/src/python/clawutil/runclaw.py", line 341, in <module>
>>>> runclaw(*args)
>>>> File "/Users/praveen/Applications/clawpack/clawutil/src/python/clawutil/runclaw.py", line 242, in runclaw
>>>> proc = subprocess.check_call(cmd_split,
>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> File "/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib/python3.12/subprocess.py", line 408, in check_call
>>>> retcode = call(*popenargs, **kwargs)
>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> File "/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib/python3.12/subprocess.py", line 391, in call
>>>> return p.wait(timeout=timeout)
>>>> ^^^^^^^^^^^^^^^^^^^^^^^
>>>> File "/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib/python3.12/subprocess.py", line 1264, in wait
>>>> return self._wait(timeout=timeout)
>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> File "/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib/python3.12/subprocess.py", line 2053, in _wait
>>>> (pid, sts) = self._try_wait(0)
>>>> ^^^^^^^^^^^^^^^^^
>>>> File "/opt/homebrew/Caskroom/miniforge/base/envs/claw/lib/python3.12/subprocess.py", line 2011, in _try_wait
>>>> (pid, sts) = os.waitpid(self.pid, wait_flags)
>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>> KeyboardInterrupt
>>>> make[1]: *** [output] Interrupt: 2
>>>> make: *** [.output] Interrupt: 2
>>>>
>>>> Now it says
>>>>
>>>> $ ipcs -m
>>>> IPC status from <running system> as of Thu Oct 24 08:05:06 IST 2024
>>>> T ID KEY MODE OWNER GROUP
>>>> Shared Memory:
>>>> m 720896 0x0000000a --rw-rw-rw- praveen staff
>>>>
>>>> Thanks
>>>> praveen
>>>>
>>>>> On 23 Oct 2024, at 8:26 PM, Barry Smith <bsmith at petsc.dev> wrote:
>>>>>
>>>>>
>>>>> Hmm, so it is creating the first shared memory region with ID of 10 (A in hex) puts it in a linked list in PETSc but then when it tries to find it in the linked list it cannot find it.
>>>>>
>>>>> I don't know how to reproduce this or debug it remotely.
>>>>>
>>>>> Can you build on a completely different machine or with completely different compilers?
>>>>>
>>>>> Barry
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>> On Oct 23, 2024, at 10:31 AM, Praveen C <cpraveen at gmail.com> wrote:
>>>>>>
>>>>>> I get same error and now it shows
>>>>>>
>>>>>> $ ipcs -m
>>>>>>
>>>>>> ------ Shared Memory Segments --------
>>>>>> key shmid owner perms bytes nattch status
>>>>>> 0x0000000a 32788 praveen 666 240 6
>>>>>>
>>>>>> Note that the code seems to be still running after printing those error message, but it is not printing any progress which it should do.
>>>>>>
>>>>>> Thanks
>>>>>> praveen
>>>>>>
>>>>>>> On 23 Oct 2024, at 7:56 PM, Barry Smith <bsmith at petsc.dev> wrote:
>>>>>>>
>>>>>>>
>>>>>>> Try
>>>>>>>
>>>>>>> ipcrm -m 11
>>>>>>>
>>>>>>> ipcs -m
>>>>>>>
>>>>>>> Try running the program again
>>>>>>>
>>>>>>> If failed check
>>>>>>>
>>>>>>> ipcs -m
>>>>>>>
>>>>>>> again
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>> On Oct 23, 2024, at 10:20 AM, Praveen C <cpraveen at gmail.com> wrote:
>>>>>>>>
>>>>>>>> Hello Barry
>>>>>>>>
>>>>>>>> I see this
>>>>>>>>
>>>>>>>> $ ipcs -m
>>>>>>>>
>>>>>>>> ------ Shared Memory Segments --------
>>>>>>>> key shmid owner perms bytes nattch status
>>>>>>>> 0x0000000a 11 praveen 666 240 6
>>>>>>>>
>>>>>>>> and I am observing same error as below.
>>>>>>>>
>>>>>>>> Thanks
>>>>>>>> praveen
>>>>>>>>
>>>>>>>>> On 23 Oct 2024, at 7:08 PM, Barry Smith <bsmith at petsc.dev> wrote:
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Please take a look at the notes in https://urldefense.us/v3/__https://petsc.org/release/manualpages/Sys/PetscShmgetAllocateArray/__;!!G_uCfscf7eWS!fvuzf9vr_6FD4jbeIajCoXJnAXTzstvxWHD2FAL9lFHroogk1p_mvSk5I20ogPCA3z3OI8jNMbzr3OD4MyLSQw$ For some reason your program is not able to access/use the Unix shared memory; check if you are already using the shared memory (so it is not available for a new run) or the limits are too low to access enough memory.
>>>>>>>>>
>>>>>>>>> Barry
>>>>>>>>>
>>>>>>>>>> On Oct 23, 2024, at 8:23 AM, Praveen C <cpraveen at gmail.com> wrote:
>>>>>>>>>>
>>>>>>>>>> Dear all
>>>>>>>>>>
>>>>>>>>>> I am not able to run the boussinesq example from geoclaw using petsc at 3.22.0
>>>>>>>>>>
>>>>>>>>>> https://urldefense.us/v3/__https://github.com/clawpack/geoclaw/tree/3303883f46572c58130d161986b8a87a57ca7816/examples/bouss__;!!G_uCfscf7eWS!e3VQ4NHKmXGstRsQW5vtI7fmKfUT9zmJkMJcPbcvPyIjicyfJpNoMgx3wZ-qyGcKNSjIkNZkzilec8MnHN6PMw$
>>>>>>>>>>
>>>>>>>>>> It runs with petsc at 3.21.6
>>>>>>>>>>
>>>>>>>>>> The error I get is given below. After printing this, the code does not progress.
>>>>>>>>>>
>>>>>>>>>> I use the following petsc options
>>>>>>>>>>
>>>>>>>>>> # set min numbers of matrix rows per MPI rank (default is 10000)
>>>>>>>>>> -mpi_linear_solve_minimum_count_per_rank 5000
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> # Krylov linear solver:
>>>>>>>>>> -mpi_linear_solver_server
>>>>>>>>>> -mpi_linear_solver_server_view
>>>>>>>>>> -ksp_type gmres
>>>>>>>>>> -ksp_max_it 200
>>>>>>>>>> -ksp_reuse_preconditioner
>>>>>>>>>> -ksp_rtol 1.e-9
>>>>>>>>>>
>>>>>>>>>> # preconditioner:
>>>>>>>>>> -pc_type gamg
>>>>>>>>>>
>>>>>>>>>> I installed petsc and other dependencies for clawpack using miniforge.
>>>>>>>>>>
>>>>>>>>>> Thanks
>>>>>>>>>> pc
>>>>>>>>>>
>>>>>>>>>> ==> Use Bouss. in water deeper than 1.0000000000000000 Using a PETSc solver
>>>>>>>>>> Using Bouss equations from the start
>>>>>>>>>> rnode allocated...
>>>>>>>>>> node allocated...
>>>>>>>>>> listOfGrids allocated...
>>>>>>>>>> Storage allocated...
>>>>>>>>>> bndList allocated...
>>>>>>>>>> Gridding level 1 at t = 0.000000E+00: 4 grids with 10000 cells
>>>>>>>>>> Setting initial dt to 2.9999999999999999E-002
>>>>>>>>>> max threads set to 6
>>>>>>>>>> Done reading data, starting computation ... Total zeta at initial time: 39269.907650665169 GEOCLAW: Frame 0 output files done at time t = 0.000000D+00
>>>>>>>>>>
>>>>>>>>>> [0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
>>>>>>>>>> [0]PETSC ERROR: Petsc has generated inconsistent data
>>>>>>>>>> [0]PETSC ERROR: Unable to locate PCMPI allocated shared address 0x55e6d750ae20
>>>>>>>>>> [0]PETSC ERROR: WARNING! There are unused option(s) set! Could be the program crashed before usage or a spelling mistake, etc!
>>>>>>>>>> [0]PETSC ERROR: Option left: name:-ksp_max_it value: 200 source: file
>>>>>>>>>> [0]PETSC ERROR: Option left: name:-ksp_reuse_preconditioner (no value) source: file
>>>>>>>>>> [0]PETSC ERROR: Option left: name:-ksp_rtol value: 1.e-9 source: file
>>>>>>>>>> [0]PETSC ERROR: Option left: name:-ksp_type value: gmres source: file
>>>>>>>>>> [0]PETSC ERROR: Option left: name:-mpi_linear_solve_minimum_count_per_rank value: 5000 source: file
>>>>>>>>>> [0]PETSC ERROR: Option left: name:-mpi_linear_solver_server_view (no value) source: file
>>>>>>>>>> [0]PETSC ERROR: Option left: name:-pc_type value: gamg source: file
>>>>>>>>>> [0]PETSC ERROR: See https://urldefense.us/v3/__https://petsc.org/release/faq/__;!!G_uCfscf7eWS!e3VQ4NHKmXGstRsQW5vtI7fmKfUT9zmJkMJcPbcvPyIjicyfJpNoMgx3wZ-qyGcKNSjIkNZkzilec8MvNjNo7A$ for trouble shooting.
>>>>>>>>>> [0]PETSC ERROR: Petsc Release Version 3.22.0, Sep 28, 2024 [0]PETSC ERROR: /home/praveen/bouss/radial_flat/xgeoclaw with 6 MPI process(es) and PETSC_ARCH on euler by praveen Thu Oct 17 21:49:54 2024
>>>>>>>>>> [0]PETSC ERROR: Configure options: AR=${PREFIX}/bin/x86_64-conda-linux-gnu-ar CC=mpicc CXX=mpicxx FC=mpifort CFLAGS="-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /opt/miniforge/envs/claw/include " CPPFLAGS="-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /opt/miniforge/envs/claw/include" CXXFLAGS="-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /opt/miniforge/envs/claw/include " FFLAGS="-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /opt/miniforge/envs/claw/include -Wl,--no-as-needed" LDFLAGS="-pthread -fopenmp -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/opt/miniforge/envs/claw/lib -Wl,-rpath-link,/opt/miniforge/envs/claw/lib -L/opt/miniforge/envs/claw/lib -Wl,-rpath-link,/opt/miniforge/envs/claw/lib" LIBS="-Wl,-rpath,/opt/miniforge/envs/claw/lib -lmpi_mpifh -lgfortran" --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 --FOPTFLAGS=-O3 --with-clib-autodetect=0 --with-cxxlib-autodetect=0 --with-fortranlib-autodetect=0 --with-debugging=0 --with-blas-lib=libblas.so --with-lapack-lib=liblapack.so --with-yaml=1 --with-hdf5=1 --with-fftw=1 --with-hwloc=0 --with-hypre=1 --with-metis=1 --with-mpi=1 --with-mumps=1 --with-parmetis=1 --with-pthread=1 --with-ptscotch=1 --with-shared-libraries --with-ssl=0 --with-scalapack=1 --with-superlu=1 --with-superlu_dist=1 --with-superlu_dist-include=/opt/miniforge/envs/claw/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-suitesparse=1 --with-suitesparse-dir=/opt/miniforge/envs/claw --with-x=0 --with-scalar-type=real --with-cuda=0 --prefix=/opt/miniforge/envs/claw
>>>>>>>>>> [0]PETSC ERROR: #1 PetscShmgetMapAddresses() at /home/conda/feedstock_root/build_artifacts/petsc_1728030599661/work/src/sys/utils/server.c:114
>>>>>>>>>> [0]PETSC ERROR: #2 PCMPISetMat() at /home/conda/feedstock_root/build_artifacts/petsc_1728030599661/work/src/ksp/pc/impls/mpi/pcmpi.c:269
>>>>>>>>>> [0]PETSC ERROR: #3 PCSetUp_MPI() at /home/conda/feedstock_root/build_artifacts/petsc_1728030599661/work/src/ksp/pc/impls/mpi/pcmpi.c:853
>>>>>>>>>> [0]PETSC ERROR: #4 PCSetUp() at /home/conda/feedstock_root/build_artifacts/petsc_1728030599661/work/src/ksp/pc/interface/precon.c:1071
>>>>>>>>>> [0]PETSC ERROR: #5 KSPSetUp() at /home/conda/feedstock_root/build_artifacts/petsc_1728030599661/work/src/ksp/ksp/interface/itfunc.c:415
>>>>>>>>>> [0]PETSC ERROR: #6 KSPSolve_Private() at /home/conda/feedstock_root/build_artifacts/petsc_1728030599661/work/src/ksp/ksp/interface/itfunc.c:826
>>>>>>>>>> [0]PETSC ERROR: #7 KSPSolve() at /home/conda/feedstock_root/build_artifacts/petsc_1728030599661/work/src/ksp/ksp/interface/itfunc.c:1075
>>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>>
>>>
>>
>
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