[petsc-users] Petsc Build error

Thu Jun 13 17:47:13 CDT 2024

  Please send configure.log and make.log to petsc-maint at mcs.anl.gov without the exact details we cannot determine what has gone wrong.

> On Jun 13, 2024, at 6:33 PM, s.pradeep kumar <spradeepmahadeek at gmail.com> wrote:
> 
> This Message Is From an External Sender
> This message came from outside your organization.
> Dear Petsc Development Team,
> 
> I am encountering an issue while trying to build Petsc library in our Cray Cluster.  Despite loading appropriate gcc and cray-mpich modules and successfully configuring Petsc, I receive the following error (see A1). I have also attached petsc configure statement (see A2) and snippet of configure log (see A3).
> 
> Could you please provide assistance in resolving this build issue? Any insights or additional steps I might take to diagnose and fix the problem would be greatly appreciated.
> 
> Thank you for your support
> 
> Regards,
> 
> Pradeep
> 
>  
>  
> 
> A1.Error from make.log:
> 
>  
> ==========================================
> /usr/bin/gmake --print-directory -f gmakefile -j88 -l272.0 --output-sync=recurse V= libs
> gmake[3]: *** No rule to make target '/$NETWORK$/users/$USERNAME$/NumLib/petsc-3.21.1/src/sys/f90-mod/petscsysmod.F90', needed by 'gnu-opt/obj/src/sys/f90-mod/petscsysmod.o'.  Stop.
> gmake[2]: *** [/users/$USERNAME$/NumLib/petsc-3.21.1/lib/petsc/conf/rules_doc.mk:5 <https://urldefense.us/v3/__http://rules_doc.mk:5__;!!G_uCfscf7eWS!bzt6Ug_Q99IAVZ3YC6uReptvtUbsmvjz5BTANuRoXR9Ap8p-lmK9vgI05Bc1978HvYN2t63u7h4OQCvKWLfZ2bAtjgAjZzjQ$>: libs] Error 2
> **************************ERROR*************************************
>   Error during compile, check gnu-opt/lib/petsc/conf/make.log
>   Send it and gnu-opt/lib/petsc/conf/configure.log to petsc-maint at mcs.anl.gov <mailto:petsc-maint at mcs.anl.gov>
> ********************************************************************
> Finishing make run at Thu, 13 Jun 2024 11:42:44 -0600
> 
> A2.Configure Statement:
> 
> ./configure --with-scalar-type=real --with-precision=double --download-metis=$metis_path --download-metis-use-doubleprecision=1  --download-parmetis=$parmetis_path  --with-cmake=1  --with-mpi-dir=$MPI_DIR --download-fblaslapack=$fblaslapack_path --with-debugging=0 COPTFLAGS=-O2 FOPTFLAGS=-O2
> 
> Where the paths are defined:
> 
> fblaslapack_path="/users/$USERNAME$/NumLib/ExternalPackages/petsc-pkg-fblaslapack-e8a03f57d64c.tar.gz"
> metis_path="/users/$USERNAME$/NumLib/ExternalPackages/petsc-pkg-metis-69fb26dd0428.tar.gz"
> parmetis_path="/users/$USERNAME$/NumLib/ExternalPackages/petsc-pkg-parmetis-f5e3aab04fd5.tar.gz"
> 
> MPI_DIR=${CRAY_MPICH_PREFIX}
> 
>  
>  
>  
> A3. Snippets From configure.log:
>  
> ---------------------------------------------------------------------------------------------
> PETSc:
>   Build         : Set default architecture to gnu-opt in lib/petsc/conf/petscvariables
>   File creation : Created gnu-opt/lib/petsc/conf/reconfigure-gnu-opt.py for automatic reconfiguration
> Framework:
>   RDict update  : Substitutions were stored in RDict with parent None
>   File creation : Created makefile configure header gnu-opt/lib/petsc/conf/petscvariables
>   File creation : Created makefile configure header gnu-opt/lib/petsc/conf/petscrules
>   File creation : Created configure header gnu-opt/include/petscconf.h
>   File creation : Created C specific configure header gnu-opt/include/petscfix.h
>   File creation : Created configure pkg header gnu-opt/include/petscpkg_version.h
> Compilers:
>   C Compiler:         /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpicc  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -O2
>     Version: gcc (GCC) 12.2.0 20220819 (HPE)
>   C++ Compiler:         /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpicxx  -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-psabi -fstack-protector -fvisibility=hidden -g -O  -std=gnu++20 -fPIC
>     Version: g++ (GCC) 12.2.0 20220819 (HPE)
>   Fortran Compiler:         /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpif90  -fPIC -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -O2
>     Version: GNU Fortran (GCC) 12.2.0 20220819 (HPE)
> Linkers:
>   Shared linker:   /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpicc  -shared  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -O2
>   Dynamic linker:   /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/bin/mpicc  -shared  -fPIC -Wall -Wwrite-strings -Wno-unknown-pragmas -Wno-lto-type-mismatch -Wno-stringop-overflow -fstack-protector -fvisibility=hidden -O2
>   Libraries linked against:   -lquadmath -ldl
> BlasLapack:
>   Libraries:  -Wl,-rpath,/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -L/users/$USERNAME$ /NumLib/petsc-3.21.1/gnu-opt/lib -lflapack -lfblas
>   uses 4 byte integers
> MPI:
>   Version:    3
>   Includes:   -I/opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3/include
>   mpiexec: /bin/false
>   Implementation: mpich3
>   MPICH_NUMVERSION: 30400002
> X:
>   Libraries:  -lX11
> python:
>   Executable: /usr/bin/python3
> pthread:
>   Libraries:  -lpthread
> cmake:
>   Version:    3.23.1
>   Executable: /usr/projects/hpcsoft/tce/23-03/cray-sles15-x86_64_v3-slingshot-none/packages/cmake/cmake-3.23.1/bin/cmake
> fblaslapack:
> metis:
>   Version:    5.1.0
>   Includes:   -I/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/include
>   Libraries:  -Wl,-rpath,/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -L/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -lmetis
> parmetis:
>   Version:    4.0.3
>   Includes:   -I/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/include
>   Libraries:  -Wl,-rpath,/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -L/users/$USERNAME$/NumLib/petsc-3.21.1/gnu-opt/lib -lparmetis
> regex:
> bison:
>   Version:    3.0
>   Executable: /usr/bin/bison
> PETSc:
>   Language used to compile PETSc: C
>   PETSC_ARCH: gnu-opt
>   PETSC_DIR: /users/$USERNAME$/NumLib/petsc-3.21.1
>   Prefix: <inplace installation>
>   Scalar type: real
>   Precision: double
>   Support for __float128
>   Integer size: 4 bytes
>   Single library: yes
>   Shared libraries: yes
>   Memory alignment from malloc(): 16 bytes
>   Using GNU make: /usr/bin/gmake
> xxx=======================================================================================xxx
>  Configure stage complete. Now build PETSc libraries with:
>    make PETSC_DIR=/users/$USERNAME$/NumLib/petsc-3.21.1 PETSC_ARCH=gnu-opt all
> xxx=======================================================================================xxx
> ================================================================================
> Finishing configure run at Thu, 13 Jun 2024 11:42:35 -0600

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