[petsc-users] Compiling PETSC with Intel OneAPI compilers and OpenMPI

[Vanella, Marcos (Fed)]

Thank you Matt I'll try this and let you know.
Marcos
________________________________
From: Matthew Knepley <knepley at gmail.com>
Sent: Monday, May 15, 2023 12:08 PM
To: Vanella, Marcos (Fed) <marcos.vanella at nist.gov>
Cc: petsc-users at mcs.anl.gov <petsc-users at mcs.anl.gov>
Subject: Re: [petsc-users] Compiling PETSC with Intel OneAPI compilers and OpenMPI

On Mon, May 15, 2023 at 11:19 AM Vanella, Marcos (Fed) via petsc-users <petsc-users at mcs.anl.gov<mailto:petsc-users at mcs.anl.gov>> wrote:
Hello, I'm trying to compile the PETSc library version 3.19.1 with OpenMPI 4.1.4 and the OneAPI 2022 Update 2 Intel Compiler suite on a Mac with OSX Ventura 13.3.1.
I can compile PETSc in debug mode with this configure and make lines. I can run the PETSC tests, which seem fine.
When I compile the library in optimized mode, either using -O3 or O1, for example configuring with:

I hate to yell "compiler bug" when this happens, but it sure seems like one. Can you just use

  --with-debugging=0

without the custom COPTFLAGS, CXXOPTFLAGS, FOPTFLAGS? If that works, it is almost
certainly a compiler bug. If not, then we can go in the debugger and see what is failing.

  Thanks,

    Matt

$ ./configure --prefix=/opt/petsc-oneapi22u3 --with-blaslapack-dir=/opt/intel/oneapi/mkl/2022.2.1 COPTFLAGS='-m64 -O1 -g -diag-disable=10441' CXXOPTFLAGS='-m64 -O1 -g -diag-disable=10441' FOPTFLAGS='-m64 -O1 -g' LDFLAGS='-m64' --with-debugging=0 --with-shared-libraries=0 --download-make

and using mpicc (icc), mpif90 (ifort) from  Open MPI, the static lib compiles. Yet, I see right off the bat this segfault error in the first PETSc example:

$ make PETSC_DIR=/Users/mnv/Documents/Software/petsc-3.19.1 PETSC_ARCH=arch-darwin-c-opt test
/Users/mnv/Documents/Software/petsc-3.19.1/arch-darwin-c-opt/bin/make --no-print-directory -f /Users/mnv/Documents/Software/petsc-3.19.1/gmakefile.test PETSC_ARCH=arch-darwin-c-opt PETSC_DIR=/Users/mnv/Documents/Software/petsc-3.19.1 test
/opt/intel/oneapi/intelpython/latest/bin/python3 /Users/mnv/Documents/Software/petsc-3.19.1/config/gmakegentest.py --petsc-dir=/Users/mnv/Documents/Software/petsc-3.19.1 --petsc-arch=arch-darwin-c-opt --testdir=./arch-darwin-c-opt/tests
Using MAKEFLAGS: --no-print-directory -- PETSC_ARCH=arch-darwin-c-opt PETSC_DIR=/Users/mnv/Documents/Software/petsc-3.19.1
         CC arch-darwin-c-opt/tests/sys/classes/draw/tests/ex1.o
In file included from /Users/mnv/Documents/Software/petsc-3.19.1/include/petscsys.h(44),
                 from /Users/mnv/Documents/Software/petsc-3.19.1/src/sys/classes/draw/tests/ex1.c(4):
/Users/mnv/Documents/Software/petsc-3.19.1/include/petscsystypes.h(68): warning #2621: attribute "warn_unused_result" does not apply here
  PETSC_ERROR_CODE_TYPEDEF enum PETSC_ERROR_CODE_NODISCARD {
                                ^

    CLINKER arch-darwin-c-opt/tests/sys/classes/draw/tests/ex1
       TEST arch-darwin-c-opt/tests/counts/sys_classes_draw_tests-ex1_1.counts
not ok sys_classes_draw_tests-ex1_1 # Error code: 139
#     [excess:98681] *** Process received signal ***
#     [excess:98681] Signal: Segmentation fault: 11 (11)
#     [excess:98681] Signal code: Address not mapped (1)
#     [excess:98681] Failing at address: 0x7f
#     [excess:98681] *** End of error message ***
#     --------------------------------------------------------------------------
#     Primary job  terminated normally, but 1 process returned
#     a non-zero exit code. Per user-direction, the job has been aborted.
#     --------------------------------------------------------------------------
#     --------------------------------------------------------------------------
#     mpiexec noticed that process rank 0 with PID 0 on node excess exited on signal 11 (Segmentation fault: 11).
#     --------------------------------------------------------------------------
 ok sys_classes_draw_tests-ex1_1 # SKIP Command failed so no diff

I see the same segfault error in all PETSc examples.
Any help is mostly appreciated, I'm starting to work with PETSc. Our plan is to use the linear solver from PETSc for the Poisson equation on our numerical scheme and test this on a GPU cluster. So also, any guideline on how to interface PETSc with a fortran code and personal experience is also most appreciated!

Marcos





--
What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
-- Norbert Wiener

https://www.cse.buffalo.edu/~knepley/<http://www.cse.buffalo.edu/~knepley/>
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