[petsc-users] Error in configuring PETSc with Cygwin on Windows by using Intel MPI

Tue Nov 14 11:17:42 CST 2023

   You can check the build was successful manually.

    cd src/snes/tutorials
    make ex19
    mpiexec -n 1 ./ex19 -snes_monitor 

> On Nov 14, 2023, at 11:46 AM, 程奔 <ctchengben at mail.scut.edu.cn> wrote:
> 
> Hi Barry,
> 
> Thanks for the suggestion.  It seems good after I change complier to english.Then I  begin to configure and make it. 
> But unfortunate, when I try to  make PETSC_DIR=/cygdrive/g/mypetsc/petsc-3.19.2 PETSC_ARCH=arch-mswin-c-debug check
> It just happen to an error:
> Running check examples to verify correct installation
> Using PETSC_DIR=/cygdrive/g/mypetsc/petsc-3.19.2 and PETSC_ARCH=arch-mswin-c-debug
> /usr/bin/bash: -c: line 9: unexpected EOF while looking for matching `"'
> make[1]: *** [makefile:123: check] Error 2
> make: *** [GNUmakefile:17: check] Error 2
> 
> 
> So I send email to look for you help, and configure.log is attached.
> 
> 
> sinserely,
> Cheng.
> 
> 
> 
> 
> -----原始邮件-----
> 发件人: "Barry Smith" <bsmith at petsc.dev <mailto:bsmith at petsc.dev>>
> 发送时间: 2023-11-13 11:19:23 (星期一)
> 收件人: 程奔 <ctchengben at mail.scut.edu.cn <mailto:ctchengben at mail.scut.edu.cn>>
> 抄送: petsc-users <petsc-users at mcs.anl.gov <mailto:petsc-users at mcs.anl.gov>>
> 主题: Re: [petsc-users] Error in configuring PETSc with Cygwin on Windows by using Intel MPI
> 
> 
>    The configure is failing while testing the Intel Fortran compiler
> 
> Executing: /cygdrive/g/mypetsc/petsc-3.19.2/lib/petsc/bin/win32fe/win_ifort -c -o /tmp/petsc-61cxbt4e/config.setCompilers/conftest.o -I/tmp/petsc-61cxbt4e/config.compilers -I/tmp/petsc-61cxbt4e/config.setCompilers  -MT -Z7 -Od  /tmp/petsc-61cxbt4e/config.setCompilers/conftest.F90 
> Successful compile:
> Source:
>       program main
> 
>       end
> 
> Executing: /cygdrive/g/mypetsc/petsc-3.19.2/lib/petsc/bin/win32fe/win_ifort  -o /tmp/petsc-61cxbt4e/config.setCompilers/conftest.exe    -MT -Z7 -Od /tmp/petsc-61cxbt4e/config.setCompilers/conftest.o  
> stdout: LINK : û���ҵ� G:\cygwin\tmp\PE9718~1\CONFIG~1.SET\conftest.exe ����һ����������û��������������ִ����ȫ����
> Linker output before filtering:
> LINK : û���ҵ� G:\cygwin\tmp\PE9718~1\CONFIG~1.SET\conftest.exe ����һ����������û��������������ִ����ȫ����
> Linker output after filtering:
> LINK : û���ҵ� G:\cygwin\tmp\PE9718~1\CONFIG~1.SET\conftest.exe ����һ����������û��������������ִ����ȫ����
> 
> Can you please try changing the compiler to print its messages in English and then attempt to compile the trivial program above as indicated and send all the output.
> 
> Barry
> 
> 
>> On Nov 12, 2023, at 9:02 PM, 程奔 <ctchengben at mail.scut.edu.cn <mailto:ctchengben at mail.scut.edu.cn>> wrote:
>> 
>> Sorry for replying to your email so late, and I find configure.log 
>> 
>> 
>> -----原始邮件-----
>> 发件人: "Barry Smith" <bsmith at petsc.dev <mailto:bsmith at petsc.dev>>
>> 发送时间: 2023-11-08 23:42:30 (星期三)
>> 收件人: 程奔 <ctchengben at mail.scut.edu.cn <mailto:ctchengben at mail.scut.edu.cn>>
>> 抄送: petsc-users at mcs.anl.gov <mailto:petsc-users at mcs.anl.gov>
>> 主题: Re: [petsc-users] Error in configuring PETSc with Cygwin on Windows by using Intel MPI
>> 
>> 
>>    Send the file $PETSC_ARCH/lib/petsc/conf/configure.log 
>> 
>> 
>> 
>>> On Nov 8, 2023, at 12:20 AM, 程奔 <ctchengben at mail.scut.edu.cn <mailto:ctchengben at mail.scut.edu.cn>> wrote:
>>> 
>>> Hello,
>>> Recently I try to install PETSc with Cygwin since I'd like to use PETSc with Visual Studio on Windows10 plateform.For the sake of clarity, I firstly list the softwares/packages used below:
>>> 1. PETSc: version 3.19.2
>>> 2. VS: version 2022 
>>> 3. Intel MPI: download Intel oneAPI Base Toolkit and HPC Toolkit
>>> 4. Cygwin: see the picture attatched (see picture cygwin)
>>> 
>>> 
>>> And the compiler option in configuration is:
>>>  ./configure --prefix=/cygdrive/g/mypetsc/petsc2023  --with-cc='win32fe cl' --with-fc='win32fe ifort' --with-cxx='win32fe cl' --with-shared-libraries=0 
>>> --with-mpi-include=/cygdrive/g/Intel/oneAPI/mpi/2021.10.0/include 
>>> --with-mpi-lib=/cygdrive/g/Intel/oneAPI/mpi/2021.10.0/libTherefore, I write this e-mail to look for your help.
>>> /release/impi.lib 
>>> --with-mpiexec=/cygdrive/g/Intel/oneAPI/mpi/2021.10.0/bin/mpiexec -localonly
>>> 
>>> 
>>> 
>>> 
>>> but there return an error:
>>> *********************************************************************************************
>>>                               OSError while running ./configure
>>> ---------------------------------------------------------------------------------------------
>>>   Cannot run executables created with FC. If this machine uses a batch system
>>>   to submit jobs you will need to configure using ./configure with the additional option
>>>   --with-batch.
>>>   Otherwise there is problem with the compilers. Can you compile and run code with your
>>>   compiler '/cygdrive/g/mypetsc/petsc-3.19.2/lib/petsc/bin/win32fe/win32fe ifort'?
>>>   See https://petsc.org/release/faq/#error-libimf
>>> *********************************************************************************************
>>> 
>>> 
>>> 
>>> Then I try to open configure.log in petsc, but there turnout an error that I can't open it.(see picture 1)
>>> 
>>> And then I right click on properties and click safety,it just turnout "The permissions on test directory are incorrectly ordered.which may cause some entries to be ineffective." (see picture 2)
>>> 
>>> And it also likely seen “NULL SID” as the top entry in permission lists.(see picture 3)
>>> 
>>> Then i follow this blog(https://blog.dhampir.no/content/forcing-cygwin-to-create-sane-permissions-on-windows) to edit /etc/fstab in Cygwin, and add “noacl” to the mount options for /cygdrive.
>>> 
>>> But it's not working.
>>> 
>>> So I can't sent configure.log to you guys, it seems cygwin that installed in my computer happened to some problem.
>>> 
>>> Mayebe the error happened in the configure on petsc just because of this reason.
>>> 
>>> 
>>> 
>>> So I wrrit this email to report my problem and ask for your help.  
>>> 
>>> 
>>> Looking forward your reply!
>>> 
>>> 
>>> sinserely,
>>> Cheng.
>>> <cygwin.png><picture1.jpg><picture2.png><picture3.jpg>
>> 
> 
> 
> 

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