[petsc-users] ex19: Segmentation Violation when run with MUMPS on MacOS (arm64)

[Satish Balay]

I'll just note - I can reproduce with:

petsc at npro petsc.x % ./configure --download-mpich --download-mumps --download-scalapack && make && make check 

And then - the following work fine for me:

petsc at npro petsc.x % ./configure --download-mpich --download-mumps --download-scalapack COPTFLAGS=-O0 FOPTFLAGS=-O0 LDFLAGS=-Wl,-ld_classic && make && make check
<snip>
    CLINKER arch-darwin-c-debug/lib/libpetsc.3.021.0.dylib
   DSYMUTIL arch-darwin-c-debug/lib/libpetsc.3.021.0.dylib
=========================================
Now to check if the libraries are working do:
make PETSC_DIR=/Users/petsc/petsc.x PETSC_ARCH=arch-darwin-c-debug check
=========================================
Running PETSc check examples to verify correct installation
Using PETSC_DIR=/Users/petsc/petsc.x and PETSC_ARCH=arch-darwin-c-debug
C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI process
C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI processes
C/C++ example src/snes/tutorials/ex19 run successfully with MUMPS
Fortran example src/snes/tutorials/ex5f run successfully with 1 MPI process
Completed PETSc check examples
petsc at npro petsc.x %

petsc at npro petsc.z % ./configure --download-openmpi=https://urldefense.us/v3/__https://download.open-mpi.org/release/open-mpi/v5.0/openmpi-5.0.3rc1.tar.bz2__;!!G_uCfscf7eWS!adsQx6TTtuIrMPz2ZorSv0iNPff5Fm5aFUi4i9n_E7v3GfAc8XCDtrlfVFyfPEgDFe4lKLL1XzkJ3c_97YoeukE$  --download-mumps --download-scalapack && make && make check
<snip>
   DSYMUTIL arch-darwin-c-debug/lib/libpetsc.3.021.0.dylib
=========================================
Now to check if the libraries are working do:
make PETSC_DIR=/Users/petsc/petsc.z PETSC_ARCH=arch-darwin-c-debug check
=========================================
Running PETSc check examples to verify correct installation
Using PETSC_DIR=/Users/petsc/petsc.z and PETSC_ARCH=arch-darwin-c-debug
C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI process
C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI processes
C/C++ example src/snes/tutorials/ex19 run successfully with MUMPS
Fortran example src/snes/tutorials/ex5f run successfully with 1 MPI process
Completed PETSc check examples
petsc at npro petsc.z % 

[however parmmg and pastix are failing to build with openmpi]

And I thought this worked for me yesterday - but I see failures now.

./configure --download-bison --download-chaco --download-ctetgen --download-eigen --download-fftw --download-hdf5 --download-hpddm --download-hwloc --download-hwloc-configure-arguments=--disable-opencl --download-hypre --download-libpng --download-metis --download-mmg --download-mpich --download-mpich-configure-arguments=--disable-opencl --download-mumps --download-netcdf --download-openblas --download-openblas-make-options="'USE_THREAD=0 USE_LOCKING=1 USE_OPENMP=0'" --download-parmmg --download-pastix --download-pnetcdf --download-pragmatic --download-ptscotch --download-scalapack --download-slepc --download-suitesparse --download-superlu_dist --download-tetgen --download-triangle --with-c2html=0 --with-debugging=1 --with-fortran-bindings=0 --with-shared-libraries=1 --with-x=0 --with-zlib --COPTFLAGS=-O0 --FOPTFLAGS=-O0 --LDFLAGS=-Wl,-ld_classic --with-clean

Satish

On Sat, 30 Mar 2024, Barry Smith wrote:

> 
>   Can you check the value of IRHSCOMP in the debugger? Using gdb as the debugger may work better for this. 
> 
>   Barry
> 
> 
> > On Mar 30, 2024, at 3:46 AM, zeyu xia <xiazeyu01 at gmail.com> wrote:
> > 
> > This Message Is From an External Sender
> > This message came from outside your organization.
> > Hi! Thanks for your reply.
> > 
> > There still exist some problems, as seen in the files 'configure.log', 'make check3.txt', and 'debug.txt' in the attachment. Particularly, the file 'debug.txt' contains the output of bt command of lldb.
> > 
> > Thanks for your attention.
> > 
> > Best regards,
> > Zeyu Xia
> > 
> > 
> > Satish Balay <balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>> 于2024年3月30日周六 02:52写道：
> >> I'm able to reproduce this error on a slightly older xcode [but don't know why this issue comes up]
> >> 
> >> > Apple clang version 15.0.0 (clang-1500.1.0.2.5)
> >> 
> >> Can you try using the additional configure options (along with LDFLAGS=-Wl,-ld_classic)  and see if it works?
> >> 
> >> COPTFLAGS=-O0 FOPTFLAGS=-O0
> >> 
> >> Satish
> >> 
> >> On Fri, 29 Mar 2024, zeyu xia wrote:
> >> 
> >> > Hi! I am grateful for your prompt response.
> >> > 
> >> > I follow your suggestions, and however, it still does not work. For the
> >> > related information please find the files 'make check2.txt' and
> >> > 'configure.log' in the attachment.
> >> > 
> >> > If possible, please do me a favor again. Thanks for your patience.
> >> > 
> >> > Best wishes,
> >> > Zeyu Xia
> >> > 
> >> > 
> >> > Satish Balay <balay at mcs.anl.gov <mailto:balay at mcs.anl.gov>> 于2024年3月29日周五 23:48写道：
> >> > 
> >> > > Could you:
> >> > >
> >> > > - reinstall brew after the xcode upgrade (not just update)
> >> > > https://urldefense.us/v3/__https://petsc.org/main/install/install/*installing-on-macos__;Iw!!G_uCfscf7eWS!dGItos-D58VSJn4kOlKy2TEX-PWhflbWfNuM0zqhEXbGniD5S13iWCxgBmg9wYk4OrSwaP6jjzANIHN1ZHATKXE$
> >> > > - not use --LDFLAGS=-Wl,-ld_classic
> >> > >
> >> > > And see if the problem persists?
> >> > >
> >> > > Satish
> >> > >
> >> > > On Fri, 29 Mar 2024, zeyu xia wrote:
> >> > >
> >> > > > Dear PETSc team:
> >> > > >
> >> > > >         Recently I installed firedrake on MacOS (arm64) with the latest
> >> > > > Xcode, and there seems some error with mumps. I ran two times of the
> >> > > > command `make check`. The first time it just output wrong results, and
> >> > > the
> >> > > > second time it raised an error with Segmentation Violation. Please see
> >> > > the
> >> > > > files “make check.txt” and “configure.log” in the attachment.
> >> > > >
> >> > > >         I will certainly be happy and grateful if you can take some time
> >> > > to
> >> > > > deal with this problem. Thanks for your patience.
> >> > > >
> >> > > > Best wishes,
> >> > > > Zeyu Xia
> >> > > >
> >> > >
> >> > 
> > <make check3.txt><configure.tar.gz><debug.txt>
> 
>