[petsc-users] Failing PETSc 3.19.2 compile using ICPC
Jacob Faibussowitsch
jacob.fai at gmail.com
Thu Jul 20 10:07:31 CDT 2023
Robert,
Try this branch jacobf/2023-07-20/icpc-compressed-pair-workaround/release and let me know if that worked.
Best regards,
Jacob Faibussowitsch
(Jacob Fai - booss - oh - vitch)
> On Jul 20, 2023, at 10:44, Barry Smith <bsmith at petsc.dev> wrote:
>
>
> Suitesparse provides good efficient sequential (non-MPI) sparse direct solvers. Probably a bit more efficient than the sequential sparse direct solvers built into PETSc. So it really depends on how you use PETSc to solve your linear systems, if you use iterative methods, such as algebraic multigrid then it doesn't matter.
>
>
>
>> On Jul 20, 2023, at 10:27 AM, Robert.Crockett at lamresearch.com wrote:
>>
>> Satish,
>> Unfortunately, --with-cxx-dialect=11 did not fix the problem.
>>
>> Can you or others on the list tell me the effect on solving large sparse real symmetric and unsymmetric problems, if --with-cxx=0 and suitesparse is not downloaded?
>> Thanks,
>> Robert
>>
>>
>> Confidential – Limited Access and Use
>> -----Original Message-----
>> From: Satish Balay <balay at mcs.anl.gov>
>> Sent: Wednesday, July 19, 2023 5:07 PM
>> To: Barry Smith <bsmith at petsc.dev>
>> Cc: Crockett, Robert <Robert.Crockett at lamresearch.com>; petsc-users at mcs.anl.gov
>> Subject: Re: [petsc-users] Failing PETSc 3.19.2 compile using ICPC
>>
>>
>> you can try --with-cxx-dialect=11 and see if that works.
>>
>> with -with-cxx=0 - --download-suitesparse [and other pkgs that require cxx] won't work - and would need to be installed separately
>>
>> Jacob,
>>
>> One more use case for --with-cxx-bindings=0
>>
>> Satish
>>
>> On Wed, 19 Jul 2023, Barry Smith wrote:
>>
>>>
>>> Do you need C++, you can configure --with-cxx=0 if you do not need it.
>>>
>>> You can also try the main branch of PETSc or slightly different versions of the compiler.
>>>
>>> Barry
>>>
>>>
>>>
>>>> On Jul 19, 2023, at 4:31 PM, Robert Crockett via petsc-users <petsc-users at mcs.anl.gov> wrote:
>>>>
>>>> Hello,
>>>> I am attempting to build PETSc using the 2018.5.274 Intel compiler suite on CentOS7. I get the below error messages.
>>>> See the attached for more information.
>>>> The file petscbuild.sh is the script used to configure and build The
>>>> file configure.log is output by PETSc The file log.petscbuild is the
>>>> output of the config & build script.
>>>>
>>>> Can you please help find a work-around?
>>>> Best,
>>>> Robert
>>>>
>>>> PS. Some related links I found in searching on this issue.
>>>> The first references a related compiler bug ticket opened with Intel, though I cannot tell if it was closed or if it applied to my compiler.
>>>> https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fco
>>>> mmunity.intel.com%2Ft5%2FIntel-C-Compiler%2FDefault-constructor-of-v
>>>> ariant-is-deleted%2Fm-p%2F1156212%3Fprofile.language%3Den&data=05%7C
>>>> 01%7CRobert.Crockett%40lamresearch.com%7C616797c1562a4487ab5008db889
>>>> c18bc%7C918079dbc9024e29b22c9764410d0375%7C0%7C0%7C63825397626768035
>>>> 8%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTi
>>>> I6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=aLTeNz0m6xZ4df8AyndNe
>>>> 38vqD16gbTfWuKHGw735%2BY%3D&reserved=0
>>>> https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fme
>>>> diatum.ub.tum.de%2Fdoc%2F1555265%2F1555265.pdf&data=05%7C01%7CRobert
>>>> .Crockett%40lamresearch.com%7C616797c1562a4487ab5008db889c18bc%7C918
>>>> 079dbc9024e29b22c9764410d0375%7C0%7C0%7C638253976267680358%7CUnknown
>>>> %7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiL
>>>> CJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=KfN8V%2BPnJs5kr5itDINRXfrFUOpRX3
>>>> Kok9OtAC4k1pg%3D&reserved=0
>>>>
>>>> Robert Crockett
>>>> Plasma Simulation Engineer | OCTO - Computational Products
>>>> P: 617.648.8349 M: 415.205.4567
>>>>
>>>> LAM RESEARCH
>>>> 4650 Cushing Pkwy, Fremont CA 94538 USA lamresearch.com
>>>> <https://www.lamresearch.com/> <image001.png>
>>>>
>>>> -----------------------------------------
>>>> Using C compile: /usr/local/petsc/r/bin/mpicc -o .o -c -wd1572
>>>> -Wno-unknown-pragmas -O3 -mtune=generic mpicc -show: icc -fPIC
>>>> -wd1572 -O3 -mtune=generic -I/usr/local/petsc/r/include
>>>> -L/usr/local/petsc/r/lib -Wl,-rpath -Wl,/usr/local/petsc/r/lib
>>>> -Wl,--enable-new-dtags -lmpi C compiler version: icc (ICC) 18.0.5
>>>> 20180823 Using C++ compile: /usr/local/petsc/r/bin/mpicxx -o .o -c
>>>> -wd1572 -O3 -mtune=generic -std=c++14
>>>> -I/usr/local/share/petsc/src/include
>>>> -I/usr/local/share/petsc/src/arch-linux-c-opt/include
>>>> -I/usr/local/petsc/r/include mpicxx -show: icpc -wd1572 -O3
>>>> -mtune=generic -std=c++14 -fPIC -I/usr/local/petsc/r/include
>>>> -L/usr/local/petsc/r/lib -lmpicxx -Wl,-rpath
>>>> -Wl,/usr/local/petsc/r/lib -Wl,--enable-new-dtags -lmpi
>>>> C++ compiler version: icpc (ICC) 18.0.5 20180823
>>>> Using Fortran compile: /usr/local/petsc/r/bin/mpif90 -o .o -c -Wall -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch -Wno-unused-dummy-argument -O3 -mtune=generic -I/usr/local/share/petsc/src/include -I/usr/local/share/petsc/src/arch-linux-c-opt/include -I/usr/local/petsc/r/include
>>>> mpif90 -show: gfortran -fPIC -ffree-line-length-none
>>>> -ffree-line-length-0 -Wno-lto-type-mismatch -O3 -mtune=generic
>>>> -I/usr/local/petsc/r/include -I/usr/local/petsc/r/include
>>>> -L/usr/local/petsc/r/lib -lmpifort -Wl,-rpath
>>>> -Wl,/usr/local/petsc/r/lib -Wl,--enable-new-dtags -lmpi Fortran
>>>> compiler version: GNU Fortran (GCC) 7.3.1 20180303 (Red Hat 7.3.1-5)
>>>> -----------------------------------------
>>>> Using C/C++ linker: /usr/local/petsc/r/bin/mpicc Using C/C++ flags:
>>>> -wd1572 -Wno-unknown-pragmas -O3 -mtune=generic Using Fortran
>>>> linker: /usr/local/petsc/r/bin/mpif90 Using Fortran flags: -Wall
>>>> -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch
>>>> -Wno-unused-dummy-argument -O3 -mtune=generic
>>>> -----------------------------------------
>>>> Using system modules:
>>>> Using mpi.h: # 1 "/usr/local/petsc/r/include/mpi.h" 1
>>>> -----------------------------------------
>>>> Using libraries:
>>>> -Wl,-rpath,/usr/local/share/petsc/src/arch-linux-c-opt/lib
>>>> -L/usr/local/share/petsc/src/arch-linux-c-opt/lib
>>>> -Wl,-rpath,/usr/local/petsc/r/lib -L/usr/local/petsc/r/lib
>>>> -Wl,-rpath,/opt/rh/devtoolset-7/root/usr/lib/gcc/x86_64-redhat-linux
>>>> /7 -L/opt/rh/devtoolset-7/root/usr/lib/gcc/x86_64-redhat-linux/7
>>>> -Wl,-rpath,/opt/rh/devtoolset-7/root/usr/lib64
>>>> -L/opt/rh/devtoolset-7/root/usr/lib64
>>>> -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_librar
>>>> ies_2018.5.274/linux/ipp/lib/intel64
>>>> -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.
>>>> 5.274/linux/ipp/lib/intel64
>>>> -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_librar
>>>> ies_2018.5.274/linux/compiler/lib/intel64_lin
>>>> -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.
>>>> 5.274/linux/compiler/lib/intel64_lin
>>>> -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_librar
>>>> ies_2018.5.274/linux/mkl/lib/intel64_lin
>>>> -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.
>>>> 5.274/linux/mkl/lib/intel64_lin
>>>> -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_librar
>>>> ies_2018.5.274/linux/tbb/lib/intel64/gcc4.7
>>>> -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.
>>>> 5.274/linux/tbb/lib/intel64/gcc4.7
>>>> -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_librar
>>>> ies_2018.5.274/linux/daal/lib/intel64_lin
>>>> -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.
>>>> 5.274/linux/daal/lib/intel64_lin
>>>> -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_librar
>>>> ies_2018.5.274/linux/tbb/lib/intel64_lin/gcc4.4
>>>> -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.
>>>> 5.274/linux/tbb/lib/intel64_lin/gcc4.4
>>>> -Wl,-rpath,/opt/rh/devtoolset-7/root/usr/lib
>>>> -L/opt/rh/devtoolset-7/root/usr/lib -lpetsc -lspqr -lumfpack -lklu
>>>> -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig
>>>> -lscalapack -lsuperlu -lf2clapack -lf2cblas -lptesmumps
>>>> -lptscotchparmetisv3 -lptscotch -lptscotcherr -lesmumps -lscotch
>>>> -lscotcherr -lpthread -lmetis -ldl -lmpifort -lmpi -lgfortran -lm
>>>> -lgfortran -lm -lgcc_s -lquadmath -ldl -lmpicxx -lmpi -limf -lsvml
>>>> -lirng -lstdc++ -lm -lipgo -ldecimal -lcilkrts -lgcc_s -lirc -lirc_s
>>>> -lrt -ldl -lmpicxx -lmpi -limf -lsvml -lirng -lstdc++ -lm -lipgo
>>>> -ldecimal -lcilkrts -lgcc_s -lirc -lirc_s -ldl
>>>> ------------------------------------------
>>>> Using mpiexec: /usr/local/petsc/r/bin/mpiexec
>>>> ------------------------------------------
>>>> Using MAKE: /usr/bin/gmake
>>>> Default MAKEFLAGS: MAKE_NP:4 MAKE_LOAD:6.0 MAKEFLAGS:
>>>> --no-print-directory -- PETSC_ARCH=arch-linux-c-opt
>>>> PETSC_DIR=/usr/local/share/petsc/src
>>>> ==========================================
>>>> /usr/bin/gmake --print-directory -f gmakefile -j4 -l6.0 V= libs
>>>> /opt/mambaforge/bin/python3 ./config/gmakegen.py --petsc-arch=arch-linux-c-opt
>>>> CXX arch-linux-c-opt/obj/sys/objects/device/impls/host/hostcontext.o
>>>> CXX arch-linux-c-opt/obj/sys/objects/device/impls/host/hostdevice.o
>>>> CXX arch-linux-c-opt/obj/sys/objects/device/interface/dcontext.o
>>>> CXX arch-linux-c-opt/obj/sys/objects/device/interface/device.o
>>>> CXX arch-linux-c-opt/obj/sys/objects/device/interface/global_dcontext.o
>>>> CXX
>>>> arch-linux-c-opt/obj/sys/objects/device/interface/mark_dcontext.o
>>>> /usr/local/share/petsc/src/include/petsc/private/cpp/object_pool.hpp(930): error: the default constructor of "Petsc::util::compressed_pair<PetscDeviceContextConstructor, Petsc::memory::PoolAllocator>" cannot be referenced -- it is a deleted function
>>>> util::compressed_pair<constructor_type, allocator_type> pair_{};
>>>> ^
>>>> detected during instantiation of class "Petsc::ObjectPool<T, Constructor> [with T=_p_PetscDeviceContext, Constructor=PetscDeviceContextConstructor]" at line 61 of "/usr/local/share/petsc/src/src/sys/objects/device/interface/dcontext.cxx"
>>>>
>>>> CXX
>>>> arch-linux-c-opt/obj/sys/objects/device/interface/memory.o
>>>> compilation aborted for
>>>> /usr/local/share/petsc/src/src/sys/objects/device/interface/dcontext
>>>> .cxx (code 2)
>>>> gmake[3]: ***
>>>> [arch-linux-c-opt/obj/sys/objects/device/interface/dcontext.o] Error
>>>> 2
>>>> gmake[3]: *** Waiting for unfinished jobs....
>>>> /usr/local/share/petsc/src/include/petsc/private/cpp/object_pool.hpp(930): error: the default constructor of "Petsc::util::compressed_pair<PetscEventConstructor, Petsc::memory::PoolAllocator>" cannot be referenced -- it is a deleted function
>>>> util::compressed_pair<constructor_type, allocator_type> pair_{};
>>>> ^
>>>> detected during instantiation of class "Petsc::ObjectPool<T, Constructor> [with T=_n_PetscEvent, Constructor=PetscEventConstructor]" at line 54 of "/usr/local/share/petsc/src/src/sys/objects/device/interface/mark_dcontext.cxx"
>>>>
>>>> compilation aborted for
>>>> /usr/local/share/petsc/src/src/sys/objects/device/interface/mark_dco
>>>> ntext.cxx (code 2)
>>>> gmake[3]: ***
>>>> [arch-linux-c-opt/obj/sys/objects/device/interface/mark_dcontext.o]
>>>> Error 2
>>>> gmake[2]: *** [libs] Error 2
>>>> **************************ERROR*************************************
>>>> Error during compile, check arch-linux-c-opt/lib/petsc/conf/make.log
>>>> Send it and arch-linux-c-opt/lib/petsc/conf/configure.log to
>>>> petsc-maint at mcs.anl.gov <mailto:petsc-maint at mcs.anl.gov>
>>>> ********************************************************************
>>>> make[1]: *** [all] Error 1
>>>> make: *** [all] Error 2
>>>> *** Using PETSC_DIR=/usr/local/share/petsc/src
>>>> PETSC_ARCH=arch-linux-c-opt ***
>>>> *** Installing PETSc at prefix location: /usr/local/petsc/r ***
>>>> ====================================
>>>> Install complete.
>>>>
>>>>
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>>>>
>>>> Confidential – Limited Access and Use
>>>>
>>>> <configure.log><log.petscbuild><petscbuild.sh>
>>>
>>>
>
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