[petsc-users] Install PETSc with option `--with-shared-libraries=1` failed on MacOS
Zongze Yang
yangzongze at gmail.com
Sun Mar 17 09:06:48 CDT 2024
Understood. Thank you for your advice.
Best wishes,
Zongze
> On 17 Mar 2024, at 22:04, Barry Smith <bsmith at petsc.dev> wrote:
>
>
> I would just avoid the --download-openblas option. The BLAS/LAPACK provided by Apple should perform fine, perhaps even better than OpenBLAS on your system.
>
>
>> On Mar 17, 2024, at 9:58 AM, Zongze Yang <yangzongze at gmail.com> wrote:
>>
>> This Message Is From an External Sender
>> This message came from outside your organization.
>> Adding the flag `--download-openblas-make-options=TARGET=GENERIC` did not resolve the issue. The same error persisted.
>>
>> Best wishes,
>> Zongze
>>
>>> On 17 Mar 2024, at 20:58, Pierre Jolivet <pierre at joliv.et <mailto:pierre at joliv.et>> wrote:
>>>
>>>
>>>
>>>> On 17 Mar 2024, at 1:04 PM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com>> wrote:
>>>>
>>>> Thank you for providing the instructions. I try the first option.
>>>>
>>>> Now, the error of the configuration is related to OpenBLAS.
>>>> Add `--CFLAGS=-Wno-int-conversion` to configure command resolve this. Should this be reported to OpenBLAS? Or need to fix the configure in petsc?
>>>
>>> I see our linux-opt-arm runner is using the additional flag '--download-openblas-make-options=TARGET=GENERIC', could you maybe try to add that as well?
>>> I don’t think there is much to fix on our end, OpenBLAS has been very broken lately on arm (current version is 0.3.26 but we can’t update because there is a huge performance regression which makes the pipeline timeout).
>>>
>>> Thanks,
>>> Pierre
>>>
>>>>
>>>> The configure.log is attached. The errors are show below:
>>>> ```
>>>> src/lapack_wrappers.c:570:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>>> RELAPACK_sgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>>> ^~~~
>>>> &
>>>> src/../inc/relapack.h:74:216: note: passing argument to parameter here
>>>> void RELAPACK_sgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const float *, const float *, const blasint *, const float *, const blasint *, const float *, float *, const blasint *);
>>>> ^
>>>> src/lapack_wrappers.c:583:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>>> RELAPACK_dgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>>> ^~~~
>>>> &
>>>> src/../inc/relapack.h:75:221: note: passing argument to parameter here
>>>> void RELAPACK_dgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const double *, const double *, const blasint *, const double *, const blasint *, const double *, double *, const blasint *);
>>>> ^
>>>> src/lapack_wrappers.c:596:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>>> RELAPACK_cgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>>> ^~~~
>>>> &
>>>> src/../inc/relapack.h:76:216: note: passing argument to parameter here
>>>> void RELAPACK_cgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const float *, const float *, const blasint *, const float *, const blasint *, const float *, float *, const blasint *);
>>>> ^
>>>> src/lapack_wrappers.c:609:81: error: incompatible integer to pointer conversion passing 'blasint' (aka 'int') to parameter of type 'const blasint *' (aka 'const int *'); take the address with & [-Wint-conversion]
>>>> RELAPACK_zgemmt(uplo, transA, transB, n, k, alpha, A, ldA, B, ldB, beta, C, info);
>>>> ^~~~
>>>> &
>>>> src/../inc/relapack.h:77:221: note: passing argument to parameter here
>>>> void RELAPACK_zgemmt(const char *, const char *, const char *, const blasint *, const blasint *, const double *, const double *, const blasint *, const double *, const blasint *, const double *, double *, const blasint *);
>>>> ^
>>>> 4 errors generated.
>>>> ```
>>>>
>>>> Best wishes,
>>>> Zongze
>>>>
>>>> <configure.log.tar.gz>
>>>>
>>>>> On 17 Mar 2024, at 18:48, Pierre Jolivet <pierre at joliv.et <mailto:pierre at joliv.et>> wrote:
>>>>>
>>>>> You need this MR https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7365__;!!G_uCfscf7eWS!bg2LIKBxOm1exSNScy6-lmAt_UvmhaKaLt_8vup8lDi5cObA-l03LzqWnOPP66bCqEr3RCS9zwx63Bsz7PbEjhhM$ <https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7365__;!!G_uCfscf7eWS!eCQRfbol7FDQiO0o78iDit2saij_ydIUtCfRQnsQAt-h_YcXr2Yi2BFnFnqHZp0FO3Lhpyr2RKdHZ-T-OF94HpwQ$>
>>>>> main has been broken for macOS since https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7341__;!!G_uCfscf7eWS!bg2LIKBxOm1exSNScy6-lmAt_UvmhaKaLt_8vup8lDi5cObA-l03LzqWnOPP66bCqEr3RCS9zwx63Bsz7M0XuMO3$ <https://urldefense.us/v3/__https://gitlab.com/petsc/petsc/-/merge_requests/7341__;!!G_uCfscf7eWS!eCQRfbol7FDQiO0o78iDit2saij_ydIUtCfRQnsQAt-h_YcXr2Yi2BFnFnqHZp0FO3Lhpyr2RKdHZ-T-OIhlJwLx$>, so the alternative is to revert to the commit prior.
>>>>> It should work either way.
>>>>>
>>>>> Thanks,
>>>>> Pierre
>>>>>
>>>>>> On 17 Mar 2024, at 11:31 AM, Zongze Yang <yangzongze at gmail.com <mailto:yangzongze at gmail.com>> wrote:
>>>>>>
>>>>>>
>>>>>> This Message Is From an External Sender
>>>>>> This message came from outside your organization.
>>>>>> Hi, PETSc Team,
>>>>>>
>>>>>> I am trying to install petsc with the following configuration
>>>>>> ```
>>>>>> ./configure \
>>>>>> --download-bison \
>>>>>> --download-mpich \
>>>>>> --download-mpich-configure-arguments=--disable-opencl \
>>>>>> --download-hwloc \
>>>>>> --download-hwloc-configure-arguments=--disable-opencl \
>>>>>> --download-openblas \
>>>>>> --download-openblas-make-options="'USE_THREAD=0 USE_LOCKING=1 USE_OPENMP=0'" \
>>>>>> --with-shared-libraries=1 \
>>>>>> --with-fortran-bindings=0 \
>>>>>> --with-zlib \
>>>>>> LDFLAGS=-Wl,-ld_classic
>>>>>> ```
>>>>>>
>>>>>> The log shows that
>>>>>> ```
>>>>>> Exhausted all shared linker guesses. Could not determine how to create a shared library!
>>>>>> ```
>>>>>>
>>>>>> I recently updated the system and Xcode, as well as homebrew.
>>>>>>
>>>>>> The configure.log is attached.
>>>>>>
>>>>>> Thanks for your attention to this matter.
>>>>>>
>>>>>> Best wishes,
>>>>>> Zongze
>>>>>> <configure.log.tar.gz>
>
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